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Resequencing of Myostatin, Growth Hormone, Follistatin-A-like, Insulin-like Growth Factor I (IGF-I) and Myogenin (MYOG) genes was completed to discover novel genetic variations and assess non synonymous (ns) polymorphisms (SNPs) effect on growth related traits of channel catfish. Wild and farmed animals were used as a discovering population. Resequencing lead to the identification of 59 new variants in the five analyzed genes; 66% found in introns and 34% in coding regions. From coding regions, 14 variants were synonyms and six were ns variations. A mutation rate of one in 129 bp was estimated. Four ns variations were selected for validation and association analysis. In IGF-I two ns polymorphisms, at IGF-I19 the G wild type allele was fixed in population and for IGF-I63 the C allele had a frequency of 0.972 and for mutate allele G of 0.027. In MYOG two ns SNPs were assessed. MYOG131 presented a frequency of alleles T and A, of 0.754 and 0.246, respectively and MYOG233, with a frequency of G and C of 0.775 and 0.225, respectively. Only MYOG131 (g.529TA) was significantly associated (P 0.04) to some growth traits. Results suggest MYOG131 g.529TA as candidate locus for genetic enhancement of growth traits in channel catfish.

The white-tailed deer ( Odocoileus virginianus ) is an important, sustainable-use species in Mexico; 14 subspecies are widely distributed throughout the Mexican territory. The criteria for classifying subspecies is based on morphological features throughout their geographical range; however, the complete genetic characterization of Mexican subspecies has not been established. The objective of the present work is to report the mitogenomes of 9 of the 14 white-tailed deer subspecies from Mexico and identify their unique variations. Typical vertebrate mitogenomes structures (i.e., 13 protein-coding genes, 22 tRNA genes, and 2 rRNA genes) were observed in the studied subspecies. The greatest numbers of polymorphisms were identified in the D-loop, ND4, ND5, CYTB/COI, ATP6, and COIII genes. Phylogenetic analyses showed that the southern and southeastern subspecies were distinct from the central and northern subspecies; the greatest genetic distances were also observed between these 2 groups. These subspecies-specific variations could be useful for designing a strategy to genetically characterize the studied subspecies. El venado cola blanca es una de las especies de mayor importancia dentro del aprovechamiento de la fauna silvestre de México, donde se distribuyen de manera natural 14 subespecies. Actualmente, estas subespecies se han clasificado de acuerdo a sus variaciones fenotípicas que presentan a lo largo de su rango de distribución, sin embargo no se ha establecido la caracterización genética completa de las mismas. Es por esto que el objetivo del presente estudio es reportar los mitogenomas de 9 de las 14 subespecies de venado cola blanca, así como identificar las variaciones únicas de cada subespecie. En las 9 subespecies se observó la estructura típica de los mitogenomas de vertebrados (13 genes que codifican para proteínas, 22 ARNt, 2 ARNr). Los genes con mayor polimorfismo fueron D-loop, ND4, ND5, CYTB/COI, ATP6 y COIII. El análisis filogenético mostró la separación de las subespecies del sur y sureste de las subespecies del centro y norte del país, a su vez las distancias genéticas entre estos dos grupos fueron las más altas. Estas variaciones subespecie-específicas podrían ser útiles para diseñar una estrategia para caracterizar genéticamente las subespecies estudiadas.

The signals of selection using candidate genes polymorphism were studied in five zebu breeds of Mexico. Three loci from GHRH and complementarily Steroyl Co Desaturase F762, Dopamine Beta Hydroxilase 17299, and LEP3272 were identified under selection. Findings depict Zebu selection pressure mainly on Brahman breed resulting in a divergent structure pattern.

Channel catfish, Ictalurus punctatus, is one of the most important fish species for aquaculture worldwide. Egg mass production is directly related to the success and profitability of hatchery farms assuring an adequate egg and consequently fry and fingerling quantity. Most of the success of hatchery farms in Mexico rely on the capacity of production for enough fry to cover the demand of grow-out farms. An analysis was performed with the purpose of estimate the effect of year, month, color, pond and water temperature on egg mass weight data (EMW, g) (n = 3201). The overall mean for EMW was 683.21 g. The effect of all assessed factors was highly significant (P < 0.0001). Pond and year effects suggested an effect possibly related to management strategies. Month indicated an important effect on early spawning, and water temperature showed a highly significant effect of gradient pattern on EMW (P < 0.0001), with a linear slope of −67.8 g by increasing temperature degree. Results confirmed the importance of non-genetic influence on egg mass production, supporting the need for attention of this highly variable trait and suggested the possible improvement on this reproductive indicator through the better control of environmental sources of variation.

The channel catfish farming in Mexico began in the 1970s. One of the most important areas of production is its northeastern region. Traditionally, the channel catfish farmers have attempted to preserve their original genetic stock. After more than 30 yr of production, the genetic relationship between stocks has not been assessed. The goal of this study was to evaluate the genetic differentiation between five channel catfish farm populations, using 13 microsatellite markers. A total of 154 fin clip samples were collected from five channel catfish farms in Tamaulipas. We also included 31 individuals of the commercial strain NWAC103. In each population, we calculated parameter of genetic variability: inbreeding coefficient (FIS), pairwise differentiation (FST), and genetic distance (DC). For the inference of populations and individual assignment two Bayesian methods were used. Genetic variability parameters were NA = 9.54–11.08 and AE = 5.40–6.67. Hardy–Weinberg equilibrium deviations were observed for all farm populations examined, and a deficit of heterozygotes was found. Signals of inbreeding were observed, particularly for the ACU (Acuamex) hatchery. Populations EKA (Empresas Karol) and ACU showed higher genetic differentiation values with respect to the commercial strain (FST = 0.107; FST = 0.082, respectively). Moderated genetic differences (FST = 0.067; DC = 0.080) were observed between the EKA and ACU. Clustering analysis revealed a well-defined group between EKA and TPA (El Tiron Parejo). In the Bayesian analysis three groups were defined. The first group was formed by EKA and TPA, the second group included ACU, LAJ (La Lajilla), and PRO (Prodatec). In the third group was the commercial strain. In the assignment of individuals, EKA and ACU were represented by exclusive genotypes. Identification of two genetic stocks, one located in the EKA and the other in the ACU population, will be relevant for future management of these hatcheries. Additionally, the information from microsatellites and the statistical procedures presented will be important tools for genetic monitoring of these farm populations.

The white-tailed deer (Odocoileus virginianus) is one of the most important species related to sport hunting in northern Mexico. During the last decade, this species has been subjected to intensive breeding to achieve improvements in certain desired traits (i.e., antlers). This alleged intensive management of bringing originally wild populations into captivity might have harmful consequences on genetic diversity. In this short research paper we estimate and discuss the consequences of that transition, as assessed by a microsatellite genetic marker analysis. The results show that no short-term changes in genetic diversity parameters were promoted by captivity; however, a genetic diversity condition maintained by artificial genetic flow was identified, perhaps allowing for the required introgression of gene diversity into this closed population. A wider analysis is recommended and the implications are discussed. Within a realistic forecast of expanding sport hunting, the achievement of useful, pragmatic, an...

deer from 13 sites in the range of 5 subspecies occurring in Mexico, O. v. texanus, O. v. carminis, O. v. veraecrucis, O. v. sinaloae, and O. v. yucatanensis. We estimated genetic diversity and structure based on 12 microsatellite DNA loci. Observed heterozygosity (HO) was comparable to that of white-tailed deer in the United States (HO ¼ 0.53–0.64), with the exception of O. v. yucatanensis (HO ¼ 0.41). We observed statistically significant genetic structure among all 13 sites (FST ¼ 0.15). Analysis of molecular variance revealed that grouping sites by subspecies (FSC ¼ 0.09) or geographic region (FSC ¼ 0.13–0.14) explained a moderate portion of genetic variation. However, no higher-level group minimized differentiation among populations within the subspecies or regional groups (FST ¼ 0.16–0.20). Pairwise genetic distances among sites were correlated with geographic distance (r 2 ¼ 0.38), but some geographically proximate sites were genetically differentiated (FST . 0.20), especially in the Yucatan. Deer in the Yucatan were genetically differentiated from other subspecies and had comparatively lower genetic diversity, consistent with the biogeographic history of the region. Populations of white-tailed deer in Mexico are subject to a range of management challenges. Additional research is needed to understand the effect of management on the diversity and genetic structure of white-tailed deer.

The evolution of sexual signaling systems is influenced by natural and sexual selection acting on complex interactions among traits. Natural hybrid zones are excellent systems for assessing fitness effects on sexual phenotypes. Most documented hybrid zones, however, show little variation in sexual signals. A hybrid zone between the swordtails Xiphophorus birchmanni and Xiphophorus malinche is characterized by numerous recombinants for male sexual traits. Analyses of geographic variation in morphological and isozyme traits in the Rio Calnali, Hidalgo, Mexico, reveal an upstream-to-downstream gradient from X. malinche- to X. birchmanni-type traits. A second hybrid zone, likely isolated from the R. Calnali, occurs in the nearby Arroyo Pochutla. Although the presumed female preference for swords predicts the introgression of swords from X. malinche-like populations into hybrid populations, the opposite pattern was observed. Swords are reduced in populations otherwise characterized by X. malinche trai...

DNA from four cattle breeds was used to re-sequence all of the exons and 56% of the introns of the bovine tyrosine hydroxylase (TH) gene and 97% and 13% of the bovine dopamine b-hydroxylase (DBH) coding and non-coding sequences, respectively. Two novel single nucleotide polymorphisms (SNPs) and a microsatellite motif were found in the TH sequences. The DBH sequences contained 62 nucleotide changes, including eight non-synonymous SNPs (nsSNPs) that are of particular interest because they may alter protein function and therefore affect the phenotype. These DBH nsSNPs resulted in amino acid substitutions that were predicted to destabilize the protein structure. Six SNPs (one from TH and five from DBH non-synonymous SNPs) were genotyped in 140 animals; all of them were polymorphic and had a minor allele frequency of > 9%. There were significant differences in the intra- and inter-population haplotype distributions. The haplotype differences between Brahman cattle and the three B. t. taurus breeds (Charolais, Holstein and Lidia) were interesting from a behavioural point of view because of the differences in temperament between these breeds.

"La terneza y el marmoreo son características poligénicas e indicadoras de calidad en la carne bovina. Uno de los genes relacionados con la terneza en la carne es el gen de µ-calpaína (CAPN), en el cual se han identificado dos polimorfismos CAPN316 y CAPN4751 asociados significativamente a esta característica. En el gen de la Tiroglobulina (TG5) relacionado con el marmoleo, se ha identificado un polimorfismo en la posición -537del gen, asociado a la deposición de grasa intramuscular en bovinos. Objetivo: estimar las frecuencias genotípicas y alélicas de tres marcadores genéticos y su asocación con carcaterísticas de calidad de la carne bovina. Métodos: a partir de muestras de sangre de 80 toretes Charolais de 12 meses de edad mantenidos en pruebas de comportamiento, se caracterizaron polimorfismos en los marcadores CAPN316 y CAPN4751 identificados mediante el diseño de oligonucleótidos y la creación de sitios de restricción en la reacción en cadena de la polimerasa (PCR-ACRS) y de TG5 identifificado mediante PCRRFLP, se utilizaron cebadores previamente reportados. Resultados: las frecuencias alélicas y genotípicas de los polimorfismo de CAPN4751 y TG5 mostraron estar en equilibrio genético; más no para CAPN316. Los análisis de asociación mostraron una diferencia significativa del marcador CAPN4751 sobre el área del músculo Longissimus dorsi (REA) (p

Background: Channel catfish are one of the most important aquaculture species raised for food purposes in Mexico. Two temporal samples were obtained from the largest channel catfish breeding hatchery in Mexico to identify changes in genetic diversity and inbreeding that are promoted by traditional hatchery management. Results: The genetic parameter analysis of 11 microsatellite loci showed no significant change in genetic diversity (p > 0.05). However, a significant heterozygosis deficiency was detected (p < 0.001), and genetic structure analysis indicated moderate differentiation between the temporally divided populations (F ST = 0.08). A moderate level of inbreeding and a slight increase of the inbreeding coefficient from 0.23 to 0.27 were the result of traditional hatchery practices. To achieve an effective population size, the temporal approach resulted in a limited number of breeders to maintain genetic variability. Conclusions: Although no significant change in genetic diversity parameters was found, the heterozygote deficiency and low effective number of breeders suggest that there is a risk for increased inbreeding. Thus, we propose the need for controlled reproductive management and the establishment of genetic programs in hatcheries. Molecular tools can provide valuable information to facilitate the achievement of these goals.

Fueron obtenidas muestras de toros Charolais de registro (N=130) candidatos a sementales para hatos pie de cría manejados en un centro de pruebas de comportamiento productivo, con la finalidad de estimar las frecuencias genotípicas y alélicas de tres marcadores simples de un solo nucleótido que han sido asociados con características de calidad de la carne en ganado bovino. Se analizaron dos polimorfismos en el gen Calpaína, CAPN316 y CAPN4751, y la mutación Q204X, privada de la raza Charolais, en el gen Miostatina. Se encontró alta frecuencia del alelo normal en CAPN316 (f=0.85) y frecuencia similares de los alelos normal y mutado para el marcador CAPN4751 (f= 0.58 y 0.48, respectivamente). Se analizó la frecuencia de la mutación Q204X del gen Miostatina, encontrándose baja frecuencia (f= 0.03) atribuible a la selección negativa para la característica de doble musculatura en los últimos 30 años. Se discuten las implicaciones del estudio y validación del efecto de estos marcadores en el sistema de productor de carne bovina. La implementación del uso de estos marcadores podría ayudar a incentivar el desarrollo del sistema, el fomento de nichos de mercado para la calidad de la carne y sobre aumentar la rentabilidad de los sistemas de producción de carne actuales. Samples from registered Charolais sire candidate bulls for breeding herds and managed in a performance test station (N=130) were analyzed in order to estimate genotypic and allelic frequencies of three single nucleotide polymorphisms associated to beef quality traits. Two Calpain gene SNP markers, CAPN316 and CAPN4751, and the Charolais private mutation Q204X associated to double-muscling phenotype, were assessed. High frequency of normal allele was observed in CAPN316 (f=0.85) and similar frequencies for normal and favorable alleles in CAPN4751 (f=0.58 and 0.42, respectively). For Q204X, a low prevalence for the double muscling promoter allele was observed (f=0.03) attributable to negative selection criterion over this trait in the last 30 years. Implication and validation effects of the marker effects on the beef production system are discussed. Implementation of marker assisted management could help system development, support creation of quality meat niches and facilitate the increasing profitability for current beef production industry. Foram obtidas amostras de machos da raça Charolês registrado (N=130) candidatos a serem reprodutores para fazendas de cria, manejados em una central de teste de desempenho, com a finalidade de estimar as freqüências genotípicas e gênicas de três marcadores de um só nucleótido, associados com características de qualidade da carne bovina. Foram analisados os polimorfismos do gen da Calpaína, CAPN316 e CAPN4751, e a mutação Q204X, privada da raza charolês, no gen da Miostatina. Foram encontradas freqüências altas do alelo normal na CAPN316 (f= 0.85) e freqüências similares dos alelos normal e mutado para o marcador CAPN4751 (f=0.58 e 0.48, respectivamente). Foi encontrada baixa freqüência da mutação Q204X do gen Miostatina (f=0.03) devido à seleção negativa para a característica de dupla musculatura nos últimos 30 anos. O uso destes marcadores poderia ajudar a incentivar o desenvolvimento e fomento de mercados específicos para qualidade de carne e aumentar a rentabilidade dos sistemas de produção de carne atuais.

Microsatellites within genes have become important because of their association with genetic diseases in humans. A novel microsatellite was identified in the first intron of the bovine myostatin gene. It is characterized by a mononucleotide core motif that exhibits polymorphic sequence variants (from 12 to 21 repeats) within and between some bovine breeds. Structural analysis of the microsatellite region in bovines as well as in closely related species permitted to trace the possible mechanisms for its structural evolution across the order Artiodactyla.

An allelic discrimination assay was designed and used to determine the genotypic and allelic frequencies of the myostatin (MSTN) gene Q204X allele from two Mexican Full-French herds. The assay is a simple high throughput genotyping method that could be applied to investigate the effect of the Q204X allele on the Charolais breed.