76 results on '"Xiping Cheng"'
Search Results
2. The leaf litterfall pattern in an old-growth evergreen broad-leaved forest and its implication for leaf litter mixing studies
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Yuanjie Xu, Qingping Li, Yinxixue Pan, Yizhi Wang, Xiping Cheng, Xiaowen Hu, Jinhua Qi, and Zhiyun Lu
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Leaf litter mixture ,Species composition ,Tree species richness ,Evergreen broad-leaved forests ,Preemption model ,Ecology ,QH540-549.5 - Abstract
In natural systems, litter typically undergoes decomposition as species mixtures, with litter species composition and richness affecting decomposition processes and ecosystem functioning. In this study, we collected and measured leaf litter samples from 25 litter traps within a 1 ha permanent forest dynamics plot and 396 litter traps in three forest sites. Our objective was to investigate the temporal and spatial pattern of leaf litterfall in an old-growth evergreen broad-leaved forest. Mean annual leaf litterfall in the study area was 4.31 ± 0.46 Mg/ha. A total of 61 tree species were recorded in the leaf litter mixtures collected in the 1-ha forest plot, and 39, 48, and 37 tree species were found in the three forest sites. We noted that the abundance of the tree species in the leaf litter mixtures was best fitted as the preemption model. We observed a significant difference in litter species composition between the rain season and the dry season, as well as among the three forest sites, caused by the relative abundance of litterfall from evergreen and deciduous tree species in the two seasons, and the varying proportion of litterfall from dominant tree species in three forest sites. The species diversity of leaf litterfall also varied across different levels. Our study highlights the importance of the dominant tree species in producing leaf litters and determining the litter composition, and indicates that the studies on the leaf litter mixing effects in subtropical forests should be conducted at a high level of species richness, taking into account the relative abundance of litter species.
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- 2024
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3. Evolution and Attribution Analysis of Habitat Quality in China’s First Batch of National Parks
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Pengyue Dai, Yanfang Wang, Jinhong Ye, Jing Chen, Runze Li, and Xiping Cheng
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national parks ,habitat quality ,geographical detector ,ecological contribution rate ,Agriculture - Abstract
In October 2021, China established its first group of national parks, representing a milestone in enhancing the country’s nature reserve system and aligning with global trends in ecological conservation. This study aims to assess habitat quality changes and identify the driving factors in five national parks using multi-temporal land use data from 2000 to 2020. By integrating the land use transfer matrix with the InVEST model, we quantified habitat quality changes, while the geographical detector method was employed to analyze the key natural and socioeconomic drivers. Results showed that grassland and cultivated land were predominantly converted into forestland, leading to improvements in habitat quality in some parks. Specifically, Wuyishan National Park exhibited the highest and most stable habitat quality index, while Three-River-Source National Park experienced significant improvement (+34.10%). However, the Giant Panda, Northeast China Tiger and Leopard, and Hainan Tropical Rainforest National Parks experienced habitat degradation, with decreases of 15.15%, 14.50%, and 13.90%, respectively. Key drivers, such as NDVI, temperature, precipitation, elevation, and population density, were found to significantly influence habitat quality across the parks. This study highlights the ecological benefits of forestland restoration and the risks posed by the conversion of forest to cultivated or construction land, providing valuable insights for optimizing conservation strategies in China’s national parks.
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- 2024
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4. Comparison on distribution and sources of typical major and toxic trace elements in various glacial watersheds of the northeast Tibetan Plateau
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Rui Wu, Zhiwen Dong, Ting Wei, Xiping Cheng, Xiaoyu Jiao, and Yaping Shao
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Toxic trace elements ,Major element ,Suspended particulate matter ,Spatial distribution ,Variability with altitude zone ,Environmental pollution ,TD172-193.5 ,Environmental sciences ,GE1-350 - Abstract
Toxic and major elements, such as As and Fe, in watersheds can significantly impact the surrounding water environment and ecosystem. Thus, in this study, we conducted an investigation into the origins and spatial distribution of typical toxic trace elements (As and Mn) and crustal major elements (Al, Fe, and Ti) in suspended particulate matter (SPM) across various glacial watersheds located at different elevations in the northeastern Tibetan Plateau (NETP) from June to July in 2017. The results revealed that the mean value of each element followed the order of abundance in the samples, with Al having the highest mean value at 21307 µg/L, followed by Fe at 13366 µg/L, Ti at 1520 µg/L, Mn at 245 µg/L, and As at 66.6 µg/L. Moreover, our study identified high content of these elements from the Dabanshan Snowpack, Laohugou Glacier No.12, and Yuzhufeng Glacier in the upper reaches of the basin, which were found to be 9.9, 10.2, and 19.4 times higher, respectively, than that of the upper reaches of the Heihe River. We found that As and Mn exhibited clear indications of anthropogenic influence on a local and regional scale. The calculated enrichment factor (EF) demonstrated a significant As enrichment (EF>100) in the Qiyi and Lenglongling Glaciers, possibly resulting in the release of upstream glacier melt and anthropogenic-derived As deposition. Our findings suggested that the upstream region was primarily linked to glacier meltwater discharge. In contrast, the middle and lower reaches of the basin exhibited a more pronounced influence from local human activities. Based on the findings, the water environment of the glacier watershed appears to be in good condition overall. However, the presence of elevated levels of As element in the water system can be traced back to both anthropogenic and natural factors. As a result, ensuring the safety of the water supply for nearby residents is a matter of utmost concern. This study provides a comprehensive examination of hydrochemical variations and the overall water environment of high-altitude glacier basins in the NETP, offering valuable insights into the topic.
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- 2023
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5. Morphological responses of Bombax ceiba to habitat heterogeneity in Southwest China
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Yanfang Wang, Yueping Zhang, Kaize Mao, Wei Li, and Xiping Cheng
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Bombax ceiba ,morphological structure ,habitat heterogeneity ,tree structure ,leaf traits ,Evolution ,QH359-425 ,Ecology ,QH540-549.5 - Abstract
In order to cope with environmental changes, plants constantly adjust their morphological characteristics in order to adapt to changing environment. In the present study, populations of Bombax ceiba from Mengla area and Yuanjiang area in Yunnan Province were selected as the research objects. Six tree structure factors, such as tree height and crown width, eight leaf trait factors, such as leaf area and leaf length, and several habitat factors, such as area topography, meteorology and soil nutrients, were measured. Structural equation model and variation decomposition method were applied to analyze the effects of various habitat factors on tree structure and leaf traits of B. ceiba, and to reveal its morphological responses to habitat heterogeneity. The results showed that there was a significant negative correlation between tree structure and leaf traits in the two study habitats (Mengla area and Yuanjiang area), and the correlation coefficient was −0.47 in Mengla area and −0.22 in Yuanjiang area. Both topographic and soil factors had positive effects on tree structure of the two habitats, and the topographic factors had a greater impact on tree structure than leaf traits. The main difference was that meteorological factors had a positive effect on tree structure of Mengla, but a negative effect on leaf traits, while Yuanjiang showed the opposite patterns. The variation analysis showed that the superposition of three environmental factors in Mengla area had a greater explanation power of tree structure and leaf traits than that in Yuanjiang area, and the topographic factors had the largest explanation power of tree structure in both areas, which reflected that fact that the characteristics of Mengla habitat imposed a greater influence on B. ceiba. The soil factors in Mengla area accounted for 20.1% of the leaf traits, while the meteorological factors in Yuanjiang area accounted for 11.6%. The results showed that leaf traits were sensitive to environmental differences. In general, the responses of B. ceiba to heterogeneous habitats is based on the specific performance of its resource utilization capacity. The research results can provide references for exploring the morphological responses of plants to heterogeneous habitats.
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- 2023
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6. Functional diversity outperforms taxonomic diversity in revealing short-term trampling effects
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Wei Li, Shuqiang He, Xiping Cheng, and Mingqiang Zhang
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Medicine ,Science - Abstract
Abstract Alpine grasslands harbor diverse groups of flora and fauna, provide important ecosystem functions, and yield essential ecosystem goods and services, especially for the development of nature-based tourism. However, they are experiencing increasing anthropogenic perturbations such as tourist trampling. Although negative effects of tourist trampling on alpine vegetation have been frequently reported, previous studies have focused mainly on changes in taxonomic diversity after trampling, and rarely provide a mechanistic elucidation of trampling effects from a trait-based perspective. The present study evaluates the impacts of simulated trampling on taxonomic and functional diversity of a typical alpine grassland community in Shangri-La, China using a standardized protocol. The results showed that although taxonomic diversity was not statistically significantly affected by trampling, some functional attributes responded rapidly to trampling disturbance. Specifically, functional divergence decreased with an increase in trampling intensity, and characteristics of community-weighted mean trait values changed towards shorter species with reduced leaf area and lower leaf dry matter content. Such strong shifts in functional attributes may further affect ecosystem goods and services provided by alpine grasslands. Our inclusion of functional diversity in the analysis thus adds an important caution to previous studies predominantly focusing on taxonomic diversity, and it is urgent to keep alpine grasslands well managed and ecologically coherent so that their valuable functions and services can be safeguarded.
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- 2021
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7. Heavy metal levels and sources in suspended particulate matters of the glacier watersheds in Northeast Tibetan Plateau
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Rui Wu, Zhiwen Dong, Xiping Cheng, Janice Brahney, Xiaoyu Jiao, and Lihua Wu
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trace metals level ,SPM ,glacier watershed ,Northeast Tibetan Plateau ,source appointments ,Environmental sciences ,GE1-350 - Abstract
This study collected summer meltwater runoff samples from several glacier watersheds of the northeast Tibetan Plateau during June-July 2017, and measured the concentrations of 17 trace elements (Li, Be, Sc, V, Cr, Co, Ni, Cu, Zn, Ga, Rb, Mo, Cd, In, Sb, Cs, Ba) in meltwater suspended particulate matter (SPM), in order to reveal the elemental concentration, spatial distribution, and water quality in remote glacier watershed under regional anthropogenic activities. Results showed that, the concentration of heavy metal elements was relatively high in Yuzhufeng Glacier basin, ranging from 0.57 μg/L (In) to 1,551.6 μg/L (Ba), whereas in Qiyi Glacier basin it was the lowest, ranging from 0.02 to 85.05 μg/L; and relatively medium in other glacier watersheds, with total elemental concentration varying from 1,503.9 to 1726.2 μg/L. Moreover, enrichment factors (EFs) of SPM heavy metals showed significantly higher value in the downstream than that of upper glacier region of the watershed. Most heavy metals with low EFs mainly originated from crust dust, while others with higher EFs (e.g., Cd, Sb) probably originated from anthropogenic sources. Spatially, the EFs of heavy metals were higher in Yuzhufeng and Laohugou Glacier basins; while in other regions the EFs were relatively low, which may be caused by regional land-surface and atmospheric environmental differences surrounding the various glacier watersheds. Compared with other remote locations in global range, heavy metals level (e.g., Cu, Ni, and Zn) in this region is relatively higher. Meanwhile, we find that, though the water quality of the glacier basin in northeast Tibetan Plateau was relatively clean and pollution-free, it is still obviously affected by regional anthropogenic activities. Mining activities, transportation and natural weathering and erosion processes in the study areas have important effects on the content of heavy metal pollutants of river-water SPM in the glacier watershed. Moreover, backward air-mass trajectories demonstrated the potential atmospheric pollutants transport from the surrounding cities and suburbs, to deposit in the snowpack and glaciers, and then melted out and released into meltwater runoff. This study provides a new perspective on more complete view of heavy metals distribution in glacier watershed, and new understanding for the cryosphere water environment evaluation in the Tibetan Plateau region.
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- 2022
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8. Single-cell RNA transcriptome landscape of hepatocytes and non-parenchymal cells in healthy and NAFLD mouse liver
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Qi Su, Sun Y. Kim, Funmi Adewale, Ye Zhou, Christina Aldler, Min Ni, Yi Wei, Michael E. Burczynski, Gurinder S. Atwal, Mark W. Sleeman, Andrew J. Murphy, Yurong Xin, and Xiping Cheng
- Subjects
Animal physiology ,Cell biology ,Transcriptomics ,Science - Abstract
Summary: Nonalcoholic fatty liver disease (NAFLD) is a global health-care problem with limited therapeutic options. To obtain a cellular resolution of pathogenesis, 82,168 single-cell transcriptomes (scRNA-seq) across different NAFLD stages were profiled, identifying hepatocytes and 12 other non-parenchymal cell (NPC) types. scRNA-seq revealed insights into the cellular and molecular mechanisms of the disease. We discovered a dual role for hepatic stellate cells in gene expression regulation and in the potential to trans-differentiate into myofibroblasts. We uncovered distinct expression profiles of Kupffer cells versus monocyte-derived macrophages during NAFLD progression. Kupffer cells showed stronger immune responses, while monocyte-derived macrophages demonstrated a capability for differentiation. Three chimeric NPCs were identified including endothelial-chimeric stellate cells, hepatocyte-chimeric endothelial cells, and endothelial-chimeric Kupffer cells. Our work identified unanticipated aspects of mouse with NAFLD at the single-cell level and advanced the understanding of cellular heterogeneity in NAFLD livers.
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- 2021
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9. Short-term effects of experimental trampling on alpine grasslands in Shangri-la, China
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Wei Li, Shuqiang He, Xiping Cheng, and Gengxin Zhang
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Alpine grasslands ,Trampling disturbance ,Functional traits ,Taxonomic diversity ,Functional diversity ,Ecology ,QH540-549.5 - Abstract
Alpine grasslands provide essential ecosystem functions and services, yet they are increasingly subject to anthropogenic perturbations. Northwest Yunnan (NWY) is one of the most popular tourist destinations in China, and alpine grasslands of NWY are particularly susceptible to human recreational activities such as hiker trampling. However, studies that explicitly evaluate the effects of trampling disturbance on alpine communities of NWY are very limited, let alone research testing the responses of these communities to trampling from a functional trait perspective. The present research is performed in alpine grasslands within and outside of a core nature conservation area of Shangri-La, NWY of China, to study species- and community-level responses of alpine communities to simulated trampling through a functional trait-based approach. The results showed that although species-specific differences existed, alpine plants generally showed rapid morphological changes in response to trampling disturbance. At the community level, trampling disturbance caused strong shifts in taxonomy-based diversity metrics (e.g., species richness, Simpson’s index and Shannon’s index) and functional trait-based diversity metrics (e.g., functional richness, functional evenness, functional divergence, and community-weighted mean trait values). Specifically, increased trampling intensity led to a decrease in taxonomic diversity. Meanwhile, functional richness decreased, while functional evenness and functional divergence increased with an increase in trampling intensity. Also, characteristics of alpine community traits had changed towards those with shorter height, reduced leaf size and lower LDMC, and such strong shifts in taxonomic and functional diversity might further affect the functioning and value of alpine grasslands. Therefore, the protection of high-altitude natural grasslands with high sensitivity and vulnerability is urgent, especially as they are increasingly experiencing multiple environmental and climatic stressors nowadays.
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- 2020
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10. Study of marsh wetland landscape pattern evolution on the Zoigê Plateau due to natural/human dual-effects
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Liqin Dong, Wen Yang, Kun Zhang, Shuo Zhen, Xiping Cheng, and Lihua Wu
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Zoigê Plateau ,Marsh wetland ,Swamp meadow ,Landscape pattern ,Evolution ,Climate change ,Medicine ,Biology (General) ,QH301-705.5 - Abstract
Zoigê Plateau, China’s largest plateau marsh wetland, has experienced large-scale degradation of the marsh wetland and evolution of the wetland landscape pattern over the past 40 years due to climate warming and human activities. How exactly do the wetland landscape pattern characteristics change? How do climatic change and human activities affect the wetland evolution? These questions are yet to be systematically investigated. In order to investigate changes to the marsh wetland on the Zoigê Plateau, field investigations, spatial and statistical analysis were undertaken. Findings from our study indicate that from 1977–2016, the area of marsh wetland on the Plateau reduced by 56.54%, approximately 66,700 hm2 of marsh wetland has been lost. The centroids of both marsh and marshy meadow migrated and the landscape centroid migration behaviors were also correlated with the distribution and variation of the marsh wetland on different slopes. In addition, the number of marsh landscape patches initially increased before decreasing; the number of marshy meadow landscape patches also recorded an initial increase, followed by a decline before a final increase. As the effects of human activities weakened, the aggregation degrees of both marsh and marshy meadow increased. Overall, the fragmentation degree, diversity and fractal dimension of the marsh wetland all declined. An investigation into the driving factors affecting the Plateau area shows that the increase of annual average temperature was the natural factor while trenching and overgrazing were the main human factors resulting in wetland degradation. Results from this study provide basic data and theoretical foundation for the protection and restoration of marsh wetland in alpine regions.
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- 2020
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11. Changes in proteolytic bacteria in paddy soils in response to organic management
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Shu Wang and Xiping Cheng
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organic management ,rice ,proteolytic bacterial communities ,dgge ,qpcr ,Plant culture ,SB1-1110 - Abstract
Proteolytic bacterial communities, which mineralize organic nitrogen, play a key role in agricultural systems. In this study, alkaline metalloprotease (apr) gene fragments from proteolytic bacteria were investigated in bulk and rhizosphere paddy soil from four fields under organic management (for 2, 3, 5, and 9 years), and from one field under conventional management (for 2 years). We analyzed the abundance and structure of the proteolytic bacterial communities using real-time quantitative PCR and denaturing gradient gel electrophoresis. Our results showed that the abundance of proteolytic bacteria ranged from 1.57 × 108 to 8.02 × 108 copies/g of soil. In addition, the abundance of the proteolytic bacteria in the paddy soils under organic management was significantly higher than those in the paddy soil under conventional management. Moreover, the gene copy numbers in the rhizosphere soils were significantly higher than those in the bulk soils. The abundance of proteolytic bacteria tended to increase with the duration of organic management, with the highest abundance being found in the soil that had been under organic management for 5 years. However, the proteolytic bacteria communities in the paddy soils were not significantly affected by management practices. Phylogeny analysis showed that all gel bands obtained represented genes from Pseudomonas. Additionally, correlation analysis and canonical correspondence analysis showed that C/N, C, and N were important factors that influenced the abundance and community structure of the proteolytic bacteria. These results suggest that proteolytic bacteria are indicators in organic management systems, depolymerize organic N and hence maintain soil sustainability. Abbreviations: CM: conventional management; OM: organic management; DGGE: denaturing gradient gel electrophoresis; qPCR: real-time quantitative PCR detecting system; COFCC: China organic food certification center; CCA: canonical correspondence analysis
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- 2017
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12. MCOLN1 is a ROS sensor in lysosomes that regulates autophagy
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Xiaoli Zhang, Xiping Cheng, Lu Yu, Junsheng Yang, Raul Calvo, Samarjit Patnaik, Xin Hu, Qiong Gao, Meimei Yang, Maria Lawas, Markus Delling, Juan Marugan, Marc Ferrer, and Haoxing Xu
- Subjects
Science - Abstract
Reactive oxygen species (ROS) damage cell components, necessitating their clearance through autophagy. Here, the authors show that ROS can induce autophagy by triggering TRPML1 to release Ca2+from the lysosomal lumen, in turn activating the autophagy and lysosomal biogenesis regulator TFEB.
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- 2016
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13. Analysis of the Contribution Rate of Climate Change and Anthropogenic Activity to Runoff Variation in Nenjiang Basin, China
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Liqin Dong, Guangxin Zhang, Xiping Cheng, and Yanfang Wang
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Nenjiang basin ,climate change ,runoff ,contribution rate ,Science - Abstract
The Pettitt abrupt change test method based on ArcGIS was used to undertake change-point analysis on climatic (precipitation and potential evapotranspiration; 39 meteorological stations) and runoff data (27 hydrological stations) from 1954–2015 in the Nenjiang basin. The hydrological sensitivity analysis method was also used to calculate the influential component of climate change upstream, mid-stream, and downstream of the Nenjiang basin, as well as the effect of anthropogenic activities on runoff. Our results show that the upstream area has the highest contribution rate of climate change, followed by the mid-stream area; the downstream area has the lowest contribution rate. Studying climate change contribution rates in various sites in the Nenjiang basin, in addition to anthropogenic activities affecting runoff, can provide the foundation for the protection and utilization of basin water resources, as well as the conservation and restoration of wetlands.
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- 2017
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14. Conflagration-YOLO: a lightweight object detection architecture for conflagration.
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Ning Sun, Pengfei Shen, Xiaoling Ye, Yifei Chen, Xiping Cheng, Pingping Wang, and Jie Min
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- 2023
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15. MT-CO1 expression in nine organs and tissues of different-aged MRL/lpr mice: Investigation of mitochondrial respiratory chain dysfunction at organ level in systemic lupus erythematosus pathogenesis
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Xinglan Huang, Peng Yan, Xinghua Song, Suiying Zhang, Yuqiong Deng, Caifeng Huang, Xiaoqing Zhao, Sheng Liu, Xiping Cheng, and Dongjiang Liao
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Rheumatology - Abstract
Objectives: This study aims to investigate the expression patterns of mitochondrially encoded cytochrome c oxidase 1 (MT-CO1) in different organs and tissues of MRL/lpr mice aged six and 18 weeks. Materials and methods: Six-week-old female MRL/lpr mice (n=10) were considered young lupus model mice, and 18-week-old MRL/lpr mice (n=10) were considered old lupus model mice. Additionally, six-week-old (n=10) and 39-week-old (n=10) female Balb/c mice were used as the young and old controls, respectively. The messenger ribonucleic acid (mRNA) and protein expression levels of MT-CO1 in nine organs/tissues were detected via quantitative polymerase chain reaction (qPCR) and Western blot. Malondialdehyde (MDA) levels were determined with thiobarbituric acid colorimetry. The correlation coefficient of MT-CO1 mRNA levels and MDA levels in each organ/tissue at different ages was analyzed by Pearson correlation analysis. Results: The results showed that most non-immune organs/tissues (heart, lung, liver, kidneys, and intestines) showed increased MT-CO1 expression levels in younger MRL/lpr mice (pMRL/lpr mice. Lower mRNA expression and higher MDA levels were observed in the brains of MRL/lpr mice. However, all MRL/lpr mice showed higher MDA levels than Balb/c mice in every organ no matter younger or older MRL/lpr mice. Conclusion: Our study results suggest that lymphoid mitochondrial hyperfunction at organ level may be an important intrinsic pathogenesis in systemic lupus erythematosus activity, which may affect mitochondrial dysfunction in non-immune organs.
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- 2022
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16. Five‐in‐One: Simultaneous isolation of multiple major liver cell types from livers of normal and NASH mice
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Andrew J. Murphy, Mark W. Sleeman, Xiping Cheng, Funmilola Adewale, Sun Y. Kim, Ye Zhou, David J. Glass, and Qi Su
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Male ,non‐alcoholic steatohepatitis ,Cell type ,Short Communication ,Short Communications ,Fluorescent Antibody Technique ,Cell Separation ,Biology ,liver ,Chronic liver disease ,Immunophenotyping ,cell isolation ,fluorescence‐activated cell sorting ,Mice ,Immune system ,Non-alcoholic Fatty Liver Disease ,medicine ,Animals ,Cluster of differentiation ,Macrophages ,Liver cell ,Endothelial Cells ,RNA ,Cell Biology ,Cell sorting ,medicine.disease ,Cell biology ,Disease Models, Animal ,Hepatocytes ,Hepatic stellate cell ,Molecular Medicine ,Biomarkers - Abstract
NASH is a chronic liver disease that affects 3%–6% of individuals and requires urgent therapeutic developments. Isolating the key cell types in the liver is a necessary step towards understanding their function and roles in disease pathogenesis. However, traditional isolation methods through gradient centrifugation can only collect one or a few cell types simultaneously and pose technical difficulties when applied to NASH livers. Taking advantage of identified cell surface markers from liver single‐cell RNAseq, here we established the combination of gradient centrifugation and antibody‐based cell sorting techniques to isolate five key liver cell types (hepatocytes, endothelial cells, stellate cells, macrophages and other immune cells) from a single mouse liver. This method yielded high purity of each cell type from healthy and NASH livers. Our five‐in‐one protocol simultaneously isolates key liver cell types with high purity under normal and NASH conditions, enabling for systematic and accurate exploratory experiments such as RNA sequencing.
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- 2021
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17. The expression characteristics of cytochrome C oxidase subunit I in mitochondrial of MRL/lpr lupus mice
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Suiying, Zhang, Yuqiong, Deng, Xinglan, Huang, Nan, Li, Hui, Fan, Bo, Xiang, Yuansheng, Wu, Xiping, Cheng, and Xinsheng, Chen
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Electron Transport Complex IV ,Mice ,Mice, Inbred MRL lpr ,Rheumatology ,Blotting, Western ,Immunology ,Animals ,Lupus Erythematosus, Systemic ,Immunology and Allergy ,RNA, Messenger - Abstract
We sought to analyse the expression characteristics of cytochrome C oxidase subunit I in mitochondrial of MRL/lpr lupus mice.The whole blood of MRL/lpr lupus mice was detected for whole mitochondrial genome sequencing performed by Illumina HiSeq PE150 instrument, compared with house mouse (NC_005089.1) and screened for the maximum difference gene, MT-CO1. Quantitative real-time polymerase chain reaction (qRT-PCR) and western blot were used to detect the mRNA and protein expression of MT-CO1 in lupus mice and control mice. The total antioxidant capacities of lupus mice and control mice were measured using the rapid 2,2'-azino-bis(3-ethylbenzothiazoline-6-sulfonate) (ABTS) method.The mitochondrial genome sequencing showed that five mitochondrial genes had base differences and MT-CO1 was the maximum difference gene, 31 in total. Among the 31 base difference sites, 2 were missense mutations and 29 were synonymous_variant. qRT-PCR test results showed that the MT-CO1 expression in lupus mouse blood was statistically lower than that in control mice blood (t=4.333; p=0.0003). Western blot test results revealed that the expression of MT-CO1 was lower in the lupus mice compared with the control mice at the protein level. Serum total antioxidant capacity testing showed that: the serum total antioxidant capacity of lupus mice was statistically lower than that of the control mice (t=9.957; p0.0001).High mutation rate and decreased expression of MT-CO1 in MRL/lpr lupus mice accompanied the decrease of antioxidant capacity, which indicated that abnormal MT-CO1 might be involved in the pathogenesis of SLE and the production of anti-dsDNA antibodies.
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- 2021
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18. Effects of Light Intensity and Regeneration Mode on Stem Form and Growth of Cunninghamia lanceolata Saplings
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Liqin Dong, Yanfang Wang, Xiping Cheng, and Wei Li
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010504 meteorology & atmospheric sciences ,Renewable Energy, Sustainability and the Environment ,Geography, Planning and Development ,Mode (statistics) ,Forestry ,Plant community ,010501 environmental sciences ,Management, Monitoring, Policy and Law ,Biology ,biology.organism_classification ,01 natural sciences ,Light intensity ,Agronomy ,Regeneration (ecology) ,Cunninghamia ,0105 earth and related environmental sciences ,Food Science - Abstract
Regeneration plays an essential role in the restructuring of plant communities, with seedlings and sprouts representing two different regeneration strategies. As an important timber species, Cunnin...
- Published
- 2019
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19. Functional diversity outperforms taxonomic diversity in revealing short-term trampling effects
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Mingqiang Zhang, Xiping Cheng, Wei Li, and Shuqiang He
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Grassland ecology ,Multidisciplinary ,geography.geographical_feature_category ,Ecology ,Science ,Fauna ,food and beverages ,Vegetation ,Grassland ,Article ,Environmental sciences ,Geography ,Disturbance (ecology) ,Trait ,Medicine ,Ecosystem ,Trampling ,human activities ,Diversity (business) - Abstract
Alpine grasslands harbor diverse groups of flora and fauna, provide important ecosystem functions, and yield essential ecosystem goods and services, especially for the development of nature-based tourism. However, they are experiencing increasing anthropogenic perturbations such as tourist trampling. Although negative effects of tourist trampling on alpine vegetation have been frequently reported, previous studies have focused mainly on changes in taxonomic diversity after trampling, and rarely provide a mechanistic elucidation of trampling effects from a trait-based perspective. The present study evaluates the impacts of simulated trampling on taxonomic and functional diversity of a typical alpine grassland community in Shangri-La, China using a standardized protocol. The results showed that although taxonomic diversity was not statistically significantly affected by trampling, some functional attributes responded rapidly to trampling disturbance. Specifically, functional divergence decreased with an increase in trampling intensity, and characteristics of community-weighted mean trait values changed towards shorter species with reduced leaf area and lower leaf dry matter content. Such strong shifts in functional attributes may further affect ecosystem goods and services provided by alpine grasslands. Our inclusion of functional diversity in the analysis thus adds an important caution to previous studies predominantly focusing on taxonomic diversity, and it is urgent to keep alpine grasslands well managed and ecologically coherent so that their valuable functions and services can be safeguarded.
- Published
- 2021
20. Single-cell RNA transcriptome landscape of hepatocytes and non-parenchymal cells in healthy and NAFLD mouse liver
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Yurong Xin, Xiping Cheng, Christina Aldler, Qi Su, Andrew J. Murphy, Michael E. Burczynski, Ye Zhou, Gurinder S. Atwal, Funmi Adewale, Min Ni, Mark W. Sleeman, Sun Y. Kim, and Yi Wei
- Subjects
Regulation of gene expression ,Cell biology ,Multidisciplinary ,Science ,Cell ,Biology ,medicine.disease ,digestive system ,Article ,Transcriptome ,Pathogenesis ,Immune system ,medicine.anatomical_structure ,Nonalcoholic fatty liver disease ,Animal physiology ,Cancer research ,Hepatic stellate cell ,medicine ,Transcriptomics ,Myofibroblast - Abstract
Summary Nonalcoholic fatty liver disease (NAFLD) is a global health-care problem with limited therapeutic options. To obtain a cellular resolution of pathogenesis, 82,168 single-cell transcriptomes (scRNA-seq) across different NAFLD stages were profiled, identifying hepatocytes and 12 other non-parenchymal cell (NPC) types. scRNA-seq revealed insights into the cellular and molecular mechanisms of the disease. We discovered a dual role for hepatic stellate cells in gene expression regulation and in the potential to trans-differentiate into myofibroblasts. We uncovered distinct expression profiles of Kupffer cells versus monocyte-derived macrophages during NAFLD progression. Kupffer cells showed stronger immune responses, while monocyte-derived macrophages demonstrated a capability for differentiation. Three chimeric NPCs were identified including endothelial-chimeric stellate cells, hepatocyte-chimeric endothelial cells, and endothelial-chimeric Kupffer cells. Our work identified unanticipated aspects of mouse with NAFLD at the single-cell level and advanced the understanding of cellular heterogeneity in NAFLD livers., Graphical abstract, Highlights • Of all, 82,168 single-cell transcriptomes across different NAFLD stages were profiled • Hepatocytes and 12 non-parenchymal cell types were identified in mouse liver • Three chimeric NPCs were identified in mouse liver, Animal physiology; Cell biology; Transcriptomics
- Published
- 2021
21. Glucagon Receptor Inhibition Reduces Hyperammonemia and Lethality in Male Mice with Urea Cycle Disorder
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Katie Cavino, Jesper Gromada, Qi Su, Haruka Okamoto, Jinrang Kim, Erqian Na, Biin Sung, and Xiping Cheng
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0301 basic medicine ,Male ,medicine.medical_specialty ,Urea cycle disorder ,Ornithine transcarbamylase ,Ammonia homeostasis ,03 medical and health sciences ,Mice ,0302 clinical medicine ,Endocrinology ,Glutaminase ,Ammonia ,Glutamate-Ammonia Ligase ,Glutamine synthetase ,Internal medicine ,medicine ,Receptors, Glucagon ,Animals ,Hyperammonemia ,Amino Acids ,Ornithine Carbamoyltransferase ,Chemistry ,Body Weight ,Antibodies, Monoclonal ,medicine.disease ,Ornithine Carbamoyltransferase Deficiency Disease ,030104 developmental biology ,Gene Expression Regulation ,Urea cycle ,Glucagon receptor ,030217 neurology & neurosurgery - Abstract
The liver plays a critical role in maintaining ammonia homeostasis. Urea cycle defects, liver injury, or failure and glutamine synthetase (GS) deficiency result in hyperammonemia, serious clinical conditions, and lethality. In this study we used a mouse model with a defect in the urea cycle enzyme ornithine transcarbamylase (Otcspf-ash) to test the hypothesis that glucagon receptor inhibition using a monoclonal blocking antibody will reduce the hyperammonemia and associated lethality induced by a high-protein diet, which exacerbates disease. We found reduced expression of glutaminase, which degrades glutamine and increased expression of GS in livers of Otcspf-ash mice treated with the glucagon receptor blocking antibody. The gene expression changes favor ammonia consumption and were accompanied by increased circulating glutamine levels and diminished hyperammonemia. Otcspf-ash mice treated with the glucagon receptor-blocking antibody gained lean and body mass and had increased survival. These data suggest that glucagon receptor inhibition using a monoclonal antibody could reduce the risk for hyperammonemia and other clinical manifestations of patients suffering from defects in the urea cycle, liver injury, or failure and GS deficiency.
- Published
- 2020
22. Glucagon contributes to liver zonation
- Author
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Sun Y. Kim, Haruka Okamoto, Jesper Gromada, George D. Yancopoulos, Andrew J. Murphy, Yurong Xin, and Xiping Cheng
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0301 basic medicine ,Conservation of Natural Resources ,Multidisciplinary ,Physiology ,Wnt signaling pathway ,glucagon receptor ,Biology ,Biological Sciences ,Glucagon ,Cell biology ,03 medical and health sciences ,Metabolic pathway ,Wnt ,030104 developmental biology ,PNAS Plus ,glucagon ,Gene expression ,liver zonation ,Signal transduction ,City Planning ,Receptor ,Gene ,Glucagon receptor - Abstract
Significance The lobules are the functional units of the liver. They consist of 15–25 layers of hepatocytes with specialized metabolic functions and gene expression patterns relative to their position along the lobule, a phenomenon referred to as metabolic zonation. The Wnt/β-catenin pathway regulates hepatocyte function but how the zonation is controlled to meet the metabolic demands of the liver is unclear. Glucagon regulates hepatic function. We now demonstrate that glucagon contributes to liver zonation by interacting and opposing the actions of the Wnt/β-catenin pathway., Liver zonation characterizes the separation of metabolic pathways along the lobules and is required for optimal function. Wnt/β-catenin signaling controls metabolic zonation by activating genes in the perivenous hepatocytes, while suppressing genes in the periportal counterparts. We now demonstrate that glucagon opposes the actions of Wnt/β-catenin signaling on gene expression and metabolic zonation pattern. The effects were more pronounced in the periportal hepatocytes where 28% of all genes were activated by glucagon and inhibited by Wnt/β-catenin. The glucagon and Wnt/β-catenin receptors and their signaling pathways are uniformly distributed in periportal and perivenous hepatocytes and the expression is not regulated by the opposing signal. Collectively, our results show that glucagon controls gene expression and metabolic zonation in the liver through a counterplay with the Wnt/β-catenin signaling pathway.
- Published
- 2018
23. Common and uncommon adverse cutaneous reactions to erlotinib: a study of 20 Chinese patients with cancer
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Huiling Zhu, Weining Huang, Jiande Han, Jiaxi He, Zhe Zhu, Xiping Cheng, and Chunping Xiong
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Adult ,Male ,medicine.medical_specialty ,Erythema ,Acneiform rash ,Antineoplastic Agents ,Toxicology ,Skin Diseases ,Erlotinib Hydrochloride ,030207 dermatology & venereal diseases ,03 medical and health sciences ,0302 clinical medicine ,Asian People ,Dermis ,Neoplasms ,medicine ,Humans ,In patient ,skin and connective tissue diseases ,Anaphylaxis ,Protein Kinase Inhibitors ,Aged ,business.industry ,Cancer ,General Medicine ,Middle Aged ,medicine.disease ,Dermatology ,Peripheral blood ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,Female ,Nail Changes ,Erlotinib ,medicine.symptom ,business ,medicine.drug - Abstract
This study presented common lesions with systemic toxicities and uncommon adverse cutaneous reactions such as anaphylactic dermatitis in patients undergoing treatment with erlotinib for the benefit of practicing dermatologists and oncologists.Adverse cutaneous reactions associated with erlotinib were reported in 20 Chinese patients with cancer.Adverse cutaneous reactions reported included six cases of anaphylactic dermatitis, 12 cases of acneiform rash, nine cases of xerosis, five cases of nail changes and four cases of hair changes. One case of anaphylactic dermatitis manifested as erythema with swelling on the face and neck, and others as erosive and scaly erythema on the fold of skin, or red macules, papules, plaques and pigmentation on the whole body. Clinical details indicated anaphylactic reactions, including a high percentage of eosinophils in the peripheral blood, eosinophilic infiltration in the dermis layer and good response to antihistamines and topical steroids. Systemic toxicities accompanied by cutaneous reactions occurred in five patients including one case of anaphylactic dermatitis and four cases of acneiform rash. Elevated hepatic enzymes were observed among all the patients with grade-3 or grade-4 acneiform rashes. One patient with anaphylactic dermatitis and one with acneiform rash discontinued erlotinib administration due to severe lesions, high fever or severe elevation of hepatic enzymes.Anaphylactic cutaneous reactions caused by erlotinib are rarely described hitherto. Systemic toxicities should be emphasized especially in cases with severe skin disorders. Timely detection and appropriate early intervention in patients who develop severe cutaneous reaction while on erlotinib therapy should be considered clinically.
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- 2017
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24. A voltage-dependent K+ channel in the lysosome is required for refilling lysosomal Ca2+ stores
- Author
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Haoxing Xu, Stephen Ireland, Xiaoli Zhang, Xiping Cheng, Andrea L. Meredith, Lu Yu, Qiong Gao, Mingxue Gu, Ping Li, Wuyang Wang, Xinran Li, Maria Lawas, and Nirakar Sahoo
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0301 basic medicine ,Membrane potential ,BK channel ,Endoplasmic reticulum ,Cell Biology ,Biology ,Potassium channel ,Transport protein ,Cell biology ,03 medical and health sciences ,Cytosol ,030104 developmental biology ,medicine.anatomical_structure ,Membrane ,Lysosome ,biology.protein ,medicine - Abstract
The resting membrane potential (Δψ) of the cell is negative on the cytosolic side and determined primarily by the plasma membrane’s selective permeability to K+. We show that lysosomal Δψ is set by lysosomal membrane permeabilities to Na+ and H+, but not K+, and is positive on the cytosolic side. An increase in juxta-lysosomal Ca2+ rapidly reversed lysosomal Δψ by activating a large voltage-dependent and K+-selective conductance (LysoKVCa). LysoKVCa is encoded molecularly by SLO1 proteins known for forming plasma membrane BK channels. Opening of single LysoKVCa channels is sufficient to cause the rapid, striking changes in lysosomal Δψ. Lysosomal Ca2+ stores may be refilled from endoplasmic reticulum (ER) Ca2+ via ER–lysosome membrane contact sites. We propose that LysoKVCa serves as the perilysosomal Ca2+ effector to prime lysosomes for the refilling process. Consistently, genetic ablation or pharmacological inhibition of LysoKVCa, or abolition of its Ca2+ sensitivity, blocks refilling and maintenance of lysosomal Ca2+ stores, resulting in lysosomal cholesterol accumulation and a lysosome storage phenotype.
- Published
- 2017
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25. Glucagon receptor inhibition normalizes blood glucose in severe insulin-resistant mice
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Sun Y. Kim, Elizabeth A. Krumm, Andrew J. Murphy, Katie Cavino, Haruka Okamoto, Erqian Na, Jesper Gromada, Xiping Cheng, and George D. Yancopoulos
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0301 basic medicine ,medicine.medical_specialty ,Multidisciplinary ,biology ,business.industry ,medicine.drug_class ,Antagonist ,030209 endocrinology & metabolism ,Biological Sciences ,Monoclonal antibody ,medicine.disease ,03 medical and health sciences ,Insulin receptor ,030104 developmental biology ,0302 clinical medicine ,Endocrinology ,Insulin resistance ,Internal medicine ,Diabetes mellitus ,biology.protein ,Medicine ,Antibody ,business ,Antagonism ,Glucagon receptor - Abstract
Inactivating mutations in the insulin receptor results in extreme insulin resistance. The resulting hyperglycemia is very difficult to treat, and patients are at risk for early morbidity and mortality from complications of diabetes. We used the insulin receptor antagonist S961 to induce severe insulin resistance, hyperglycemia, and ketonemia in mice. Using this model, we show that glucagon receptor (GCGR) inhibition with a monoclonal antibody normalized blood glucose and β-hydroxybutyrate levels. Insulin receptor antagonism increased pancreatic β-cell mass threefold. Normalization of blood glucose levels with GCGR-blocking antibody unexpectedly doubled β-cell mass relative to that observed with S961 alone and 5.8-fold over control. GCGR antibody blockage expanded α-cell mass 5.7-fold, and S961 had no additional effects. Collectively, these data show that GCGR antibody inhibition represents a potential therapeutic option for treatment of patients with extreme insulin-resistance syndromes.
- Published
- 2017
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26. Five-in-One: Simultaneous isolation of multiple major liver cell types from livers of normal and NASH mice.
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Ye Zhou, Adewale, Funmilola, Sun Kim, Qi Su, David Glass, Sleeman, Mark W., Murphy, Andrew J., and Xiping Cheng
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LIVER ,RNA sequencing ,ENDOTHELIAL cells ,LIVER cells ,CENTRIFUGATION ,MICE ,MONOCLONAL antibodies - Abstract
NASH is a chronic liver disease that affects 3%-6% of individuals and requires urgent therapeutic developments. Isolating the key cell types in the liver is a necessary step towards understanding their function and roles in disease pathogenesis. However, traditional isolation methods through gradient centrifugation can only collect one or a few cell types simultaneously and pose technical difficulties when applied to NASH livers. Taking advantage of identified cell surface markers from liver single-cell RNAseq, here we established the combination of gradient centrifugation and antibody-based cell sorting techniques to isolate five key liver cell types (hepatocytes, endothelial cells, stellate cells, macrophages and other immune cells) from a single mouse liver. This method yielded high purity of each cell type from healthy and NASH livers. Our five-in-one protocol simultaneously isolates key liver cell types with high purity under normal and NASH conditions, enabling for systematic and accurate exploratory experiments such as RNA sequencing. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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27. Analysis of Climate Comfort for Tourism in Kunming under Background of Healthy Living Destination
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Xiping Cheng, Yanfang Wang, and Xiaolong Li
- Subjects
Geography ,Socioeconomics ,Tourism - Abstract
Climate comfort is an important index for evaluating the liveability of a region, and it is also the basis for building a healthy living destination. Quantitative analysis of tourism climate comfort index was built in this paper through average temperature, relative humidity, wind speed and other climatic factors in Kunming, using Fuzzy Analytic Hierarchy Process to evaluate the tourism comfort of Kunming. The results show that Kunming has a pleasant perennial climate, a long tourism cycle and a great advantage in tourism climate comfort. The conclusions can provide scientific basis for the related work of healthy living destination.
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- 2020
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28. Study on Explosion Safety Distance in LPG Tank Fire
- Author
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Xiping Cheng and Yunbo Zhang
- Subjects
Shock wave ,Explosive material ,Heat flux ,Hazardous waste ,Storage tank ,Environmental science ,Firefighting ,Fuel storage ,Overpressure ,Marine engineering - Abstract
According to the hazardous characteristics of LPG storage tanks and their types and hazards of fire and explosion accidents, the impact evaluation method, the shock wave overpressure criterion and the heat flux criterion are applied to the standard of human injury. Fire shock wave and heat radiation generated by three different accident types were calculated. The quantitative estimation model of safety distance and LPG reserves was studied, which provided a supplementary basis for the personnel evacuation and firefighter command and decision on LPG fire scene.
- Published
- 2019
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29. A molecular mechanism to regulate lysosome motility for lysosome positioning and tubulation
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Nicholas R. Rydzewski, Qiong Gao, Ahmad Hider, Xiaoli Zhang, Wuyang Wang, Xiping Cheng, Xinran Li, Junsheng Yang, and Haoxing Xu
- Subjects
0301 basic medicine ,lysosome reformation ,Transient Receptor Potential Channels ,Phosphatidylinositol Phosphates ,nutrient starvation ,Calcium-binding protein ,Chlorocebus aethiops ,Lysosomal storage disease ,Mice, Knockout ,dynein ,membrane trafficking ,Vesicle ,phosphoinositide ,Cell biology ,medicine.anatomical_structure ,COS Cells ,TRPML1 ,Fluorescence Recovery After Photobleaching ,Signal Transduction ,Molecular Sequence Data ,Dynein ,Motility ,Biology ,Models, Biological ,Article ,Cell Line ,03 medical and health sciences ,Lysosome ,Autophagy ,medicine ,Animals ,Humans ,ALG-2 ,Adaptor Proteins, Signal Transducing ,Base Sequence ,PI(3,5)P2 ,Calcium-Binding Proteins ,Dyneins ,rab7 GTP-Binding Proteins ,cholesterol ,Lipid bilayer fusion ,Cell Biology ,medicine.disease ,Luminescent Proteins ,HEK293 Cells ,030104 developmental biology ,Microscopy, Fluorescence ,rab GTP-Binding Proteins ,Mutation ,Calcium ,Apoptosis Regulatory Proteins ,Lysosomes ,HeLa Cells - Abstract
To mediate the degradation of biomacromolecules, lysosomes must traffic towards cargo-carrying vesicles for subsequent membrane fusion or fission. Mutations of the lysosomal Ca(2+) channel TRPML1 cause lysosomal storage disease (LSD) characterized by disordered lysosomal membrane trafficking in cells. Here we show that TRPML1 activity is required to promote Ca(2+)-dependent centripetal movement of lysosomes towards the perinuclear region (where autophagosomes accumulate) following autophagy induction. ALG-2, an EF-hand-containing protein, serves as a lysosomal Ca(2+) sensor that associates physically with the minus-end-directed dynactin-dynein motor, while PtdIns(3,5)P(2), a lysosome-localized phosphoinositide, acts upstream of TRPML1. Furthermore, the PtdIns(3,5)P(2)-TRPML1-ALG-2-dynein signalling is necessary for lysosome tubulation and reformation. In contrast, the TRPML1 pathway is not required for the perinuclear accumulation of lysosomes observed in many LSDs, which is instead likely to be caused by secondary cholesterol accumulation that constitutively activates Rab7-RILP-dependent retrograde transport. Ca(2+) release from lysosomes thus provides an on-demand mechanism regulating lysosome motility, positioning and tubulation.
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- 2016
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30. NGL-2 Is a New Partner of PAR Complex in Axon Differentiation
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Qianqian Lei, Rong Wang, Xiping Cheng, Minghua Wu, Zeyou Wang, Gang Xu, Zeng-Jie Yang, Guiyuan Li, Changhong Liu, Zhibin Yu, and Peiyao Li
- Subjects
Male ,PDZ domain ,Regulator ,Nerve Tissue Proteins ,Biology ,Hippocampal formation ,GPI-Linked Proteins ,Axon hillock ,Hippocampus ,Microtubule ,Netrin ,medicine ,Animals ,Humans ,Axon ,Cells, Cultured ,Adaptor Proteins, Signal Transducing ,Kinase ,General Neuroscience ,Cell Differentiation ,Articles ,Axons ,Rats ,Cell biology ,HEK293 Cells ,medicine.anatomical_structure ,nervous system ,Female ,Netrins ,Carrier Proteins ,Neuroscience - Abstract
Neuronal polarization is pivotal for neural network formation during brain development. Axon differentiation is a hallmark of initial neuronal polarization. Here, we report that the leucine-rich repeat-containing protein netrin-G ligand-2 (NGL-2) as a polarity regulator that localizes asymmetrically in rat hippocampal neurons and is required for differentiation of the future axon. NGL-2 was associated with PAR complex, and this interaction resulted in local stabilization of axonal microtubules. Further study showed that the C terminal of NGL-2 binds to the PDZ domain of PAR6, and NGL-2 interacts with PAR3 and atypical PKCζ (aPKCζ), with PAR6 acting as a bridge or modifier. Then, NGL-2 regulates the local stabilization of microtubules and promotes axon differentiation by the aPKCζ/microtubule affinity-regulating kinase 2 pathway. These findings reveal the critical role of NGL-2 in regulating axon differentiation in rat hippocampal neurons and reveal a novel partner of the PAR complex.
- Published
- 2015
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31. A Protein-Truncating HSD17B13 Variant and Protection from Chronic Liver Disease
- Author
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Shane McCarthy, Jonathan C. Cohen, Frederick E. Dewey, Claudia Schurmann, Matthew D. Still, Panayiotis Stevis, Xin Chu, Daniel J. Rader, David J. Carey, Alan R. Shuldiner, Noura S. Abul-Husn, Semanti Mukherjee, Jonathan S. Packer, Xiping Cheng, Ann Stepanchick, Brian Zambrowicz, Helen H. Hobbs, John Penn, Uyenlinh L. Mirshahi, Scott M. Damrauer, Ingrid B. Borecki, Yurong Xin, G. Craig Wood, Jesper Gromada, Suganthi Balasubramanian, Tanya M. Teslovich, Andrew J. Murphy, Erin D. Fuller, Christopher D. Still, Tooraj Mirshahi, Jonathan Z. Luo, John D. Overton, George D. Yancopoulos, Yashu Liu, Alexander H. Li, Aeron Small, Omri Gottesman, Julia Kozlitina, Jeffrey G. Reid, Stefan Stender, David Esopi, William C. Olson, Michael Feldman, Colm O'Dushlaine, Alexander E. Lopez, Nehal Gosalia, Sun Y. Kim, and Aris Baras
- Subjects
0301 basic medicine ,Male ,medicine.medical_specialty ,17-Hydroxysteroid Dehydrogenases ,Genotype ,Chronic liver disease ,Gastroenterology ,Article ,03 medical and health sciences ,Liver disease ,0302 clinical medicine ,Non-alcoholic Fatty Liver Disease ,Loss of Function Mutation ,Internal medicine ,Exome Sequencing ,Medicine ,Humans ,Exome ,Genetic Predisposition to Disease ,Aspartate Aminotransferases ,Exome sequencing ,biology ,business.industry ,Sequence Analysis, RNA ,Liver Diseases ,Fatty liver ,Genetic Variation ,Alanine Transaminase ,General Medicine ,medicine.disease ,Human genetics ,Fatty Liver ,030104 developmental biology ,Alanine transaminase ,Liver ,Chronic Disease ,biology.protein ,Disease Progression ,Linear Models ,030211 gastroenterology & hepatology ,Female ,business ,Biomarkers ,TM6SF2 - Abstract
BACKGROUND: Elucidation of the genetic factors underlying chronic liver disease may reveal new therapeutic targets. METHODS: We used exome sequence data and electronic health records from 46,544 participants in the DiscovEHR human genetics study to identify genetic variants associated with serum levels of alanine aminotransferase (ALT) and aspartate aminotransferase (AST). Variants that were replicated in three additional cohorts (12,527 persons) were evaluated for association with clinical diagnoses of chronic liver disease in DiscovEHR study participants and two independent cohorts (total of 37,173 persons) and with histopathological severity of liver disease in 2391 human liver samples. RESULTS: A splice variant (rs72613567:TA) in HSD17B13, encoding the hepatic lipid droplet protein hydroxysteroid 17-beta dehydrogenase 13, was found to be associated with reduced levels of ALT (P=4.20×10(−12)) and AST (P=6.2×10(−10)). Among DiscovEHR study participants, this variant was found to be associated with a reduced risk of alcoholic liver disease (by 42% [95% confidence interval {CI}, 20 to 58] among heterozygotes and by 53% [95% CI, 3 to 77] among homozygotes), nonalcoholic liver disease (by 17% [95% CI, 8 to 25] among heterozygotes and by 30% [95% CI, 13 to 43] among homozygotes), alcoholic cirrhosis (by 42% [95% CI, 14 to 61] among heterozygotes and by 73% [95% CI, 15 to 91] among homozygotes), and nonalcoholic cirrhosis (by 26% [95% CI, 7 to 40] among heterozygotes and by 49% [95% CI, 15 to 69] among homozygotes). Associations were confirmed in two independent cohorts. The rs72613567:TA variant was associated with a reduced risk of nonalcoholic steatohepatitis, but not steatosis, in human liver samples. The rs72613567:TA variant mitigated liver injury associated with the risk-increasing PNPLA3 p.I148M allele and resulted in an unstable and truncated protein with reduced enzymatic activity. CONCLUSIONS: A loss-of-function variant in HSD17B13 is associated with a reduced risk of chronic liver disease and of progression from steatosis to steatohepatitis. (Funded by Regeneron Pharmaceuticals and others.)
- Published
- 2018
32. The intracellular Ca2+ channel MCOLN1 is required for sarcolemma repair to prevent muscular dystrophy
- Author
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Li Xu, Renzhi Han, Yue Zhuo, Wai Lok Tsang, Mohammad Samie, Abigail G. Garrity, Haoxing Xu, Qiong Gao, Marc Ferrer, Xiaoli Zhang, Marlene Azar, Xiping Cheng, Xiang Wang, Xinran Li, James J. Dowling, Libing Dong, and Nirakar Sahoo
- Subjects
mdx mouse ,Sarcolemma ,Cardiac muscle ,Skeletal muscle ,General Medicine ,Biology ,medicine.disease ,General Biochemistry, Genetics and Molecular Biology ,Exocytosis ,Cell biology ,medicine.anatomical_structure ,Biochemistry ,medicine ,Myocyte ,Muscular dystrophy ,ITGA7 - Abstract
The integrity of the plasma membrane is maintained through an active repair process, especially in skeletal and cardiac muscle cells, in which contraction-induced mechanical damage frequently occurs in vivo. Muscular dystrophies (MDs) are a group of muscle diseases characterized by skeletal muscle wasting and weakness. An important cause of these group of diseases is defective repair of sarcolemmal injuries, which normally requires Ca(2+) sensor proteins and Ca(2+)-dependent delivery of intracellular vesicles to the sites of injury. MCOLN1 (also known as TRPML1, ML1) is an endosomal and lysosomal Ca(2+) channel whose human mutations cause mucolipidosis IV (ML4), a neurodegenerative disease with motor disabilities. Here we report that ML1-null mice develop a primary, early-onset MD independent of neural degeneration. Although the dystrophin-glycoprotein complex and the known membrane repair proteins are expressed normally, membrane resealing was defective in ML1-null muscle fibers and also upon acute and pharmacological inhibition of ML1 channel activity or vesicular Ca(2+) release. Injury facilitated the trafficking and exocytosis of vesicles by upmodulating ML1 channel activity. In the dystrophic mdx mouse model, overexpression of ML1 decreased muscle pathology. Collectively, our data have identified an intracellular Ca(2+) channel that regulates membrane repair in skeletal muscle via Ca(2+)-dependent vesicle exocytosis.
- Published
- 2014
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33. Basal area growth rates of five major species in a Pinus-Cunninghamia forest in eastern China affected by asymmetric competition and spatial autocorrelation
- Author
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Kiyoshi Umeki, Daijiro Mizusaki, Tsuyoshi Honjo, and Xiping Cheng
- Subjects
Pinus massoniana ,biology ,Thinning ,media_common.quotation_subject ,Forestry ,04 agricultural and veterinary sciences ,010501 environmental sciences ,biology.organism_classification ,Spatial distribution ,01 natural sciences ,Competition (biology) ,Basal area ,Agronomy ,Botany ,040103 agronomy & agriculture ,0401 agriculture, forestry, and fisheries ,Growth rate ,Loropetalum chinense ,Cunninghamia ,0105 earth and related environmental sciences ,media_common - Abstract
We analyzed basal area (BA) growth using growth data obtained from permanent plots over 4 years for five major tree species in Anhui Province, eastern China. The studied species were dominant conifers (Pinus massoniana and Cunninghamia lanceolata) and co-dominant broad-leaved species (Castanopsis eyrei, Castanopsis sclerophylla, and Loropetalum chinense). A hierarchical Bayesian approach was used to estimate species-specific parameters and to quantify a spatially autocorrelated random effect. We selected a model that included only the following relevant predictor variables: initial size, asymmetric competition, spatially autocorrelated random effect, and random effect associated with plots. For all species analyzed, the model accounted for significant proportions of the variation (R 2 = 70–98 %) in BA growth rates. The initial slope of the relationship between BA growth rate and the initial BA tended to be steeper for P. massoniana than for C. lanceolata. The BA growth rate increased from an initial low value and then leveled off, with a lower maximum BA growth rate for C. lanceolata than for P. massoniana. The BA growth rate of P. massoniana was significantly affected by asymmetric competition with neighbors. The results of our analyses were used to predict to what extent thinning neighboring trees at different intensities would reduce competition impacts on BA growth of P. massoniana and C. lanceolata. Our results also helped to clarify the ecological characteristics of the species analyzed, as well as the spatial distribution of unknown factors influencing tree growth.
- Published
- 2014
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34. The temporal-spatial variations of climatic factors in the northwest
- Author
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Qiang Chen, Lingling Li, and Xiping Cheng
- Subjects
Correlation coefficient ,Climatology ,Environmental science - Published
- 2017
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35. Analysis on the Employment Intention of Undergraduates in Tourism Management --- A Case Study of Southwest Forestry University
- Author
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Yanfang Wang, Xiping Cheng, Fatao Ma, and Qiang Chen
- Subjects
Economic growth ,Political science ,Hospitality management studies ,Forestry - Published
- 2017
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36. A voltage-dependent K
- Author
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Wuyang, Wang, Xiaoli, Zhang, Qiong, Gao, Maria, Lawas, Lu, Yu, Xiping, Cheng, Mingxue, Gu, Nirakar, Sahoo, Xinran, Li, Ping, Li, Stephen, Ireland, Andrea, Meredith, and Haoxing, Xu
- Subjects
Time Factors ,Genotype ,Endoplasmic Reticulum ,Transfection ,Article ,Membrane Potentials ,Cell Line, Tumor ,Chlorocebus aethiops ,Potassium Channel Blockers ,Animals ,Humans ,Large-Conductance Calcium-Activated Potassium Channel alpha Subunits ,Research Articles ,Mice, Knockout ,Protein Transport ,Cholesterol ,HEK293 Cells ,Phenotype ,Potassium Channels, Voltage-Gated ,COS Cells ,Calcium ,Lysosomes ,Ion Channel Gating - Abstract
Ion-dependent channels and transporters have been identified in lysosomes, including the V-ATPase H+ pump and transient receptor potential mucolipin channels (TRPMLs), the principle Ca2+ release channels in the lysosome, but much less is understood about the roles of Na+ and K+ in lysosomal physiology. Wang et al. describe a voltage-sensitive, Ca2+-activated K+ current in the lysosome (LysoKVCa) and show that LysoKVCa regulates lysosomal membrane potential and refilling of lysosomal Ca2+ stores., The resting membrane potential (Δψ) of the cell is negative on the cytosolic side and determined primarily by the plasma membrane’s selective permeability to K+. We show that lysosomal Δψ is set by lysosomal membrane permeabilities to Na+ and H+, but not K+, and is positive on the cytosolic side. An increase in juxta-lysosomal Ca2+ rapidly reversed lysosomal Δψ by activating a large voltage-dependent and K+-selective conductance (LysoKVCa). LysoKVCa is encoded molecularly by SLO1 proteins known for forming plasma membrane BK channels. Opening of single LysoKVCa channels is sufficient to cause the rapid, striking changes in lysosomal Δψ. Lysosomal Ca2+ stores may be refilled from endoplasmic reticulum (ER) Ca2+ via ER–lysosome membrane contact sites. We propose that LysoKVCa serves as the perilysosomal Ca2+ effector to prime lysosomes for the refilling process. Consistently, genetic ablation or pharmacological inhibition of LysoKVCa, or abolition of its Ca2+ sensitivity, blocks refilling and maintenance of lysosomal Ca2+ stores, resulting in lysosomal cholesterol accumulation and a lysosome storage phenotype.
- Published
- 2016
37. Effects of leaf area and biomass on different seasons for individual eucalyptus trees
- Author
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Sihai Wang, Xiping Cheng, and Liqin Dong
- Subjects
Horticulture ,Environmental science ,Biomass ,Eucalyptus - Published
- 2016
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38. TPC Proteins Are Phosphoinositide- Activated Sodium-Selective Ion Channels in Endosomes and Lysosomes
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Janice Harlow, Xiang Wang, Mohammad Samie, Andrew Goschka, David E. Clapham, Michael X. Zhu, Dongbiao Shen, Yandong Zhou, Xiping Cheng, Xiaoli Zhang, Xinran Li, Dejian Ren, Xian-Ping Dong, and Haoxing Xu
- Subjects
Endosome ,TPCN2 ,Biology ,TPCN1 ,Sodium Channels ,Article ,General Biochemistry, Genetics and Molecular Biology ,Cell Line ,Islets of Langerhans ,Mice ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Phosphatidylinositol Phosphates ,Insulin-Secreting Cells ,Animals ,Ion channel ,030304 developmental biology ,Mice, Knockout ,Membrane potential ,0303 health sciences ,Nicotinic acid adenine dinucleotide phosphate ,Biochemistry, Genetics and Molecular Biology(all) ,Sodium channel ,Cell biology ,Glucose ,Two-pore channel ,chemistry ,Calcium ,Calcium Channels ,Lysosomes ,NADP ,030217 neurology & neurosurgery - Abstract
Mammalian two-pore channel proteins (TPC1, TPC2; TPCN1, TPCN2) encode ion channels in intracellular endosomes and lysosomes and were proposed to mediate endolysosomal calcium release triggered by the second messenger, nicotinic acid adenine dinucleotide phosphate (NAADP). By directly recording TPCs in endolysosomes from wild-type and TPC double-knockout mice, here we show that, in contrast to previous conclusions, TPCs are in fact sodium-selective channels activated by PI(3,5)P(2) and are not activated by NAADP. Moreover, the primary endolysosomal ion is Na(+), not K(+), as had been previously assumed. These findings suggest that the organellar membrane potential may undergo large regulatory changes and may explain the specificity of PI(3,5)P(2) in regulating the fusogenic potential of intracellular organelles.
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- 2012
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39. Activating Mutations of the TRPML1 Channel Revealed by Proline-scanning Mutagenesis
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Xian-Ping Dong, Su Chen, Haoxing Xu, Meiling Liu, Eric W. Mills, Xiping Cheng, Dongbiao Shen, Markus Delling, Xiang Wang, and Yanbin Wang
- Subjects
Proline ,TRPML ,Molecular Sequence Data ,TRPM Cation Channels ,Biology ,Kidney ,Biochemistry ,Exocytosis ,Transient receptor potential channel ,Transient Receptor Potential Channels ,Lysosome ,medicine ,Humans ,Amino Acid Sequence ,Molecular Biology ,Cells, Cultured ,Late endosome ,Manganese ,Sequence Homology, Amino Acid ,Cell Biology ,medicine.disease ,Molecular biology ,Transmembrane protein ,Cell biology ,Electrophysiology ,Membrane Transport, Structure, Function, and Biogenesis ,medicine.anatomical_structure ,Amino Acid Substitution ,Mutagenesis ,Mutation ,Calcium ,Mucolipidosis type IV ,Lysosomes - Abstract
The mucolipin TRP (TRPML) proteins are a family of endolysosomal cation channels with genetically established importance in humans and rodent. Mutations of human TRPML1 cause type IV mucolipidosis, a devastating pediatric neurodegenerative disease. Our recent electrophysiological studies revealed that, although a TRPML1-mediated current can only be recorded in late endosome and lysosome (LEL) using the lysosome patch clamp technique, a proline substitution in TRPML1 (TRPML1(V432P)) results in a large whole cell current. Thus, it remains unknown whether the large TRPML1(V432P)-mediated current results from an increased surface expression (trafficking), elevated channel activity (gating), or both. Here we performed systemic Pro substitutions in a region previously implicated in the gating of various 6 transmembrane cation channels. We found that several Pro substitutions displayed gain-of-function (GOF) constitutive activities at both the plasma membrane (PM) and endolysosomal membranes. Although wild-type TRPML1 and non-GOF Pro substitutions localized exclusively in LEL and were barely detectable in the PM, the GOF mutations with high constitutive activities were not restricted to LEL compartments, and most significantly, exhibited significant surface expression. Because lysosomal exocytosis is Ca(2+)-dependent, constitutive Ca(2+) permeability due to Pro substitutions may have resulted in stimulus-independent intralysosomal Ca(2+) release, hence the surface expression and whole cell current of TRPML1. Indeed, surface staining of lysosome-associated membrane protein-1 (Lamp-1) was dramatically increased in cells expressing GOF TRPML1 channels. We conclude that TRPML1 is an inwardly rectifying, proton-impermeable, Ca(2+) and Fe(2+)/Mn(2+) dually permeable cation channel that may be gated by unidentified cellular mechanisms through a conformational change in the cytoplasmic face of the transmembrane 5 (TM5). Furthermore, activation of TRPML1 in LEL may lead to the appearance of TRPML1 proteins at the PM.
- Published
- 2009
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- View/download PDF
40. Overseas Tourist Market Analysis and Overseas Promotion of Shanxi Province
- Author
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Lingling Li, Xiping Cheng, and Jian Mao
- Subjects
Economic growth ,Geography ,Promotion (rank) ,Market analysis ,media_common.quotation_subject ,Tourism ,media_common - Published
- 2016
- Full Text
- View/download PDF
41. MCOLN1 is a ROS sensor in lysosomes that regulates autophagy
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Raul Calvo, Maria Lawas, Juan J. Marugan, Junsheng Yang, Samarjit Patnaik, Xiaoli Zhang, Lu Yu, Markus Delling, Meimei Yang, Xiping Cheng, Xin Hu, Qiong Gao, Haoxing Xu, and Marc Ferrer
- Subjects
0301 basic medicine ,Mitochondrial ROS ,Patch-Clamp Techniques ,Science ,General Physics and Astronomy ,Mitochondrion ,General Biochemistry, Genetics and Molecular Biology ,Article ,03 medical and health sciences ,Mice ,Transient Receptor Potential Channels ,Lysosome ,Chlorocebus aethiops ,medicine ,Autophagy ,Animals ,Humans ,PI3K/AKT/mTOR pathway ,Multidisciplinary ,Organelle Biogenesis ,Chemistry ,Basic Helix-Loop-Helix Leucine Zipper Transcription Factors ,General Chemistry ,Cell biology ,Mitochondria ,030104 developmental biology ,medicine.anatomical_structure ,HEK293 Cells ,COS Cells ,TFEB ,Calcium ,Organelle biogenesis ,Lysosomes ,Reactive Oxygen Species ,Microtubule-Associated Proteins ,Biogenesis ,HeLa Cells - Abstract
Cellular stresses trigger autophagy to remove damaged macromolecules and organelles. Lysosomes ‘host' multiple stress-sensing mechanisms that trigger the coordinated biogenesis of autophagosomes and lysosomes. For example, transcription factor (TF)EB, which regulates autophagy and lysosome biogenesis, is activated following the inhibition of mTOR, a lysosome-localized nutrient sensor. Here we show that reactive oxygen species (ROS) activate TFEB via a lysosomal Ca2+-dependent mechanism independent of mTOR. Exogenous oxidants or increasing mitochondrial ROS levels directly and specifically activate lysosomal TRPML1 channels, inducing lysosomal Ca2+ release. This activation triggers calcineurin-dependent TFEB-nuclear translocation, autophagy induction and lysosome biogenesis. When TRPML1 is genetically inactivated or pharmacologically inhibited, clearance of damaged mitochondria and removal of excess ROS are blocked. Furthermore, TRPML1's ROS sensitivity is specifically required for lysosome adaptation to mitochondrial damage. Hence, TRPML1 is a ROS sensor localized on the lysosomal membrane that orchestrates an autophagy-dependent negative-feedback programme to mitigate oxidative stress in the cell., Reactive oxygen species (ROS) damage cell components, necessitating their clearance through autophagy. Here, the authors show that ROS can induce autophagy by triggering TRPML1 to release Ca2+ from the lysosomal lumen, in turn activating the autophagy and lysosomal biogenesis regulator TFEB.
- Published
- 2015
42. Single leaf-level measurement and estimation of eucalyptus based on functional-structural model
- Author
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Xiping Cheng, Yanfang Wang, and Yuewei Ma
- Subjects
Estimation ,Environmental science ,Biological system ,Eucalyptus ,Level measurement - Published
- 2015
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- View/download PDF
43. Calcium signaling in membrane repair
- Author
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Xiping Cheng, Haoxing Xu, Xiaoli Zhang, and Lu Yu
- Subjects
Endocytic cycle ,chemistry.chemical_element ,Calcium ,Biology ,Synaptotagmin 1 ,Exocytosis ,Article ,Cell membrane ,Transient receptor potential channel ,Transient Receptor Potential Channels ,medicine ,Animals ,Humans ,Calcium Signaling ,Calcium signaling ,Wound Healing ,Cell Membrane ,Cell Biology ,Cell biology ,medicine.anatomical_structure ,Biochemistry ,chemistry ,Lysosomes ,Intracellular ,Developmental Biology - Abstract
Resealing allows cells to mend damaged membranes rapidly when plasma membrane (PM) disruptions occur. Models of PM repair mechanisms include the "lipid-patch", "endocytic removal", and "macro-vesicle shedding" models, all of which postulate a dependence on local increases in intracellular Ca(2+) at injury sites. Multiple calcium sensors, including synaptotagmin (Syt) VII, dysferlin, and apoptosis-linked gene-2 (ALG-2), are involved in PM resealing, suggesting that Ca(2+) may regulate multiple steps of the repair process. Although earlier studies focused exclusively on external Ca(2+), recent studies suggest that Ca(2+) release from intracellular stores may also be important for PM resealing. Hence, depending on injury size and the type of injury, multiple sources of Ca(2+) may be recruited to trigger and orchestrate repair processes. In this review, we discuss the mechanisms by which the resealing process is promoted by vesicular Ca(2+) channels and Ca(2+) sensors that accumulate at damage sites.
- Published
- 2015
44. Regulation of expression of neuropeptide Y Y1 and Y2 receptors in the arcuate nucleus of fasted rats
- Author
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Christian Broberger, Gong Ju, Xiping Cheng, Xue Yongtao, Xu Zhang, Yong-Guang Tong, and Tomas Hökfelt
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Blood Glucose ,Male ,medicine.medical_specialty ,Food intake ,Blotting, Western ,Y2 receptor ,Central nervous system ,In situ hybridization ,Biology ,Rats, Sprague-Dawley ,Arcuate nucleus ,Internal medicine ,medicine ,Animals ,RNA, Messenger ,Molecular Biology ,In Situ Hybridization ,General Neuroscience ,Arcuate Nucleus of Hypothalamus ,Fasting ,Neuropeptide Y receptor ,Immunohistochemistry ,Rats ,Receptors, Neuropeptide Y ,medicine.anatomical_structure ,Endocrinology ,Gene Expression Regulation ,Hypothalamus ,Neurology (clinical) ,Developmental Biology - Abstract
Neuropeptide Y is expressed in neurons of the hypothalamic arcuate nucleus and has been ascribed a role as a stimulant of food intake. Neuropeptide Y Y1 and Y2 receptors are also localised in the arcuate nucleus, and it has been suggested that the Y1 receptor mediates part of the effect of neuropeptide Y on feeding behaviour. In the present study, immunohistochemistry and in situ hybridization were used to investigate the effect of food deprivation on the expression of Y1 and Y2 receptors in the arcuate nucleus of the rat. Fasting for 48 h induced a decrease in the number and area of Y1 receptor immunoreactive neurons in the arcuate nucleus. Furthermore, arcuate Y1 receptor mRNA levels also decreased after food deprivation. The decrease in the number of the Y1 receptor immunoreactive neurons was partially attenuated by supplementing the drinking water with 10% glucose. In contrast, fasting did not significantly change Y2 receptor mRNA levels in the arcuate nucleus. These results support the view that Y1 receptors in the arcuate nucleus play a role in the feeding pattern induced by neuropeptide Y.
- Published
- 1998
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45. The intracellular Ca²⁺ channel MCOLN1 is required for sarcolemma repair to prevent muscular dystrophy
- Author
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Xiping, Cheng, Xiaoli, Zhang, Qiong, Gao, Mohammad, Ali Samie, Marlene, Azar, Wai Lok, Tsang, Libing, Dong, Nirakar, Sahoo, Xinran, Li, Yue, Zhuo, Abigail G, Garrity, Xiang, Wang, Marc, Ferrer, James, Dowling, Li, Xu, Renzhi, Han, and Haoxing, Xu
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Male ,Mice, Knockout ,Mice, 129 Strain ,Cell Membrane ,Muscle Fibers, Skeletal ,Membrane repair ,Muscular Dystrophy, Animal ,Exocytosis ,Article ,Mice ,Ca2+ ,Sarcolemma ,Transient Receptor Potential Channels ,TRP channel ,Mice, Inbred mdx ,lysosome ,Animals ,Humans ,Female ,Calcium Channels - Abstract
The integrity of the plasma membrane is maintained through an active repair process, especially in skeletal and cardiac muscle cells, in which contraction-induced mechanical damage frequently occurs in vivo. Muscular dystrophies (MDs) are a group of muscle diseases characterized by skeletal muscle wasting and weakness. An important cause of these group of diseases is defective repair of sarcolemmal injuries, which normally requires Ca(2+) sensor proteins and Ca(2+)-dependent delivery of intracellular vesicles to the sites of injury. MCOLN1 (also known as TRPML1, ML1) is an endosomal and lysosomal Ca(2+) channel whose human mutations cause mucolipidosis IV (ML4), a neurodegenerative disease with motor disabilities. Here we report that ML1-null mice develop a primary, early-onset MD independent of neural degeneration. Although the dystrophin-glycoprotein complex and the known membrane repair proteins are expressed normally, membrane resealing was defective in ML1-null muscle fibers and also upon acute and pharmacological inhibition of ML1 channel activity or vesicular Ca(2+) release. Injury facilitated the trafficking and exocytosis of vesicles by upmodulating ML1 channel activity. In the dystrophic mdx mouse model, overexpression of ML1 decreased muscle pathology. Collectively, our data have identified an intracellular Ca(2+) channel that regulates membrane repair in skeletal muscle via Ca(2+)-dependent vesicle exocytosis.
- Published
- 2014
46. A TRP Channel in the Lysosome Regulates Large Particle Phagocytosis via Focal Exocytosis
- Author
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Mohammad Samie, Guy M. Lenk, Lois S. Weisman, Sergey N. Zolov, Xiaoli Zhang, Haoxing Xu, Xiping Cheng, Marthe Bryant-Genevier, Jim Pickel, Xiang Wang, Evan Gregg, Noel Southall, Abigail G. Garrity, Susan A. Slaugenhaupt, Steve Titus, Yue Zhuo, Qiong Gao, Marlene Azar, Andrew Goschka, Marugan Juan, Xinran Li, and Marc Ferrer
- Subjects
Aging ,Endosome ,Phagocytosis ,Biology ,General Biochemistry, Genetics and Molecular Biology ,Exocytosis ,Article ,Mice ,Transient Receptor Potential Channels ,Phosphatidylinositol Phosphates ,Lysosome ,Extracellular ,medicine ,Animals ,Particle Size ,Molecular Biology ,Phagosome ,Mannose 6-phosphate receptor ,Cell Biology ,medicine.disease ,Cell biology ,medicine.anatomical_structure ,Gene Expression Regulation ,Calcium ,Mucolipidosis type IV ,Lysosomes ,Developmental Biology - Abstract
SummaryPhagocytosis of large extracellular particles such as apoptotic bodies requires delivery of the intracellular endosomal and lysosomal membranes to form plasmalemmal pseudopods. Here, we identified mucolipin TRP channel 1 (TRPML1) as the key lysosomal Ca2+ channel regulating focal exocytosis and phagosome biogenesis. Both particle ingestion and lysosomal exocytosis are inhibited by synthetic TRPML1 blockers and are defective in macrophages isolated from TRPML1 knockout mice. Furthermore, TRPML1 overexpression and TRPML1 agonists facilitate both lysosomal exocytosis and particle uptake. Using time-lapse confocal imaging and direct patch clamping of phagosomal membranes, we found that particle binding induces lysosomal PI(3,5)P2 elevation to trigger TRPML1-mediated lysosomal Ca2+ release specifically at the site of uptake, rapidly delivering TRPML1-resident lysosomal membranes to nascent phagosomes via lysosomal exocytosis. Thus phagocytic ingestion of large particles activates a phosphoinositide- and Ca2+-dependent exocytosis pathway to provide membranes necessary for pseudopod extension, leading to clearance of senescent and apoptotic cells in vivo.
- Published
- 2013
47. Glucagon contributes to liver zonation.
- Author
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Xiping Cheng, Kim, Sun Y., Haruka Okamotoa, Yurong Xin, Yancopoulos, George D., Murphy, Andrew J., and Gromada, Jesper
- Subjects
- *
GLUCAGON regulation , *LIVER cells , *WNT signal transduction , *CATENIN genetics , *HEPATOCYTE growth factor , *DISEASES - Abstract
Liver zonation characterizes the separation of metabolic pathways along the lobules and is required for optimal function. Wnt/β-catenin signaling controls metabolic zonation by activating genes in the perivenous hepatocytes, while suppressing genes in the periportal counterparts. We now demonstrate that glucagon opposes the actions of Wnt/β-catenin signaling on gene expression and metabolic zonation pattern. The effects were more pronounced in the periportal hepatocytes where 28% of all genes were activated by glucagon and inhibited by Wnt/β-catenin. The glucagon and Wnt/β-catenin receptors and their signaling pathways are uniformly distributed in periportal and perivenous hepatocytes and the expression is not regulated by the opposing signal. Collectively, our results show that glucagon controls gene expression and metabolic zonation in the liver through a counterplay with the Wnt/β-catenin signaling pathway. [ABSTRACT FROM AUTHOR]
- Published
- 2018
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- View/download PDF
48. CASC2c as an unfavorable prognosis factor interacts with miR-101 to mediate astrocytoma tumorigenesis
- Author
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Qing Liu, Honghui Yang, Lin Wang, Zhibin Yu, Yingnan Sun, Guiyuan Li, Xiping Cheng, Chaofeng Tu, Peiyao Li, Xiaoling She, Minghua Wu, and Changhong Liu
- Subjects
0301 basic medicine ,Cancer Research ,Transcription, Genetic ,Carcinogenesis ,Immunology ,Astrocytoma ,Biology ,medicine.disease_cause ,Bioinformatics ,law.invention ,Rats, Sprague-Dawley ,Loss of heterozygosity ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,law ,Transcription (biology) ,Cell Line, Tumor ,medicine ,Animals ,Humans ,Cell Proliferation ,Regulation of gene expression ,Gene knockdown ,Brain Neoplasms ,Tumor Suppressor Proteins ,RNA ,Cell Biology ,Prognosis ,medicine.disease ,Chromatin ,Rats ,Gene Expression Regulation, Neoplastic ,MicroRNAs ,030104 developmental biology ,Disease Progression ,Cancer research ,Suppressor ,Original Article ,RNA, Long Noncoding - Abstract
miR-101 has been suggested as a tumor suppressor, but the promoter methylation and loss of heterozygosity didn’t contribute to its low expression in astrocytoma. We investigated the role of a new long non-coding RNA CASC2c binding with miR-101. High CASC2c was positively correlated with astrocytoma progression, and an unfavorable prognosis factor for patients. Knockdown CASC2c inhibited proliferation and tumorgenesis. Overexpression of CASC2c promotes the malignant characteristic of astrocytoma cells.CASC2c directly bound miR-101 and mediated pre-miR-101 processing into mature miR-101, and functions as a competitor of miR-101 target genes such as CPEB1. Patients who possessed both low CASC2c and high miR-101 had a longer survival than those of low CASC2c alone or high miR-101 alone. In summary, CASC2c plays the onco-RNA role in the tumorgenesis of astrocytoma by acting as a decoy miR-101 sponge. Combination of low expression of CASC2c and high expression of miR-101 has an important referential significance to evaluate the prognosis of patients.
- Published
- 2017
- Full Text
- View/download PDF
49. [Heterogeneity of mitochondrial DNA in black and white hair of patients with type 2 diabetes]
- Author
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Fengming, Tan, Xiping, Cheng, Shengqiang, Chen, Zhichao, Chen, Yanping, Wang, and Yansong, Shen
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Adult ,Male ,Aging ,Genetic Heterogeneity ,Young Adult ,Diabetes Mellitus, Type 2 ,Age Factors ,Humans ,Female ,Middle Aged ,DNA, Mitochondrial ,Chromatography, High Pressure Liquid ,Hair - Abstract
To detect the heterogeneity of mitochondrial DNA (mtDNA) in black and white hair of patients with type 2 diabetes.MtDNA was extracted from the hair shaft of the patients to amplify two target DNA fragment from mtDNA coding region and control region using PCR. The differences in the heterogeneity in the target DNA fragment was analyzed between diabetic patients and the control group with denaturing high-performance liquid chromatography (DHPLC).In the control subjects and diabetic patients, the mtDNA heterogeneity in the black hair was 3% and 10% in 20-45 year-old groups and 9% and 17% in 45-70 year-old groups, as compared to 9%, 20%, 21%, and 40% in the white hair, respectively. The mtDNA heterogeneity in the black and white hair was both higher in the diabetic patients than in the control subjects of the same age group, and was also higher in older age subgroups in both control and diabetic groups (P0.05). The white hair mtDNA showed a significantly higher heterogeneity than the black hair mtDNA in the two age groups of diabetic patients and in 45-70 year-old control group (P0.05).The mtDNA heterogeneity in the hair increases in type 2 diabetic patients and show an association with aging.
- Published
- 2012
50. Novel Na+-Selective Channels in the Lysosome
- Author
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Mohammad Samie, Andrew Goschka, David E. Clapham, Janice Harlow, Yandong Zhou, Xiping Cheng, Xiang Wang, Michael X. Zhu, Xiaoli Zhang, Dongbiao Shen, Xian-Ping Dong, Xinran Li, Dejian Ren, and Haoxing Xu
- Subjects
Membrane potential ,chemistry.chemical_classification ,0303 health sciences ,Sodium ,Biophysics ,chemistry.chemical_element ,Biology ,Cell biology ,Divalent ,03 medical and health sciences ,0302 clinical medicine ,Membrane ,Ion homeostasis ,medicine.anatomical_structure ,Enzyme ,chemistry ,Lysosome ,medicine ,030217 neurology & neurosurgery ,Homeostasis ,030304 developmental biology - Abstract
Lysosomes, traditionally believed to be the terminal “recycle center” for biological “garbage”, are now known to play indispensable roles in membrane trafficking and intracellular signaling pathways. The multiple functions require the establishment of lysosomal acidic lumen, and this pH regulation has been shown to be tightly coupled with ionic (H+, Ca2+, Mg2+, Na+, K+, and Cl−) flux/homeostasis of the lysosome. Moreover, recent studies have suggested that the ion fluxes may directly regulate lysosomal dynamics. PI(3,5)P2 is an endolysosome-specific phosphoinositide that regulates ion homeostasis and membrane trafficking of endolysosomes via poorly understood mechanisms; human mutations of PI(3,5)P2-metabolizing enzymes cause muscle and neurodegenerative diseases. Here we measure that sodium is the predominant cation in the lysosome using atomic absorption, indicating a large Na+ concentration gradient is present across the lysosomal membrane. By the lysosome patch-clamp technique, we report that PI(3,5)P2 specifically activates two novel Na+-selective channels in the lysosome. Their identification provides insight into divalent cation selectivity, as well as to the mechanisms used by membranous lipids to directly regulate ion flux resulting in rapid changes in membrane potential and the fusogenic potential of intracellular organelles. We are currently investigating their physiological functions in detail.
- Published
- 2012
- Full Text
- View/download PDF
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