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Basing on scientific publications and original research the authors specified the effect of incorporation and adsorption of different ions and water molecules on physical, chemical and mechanical properties of bioapatite and determined new directions for investigations of intercrystallite interactions in nanoscale. Inner structure of the apatite crystallites more adaptable to chemical substitutions in comparison with other minerals controls their important characteristics such as a size, solubility, hardness, fragility, formability and thermal stability. The water molecules incorporated in crystallites and adsorbed on their surfaces stabilize them. In case the distances between crystallites become shorter than 10 nm the water molecules adsorbed on their surface play dominant role in bonding between the crystallites. This bond determines the main mechanical properties of bones. We bring forward a suggestion that theoretical model developed on the basis of near edge X-ray spectroscopic studies of bones using the contemporary high brilliant sources of X-ray radiation (synchrotrons and X-ray free electrons lasers) will allow to receive new quantitative data on local electronic and atomic structure (coordination numbers, ionic charges, interatomic distances interatomic and intercrystallite forces) of nanoelements in osseous tissue. The investigation results must bring to construction of new morphologically correct model providing deeper understanding of processes occurring in mineral matrix and mechanical properties of bones.