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Graph neural network (GNN) models play a pivotal role in numerous tasks involving graph-related data analysis. Despite their efficacy, similar to other deep learning models, GNNs are susceptible to adversarial attacks. Even minor perturbations in graph data can induce substantial alterations in model predictions. While existing research has explored various adversarial defense techniques for GNNs, the challenge of defending against adversarial attacks on real-world scale graph data remains largely unresolved. On one hand, methods reliant on graph purification and preprocessing tend to excessively emphasize local graph information, leading to sub-optimal defensive outcomes. On the other hand, approaches rooted in graph structure learning entail significant time overheads, rendering them impractical for large-scale graphs. In this paper, we propose a new defense method named Talos, which enhances the global, rather than local, homophily of graphs as a defense. Experiments show that the proposed approach notably outperforms state-of-the-art defense approaches, while imposing little computational overhead.

We introduce a novel meta-analysis framework to combine dependent tests under a general setting, and utilize it to synthesize various microbiome association tests that are calculated from the same dataset. Our development builds upon the classical meta-analysis methods of aggregating $p$-values and also a more recent general method of combining confidence distributions, but makes generalizations to handle dependent tests. The proposed framework ensures rigorous statistical guarantees, and we provide a comprehensive study and compare it with various existing dependent combination methods. Notably, we demonstrate that the widely used Cauchy combination method for dependent tests, referred to as the vanilla Cauchy combination in this article, can be viewed as a special case within our framework. Moreover, the proposed framework provides a way to address the problem when the distributional assumptions underlying the vanilla Cauchy combination are violated. Our numerical results demonstrate that ignoring the dependence among the to-be-combined components may lead to a severe size distortion phenomenon. Compared to the existing $p$-value combination methods, including the vanilla Cauchy combination method, the proposed combination framework can handle the dependence accurately and utilizes the information efficiently to construct tests with accurate size and enhanced power. The development is applied to Microbiome Association Studies, where we aggregate information from multiple existing tests using the same dataset. The combined tests harness the strengths of each individual test across a wide range of alternative spaces, %resulting in a significant enhancement of testing power across a wide range of alternative spaces, enabling more efficient and meaningful discoveries of vital microbiome associations.

This paper presents a novel method to make statistical inferences for both the model support and regression coefficients in a high-dimensional logistic regression model. Our method is based on the repro samples framework, in which we conduct statistical inference by generating artificial samples mimicking the actual data-generating process. The proposed method has two major advantages. Firstly, for model support, we introduce the first method for constructing model confidence set in a high-dimensional setting and the proposed method only requires a weak signal strength assumption. Secondly, in terms of regression coefficients, we establish confidence sets for any group of linear combinations of regression coefficients. Our simulation results demonstrate that the proposed method produces valid and small model confidence sets and achieves better coverage for regression coefficients than the state-of-the-art debiasing methods. Additionally, we analyze single-cell RNA-seq data on the immune response. Besides identifying genes previously proved as relevant in the literature, our method also discovers a significant gene that has not been studied before, revealing a potential new direction in understanding cellular immune response mechanisms.

Vibrational resonance (VR) is a nonlinear phenomenon in which the system response to a weak signal can be resonantly enhanced by applying a high-frequency modulation signal with an appropriate amplitude. The majority of VR research has focused on amplifying the amplitude or intensity of the system response to a weak signal, whereas the study of the phase information of system responses in VR remains limited. Here, we investigate the VR phenomena in both amplitude and phase quadratures of an optical field in a Kerr nonlinear cavity driven by a near-resonant weak signal and a far-detuned modulation signal. Analytical and numerical results demonstrated that the resonant enhancement in the amplitude and phase quadratures of the system response to a weak signal simultaneously occurs as the amplitude of the modulation signal is varied. There is a linear relation between the amplitude and frequency of the modulation signal for achieving an optimal VR effect. Furthermore, we generalized our study to investigate the quadrature at an arbitrary phase and determined that the VR enhancement sensitively depends on the phase. Our findings not only broaden the scope of VR research by incorporating phase information but also introduces an approach for amplifying an optical field by manipulating another optical field.

Prognostics and health management (PHM) is essential for industrial operation and maintenance, focusing on predicting, diagnosing, and managing the health status of industrial systems. The emergence of the ChatGPT-Like large-scale language model (LLM) has begun to lead a new round of innovation in the AI field. It has extensively promoted the level of intelligence in various fields. Therefore, it is also expected further to change the application paradigm in industrial PHM and promote PHM to become intelligent. Although ChatGPT-Like LLMs have rich knowledge reserves and powerful language understanding and generation capabilities, they lack domain-specific expertise, significantly limiting their practicability in PHM applications. To this end, this study explores the ChatGPT-Like LLM empowered by the local knowledge base (LKB) in industrial PHM to solve the above limitations. In addition, we introduce the method and steps of combining the LKB with LLMs, including LKB preparation, LKB vectorization, prompt engineering, etc. Experimental analysis of real cases shows that combining the LKB with ChatGPT-Like LLM can significantly improve its performance and make ChatGPT-Like LLMs more accurate, relevant, and able to provide more insightful information. This can promote the development of ChatGPT-Like LLMs in industrial PHM and promote their efficiency and quality.

The mixed-size placement benchmarks described in this book chapter directly address several of the shortcomings in previously published suboptimality benchmarks. Two new sets of placement examples are constructed, one targeting the role of nonlocal nets in suboptimality, and another targeting the role of white space and large variations in module sizes. The first set, PEKO-MC, is a set of standard-cell circuits with nonlocal nets in known optimal placements. A given netlist is modified so as to render a given placement for it optimal for the new netlist. Cell dimensions and locations are not changed, net-degree statistics are matched exactly, and over 60% of the original netlist is left unchanged. The second set, PEKO-MS, incorporates a parametrized percentage of white space into a mixed-size placement which precisely matches given macro dimensions and locations as well as the net-degree distributions of the ISPD 2005 benchmark suite [21]. HPWL for the placements generated for the PEKO-MS circuits are proven to be less than 3% above optimal for most cases and within 8% of optimal on all cases., Comment: Version of Record: https://link.springer.com/book/10.1007/978-0-387-68739-1 Pre-print of Chapter 2 from the following work: Gi-Joon Nam and Jason Cong, Modern Circuit Placement Best Practices and Results, 2007, Springer, reproduced with permission of Springer Science+Business Media, LLC. The final authenticated version is available online at: http://dx.doi.org/10.1007/978-0-387-68739-1

In this paper, we present a new and effective simulation-based approach to conduct both finite- and large-sample inference for high-dimensional linear regression models. This approach is developed under the so-called repro samples framework, in which we conduct statistical inference by creating and studying the behavior of artificial samples that are obtained by mimicking the sampling mechanism of the data. We obtain confidence sets for (a) the true model corresponding to the nonzero coefficients, (b) a single or any collection of regression coefficients, and (c) both the model and regression coefficients jointly. We also extend our approaches to drawing inferences on functions of the regression coefficients. The proposed approach fills in two major gaps in the high-dimensional regression literature: (1) lack of effective approaches to address model selection uncertainty and provide valid inference for the underlying true model; (2) lack of effective inference approaches that guarantee finite-sample performances. We provide both finite-sample and asymptotic results to theoretically guarantee the performances of the proposed methods. In addition, our numerical results demonstrate that the proposed methods are valid and achieve better coverage with smaller confidence sets than the existing state-of-art approaches, such as debiasing and bootstrap approaches.

A class of nonparametric two-sample tests has been proposed in this article. As a generalization of the original \v{S}id\'aks' test, the proposed test statistic is developed as the sum of the maximal precedence and maximal exceedance statistics. Unlike the \v{S}id\'ak-type precedence-exceedance test and the maximal precedence test, the proposed test is suitable for a two-sided alternative while being free from any parametric assumption. Exact distribution of the test statistic is obtained under the null as well as under the Lehmann alternative. Power value comparison has been carried out that shows the competency of the proposed test as a useful alternative to a number of existing tests based on precedence-exceedance statistics. Real-life example is provided to illustrate the application of the proposed test.

This article presents a novel, general, and effective simulation-inspired approach, called {\it repro samples method}, to conduct statistical inference. The approach studies the performance of artificial samples, referred to as {\it repro samples}, obtained by mimicking the true observed sample to achieve uncertainty quantification and construct confidence sets for parameters of interest with guaranteed coverage rates. Both exact and asymptotic inferences are developed. An attractive feature of the general framework developed is that it does not rely on the large sample central limit theorem and is likelihood-free. As such, it is thus effective for complicated inference problems which we can not solve using the large sample central limit theorem. The proposed method is applicable to a wide range of problems, including many open questions where solutions were previously unavailable, for example, those involving discrete or non-numerical parameters. To reduce the large computational cost of such inference problems, we develop a unique matching scheme to obtain a data-driven candidate set. Moreover, we show the advantages of the proposed framework over the classical Neyman-Pearson framework. We demonstrate the effectiveness of the proposed approach on various models throughout the paper and provide a case study that addresses an open inference question on how to quantify the uncertainty for the unknown number of components in a normal mixture model. To evaluate the empirical performance of our repro samples method, we conduct simulations and study real data examples with comparisons to existing approaches. Although the development pertains to the settings where the large sample central limit theorem does not apply, it also has direct extensions to the cases where the central limit theorem does hold.

Linear transformation model provides a general framework for analyzing censored survival data with covariates. The proportional hazards and proportional odds models are special cases of the linear transformation model. In biomedical studies, covariates with measurement error may occur in survival data. In this work, we propose a method to obtain estimators of the regression coefficients in the linear transformation model when the covariates are subject to measurement error. In the proposed method, we assume that instrumental variables are available. We develop counting process based estimating equations for finding the estimators of regression coefficients. We prove the large sample properties of the estimators using the martingale representation of the regression estimators. The finite sample performance of the estimators are evaluated through an extensive Monte Carlo simulation study. Finally, we illustrate the proposed method using an AIDS clinical trial (ACTG 175) data., Comment: We proposed an instrumental variable approach to analyze the linear transformation model when covariates are measured with error