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2. Quartet RNA reference materials improve the quality of transcriptomic data through ratio-based profiling

Author

Yu, Ying, Hou, Wanwan, Liu, Yaqing, Wang, Haiyan, Dong, Lianhua, Mai, Yuanbang, Chen, Qingwang, Li, Zhihui, Sun, Shanyue, Yang, Jingcheng, Cao, Zehui, Zhang, Peipei, Zi, Yi, Liu, Ruimei, Gao, Jian, Zhang, Naixin, Li, Jingjing, Ren, Luyao, Jiang, He, Shang, Jun, Zhu, Sibo, Wang, Xiaolin, Qing, Tao, Bao, Ding, Li, Bingying, Li, Bin, Suo, Chen, Pi, Yan, Wang, Xia, Dai, Fangping, Scherer, Andreas, Mattila, Pirkko, Han, Jinxiong, Zhang, Lijun, Jiang, Hui, Thierry-Mieg, Danielle, Thierry-Mieg, Jean, Xiao, Wenming, Hong, Huixiao, Tong, Weida, Wang, Jing, Li, Jinming, Fang, Xiang, Jin, Li, Xu, Joshua, Qian, Feng, Zhang, Rui, Shi, Leming, and Zheng, Yuanting

Published
2024
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3. Multi-omics data integration using ratio-based quantitative profiling with Quartet reference materials

Author

Zheng, Yuanting, Liu, Yaqing, Yang, Jingcheng, Dong, Lianhua, Zhang, Rui, Tian, Sha, Yu, Ying, Ren, Luyao, Hou, Wanwan, Zhu, Feng, Mai, Yuanbang, Han, Jinxiong, Zhang, Lijun, Jiang, Hui, Lin, Ling, Lou, Jingwei, Li, Ruiqiang, Lin, Jingchao, Liu, Huafen, Kong, Ziqing, Wang, Depeng, Dai, Fangping, Bao, Ding, Cao, Zehui, Chen, Qiaochu, Chen, Qingwang, Chen, Xingdong, Gao, Yuechen, Jiang, He, Li, Bin, Li, Bingying, Li, Jingjing, Liu, Ruimei, Qing, Tao, Shang, Erfei, Shang, Jun, Sun, Shanyue, Wang, Haiyan, Wang, Xiaolin, Zhang, Naixin, Zhang, Peipei, Zhang, Ruolan, Zhu, Sibo, Scherer, Andreas, Wang, Jiucun, Wang, Jing, Huo, Yinbo, Liu, Gang, Cao, Chengming, Shao, Li, Xu, Joshua, Hong, Huixiao, Xiao, Wenming, Liang, Xiaozhen, Lu, Daru, Jin, Li, Tong, Weida, Ding, Chen, Li, Jinming, Fang, Xiang, and Shi, Leming

Published
2024
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5. Targeted DNA-seq and RNA-seq of Reference Samples with Short-read and Long-read Sequencing

Author

Gong, Binsheng, Li, Dan, Łabaj, Paweł P., Pan, Bohu, Novoradovskaya, Natalia, Thierry-Mieg, Danielle, Thierry-Mieg, Jean, Chen, Guangchun, Bergstrom Lucas, Anne, LoCoco, Jennifer S., Richmond, Todd A., Tseng, Elizabeth, Kusko, Rebecca, Happe, Scott, Mercer, Timothy R., Pabón-Peña, Carlos, Salmans, Michael, Tilgner, Hagen U., Xiao, Wenzhong, Johann, Jr, Donald J., Jones, Wendell, Tong, Weida, Mason, Christopher E., Kreil, David P., and Xu, Joshua

Published
2024
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7. Extend the benchmarking indel set by manual review using the individual cell line sequencing data from the Sequencing Quality Control 2 (SEQC2) project

Author

Gong, Binsheng, Li, Dan, Zhang, Yifan, Kusko, Rebecca, Lababidi, Samir, Cao, Zehui, Chen, Mingyang, Chen, Ning, Chen, Qiaochu, Chen, Qingwang, Dai, Jiacheng, Gan, Qiang, Gao, Yuechen, Guo, Mingkun, Hariani, Gunjan, He, Yujie, Hou, Wanwan, Jiang, He, Kushwaha, Garima, Li, Jian-Liang, Li, Jianying, Li, Yulan, Liu, Liang-Chun, Liu, Ruimei, Liu, Shiming, Meriaux, Edwin, Mo, Mengqing, Moore, Mathew, Moss, Tyler J., Niu, Quanne, Patel, Ananddeep, Ren, Luyao, Saremi, Nedda F., Shang, Erfei, Shang, Jun, Song, Ping, Sun, Siqi, Urban, Brent J., Wang, Danke, Wang, Shangzi, Wen, Zhining, Xiong, Xiangyi, Yang, Jingcheng, Yin, Lihui, Zhang, Chao, Zhang, Ruolan, Bhandari, Ambica, Cai, Wanshi, Eterovic, Agda Karina, Megherbi, Dalila B., Shi, Tieliu, Suo, Chen, Yu, Ying, Zheng, Yuanting, Novoradovskaya, Natalia, Sears, Renee L., Shi, Leming, Jones, Wendell, Tong, Weida, and Xu, Joshua

Published
2024
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8. In Vivo Screening Unveils Pervasive RNA-Binding Protein Dependencies in Leukemic Stem Cells and Identifies ELAVL1 as a Therapeutic Target.

Author

Vujovic, Ana, de Rooij, Laura, Chahi, Ava, Chen, He, Yee, Brian, Loganathan, Sampath, Liu, Lina, Chan, Derek, Tajik, Amanda, Tsao, Emily, Moreira, Steven, Joshi, Pratik, Xu, Joshua, Wong, Nicholas, Balde, Zaldy, Jahangiri, Soheil, Zandi, Sasan, Dick, John, Minden, Mark, Schramek, Daniel, Yeo, Gene, Hope, Kristin, and Aigner, Stefan

Subjects
Humans, Leukemia, Myeloid, Acute, Cell Differentiation, Hematopoietic Stem Cells, RNA-Binding Proteins, Mitochondrial Precursor Protein Import Complex Proteins, ELAV-Like Protein 1
Abstract

UNLABELLED: Acute myeloid leukemia (AML) is fueled by leukemic stem cells (LSC) whose determinants are challenging to discern from hematopoietic stem cells (HSC) or uncover by approaches focused on general cell properties. We have identified a set of RNA-binding proteins (RBP) selectively enriched in human AML LSCs. Using an in vivo two-step CRISPR-Cas9 screen to assay stem cell functionality, we found 32 RBPs essential for LSCs in MLL-AF9;NrasG12D AML. Loss-of-function approaches targeting key hit RBP ELAVL1 compromised LSC-driven in vivo leukemic reconstitution, and selectively depleted primitive malignant versus healthy cells. Integrative multiomics revealed differentiation, splicing, and mitochondrial metabolism as key features defining the leukemic ELAVL1-mRNA interactome with mitochondrial import protein, TOMM34, being a direct ELAVL1-stabilized target whose repression impairs AML propagation. Altogether, using a stem cell-adapted in vivo CRISPR screen, this work demonstrates pervasive reliance on RBPs as regulators of LSCs and highlights their potential as therapeutic targets in AML. SIGNIFICANCE: LSC-targeted therapies remain a significant unmet need in AML. We developed a stem-cell-adapted in vivo CRISPR screen to identify key LSC drivers. We uncover widespread RNA-binding protein dependencies in LSCs, including ELAVL1, which we identify as a novel therapeutic vulnerability through its regulation of mitochondrial metabolism. This article is highlighted in the In This Issue feature, p. 171.

Published
2023

10. Author Correction: Quartet RNA reference materials improve the quality of transcriptomic data through ratio-based profiling

Author

Yu, Ying, Hou, Wanwan, Liu, Yaqing, Wang, Haiyan, Dong, Lianhua, Mai, Yuanbang, Chen, Qingwang, Li, Zhihui, Sun, Shanyue, Yang, Jingcheng, Cao, Zehui, Zhang, Peipei, Zi, Yi, Liu, Ruimei, Gao, Jian, Zhang, Naixin, Li, Jingjing, Ren, Luyao, Jiang, He, Shang, Jun, Zhu, Sibo, Wang, Xiaolin, Qing, Tao, Bao, Ding, Li, Bingying, Li, Bin, Suo, Chen, Pi, Yan, Wang, Xia, Dai, Fangping, Scherer, Andreas, Mattila, Pirkko, Han, Jinxiong, Zhang, Lijun, Jiang, Hui, Thierry-Mieg, Danielle, Thierry-Mieg, Jean, Xiao, Wenming, Hong, Huixiao, Tong, Weida, Wang, Jing, Li, Jinming, Fang, Xiang, Jin, Li, Xu, Joshua, Qian, Feng, Zhang, Rui, Shi, Leming, and Zheng, Yuanting

Published
2024
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13. Quartet DNA reference materials and datasets for comprehensively evaluating germline variant calling performance

Author

Ren, Luyao, Duan, Xiaoke, Dong, Lianhua, Zhang, Rui, Yang, Jingcheng, Gao, Yuechen, Peng, Rongxue, Hou, Wanwan, Liu, Yaqing, Li, Jingjing, Yu, Ying, Zhang, Naixin, Shang, Jun, Liang, Fan, Wang, Depeng, Chen, Hui, Sun, Lele, Hao, Lingtong, Scherer, Andreas, Nordlund, Jessica, Xiao, Wenming, Xu, Joshua, Tong, Weida, Hu, Xin, Jia, Peng, Ye, Kai, Li, Jinming, Jin, Li, Hong, Huixiao, Wang, Jing, Fan, Shaohua, Fang, Xiang, Zheng, Yuanting, and Shi, Leming

Published
2023
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20. Deep oncopanel sequencing reveals within block position-dependent quality degradation in FFPE processed samples

Author

Zhang, Yifan, Blomquist, Thomas M., Kusko, Rebecca, Stetson, Daniel, Zhang, Zhihong, Yin, Lihui, Sebra, Robert, Gong, Binsheng, Lococo, Jennifer S., Mittal, Vinay K., Novoradovskaya, Natalia, Yeo, Ji-Youn, Dominiak, Nicole, Hipp, Jennifer, Raymond, Amelia, Qiu, Fujun, Arib, Hanane, Smith, Melissa L., Brock, Jay E., Farkas, Daniel H., Craig, Daniel J., Crawford, Erin L., Li, Dan, Morrison, Tom, Tom, Nikola, Xiao, Wenzhong, Yang, Mary, Mason, Christopher E., Richmond, Todd A., Jones, Wendell, Johann, Jr, Donald J., Shi, Leming, Tong, Weida, Willey, James C., and Xu, Joshua

Published
2022
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30. Co-surgeon versus Single-surgeon Outcomes in Free Tissue Breast Reconstruction: A Meta-analysis.

Author

Xu, Joshua, Zhu, Xi Ming, Ng, Kimberly C., Alhefzi, Muayyad M., Avram, Ronen, and Coroneos, Christopher J.

Subjects
*SURGICAL site infections, *SURGICAL complications, *PATIENT reported outcome measures, *SURGICAL flaps, *MEDICAL care, *MAMMAPLASTY
Abstract

Background Autologous breast reconstruction offers superior long-term patient reported outcomes compared with implant-based reconstruction. Universal adoption of free tissue transfer has been hindered by procedural complexity and long operative time with microsurgery. In many specialties, co-surgeon (CS) approaches are reported to decrease operative time while improving surgical outcomes. This systematic review and meta-analysis synthesizes the available literature to evaluate the potential benefit of a CS approach in autologous free tissue breast reconstruction versus single-surgeon (SS). Methods A systematic review and meta-analysis was conducted using PubMed, Embase, and MEDLINE from inception to December 2022. Published reports comparing CS to SS approaches in uni- and bilateral autologous breast reconstruction were identified. Primary outcomes included operative time, postoperative outcomes, processes of care, and financial impact. Risk of bias was assessed and outcomes were characterized with effect sizes. Results Eight retrospective studies reporting on 9,425 patients were included. Compared with SS, CS approach was associated with a significantly shorter operative time (SMD −0.65, 95% confidence interval [CI] −1.01 to −0.29, p < 0.001), with the largest effect size in bilateral reconstructions (standardized mean difference [SMD] −1.02, 95% CI −1.37 to −0.67, p < 0.00001). CS was also associated with a significant decrease in length of hospitalization (SMD −0.39, 95% CI −0.71 to −0.07, p = 0.02). Odds of flap failure or surgical complications including surgical site infection, hematoma, fat necrosis, and reexploration were not significantly different. Conclusion CS free tissue breast reconstruction significantly shortens operative time and length of hospitalization compared with SS approaches without compromising postoperative outcomes. Further research should model processes and financial viability of its adoption in a variety of health care models. [ABSTRACT FROM AUTHOR]

Published
2024
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31. Opponensplasty for Nerve Palsy: A Systematic Review.

Author

Coulshed, Nicholas, Xu, Joshua, Graham, David, and Sivakumar, Brahman

Abstract

Opposition is an essential function of the human thumb to enable fine pinch and grip strength. Loss of opposition can be caused by both congenital and acquired pathology resulting in significant disability. This systematic review aims to compare the different techniques available to restore opposition. A systematic review of opponensplasty techniques was conducted according to Preferred Reporting Items for Systematic Reviews and Meta-analysis guidelines using PubMed, Embase, Medline, and Web of Science. Studies published in English before April 2021 and that reported on original outcomes of opponensplasty techniques used in the context of neurologic dysfunction were eligible for inclusion. A total of 641 articles were included, of which 42 texts were eligible for inclusion with a total cohort of 873 patients. The most commonly used transfers were palmaris longus (PL), extensor indicis proprius (EIP), and flexor digitorum superficialis (FDS). These transfers all demonstrated an improvement in range of motion, pinch strength, and Kapandji scores. Complication rates of 19% and 12% were reported with FDS and EIP transfers, respectively, predominantly related to donor site morbidity. A complication rate of 6% was observed with PL transfers, which was most commonly related to bowstringing. Heterogeneity of outcomes precluded a direct statistical comparison. There is significant heterogeneity in the literature reporting on opponensplasty techniques. There is limited capacity of direct comparison; however, FDS and EIP appear to demonstrate better functional outcomes, at the cost of higher complication rates. Each technique has specific complications and advantages and importance in patient counseling and discussion. Further prospective comparative studies are warranted. [ABSTRACT FROM AUTHOR]

Published
2024
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34. Advancing NGS quality control to enable measurement of actionable mutations in circulating tumor DNA

Author

Willey, James C., Morrison, Tom B., Austermiller, Bradley, Crawford, Erin L., Craig, Daniel J., Blomquist, Thomas M., Jones, Wendell D., Wali, Aminah, Lococo, Jennifer S., Haseley, Nathan, Richmond, Todd A., Novoradovskaya, Natalia, Kusko, Rebecca, Chen, Guangchun, Li, Quan-Zhen, Johann, Donald J., Jr., Deveson, Ira W., Mercer, Timothy R., Wu, Leihong, and Xu, Joshua

Published
2021
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36. The Efficacy of Antegrade Homodigital Neurovascular Island Flaps in Distal Fingertip Reconstruction: A Systematic Literature Review.

Author

Castillo, Tiana, Xu, Joshua, Tiedgen, Alexander, Graham, David J., Lawson, Richard D., and Sivakumar, Brahman S.

Abstract

Background: Antegrade homodigital neurovascular island flaps (AHIFs) are a heterogeneous group of pedicled flaps used for reconstruction of traumatic digital detipping injuries. While numerous single-center studies have documented their use, there are no large or multicentre studies validating their efficacy, applicability, and functional outcomes. We performed a systematic review of the contemporary literature to establish the safety and functional outcomes of this technique. Methods: Electronic searches were performed using PubMED, Embase, and MEDLINE from inception date to October 2020, with further studies identified from study reference lists and independent searches. Relevant studies reported on complications and functional outcomes of the AHIFs, as used for digital detipping injuries. Data were then extracted and analyzed. Results: Twenty-seven studies published between 1974 and 2019 yielded 744 patients. Four studies provided incomplete epidemiologic data, resulting in a total of 559 patients with 584 digital injuries. Index and middle fingers were most frequently involved. Mean final 2-point discrimination (2-PD) was 4.9 mm static and 5.1 mm dynamic, with dynamic 2-PD reported in 2 studies. Mean total active motion of the digit was 200.3°. Mean time to return to work was 6.7 weeks in 10 studies. Flap survivorship was found to be 99.6% in 23 studies. Cold intolerance was the most common complication at 18%, followed by pain and hypersensitivity. Conclusions: Antegrade homodigital neurovascular island flaps provide a safe and effective method of treating distal finger amputations, yielding satisfactory functional outcomes across all ages. Further studies comparing outcomes between the AHIFs and other reconstructive modalities would be useful. [ABSTRACT FROM AUTHOR]

Published
2024
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43. Assessing Technical Performance in Differential Gene Expression Experiments with External Spike-in RNA Control Ratio Mixtures

Author

Munro, Sarah A., Lund, Steve P., Pine, P. Scott, Binder, Hans, Clevert, Djork-Arné, Conesa, Ana, Dopazo, Joaquin, Fasold, Mario, Hochreiter, Sepp, Hong, Huixiao, Jafari, Nederah, Kreil, David P., Łabaj, Paweł P., Li, Sheng, Liao, Yang, Lin, Simon, Meehan, Joseph, Mason, Christopher E., Santoyo, Javier, Setterquist, Robert A., Shi, Leming, Shi, Wei, Smyth, Gordon K., Stralis-Pavese, Nancy, Su, Zhenqiang, Tong, Weida, Wang, Charles, Wang, Jian, Xu, Joshua, Ye, Zhan, Yang, Yong, Yu, Ying, and Salit, Marc

Subjects
Quantitative Biology - Genomics
Abstract

There is a critical need for standard approaches to assess, report, and compare the technical performance of genome-scale differential gene expression experiments. We assess technical performance with a proposed "standard" dashboard of metrics derived from analysis of external spike-in RNA control ratio mixtures. These control ratio mixtures with defined abundance ratios enable assessment of diagnostic performance of differentially expressed transcript lists, limit of detection of ratio (LODR) estimates, and expression ratio variability and measurement bias. The performance metrics suite is applicable to analysis of a typical experiment, and here we also apply these metrics to evaluate technical performance among laboratories. An interlaboratory study using identical samples shared amongst 12 laboratories with three different measurement processes demonstrated generally consistent diagnostic power across 11 laboratories. Ratio measurement variability and bias were also comparable amongst laboratories for the same measurement process. Different biases were observed for measurement processes using different mRNA enrichment protocols., Comment: 65 pages, 6 Main Figures, 33 Supplementary Figures

Published
2014
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44. Accuracy of acetabular component alignment with surgical guidance systems during hip arthroplasty

Author

Xu Joshua, Veltman Ewout S., Chai Yuan, and Walter William L.

Subjects
navigation, hip arthroplasty, optical navigation, inertial navigation, acetabular positioning, Orthopedic surgery, RD701-811
Abstract

Background: Navigation in total hip arthroplasty has been shown to improve acetabular positioning and can decrease the incidence of mal-positioned acetabular components. This study aimed to assess two surgical guidance systems by comparing intra-operative measurements of acetabular component inclination and anteversion with a post-operative CT scan. Methods: We prospectively collected intra-operative navigation data from 102 hips receiving conventional THA or hip resurfacing arthroplasty through either a direct anterior or posterior approach. Two guidance systems were used simultaneously: an inertial navigation system (INS) and an optical navigation system (ONS). Acetabular component anteversion and inclination were measured on a post-operative CT. Results: The average age of the patients was 64 years (range: 24–92) and the average BMI was 27 kg/m2 (range 19–38). 52% had hip surgery through an anterior approach. 98% of the INS measurements and 88% of the ONS measurements were within 10° of the CT measurements. The mean (and standard deviation) of the absolute difference between the postoperative CT and the intra-operative measurements for inclination and anteversion were 3.0° (2.8) and 4.5° (3.2) respectively for the ONS, along with 2.1° (2.3) and 2.4° (2.1) respectively for the INS. There was a significantly lower mean absolute difference to CT for the INS when compared to ONS in both anteversions (p

Published
2023
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45. Cross-oncopanel study reveals high sensitivity and accuracy with overall analytical performance depending on genomic regions

Author

Gong, Binsheng, Li, Dan, Kusko, Rebecca, Novoradovskaya, Natalia, Zhang, Yifan, Wang, Shangzi, Pabón-Peña, Carlos, Zhang, Zhihong, Lai, Kevin, Cai, Wanshi, LoCoco, Jennifer S., Lader, Eric, Richmond, Todd A., Mittal, Vinay K., Liu, Liang-Chun, Johann, Jr, Donald J., Willey, James C., Bushel, Pierre R., Yu, Ying, Xu, Chang, Chen, Guangchun, Burgess, Daniel, Cawley, Simon, Giorda, Kristina, Haseley, Nathan, Qiu, Fujun, Wilkins, Katherine, Arib, Hanane, Attwooll, Claire, Babson, Kevin, Bao, Longlong, Bao, Wenjun, Lucas, Anne Bergstrom, Best, Hunter, Bhandari, Ambica, Bisgin, Halil, Blackburn, James, Blomquist, Thomas M., Boardman, Lisa, Burgher, Blake, Butler, Daniel J., Chang, Chia-Jung, Chaubey, Alka, Chen, Tao, Chierici, Marco, Chin, Christopher R., Close, Devin, Conroy, Jeffrey, Cooley Coleman, Jessica, Craig, Daniel J., Crawford, Erin, del Pozo, Angela, Deveson, Ira W., Duncan, Daniel, Eterovic, Agda Karina, Fan, Xiaohui, Foox, Jonathan, Furlanello, Cesare, Ghosal, Abhisek, Glenn, Sean, Guan, Meijian, Haag, Christine, Hang, Xinyi, Happe, Scott, Hennigan, Brittany, Hipp, Jennifer, Hong, Huixiao, Horvath, Kyle, Hu, Jianhong, Hung, Li-Yuan, Jarosz, Mirna, Kerkhof, Jennifer, Kipp, Benjamin, Kreil, David Philip, Łabaj, Paweł, Lapunzina, Pablo, Li, Peng, Li, Quan-Zhen, Li, Weihua, Li, Zhiguang, Liang, Yu, Liu, Shaoqing, Liu, Zhichao, Ma, Charles, Marella, Narasimha, Martín-Arenas, Rubén, Megherbi, Dalila B., Meng, Qingchang, Mieczkowski, Piotr A., Morrison, Tom, Muzny, Donna, Ning, Baitang, Parsons, Barbara L., Paweletz, Cloud P., Pirooznia, Mehdi, Qu, Wubin, Raymond, Amelia, Rindler, Paul, Ringler, Rebecca, Sadikovic, Bekim, Scherer, Andreas, Schulze, Egbert, Sebra, Robert, Shaknovich, Rita, Shi, Qiang, Shi, Tieliu, Silla-Castro, Juan Carlos, Smith, Melissa, López, Mario Solís, Song, Ping, Stetson, Daniel, Strahl, Maya, Stuart, Alan, Supplee, Julianna, Szankasi, Philippe, Tan, Haowen, Tang, Lin-ya, Tao, Yonghui, Thakkar, Shraddha, Thierry-Mieg, Danielle, Thierry-Mieg, Jean, Thodima, Venkat J., Thomas, David, Tichý, Boris, Tom, Nikola, Garcia, Elena Vallespin, Verma, Suman, Walker, Kimbley, Wang, Charles, Wang, Junwen, Wang, Yexun, Wen, Zhining, Wirta, Valtteri, Wu, Leihong, Xiao, Chunlin, Xiao, Wenzhong, Xu, Shibei, Yang, Mary, Ying, Jianming, Yip, Shun H., Zhang, Guangliang, Zhang, Sa, Zhao, Meiru, Zheng, Yuanting, Zhou, Xiaoyan, Mason, Christopher E., Mercer, Timothy, Tong, Weida, Shi, Leming, Jones, Wendell, and Xu, Joshua

Published
2021
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46. Author Correction: The SEQC2 epigenomics quality control (EpiQC) study

Author

Foox, Jonathan, Nordlund, Jessica, Lalancette, Claudia, Gong, Ting, Lacey, Michelle, Lent, Samantha, Langhorst, Bradley W., Ponnaluri, V. K. Chaithanya, Williams, Louise, Padmanabhan, Karthik Ramaswamy, Cavalcante, Raymond, Lundmark, Anders, Butler, Daniel, Mozsary, Christopher, Gurvitch, Justin, Greally, John M., Suzuki, Masako, Menor, Mark, Nasu, Masaki, Alonso, Alicia, Sheridan, Caroline, Scherer, Andreas, Bruinsma, Stephen, Golda, Gosia, Muszynska, Agata, Łabaj, Paweł P., Campbell, Matthew A., Wos, Frank, Raine, Amanda, Liljedahl, Ulrika, Axelsson, Tomas, Wang, Charles, Chen, Zhong, Yang, Zhaowei, Li, Jing, Yang, Xiaopeng, Wang, Hongwei, Melnick, Ari, Guo, Shang, Blume, Alexander, Franke, Vedran, de Caceres, Inmaculada Ibanez, Rodriguez-Antolin, Carlos, Rosas, Rocio, Davis, Justin Wade, Ishii, Jennifer, Megherbi, Dalila B., Xiao, Wenming, Liao, Will, Xu, Joshua, Hong, Huixiao, Ning, Baitang, Tong, Weida, Akalin, Altuna, Wang, Yunliang, Deng, Youping, and Mason, Christopher E.

Published
2021
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47. A verified genomic reference sample for assessing performance of cancer panels detecting small variants of low allele frequency

Author

Jones, Wendell, Gong, Binsheng, Novoradovskaya, Natalia, Li, Dan, Kusko, Rebecca, Richmond, Todd A., Johann, Jr, Donald J., Bisgin, Halil, Sahraeian, Sayed Mohammad Ebrahim, Bushel, Pierre R., Pirooznia, Mehdi, Wilkins, Katherine, Chierici, Marco, Bao, Wenjun, Basehore, Lee Scott, Lucas, Anne Bergstrom, Burgess, Daniel, Butler, Daniel J., Cawley, Simon, Chang, Chia-Jung, Chen, Guangchun, Chen, Tao, Chen, Yun-Ching, Craig, Daniel J., del Pozo, Angela, Foox, Jonathan, Francescatto, Margherita, Fu, Yutao, Furlanello, Cesare, Giorda, Kristina, Grist, Kira P., Guan, Meijian, Hao, Yingyi, Happe, Scott, Hariani, Gunjan, Haseley, Nathan, Jasper, Jeff, Jurman, Giuseppe, Kreil, David Philip, Łabaj, Paweł, Lai, Kevin, Li, Jianying, Li, Quan-Zhen, Li, Yulong, Li, Zhiguang, Liu, Zhichao, López, Mario Solís, Miclaus, Kelci, Miller, Raymond, Mittal, Vinay K., Mohiyuddin, Marghoob, Pabón-Peña, Carlos, Parsons, Barbara L., Qiu, Fujun, Scherer, Andreas, Shi, Tieliu, Stiegelmeyer, Suzy, Suo, Chen, Tom, Nikola, Wang, Dong, Wen, Zhining, Wu, Leihong, Xiao, Wenzhong, Xu, Chang, Yu, Ying, Zhang, Jiyang, Zhang, Yifan, Zhang, Zhihong, Zheng, Yuanting, Mason, Christopher E., Willey, James C., Tong, Weida, Shi, Leming, and Xu, Joshua

Published
2021
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48. The SEQC2 epigenomics quality control (EpiQC) study

Author

Foox, Jonathan, Nordlund, Jessica, Lalancette, Claudia, Gong, Ting, Lacey, Michelle, Lent, Samantha, Langhorst, Bradley W., Ponnaluri, V. K. Chaithanya, Williams, Louise, Padmanabhan, Karthik Ramaswamy, Cavalcante, Raymond, Lundmark, Anders, Butler, Daniel, Mozsary, Christopher, Gurvitch, Justin, Greally, John M., Suzuki, Masako, Menor, Mark, Nasu, Masaki, Alonso, Alicia, Sheridan, Caroline, Scherer, Andreas, Bruinsma, Stephen, Golda, Gosia, Muszynska, Agata, Łabaj, Paweł P., Campbell, Matthew A., Wos, Frank, Raine, Amanda, Liljedahl, Ulrika, Axelsson, Tomas, Wang, Charles, Chen, Zhong, Yang, Zhaowei, Li, Jing, Yang, Xiaopeng, Wang, Hongwei, Melnick, Ari, Guo, Shang, Blume, Alexander, Franke, Vedran, Ibanez de Caceres, Inmaculada, Rodriguez-Antolin, Carlos, Rosas, Rocio, Davis, Justin Wade, Ishii, Jennifer, Megherbi, Dalila B., Xiao, Wenming, Liao, Will, Xu, Joshua, Hong, Huixiao, Ning, Baitang, Tong, Weida, Akalin, Altuna, Wang, Yunliang, Deng, Youping, and Mason, Christopher E.

Published
2021
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