37 results on '"Y Q, Guan"'
Search Results
2. Application of virtual reality in volumetric cellular visualization.
- Author
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Y. Q. Guan, M. Opas, Y. Y. Cai, X. Zhang, Zhuo Wei Xiong, S. Wong, and Y. T. Lee
- Published
- 2004
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- View/download PDF
3. Developing A Web-enabled and Graphics-enhanced Collaborative Environment for Integrated Research of Cardiovascular and Atherosclerotic Clinical Biology.
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Yiyu Cai, Li Pheng Khoo, Zhuo Wei Xiong, B. F. Lu, Y. Q. Guan, S. Wong, C. R. Cao, T. K. Tan, Kenneth Yu, M. Opas, and Sai Cheong Fok
- Published
- 2003
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- View/download PDF
4. Differences in corneal and anterior segment morphology between diabetic vs. healthy children and adolescents: a systematic review and meta-analysis
- Author
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H-W, Lu, Y-Q, Guan, Y-Z, Yuan, Y-D, Su, and S-M, Zhang
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Cornea ,Adolescent ,Child, Preschool ,Lens, Crystalline ,Diabetes Mellitus ,Humans ,Child ,Refraction, Ocular ,Intraocular Pressure - Abstract
To compare corneal and anterior segment morphology among children and adolescents with and without diabetes.PubMed, Embase and Scopus databases were systematically searched. Studies that were observational in design were considered. Included studies should have been done in young children and/or adolescents and compared relevant outcomes of interest based on the diabetic status. The outcomes of interest were related to corneal morphology, morphology of lens, as well as important characteristics of anterior segment such as depth, pupillary diameter, intra-ocular pressure and axial length. The pooled effect sizes were reported as weighted mean difference (WMD). STATA software was used for statistical analysis.The meta-analysis included 17 studies. Diabetic children had lower corneal endothelial cell density (cells/mm2) (WMD -215.7, 95% CI: -406.5, -24.9), higher central corneal thickness (µm) (WMD 12.66, 95% CI: 5.47, 19.84), higher lenticular thickness (mm) (WMD 0.25, 95% CI: 0.13, 0.36) and density (WMD 3.02, 95% CI: 2.23, 3.81) than non-diabetic children. The anterior chamber depth (mm) (WMD -0.17, 95% CI: -0.24, -0.09) and pupillary diameter (mm) (WMD -0.61, 95% CI: -1.12, -0.10) was significantly reduced in diabetic children, compared to non-diabetic children. No differences in the corneal curvature, corneal diameter, spherical equivalent, intra-ocular pressure, axial length, tear film breakup time and Schirmer test were noted among diabetic and non-diabetic children.Significant structural changes in cornea and lens along with reduction in anterior chamber depth and pupillary diameter were found. These morphological changes may be indication for early and prompt management and underscore the need for more advanced ophthalmological evaluation techniques, in addition to routine examination.
- Published
- 2022
5. 3D Boundary Reconstruction of Mouse Brain Cells.
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Y. Q. Guan, M. Opas, Y. T. Lee, and Yiyu Cai
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- 2006
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6. A Vr Enhanced Collaborative System for 3d Confocal Microscopic Image Processing and Visualization.
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Y. Q. Guan, Y. Y. Cai, M. Opas, Zhuo Wei Xiong, and Y. T. Lee
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- 2006
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7. [Association between alcohol consumption and insomnia in employed floating population in China]
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Y Q, Guan, M, Zhang, X, Zhang, Z P, Zhao, Z J, Huang, C, Li, and L M, Wang
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Adult ,Male ,China ,Young Adult ,Adolescent ,Alcohol Drinking ,Risk Factors ,Sleep Initiation and Maintenance Disorders ,Prevalence ,Humans ,Female ,Middle Aged - Published
- 2021
8. Hypertension Prevalence, Awareness, Treatment, Control, and Associated Factors in the Labor Force Population — China, 2015
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Maigeng Zhou, Y Q Guan, Zhenping Zhao, Chun Li, Jing Wu, Zhengjing Huang, Linhong Wang, Xiao Zhang, Mei Zhang, Youfa Wang, and Limin Wang
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Control treatment ,education.field_of_study ,medicine.medical_specialty ,business.industry ,Public health ,Population ,MEDLINE ,Overweight ,Preplanned Studies ,Hypertension prevalence ,Environmental health ,Medicine ,medicine.symptom ,Risk factor ,General Agricultural and Biological Sciences ,business ,education ,China - Abstract
What is already known about this topic? Hypertension has become a major public health problem worldwide because of its high prevalence and various complications, and it ranks the most important risk factor for cardiovascular diseases (CVDs). What is added by this report? The prevalence, awareness, treatment, and control of hypertension in the labor force population in 2015 in China were 21.4%, 26.1%, 19.6%, and 6.3%, respectively. Hypertension prevalence in the labor force population remains high and the control of hypertension is still very low. What are the implications for public health practice? Effective public health strategies targeting the labor force population, especially older adults, males, and overweight and obese participants are needed for hypertension prevention and control.
- Published
- 2020
9. [Treatment of relapsed and refractory EZB/C3 subtype DLBCL with chidamide in combination of R2-CHOP: a case report]
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L, Yang, W, Zhang, M L, Zhang, K F, Shen, J C, Wang, Y Q, Guan, H D, Cai, Y H, Bao, M, Xiao, J F, Zhou, and M, Zheng
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病例报告 ,Antineoplastic Combined Chemotherapy Protocols ,Benzamides ,Aminopyridines ,Humans ,Lymphoma, Large B-Cell, Diffuse ,Rituximab - Published
- 2021
10. Application of Cascade Hand Detection for Touchless Interaction in Virtual Design.
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Y. Q. Guan, H. S. Tan, F. Furtado, and A. Tan
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- 2012
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11. [Relationship between eating behavior and obesity among Chinese adults]
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C H, Hu, M, Zhang, X, Zhang, Z P, Zhao, Z J, Huang, C, Li, X, Wang, Y Q, Guan, and L M, Wang
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Adult ,Male ,China ,Risk Factors ,Humans ,Female ,Feeding Behavior ,Obesity - Published
- 2020
12. [Association between sleep status and prevalence of major chronic diseases]
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L M, Wang and Y Q, Guan
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Adult ,China ,Time Factors ,Sleep Initiation and Maintenance Disorders ,Chronic Disease ,Prevalence ,Humans ,Sleep - Abstract
Sleep is an important physiological activity. With the changing life style in this modern world, the average duration of sleep in human beings is decreasing, and the prevalence of sleep disorder or insomnia is increasing. Short duration and disorders of sleep or insomnia may often lead to increased prevalence/incidence of major chronic diseases such as hypertension, diabetes, obesity and dyslipidemia. Currently, chronic diseases have become the main causes of death and with high disease burden among the Chinese. In the Healthy China Initiative (2019-2030), prevention and control of chronic diseases including "moving forward" , "slowing down the upward trend of the prevalence of insomnia" as the expected indices and "extending the sleep duration of adults to 7-8 hours a day" as the advocacy index, were all called for. In this group of articles, basic data for sleep status of adults in different regions of the country was provided to help understand the relations between sleep and major chronic diseases, and strategies related to prevention and control of chronic diseases.睡眠是一项重要的生理活动,随着现代生活节奏的不断加快,人们的平均睡眠时间不断减少,睡眠障碍或失眠率日益升高。睡眠时间过少、睡眠障碍或失眠可导致高血压、糖尿病、肥胖和血脂异常等主要慢性病患病/发病率升高。目前,慢性病已经成为我国居民的主要死亡原因和疾病负担,《健康中国行动(2019-2030)》中明确指出:慢性病防控要"关口前移",将"失眠现患率上升趋势减缓"作为预期指标和"成人睡眠7~8小时"作为倡导性指标。本期重点号文章为我国和不同区域居民的睡眠状况提供了基础数据,为睡眠与主要慢性病研究奠定了基础,也为慢性病防控"关口前移"提供了科学依据。.
- Published
- 2020
13. [Status of sleep and influencing factors in employed floating population in China]
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Y Q, Guan, M, Zhang, X, Zhang, Z P, Zhao, Z J, Huang, C, Li, X, Wang, and L M, Wang
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Adult ,Employment ,Male ,China ,Young Adult ,Adolescent ,Risk Factors ,Prevalence ,Humans ,Sleep Deprivation ,Female ,Middle Aged ,Sleep - Published
- 2020
14. [Risk factors and their interaction on cognitive impairment in the elderly in China: case-control study]
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X, Wang, Z H, Wang, S G, Qi, M, Zhang, X, Zhang, Y Q, Guan, C H, Hu, and L M, Wang
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China ,Risk Factors ,Case-Control Studies ,Apolipoprotein E4 ,Humans ,Cognitive Dysfunction ,Middle Aged ,Aged - Published
- 2020
15. Association between sleep duration and hypertension of migrant workers in China: a national cross-sectional surveillance study
- Author
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Chun Li, Mei Zhang, Qian Xiao, Y Q Guan, Zhengjing Huang, Zhenping Zhao, Xiao Zhang, and Limin Wang
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Adult ,Male ,China ,Time Factors ,hypertension ,Epidemiology ,Population ,Diastole ,Survey sampling ,Logistic regression ,Odds ,03 medical and health sciences ,Young Adult ,0302 clinical medicine ,Prevalence ,Medicine ,Humans ,030212 general & internal medicine ,migrant worker ,education ,Aged ,Original Research ,Transients and Migrants ,education.field_of_study ,business.industry ,blood pressure ,General Medicine ,Middle Aged ,Sleep in non-human animals ,Blood pressure ,Cross-Sectional Studies ,sleep duration ,Female ,business ,Sleep ,030217 neurology & neurosurgery ,Demography ,Sleep duration - Abstract
ObjectivesTo examine the relationship between sleep duration and hypertension of migrant workers aged 18–59 years in China.DesignPopulation-based cross-sectional study using a complex survey sampling design.ParticipantsThere were 43 655 subjects in our analysis, after excluding people with missing information for key exposure and outcome variables and abnormal values for sleep duration (≤2 or ≥17 hours).Primary outcome measureHypertension was defined as systolic blood pressure (BP) ≥140 mm Hg and/or diastolic BP ≥90 mm Hg, or self-reported history of hypertension diagnosis in hospitals at the township (community) level or above and use of hypertensive medicine in the last 2 weeks.ResultsOf 43 655 subjects, 15.6% (95% CI 15.1% to 16.1%) of migrant workers had hypertension. The prevalence of hypertension decreased with the increased sleep duration, both in males and females. Logistic regression models, using 7–8 hours sleep/day as the reference, showed a greater odds for hypertension among men and women who reported interaction=0.096). Further stratified by age and migration time, it revealed that among adults less than 45 years old, those sleeping 9 or more hours had adjusted odds for hypertension of 0.82 (95% CI 0.72 to 0.93, pinteraction=0.020),while there was no evidence of an association between sleep duration and hypertension among adults aged 45–59 years. Among adults whose migration time was less than 4.5 years, those sleeping 9 or more hours had adjusted odds for hypertension of 0.80 (95% CI 0.68 to 0.94, pinteraction=0.097).ConclusionThe association between sleep duration and hypertension varies by age. Short sleep duration (
- Published
- 2019
16. [Study of the prevalence and disease burden of chronic disease in the elderly in China]
- Author
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L M, Wang, Z H, Chen, M, Zhang, Z P, Zhao, Z J, Huang, X, Zhang, C, Li, Y Q, Guan, X, Wang, Z H, Wang, and M G, Zhou
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Male ,China ,Chronic Disease ,Prevalence ,Humans ,Female ,Middle Aged ,Aged - Published
- 2019
17. [Medical treatment seeking behaviors and its influencing factors in employed floating population in China]
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Y Q, Guan, M, Zhang, X, Zhang, Z P, Zhao, Z J, Huang, C, Li, and L M, Wang
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Adult ,Employment ,Male ,China ,Young Adult ,Adolescent ,Humans ,Female ,Middle Aged ,Patient Acceptance of Health Care - Published
- 2019
18. Towards a switchable AR/VR near-eye display with accommodation-vergence and eyeglass prescription support
- Author
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Andrei State, Xinxing Xia, Y. Q. Guan, Kishore Rathinavel, Tat-Jen Cham, Henry Fuchs, Praneeth Chakravarthula, School of Computer Science and Engineering, and Institute for Media Innovation (IMI)
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business.product_category ,Computer science ,ComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISION ,Eyeglass prescription ,Holography ,02 engineering and technology ,Vergence ,Virtual reality ,law.invention ,Computer graphics ,law ,0202 electrical engineering, electronic engineering, information engineering ,Computer Graphics ,Image Processing, Computer-Assisted ,Humans ,Computer vision ,Focus (computing) ,Augmented Reality ,business.industry ,Virtual Reality ,020207 software engineering ,Equipment Design ,Computer Graphics and Computer-Aided Design ,Lens (optics) ,Eyeglasses ,Signal Processing ,Computer science and engineering [Engineering] ,Augmented reality ,Computer Vision and Pattern Recognition ,Artificial intelligence ,business ,Accommodation ,Software - Abstract
In this paper, we present our novel design for switchable AR/VR near-eye displays which can help solve the vergence-accommodation-conflict issue. The principal idea is to time-multiplex virtual imagery and real-world imagery and use a tunable lens to adjust focus for the virtual display and the see-through scene separately. With this novel design, prescription eyeglasses for near- and far-sighted users become unnecessary. This is achieved by integrating the wearer's corrective optical prescription into the tunable lens for both virtual display and see-through environment. We built a prototype based on the design, comprised of micro-display, optical systems, a tunable lens, and active shutters. The experimental results confirm that the proposed near-eye display design can switch between AR and VR and can provide correct accommodation for both. NRF (Natl Research Foundation, S’pore) Accepted version
- Published
- 2019
19. Augmented Reality Simulation of Cardiac Circulation Using APPLearn (Heart)
- Author
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Yiyu Cai, Ryan Kyaw Thu Aung Ba, and Y. Q. Guan
- Subjects
Biomedical education ,ComputerSystemsOrganization_COMPUTERSYSTEMIMPLEMENTATION ,Process (engineering) ,Computer science ,media_common.quotation_subject ,education ,020207 software engineering ,02 engineering and technology ,Cadaver ,Human–computer interaction ,Reading (process) ,0202 electrical engineering, electronic engineering, information engineering ,Circulation (currency) ,Augmented reality ,Student learning ,Function (engineering) ,media_common - Abstract
Cardiac circulation is traditionally difficult for students from both high school and colleges to learn biology due its complexity and dynamic process. Cadavers can be used as a good tool for students to learn cardiovascular system. Unfortunately, this approach comes with some major concerns because of the collapsed anatomic structures, and no blood flowing. Also cadavers are normally available only in medical schools. Human subjects especially cardiac patients are ideal for students to learn human circulation from the perspectives of both structures and functions. This, however, is infeasible due to ethical and other constraints. As such most students learn cardiac circulation by reading text books, attending to lectures, viewing images and perhaps manipulating heart models. In this paper, we will present our efforts developing augmented reality (AR) technology to enhance learning of cardiac circulation. More specifically, a book based AR app APPLearn (Heart) is designed to allow each and every student learning the cardiac structure and function by interactive playing.
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- 2018
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20. Towards Efficient 3D Calibration for Different Types of Multi-view Autostereoscopic 3D Displays
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Y. Q. Guan, Andrei State, Xinxing Xia, Tat-Jen Cham, Henry Fuchs, School of Computer Science and Engineering, Computer Graphics International 2018 (CGI 2018), and Institute for Media Innovation (IMI)
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3D Calibration ,Pixel ,business.industry ,Computer science ,Image quality ,ComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISION ,020207 software engineering ,02 engineering and technology ,Stereo display ,01 natural sciences ,Ray ,010309 optics ,Gray code ,Crosstalk ,Autostereoscopy ,0103 physical sciences ,0202 electrical engineering, electronic engineering, information engineering ,Calibration ,Computer science and engineering [Engineering] ,Computer vision ,Artificial intelligence ,business ,Autostereoscopic Displays - Abstract
A novel and efficient 3D calibration method for different types of autostereoscopic multi-view 3D displays is presented in this paper. In our method, a camera is placed at different locations within the viewing volume of a 3D display to capture a series of images that relate to the subset of light rays emitted by the 3D display and arriving at each of the camera positions. Gray code patterns modulate the images shown on the 3D display, helping to significantly reduce the number of images captured by the camera and thereby accelerate the process of calculating the correspondence relationship between the pixels on the 3D display and the locations of the capturing camera. The proposed calibration method has been successfully tested on two different types of multi-view 3D displays and can be easily generalized for calibrating other types of such displays. The experimental results show that this novel 3D calibration method can also be used to improve the image quality by reducing the frequently observed crosstalk that typically exists when multiple users are simultaneously viewing multi-view 3D displays from a range of viewing positions. NRF (Natl Research Foundation, S’pore)
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- 2018
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21. MEG3 is involved in the development of glaucoma through promoting the autophagy of retinal ganglion cells
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W, Sun, Y-N, Li, J-F, Ye, Y-Q, Guan, and S-J, Li
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Retinal Ganglion Cells ,Gene Expression Regulation ,Autophagy ,Hydrostatic Pressure ,Autophagy-Related Proteins ,Apoptosis ,Glaucoma ,RNA, Long Noncoding ,Apoptosis Regulatory Proteins ,Intraocular Pressure ,Cell Line ,Signal Transduction - Abstract
In this study, we aimed at investigating whether MEG3 may be involved in the pathogenesis of glaucoma by regulating the autophagy of retinal ganglion cells (RGCs).We used qRT-PCR to detect the expression of MEG3 in RGC-5s cell line under high hydrostatic pressure. RGC-5s were transfected with a lentiviral vector to achieve MEG3 overexpression or knockdown. The influence of overexpression or inhibition of MEG3 on cell proliferation and apoptosis was observed using CCK-8 test and flow cytometry. After overexpression of MEG3 and/or knockdown of MEG3 or Beclin-1, detection of the expressions of autophagy-related and apoptosis-related proteins was performed using Western blot.MEG3 expression level increased in RGC-5 cells under high hydrostatic pressure, while exogenously decreased MEG3 expression can reverse the impact of the high pressure on RGC-5 cells. Additionally, overexpression of MEG3 can improve Atg3 expression, promote cell apoptosis, inhibit cell proliferation, and enhance autophagy levels. Meanwhile, knockdown of Beclin-1 up-regulated Bcl-2 level.Upregulation of MEG3 is involved in the pathogenesis of glaucoma through promoting apoptosis of retinal ganglion cells, the mechanism of which may be related to the enhanced autophagy levels.
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- 2018
22. Chemical Constituents of Limonium gmelinii Roots
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Y. Q. Guan, Haji Akber Aisa, A. Tuohongerbieke, J. Zhu, G. Sabir, L. L. Shi, and A. Kaiyrkulova
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Limonium gmelinii ,Chemistry ,Chemical constituents ,Botany ,Plant Science ,General Chemistry ,General Biochemistry, Genetics and Molecular Biology - Published
- 2019
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23. Usability Analysis of the Novel Functions to Assist the Senior Customers in Online Shopping
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Lei Meng, Xinjia Yu, Bo Huang, Zhiqi Shen, Y. Q. Guan, Xiaohai Tian, Simon Fauvel, Chunyan Miao, and Cyril Leung
- Subjects
Multimodal search ,business.industry ,Computer science ,media_common.quotation_subject ,05 social sciences ,Flexibility (personality) ,Usability ,02 engineering and technology ,E-commerce ,World Wide Web ,Consistency (negotiation) ,020204 information systems ,0202 electrical engineering, electronic engineering, information engineering ,0501 psychology and cognitive sciences ,business ,Function (engineering) ,Phenomenography ,050107 human factors ,Qualitative research ,media_common - Abstract
Online shopping provides a convenient and diverse shopping experience. However, elderly customers are unable to leverage such benefits due to their age-related impairments or lack of computer knowledges. To solve this problem, we extend our previous e-commerce website design with novel assistance functions including multimodal search and personalized speech feedback. In this paper, we evaluated the usability of these functions through a phenomenography based qualitative study. From the results, we found out several biases which affect senior users’ interaction with the assistance functions. Firstly, there is a gap between the icon metaphor and the senior users’ real world experience. Secondly, consistency is more important than flexibility in e-commerce website design for the elderly. Thirdly, senior users tend to show less interest to explore the website than younger ones. These findings and considerations will guide us in the following rounds of age-friendly assistance function designs to improve the senior user’s online shopping experience.
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- 2018
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24. [Role and mechanisms of cardiomyocyte autophagy in cardiovascular diseases]
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Y, Li, L, Wang, and Y Q, Guan
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Cardiovascular Diseases ,Autophagy ,Humans ,Myocytes, Cardiac - Published
- 2016
25. Adaptive-weighted cubic B-spline using lookup tables for fast and efficient axial resampling of 3D confocal microscopy images
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Yy Cai, Michal Opas, Y. Q. Guan, J. Zheng, and C. Indhumathi
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Microscopy, Confocal ,Histology ,Microscope ,Computer science ,business.industry ,Confocal ,Feature extraction ,Computational Biology ,law.invention ,Mice ,Medical Laboratory Technology ,Imaging, Three-Dimensional ,Optics ,Sampling (signal processing) ,law ,Undersampling ,Cerebellum ,Lookup table ,Image scaling ,Animals ,Anatomy ,business ,Instrumentation ,Algorithm ,Interpolation - Abstract
Confocal laser scanning microscopy has become a most powerful tool to visualize and analyze the dynamic behavior of cellular molecules. Photobleaching of fluorochromes is a major problem with confocal image acquisition that will lead to intensity attenuation. Photobleaching effect can be reduced by optimizing the collection efficiency of the confocal image by fast z-scanning. However, such images suffer from distortions, particularly in the z dimension, which causes disparities in the x, y, and z directions of the voxels with the original image stacks. As a result, reliable segmentation and feature extraction of these images may be difficult or even impossible. Image interpolation is especially needed for the correction of undersampling artifact in the axial plane of three-dimensional images generated by a confocal microscope to obtain cubic voxels. In this work, we present an adaptive cubic B-spline-based interpolation with the aid of lookup tables by deriving adaptive weights based on local gradients for the sampling nodes in the interpolation formulae. Thus, the proposed method enhances the axial resolution of confocal images by improving the accuracy of the interpolated value simultaneously with great reduction in computational cost. Numerical experimental results confirm the effectiveness of the proposed interpolation approach and demonstrate its superiority both in terms of accuracy and speed compared to other interpolation algorithms. Microsc. Res. Tech., 2012. © 2011 Wiley Periodicals, Inc.
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- 2012
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26. An automatic segmentation algorithm for 3D cell cluster splitting using volumetric confocal images
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Yiyu Cai, C. Indhumathi, Y. Q. Guan, and Michal Opas
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Histology ,Computer science ,business.industry ,Confocal ,3D reconstruction ,Process (computing) ,Boundary (topology) ,Higher-order statistics ,Pathology and Forensic Medicine ,Image (mathematics) ,Cluster (physics) ,Computer vision ,Segmentation ,Artificial intelligence ,business ,Algorithm - Abstract
Summary With the rapid advance of three-dimensional (3D) confocal imaging technology, more and more 3D cellular images will be available. Segmentation of intact cells is a critical task in automated image analysis and quantification of cellular microscopic images. One of the major complications in the automatic segmentation of cellular images arises due to the fact that cells are often closely clustered. Several algorithms are proposed for segmenting cell clusters but most of them are 2D based. In other words, these algorithms are designed to segment 2D cell clusters from a single image. Given 2D segmentation methods developed, they can certainly be applied to each image slice with the 3D cellular volume to obtain the segmented cell clusters. Apparently, in such case, the 3D depth information with the volumetric images is not really used. Often, 3D reconstruction is conducted after the individualized segmentation to build the 3D cellular models from segmented 2D cellular contours. Such 2D native process is not appropriate as stacking of individually segmented 2D cells or nuclei do not necessarily form the correct and complete 3D cells or nuclei in 3D. This paper proposes a novel and efficient 3D cluster splitting algorithm based on concavity analysis and interslice spatial coherence. We have taken the advantage of using the 3D boundary points detected using higher order statistics as an input contour for performing the 3D cluster splitting algorithm. The idea is to separate the touching or overlapping cells or nuclei in a 3D native way. Experimental results show the efficiency of our algorithm for 3D microscopic cellular images.
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- 2011
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27. 3D boundary extraction of confocal cellular images using higher order statistics
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Michal Opas, C. Indhumathi, Yiyu Cai, and Y. Q. Guan
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Cell Nucleus ,Neurons ,Microscopy, Confocal ,Histology ,Computer science ,business.industry ,Confocal ,Brain ,Boundary (topology) ,Higher-order statistics ,Image processing ,computer.software_genre ,Thresholding ,Pathology and Forensic Medicine ,Data set ,Mice ,Imaging, Three-Dimensional ,Voxel ,Kurtosis ,Animals ,Computer vision ,Artificial intelligence ,business ,computer - Abstract
Summary In recent years, cell biologists have benefited greatly from using confocal microscopy to study intracellular organelles. For high-level image analysis, 3D boundary extraction of cell structure is a preliminary requisite in confocal cellular imaging. To detect the object boundaries, most investigators have used gradient/Laplacian operator as a principal tool. In this paper we propose a higher order statistics (HOS) based boundary extraction algorithm for confocal cellular image data set using kurtosis. After the initial pre-processing, kurtosis boundary map is estimated locally for the entire volume using a cubic sliding window and subsequently the noisy kurtosis value is removed by thresholding. Voxels having positive kurtosis value with zero-crossing on its surface are then identified as boundary voxels. Typically used in signal processing, kurtosis for 3D cellular image processing is a novel application of HOS. Its reliable and robust nature of computing makes it very suitable for volumetric cellular boundary extraction.
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- 2009
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28. Graphics Native Approach to Identifying Surface Atoms of Macromolecules
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Y. Q. Guan, Yiyu Cai, and Huagen Wan
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Surface (mathematics) ,Theoretical computer science ,Computer science ,Graphics hardware ,Graphics processing unit ,Graphics ,ComputingMethodologies_COMPUTERGRAPHICS ,Rendering (computer graphics) ,Computational science ,Visualization ,Macromolecule ,Accessible surface area - Abstract
Classification of “surface atoms” or “interior atoms” of proteins or other macromolecules is significant for many biochemical tasks, particularly for molecular docking. We present a simple and easy-to-implement algorithm for identifying surface atoms of macromolecules from interior atoms. Unlike existing methods that are based on geometry computations, our approach takes the advantage of graphics hardware, and most of the computations are fulfilled with graphics processing unit (GPU). The algorithm can be easily incorporated within visualization applications for macromolecules to enable the removal of interior atoms from a macromolecular structure, thus simplifying the graphics display and manipulation.
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- 2014
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29. Application of cascade hand detection for touchless interaction in virtual design
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F. Furtado, H. S. Tan, A. Tan, and Y. Q. Guan
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Engineering ,business.industry ,Interactive control ,Image processing ,Object (computer science) ,Computer Graphics and Computer-Aided Design ,Industrial and Manufacturing Engineering ,Computer Science Applications ,law.invention ,Transparency (projection) ,Projector ,law ,Cascade ,Computer graphics (images) ,Trajectory ,Computer vision ,Artificial intelligence ,business ,Software ,Cascading classifiers - Abstract
This paper proposes a method for robust hand detection for interactive touchless display using cascade classifier technique. A hardware system comprising a transparent display, two video cameras and a projector is assembled to generate on-display-surface object images for touchless display. A well-trained cascade of boosted classifiers is applied to detect the position of the hand in the object image. Using this method, accurate and robust hand detection for touchless display can be achieved. The detected hand trajectory information can be converted into mouse and keyboard inputs for interactive control and manipulation in virtual applications like virtual assembly and virtual design.
- Published
- 2012
30. An automatic segmentation algorithm for 3D cell cluster splitting using volumetric confocal images
- Author
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C, Indhumathi, Y Y, Cai, Y Q, Guan, and M, Opas
- Subjects
Automation ,Mice ,Imaging, Three-Dimensional ,Microscopy, Confocal ,Animals ,Brain ,Algorithms - Abstract
With the rapid advance of three-dimensional (3D) confocal imaging technology, more and more 3D cellular images will be available. Segmentation of intact cells is a critical task in automated image analysis and quantification of cellular microscopic images. One of the major complications in the automatic segmentation of cellular images arises due to the fact that cells are often closely clustered. Several algorithms are proposed for segmenting cell clusters but most of them are 2D based. In other words, these algorithms are designed to segment 2D cell clusters from a single image. Given 2D segmentation methods developed, they can certainly be applied to each image slice with the 3D cellular volume to obtain the segmented cell clusters. Apparently, in such case, the 3D depth information with the volumetric images is not really used. Often, 3D reconstruction is conducted after the individualized segmentation to build the 3D cellular models from segmented 2D cellular contours. Such 2D native process is not appropriate as stacking of individually segmented 2D cells or nuclei do not necessarily form the correct and complete 3D cells or nuclei in 3D. This paper proposes a novel and efficient 3D cluster splitting algorithm based on concavity analysis and interslice spatial coherence. We have taken the advantage of using the 3D boundary points detected using higher order statistics as an input contour for performing the 3D cluster splitting algorithm. The idea is to separate the touching or overlapping cells or nuclei in a 3D native way. Experimental results show the efficiency of our algorithm for 3D microscopic cellular images.
- Published
- 2011
31. A System for Capturing, Rendering and Multiplexing Images on Multi-view Autostereoscopic Display
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Jiazhi Xia, Ying He, Hock Soon Tan, and Y. Q. Guan
- Subjects
Liquid-crystal display ,business.industry ,Computer science ,ComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISION ,Stereoscopy ,Image processing ,Stereo display ,law.invention ,Rendering (computer graphics) ,Display device ,law ,Autostereoscopy ,Computer graphics (images) ,Computer vision ,Artificial intelligence ,business ,Image resolution - Abstract
Current trends in digital display technology show a marked interest towards 3D displays, which allow three dimensional images to be conveyed to viewers. Among various 3D display techniques, auto stereoscopic display appears to be promising due to the use of optical trickery at the display, allowing glass-free viewing. However, the cost of generating and transmitting the auto stereoscopic images is usually quite high due to the huge amount of data. Hence, it is challenging to acquire artifact-free 3D images in real-time. This paper presents a system to generate and display high-resolution auto stereoscopic images at full HD resolution, i.e., 1920*1080*24. We show that the video-plus-depth data representation enables a scalable system architecture and efficient data transition. The proposed GPU accelerated depth image-based rendering (DIBR) algorithm and multiplexing algorithm are able to synthesize auto stereoscopic images in real-time. The synthesized images are then displayed on the auto stereoscopic screen that is mounted on a conventional LCD monitor. We demonstrate our system to both indoor activities and natural scenes.
- Published
- 2010
- Full Text
- View/download PDF
32. Adaptive correction technique for 3D reconstruction of fluorescence microscopy images
- Author
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Y. T. Lee, X. Zhang, Yiyu Cai, Michal Opas, and Y. Q. Guan
- Subjects
Histology ,Optical sectioning ,business.industry ,Computer science ,Attenuation ,3D reconstruction ,Brain ,Medical Laboratory Technology ,Light intensity ,Mice ,Optics ,Microscopy, Fluorescence ,Light sheet fluorescence microscopy ,Distortion ,Cerebellum ,Image Processing, Computer-Assisted ,Animals ,Deconvolution ,Anatomy ,business ,Instrumentation ,Interpolation - Abstract
Recent advances in high-resolution imaging have provided valuable novel insights into structural relationships within cells and tissues both in vitro and in vivo. An analysis of this kind is regularly done by optical sectioning using either confocal or deconvolution microscopy. However, the reconstruction of 3D images suffers from light scattering and absorption with increasing depth by finite transparency of the used media. Photobleaching of fluorochromes has been especially troublesome and often the only remedy for loss of signal during optical sectioning is to reduce the number of sections. This causes disparities in the x-y and z dimensions of voxels, which lead to vertical distortion of the original stack of images and necessitates interpolation. Interpolation is necessary to fill up the gaps between consecutive sections in the original image stack to obtain cubic voxels. The present manuscript describes a novel method for adaptive compensation of attenuation of light intensity in stacks of fluorescence microscopy images that is based on a physical model of light attenuation. First, we use a fast interpolation technique to generate a cubic voxel-based volume stack with the aid of a contribution look up table. With the contribution look up table, multiple calculations are avoided, which substantially reduces the computational time without compromising the accuracy of the restoration procedure. Second, each section within the resulting volume is processed to rectify its intensity values that have been altered due to photobleaching and scattering and absorption. The method allows to define the last good section in the stack and the correction is then done automatically.
- Published
- 2007
33. An automatic method for identifying appropriate gradient magnitude for 3D boundary detection of confocal image stacks
- Author
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Yiyu Cai, Michal Opas, Y. T. Lee, and Y. Q. Guan
- Subjects
Histology ,Computer science ,business.industry ,Gauss ,Divergence theorem ,Boundary (topology) ,Image processing ,Function (mathematics) ,Measure (mathematics) ,Edge detection ,Pathology and Forensic Medicine ,Image (mathematics) ,Computer vision ,Artificial intelligence ,business ,Algorithm - Abstract
Gradients play an important role in 2D image processing. Many edge detection algorithms are gradient-based. We are interested in 3D boundary detection which can be considered as an extension of 2D edge detection in 3D space. In this paper, an algorithm to automatically and quantitatively measure the suitability of gradient magnitudes in detection of 3D boundary points of confocal image stacks is presented. A Measurement Function is defined to evaluate the suitability of each gradient magnitude chosen to be the threshold for 3D boundary detection. The application of Gauss's Divergence Theorem provides a solution to calculate the Measurement Function numerically. The gradient magnitude at which the maximum of the Measurement Function is achieved can be utilized as the most appropriate threshold for gradient-based boundary detection and other operations like volume visualization.
- Published
- 2006
34. Developing a Web-enabled and graphics-enhanced collaborative environment for integrated research of cardiovascular and atherosclerotic clinical biology
- Author
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S. Wong, T.K. Tan, L.P. Khoo, B.F. Lu, Y. Q. Guan, K. Yu, Sai Cheong Fok, C.R. Cao, Michal Opas, Z.W. Xiong, and Y.Y. Cai
- Subjects
Web server ,Collaborative software ,business.industry ,Computer science ,computer.software_genre ,Data sharing ,World Wide Web ,Knowledge extraction ,Web application ,System integration ,The Internet ,Perl ,business ,computer ,computer.programming_language - Abstract
Coronary heart disease (CHD) is one of the leading killers worldwide. Lipoprotein and apolipoprotein play an important role in developing CHDs. To tackle the challenging task of CHD lipoprotein and atherosclerotic research, collaborative work is crucial. With an interdiscipline in nature, such research involves bio-chemistry, cardiovascular biology, lipoprotein structure, fluorescent imaging, 3D modelling, data mining, etc. This project aims to create a Web based and integrated solution to support a multi-disciplinary knowledge discovery process for the study of cardiovascular and atherosclerotic biology. The emphasis of the project is to address (1) the sharing of cardiovascular clinical data; and (2) the system integration for CHD cardiovascular research. The system currently under development is mainly implemented on a PC Window platform with an intranet-centric design. An Apache HTTP server, a MySQL SQL server, Perl, and R Language, are employed for the system development independent to hardware platforms. The system offers easy information management and data sharing by multiple parties across Internet. Major datasets include lipoprotein phenotype/genotype and laser confocal images. A user-friendly interface is designed allowing users to deposit, retrieve, visualize and analyze the CHD information from different sites.
- Published
- 2004
- Full Text
- View/download PDF
35. Double-impurity doping-induced quantum critical behaviors in Sr1−xBaxTi1−yRuyO3
- Author
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Tian-Ran Wei, Chunling Zhu, Y. J. Guo, Xingsen Gao, J.-M. Liu, Y. Q. Guan, and K. F. Wang
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Quantum phase transition ,Materials science ,Condensed matter physics ,Doping ,Anharmonicity ,General Physics and Astronomy ,Ferroelectricity ,Condensed Matter::Materials Science ,Condensed Matter::Superconductivity ,Quantum critical point ,Condensed Matter::Strongly Correlated Electrons ,Ising model ,Quantum ,Quantum fluctuation - Abstract
It has been reported both experimentally and theoretically that the Ba(2+)-doping at the A-site of quantum paraelectric SrTiO(3) suppresses the quantum fluctuations by activating the ferroelectric mode, while the Ru(4+)-doping at the B-site plays the opposite role. For a double-impurity doped SrTiO(3), i. e., Sr(1-x)Ba(x)Ti(1-y)Ru(y)O(3), where the two types of opposite effects compete with each other, we propose an improved transverse-field Ising model in order to investigate the effect of the double-impurity doping on the quantum phase transitions and critical behaviors. The calculated quantum behavior is quite well consistent with experimental measurements. A linear relationship between the quantum critical doping concentrations for Ba(2+) and Ru(4+) is predicted, subsequently validated qualitatively by an anharmonic oscillator model. (C) 2010 American Institute of Physics. [doi: 10.1063/1.3361080]
- Published
- 2010
- Full Text
- View/download PDF
36. Cloning of GL-7-ACA acylase gene from Pseudomonas sp. 130 and its expression in Escherichia coli
- Author
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Y L, Yang, D F, Yun, Y Q, Guan, H L, Peng, J M, Chen, Y S, He, and R C, Jiao
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DNA, Bacterial ,Electrophoresis, Agar Gel ,Base Sequence ,Chromatography, Paper ,Pseudomonas ,Molecular Sequence Data ,Escherichia coli ,Radioimmunoassay ,Gene Expression Regulation, Bacterial ,Penicillin Amidase ,Cloning, Molecular ,Amidohydrolases ,Plasmids - Abstract
Using BamHI digested and dephosphorylated pBR322 as vector, a GL-7-ACA acylase gene from Pseudomonas sp. 130 chromosomal DNA was cloned and expressed in Escherichia coli C600. Seven positive clones were detected from 3205 recombinant plasmids with 32P-labeled oligonucleotide probes in situ hybridization. Out of them, three clones which produced active GL-7-ACA acylase were identified by radio-immunological assay, chemical test and chromatographic analysis of reaction mixture. The plasmid DNAs of recombinant pMR5, pMR6 and pMR7 were extracted. Analysis of gel electrophoresis indicated that pMR5 and pMR7 contained the same 6.8kb fragment and the size of the insert in pNR6 was 5.7 kb. The effects of various E. coli hosts on the expression of cloned GL-7-ACA acylase gene is also presented.
- Published
- 1991
37. Preparation of high purity IgG and its application in screening for clones positive for Vibrio succinogenes L-asparaginase gene
- Author
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Y Q, Guan, H L, Pong, Y S, He, J M, Chen, and K Q, Ren
- Subjects
Genomic Library ,Immunodiffusion ,Immunoglobulin G ,Blotting, Western ,Asparaginase ,Enzyme-Linked Immunosorbent Assay ,Cloning, Molecular ,Immunoelectrophoresis ,Vibrio - Abstract
A previous paper reported application of L-asparaginase IgG from Vibrio succinogenes in screening for positive clones. This paper describes the detailed procedure for preparation of high-purity IgG, an essential step of which involves coupling of a cell-free extract of host E. coli Y 1090 to Sepharose 4B beads and adsorption of the non-specific antigen components by passage of the polyvalent IgG through this affinity column. The IgG thus obtained exhibited improved specificity and was utilized as a radioimmunologic and horseradish peroxidase-linked immunologic probe in screening for positive clones. These IgG probes had the advantages of low background, high sensitivity, and good reliability.
- Published
- 1989
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