98 results on '"Yaka R"'
Search Results
2. Variable kinship patterns in Neolithic Anatolia revealed by ancient genomes
- Author
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Yaka, R., Mapelli, I., Kaptan, D., Doğu, A., Chyleński, M., Erdal, Ö., Koptekin, D., Vural, K., Bayliss, A., Mazzucato, C., Fer, E., Çokoğlu, S., Lagerholm, V., Krzewińska, M., Karamurat, C., Gemici, H., Sevkar, A., Dağtaş, N., Kılınç, G., Adams, D., Munters, A., Sağlıcan, E., Milella, M., Schotsmans, E., Yurtman, E., Çetin, M., Yorulmaz, S., Altınışık, N., Ghalichi, A., Juras, A., Bilgin, C., Günther, T., Storå, J., Jakobsson, M., de Kleijn, M., Mustafaoğlu, G., Fairbairn, A., Pearson, J., Togan, İ., Kayacan, N., Marciniak, A., Larsen, C., Hodder, I., Atakuman, Ç., Pilloud, M., Sürer, E., Gerritsen, F., Özbal, R., Baird, D., Erdal, Y., Duru, G., Özbaşaran, M., Haddow, S., Knüsel, C., Götherström, A., Özer, F., and Somel, M.
- Abstract
The social organization of the first fully sedentary societies that emerged during the Neolithic period in Southwest Asia remains enigmatic,1 mainly because material culture studies provide limited insight into this issue. However, because Neolithic Anatolian communities often buried their dead beneath domestic buildings,2 household composition and social structure can be studied through these human remains. Here, we describe genetic relatedness among co-burials associated with domestic buildings in Neolithic Anatolia using 59 ancient genomes, including 22 new genomes from A??kl? Höyük and Çatalhöyük. We infer pedigree relationships by simultaneously analyzing multiple types of information, including autosomal and X chromosome kinship coefficients, maternal markers, and radiocarbon dating. In two early Neolithic villages dating to the 9th and 8th millennia BCE, A??kl? Höyük and Boncuklu, we discover that siblings and parent-offspring pairings were frequent within domestic structures, which provides the first direct indication of close genetic relationships among co-burials. In contrast, in the 7th millennium BCE sites of Çatalhöyük and Barc?n, where we study subadults interred within and around houses, we find close genetic relatives to be rare. Hence, genetic relatedness may not have played a major role in the choice of burial location at these latter two sites, at least for subadults. This supports the hypothesis that in Çatalhöyük,3?5 and possibly in some other Neolithic communities, domestic structures may have served as burial location for social units incorporating biologically unrelated individuals. Our results underscore the diversity of kin structures in Neolithic communities during this important phase of sociocultural development. Results and discussion - Increased genetic diversity from the Aceramic to the Ceramic period - Estimating pedigree relationships among Neolithic co-burials - Co-buried pairs in Aceramic period sites frequently include relatives - Relatives are rare among Catalhoyuk and Barcın intramural burials - Temporal or age-dependent variability in co-burial kinship patterns - Varying traditions linking sex and space STAR+Methods
- Published
- 2021
3. Inactivation of PKMζ in the NAc Shell Abolished Cocaine-Conditioned Reward
- Author
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Shabashov, D., Shohami, E., and Yaka, R.
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- 2012
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4. Pathological and experimentally induced blindness induces auditory activity in the cat primary visual cortex
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Yaka, R., Yinon, U., Rosner, M., and Wollberg, Z.
- Published
- 2000
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5. Erratum to: Pathological and experimentally induced blindness induces auditory activity in the cat primary visual cortex
- Author
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Yaka, R., Wollberg, Z., Yinon, U., and Rosner, M.
- Published
- 2000
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6. Inactivation of PKMζ in the NAc Shell Abolished Cocaine-Conditioned Reward
- Author
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Shabashov, D., primary, Shohami, E., additional, and Yaka, R., additional
- Published
- 2011
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7. P.1.039 Lateral habenula stimulation restores glutamate receptor subunits levels in the ventral tegmental area and inhibits cocaine seeking behaviour
- Author
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Lax, E., primary, Friedman, A., additional, Dikshtein, Y., additional, Abraham, L., additional, Flaumenhaft, Y., additional, Sudai, E., additional, Ben-Tzion, M., additional, Ami-Ad, L., additional, Yaka, R., additional, and Yadid, G., additional
- Published
- 2011
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8. Lyn Kinase Regulates Mesolimbic Dopamine Release: Implication for Alcohol Reward
- Author
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Gibb, S. L., primary, Jeanblanc, J., additional, Barak, S., additional, Yowell, Q. V., additional, Yaka, R., additional, and Ron, D., additional
- Published
- 2011
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9. Dopamine inhibits GABAA currents in ventral tegmental area dopamine neurons via activation of presynaptic G-protein coupled inwardly-rectifying potassium channels
- Author
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Michaeli, A., primary and Yaka, R., additional
- Published
- 2010
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10. Prolonged Withdrawal from Repeated Noncontingent Cocaine Exposure Increases NMDA Receptor Expression and ERK Activity in the Nucleus Accumbens
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Schumann, J., primary and Yaka, R., additional
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- 2009
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11. Membrane Lipid Modulations Remove Divalent Open Channel Block from TRP-Like and NMDA Channels
- Author
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Parnas, M., primary, Katz, B., additional, Lev, S., additional, Tzarfaty, V., additional, Dadon, D., additional, Gordon-Shaag, A., additional, Metzner, H., additional, Yaka, R., additional, and Minke, B., additional
- Published
- 2009
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12. Tempol diminishes cocaine-induced oxidative damage and attenuates the development and expression of behavioral sensitization
- Author
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Numa, R., primary, Kohen, R., additional, Poltyrev, T., additional, and Yaka, R., additional
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- 2008
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13. Cocaine Enhances NMDA Receptor-Mediated Currents in Ventral Tegmental Area Cells via Dopamine D5 Receptor-Dependent Redistribution of NMDA Receptors
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Schilstrom, B., primary, Yaka, R., additional, Argilli, E., additional, Suvarna, N., additional, Schumann, J., additional, Chen, B. T., additional, Carman, M., additional, Singh, V., additional, Mailliard, W. S., additional, Ron, D., additional, and Bonci, A., additional
- Published
- 2006
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14. S.07.02 Prenatal stress in rats attenuates hippocampal long-term potentiation and induces deficits in synaptic plasticity
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Salomon, S., primary, Matzner, H., additional, Yaka, R., additional, and Weinstock, M., additional
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- 2006
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15. Localization of the scaffolding protein RACK1 in the developing and adult mouse brain
- Author
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Ashique, A.M., primary, Kharazia, V., additional, Yaka, R., additional, Phamluong, K., additional, Peterson, A.S., additional, and Ron, D., additional
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- 2006
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16. Visual and auditory properties of cortical cells in the suprasylvian area of the cat
- Author
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Notkin, N., primary, Yaka, R., additional, and Yinon, U., additional
- Published
- 1997
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17. Dopamine inhibits GABAA currents in ventral tegmental area dopamine neurons via activation of presynaptic G-protein coupled inwardly-rectifying potassium channels
- Author
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Michaeli, A. and Yaka, R.
- Subjects
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DOPAMINERGIC neurons , *GABA receptors , *PRESYNAPTIC receptors , *POTASSIUM channels , *G proteins , *REWARD (Psychology) , *CELLULAR signal transduction , *NEURONS - Abstract
Abstract: Dopamine (DA) neurons in the ventral tegmental area (VTA) constitute the origin of major dopaminergic neural pathways associated with essential functions including reward, motivation and cognition. Hence, regulation of VTA DA neurons'' excitability is of important significance. Like other neurons, the activity level of VTA DA neurons is considerably determined by excitatory and inhibitory synaptic inputs. Here we show that DA itself, the most available modulator in the VTA, causes an inhibition of GABA receptor type A (GABAAR)-mediated evoked-IPSC (eIPSC) recorded from rat VTA DA neurons. The DA-induced inhibition was accomplished by activation of DA receptors, known to inhibit adenylyl cyclase activity (D2-like receptors), and was absent when these receptors were blocked. Moreover, blocking of either GABA receptor type B (GABABR) or G-protein coupled inwardly-rectifying potassium (GIRK) channels was also found to effectively prevent the DA-induced inhibition of GABAAR eIPSC. In addition, we found that DA changes the values of both paired-pulse ratio (PPR) and coefficient of variation (CV) of GABAAR eIPSC amplitude, similar to the changes obtained by lowering the extracellular calcium concentration. Taken together, we propose that activation of D2-like receptors and GABABR in the VTA enhances presynaptic GIRK channels activity, which in turn leads to reduced GABA release. The consequence of reduced GABA release on VTA DA neurons may contribute to their increased activity. Accordingly, a novel potential regulatory form of VTA DA neurons'' excitability, which involves presynaptic potassium channels, is proposed. [Copyright &y& Elsevier]
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- 2010
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18. Prenatal stress in rats attenuates hippocampal long-term potentiation and induces deficits in synaptic plasticity
- Author
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Salomon, S., Nachum-Biala, Y., Bogush, Y., Lineal, M., Matzner, H., Yaka, R., and Weinstock, M.
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- 2006
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19. Scaffolding of Fyn kinase to the NMDA receptor determines brain region sensitivity to ethanol.
- Author
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Yaka, R., Phamluong, K., and Ron, D.
- Published
- 2005
20. Prenatal stress in rats attenuates hippocampal long-term potentiation (LTP) and induces deficifs in synaptic plasticity and spatial memory.
- Author
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Bogoch, Y., Nachum-Biala, Y., Salomon, S., Matzner, H., Yaka, R., Linial, M., and Weinstock, M.
- Published
- 2005
21. Five centuries of consanguinity, isolation, health, and conflict in Las Gobas: A Northern Medieval Iberian necropolis.
- Author
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Rodríguez-Varela R, Yaka R, Pochon Z, Sanchez-Pinto I, Solaun JL, Naidoo T, Guinet B, Pérez-Ramallo P, Lagerholm VK, de Anca Prado V, Valdiosera C, Krzewińska M, Herrasti L, Azkarate A, and Götherström A
- Subjects
- Humans, Spain, History, Medieval, Phylogeny, Archaeology, Female, Male, Animals, Consanguinity
- Abstract
Between the 8th and 11th centuries CE, the Iberian Peninsula underwent profound upheaval due to the Umayyad invasion against the Visigoths, resulting in population shifts and lasting demographic impacts. Our understanding of this period is hindered by limited written sources and few archaeogenetic studies. We analyzed 33 individuals from Las Gobas, a necropolis in northern Spain, spanning the 7th to 11th centuries. By combining archaeological and osteological data with kinship, metagenomics, and ancestry analyses, we investigate conflicts, health, and demography of these individuals. We reveal intricate family relationships and genetic continuity within a consanguineous population while also identifying several zoonoses indicative of close interactions with animals. Notably, one individual was infected with a variola virus phylogenetically clustering with the northern European variola complex between ~885 and 1000 CE. Last, we did not detect a significant increase of North African or Middle East ancestries over time since the Islamic conquest of Iberia, possibly because this community remained relatively isolated.
- Published
- 2024
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22. A discrete subpopulation of PFC-LHb neurons govern cocaine place preference.
- Author
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Abdel-Hay N, Kabirova M, and Yaka R
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- Animals, Male, Cocaine-Related Disorders physiopathology, Cocaine-Related Disorders metabolism, Neural Pathways, Rats, Proto-Oncogene Proteins c-fos metabolism, Phosphorylation, Ventral Tegmental Area metabolism, Behavior, Animal, Prefrontal Cortex metabolism, Cocaine pharmacology, Reward, Habenula metabolism, Neurons metabolism, Receptors, AMPA metabolism, Optogenetics
- Abstract
Addiction is a complex behavioral disorder characterized by compulsive drug-seeking and drug use despite harmful consequences. The prefrontal cortex (PFC) plays a crucial role in cocaine addiction, involving decision-making, impulse control, memory, and emotional regulation. The PFC interacts with the brain's reward system, including the ventral tegmental area (VTA) and nucleus accumbens (NAc). The PFC also projects to the lateral habenula (LHb), a brain region critical for encoding negative reward and regulating the reward system. In the current study, we examined the role of PFC-LHb projections in regulating cocaine reward-related behaviors. We found that optogenetic stimulation of the PFC-LHb circuit during cocaine conditioning abolished cocaine preference without causing aversion. In addition, increased c-fos expression in LHb neurons was observed in animals that received optic stimulation during cocaine conditioning, supporting the circuit's involvement in cocaine preference regulation. Molecular analysis in animals that received optic stimulation revealed that cocaine-induced alterations in the expression of GluA1 subunit of AMPA receptor was normalized to saline levels in a region-specific manner. Moreover, GluA1 serine phosphorylation on S845 and S831 were differentially altered in LHb and VTA but not in the PFC. Together these findings highlight the critical role of the PFC-LHb circuit in controlling cocaine reward-related behaviors and shed light on the underlying mechanisms. Understanding this circuit's function may provide valuable insights into addiction and contribute to developing targeted treatments for substance use disorders., (© 2024. The Author(s).)
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- 2024
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23. Benchmarking kinship estimation tools for ancient genomes using pedigree simulations.
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Aktürk Ş, Mapelli I, Güler MN, Gürün K, Katırcıoğlu B, Vural KB, Sağlıcan E, Çetin M, Yaka R, Sürer E, Atağ G, Çokoğlu SS, Sevkar A, Altınışık NE, Koptekin D, and Somel M
- Subjects
- Humans, Gene Frequency, DNA, Ancient analysis, Computer Simulation, Genetics, Population methods, Computational Biology methods, Pedigree, Benchmarking methods, Polymorphism, Single Nucleotide
- Abstract
There is growing interest in uncovering genetic kinship patterns in past societies using low-coverage palaeogenomes. Here, we benchmark four tools for kinship estimation with such data: lcMLkin, NgsRelate, KIN, and READ, which differ in their input, IBD estimation methods, and statistical approaches. We used pedigree and ancient genome sequence simulations to evaluate these tools when only a limited number (1 to 50 K, with minor allele frequency ≥0.01) of shared SNPs are available. The performance of all four tools was comparable using ≥20 K SNPs. We found that first-degree related pairs can be accurately classified even with 1 K SNPs, with 85% F
1 scores using READ and 96% using NgsRelate or lcMLkin. Distinguishing third-degree relatives from unrelated pairs or second-degree relatives was also possible with high accuracy (F1 > 90%) with 5 K SNPs using NgsRelate and lcMLkin, while READ and KIN showed lower success (69 and 79% respectively). Meanwhile, noise in population allele frequencies and inbreeding (first-cousin mating) led to deviations in kinship coefficients, with different sensitivities across tools. We conclude that using multiple tools in parallel might be an effective approach to achieve robust estimates on ultra-low-coverage genomes., (© 2024 The Authors. Molecular Ecology Resources published by John Wiley & Sons Ltd.)- Published
- 2024
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24. Comparison and optimization of protocols and whole-genome capture conditions for ancient DNA samples.
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Yaka R, Maja Krzewińska, Lagerholm VK, Linderholm A, Özer F, Somel M, and Götherström A
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- Humans, Gene Library, Sequence Analysis, DNA methods, Silicon Dioxide chemistry, DNA, Ancient analysis, DNA, Ancient isolation & purification, Genome, Human genetics
- Abstract
Ancient DNA (aDNA) obtained from human remains is typically fragmented and present in relatively low amounts. Here we investigate a set of optimal methods for producing aDNA data by comparing silica-based DNA extraction and aDNA library preparation protocols. We also test the efficiency of whole-genome enrichment (WGC) on ancient human samples by modifying a number of parameter combinations. We find that the Dabney extraction protocol performs significantly better than alternatives. We further observed a positive trend with the BEST library protocol indicating lower clonality. Notably, our results suggest that WGC is effective at retrieving endogenous DNA, particularly from poorly-preserved human samples, by increasing human endogenous proportions by 5x. Thus, aDNA studies will be most likely to benefit from our results.
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- 2024
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25. Activation of nucleus accumbens projections to the ventral tegmental area alters molecular signaling and neurotransmission in the reward system.
- Author
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Khayat A and Yaka R
- Abstract
The nucleus accumbens (NAc) and the ventral tegmental area (VTA) are integral brain regions involved in reward processing and motivation, including responses to drugs of abuse. Previously, we have demonstrated that activation of NAc-VTA afferents during the acquisition of cocaine conditioned place preference (CPP) reduces the rewarding properties of cocaine and diminished the activity of VTA dopamine neurons. In the current study, we examined the impact of enhancing these inhibitory inputs on molecular changes and neurotransmission associated with cocaine exposure. Our results unveiled significant reductions in extracellular signal-regulated kinase (ERK) levels in the VTA and medial prefrontal cortex (mPFC) of both cocaine-treated groups compared with the saline control group. Furthermore, optic stimulation of NAc-VTA inputs during cocaine exposure decreased the expression of GluA1 subunit of AMPA receptor in the VTA and mPFC. Notably, in the NAc, cocaine exposure paired with optic stimulation increased ERK levels and reduced GluA1 phosphorylation at Ser845 as compared with all other groups. Additionally, both cocaine-treated groups exhibited decreased levels of GluA1 phosphorylation at Ser831 in the NAc compared with the saline control group. Moreover, cocaine exposure led to reduced ERK, GluA1, and GluA1 phosphorylation at Ser845 and Ser831 in the mPFC. Augmentation of GABAergic tone from the NAc during cocaine conditioning mitigated changes in GluA1 phosphorylation at Ser845 in the mPFC but reduced ERK, GluA1, and GluA1 phosphorylation at Ser831 compared with the saline control group. Interestingly, enhancing GABAergic tone during saline conditioning decreased GluA1 phosphorylation at Ser831 compared with the saline control group in the mPFC. Our findings highlight the influence of modulating inhibitory inputs from the NAc to the VTA on molecular signaling and glutamatergic neurotransmission in cocaine-exposed animals. Activation of these inhibitory inputs during cocaine conditioning induced alterations in key signaling molecules and AMPA receptor, providing valuable insights into the neurobiological mechanisms underlying cocaine reward and cocaine use disorder. Further exploration of these pathways may offer potential therapeutic targets for the treatment of substance use disorder., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2024 Khayat and Yaka.)
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- 2024
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26. N-Oleoyl Glycine and Its Derivatives Attenuate the Acquisition and Expression of Cocaine-Induced Behaviors.
- Author
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Shahen-Zoabi S, Smoum R, Beiser T, Nemirovski A, Mechoulam R, and Yaka R
- Subjects
- Mice, Animals, Glycine pharmacology, Glycine metabolism, Endocannabinoids metabolism, Reward, Nucleus Accumbens metabolism, Cocaine pharmacology, Cocaine metabolism
- Abstract
Introduction: The endocannabinoid system (ECS) plays a key modulatory role during synaptic plasticity and homeostatic processes in the brain and plays an important role in the neurobiological processes underlying drug addiction. Impaired endocannabinoid (eCB) signaling contributes to dysregulated synaptic plasticity, increased stress responsivity, and craving that propel addiction. Therefore, we hypothesized that boosting the ECS by exogenous administration of selective eCBs will attenuate cocaine-induced behaviors. Materials and Methods: The behavioral paradigms included psychomotor sensitization (PS) and conditioned place preference (CPP). Liquid chromatography-mass spectrometry analysis was used for quantitative profiling of eCBs in mouse brain. Results: We first measured the levels of eCBs in different brain areas of the reward system following chronic cocaine treatment. We found that following daily administration of cocaine, the levels of N-oleoyl glycine (OlGly) were significantly elevated in the nucleus accumbens (NAc) in a region-specific manner. We next tested whether administration of OlGly will attenuate cocaine-induced behaviors. We found that administration of OlGly during withdrawal, but not during acquisition of PS, attenuated the expression of cocaine sensitization. In addition, the administration of OlGly during the acquisition of cocaine CPP, but not during withdrawal, attenuated the expression of cocaine-conditioned reward. To enhance the stability of OlGly and its duration of action, two methylated derivatives of OlGly were synthesized, the monomethylated OlGly (HU-595) and dimethylated OlGly (HU-596). We found that the effect of administration of HU-595 or HU-596 during cocaine conditioning did not differ from the OlGly-induced decrease in the expression of CPP. Conclusion: Our findings suggest that the ECS is involved in the common neurobiological mechanisms underlying the development and expression of cocaine reward and drug-seeking. Boosting the ECS exogenously has beneficial effects against cocaine-induced behaviors.
- Published
- 2023
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27. N-oleoyl glycine and N-oleoyl alanine attenuate alcohol self-administration and preference in mice.
- Author
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Shahen-Zoabi S, Smoum R, Bingor A, Grad E, Nemirovski A, Shekh-Ahmad T, Mechoulam R, and Yaka R
- Subjects
- Mice, Animals, Ethanol metabolism, Brain, Nucleus Accumbens, Reward, Ventral Tegmental Area, Glycine pharmacology, Glycine metabolism, Cocaine
- Abstract
The endocannabinoid system (ECS) plays a key modulatory role during synaptic plasticity and homeostatic processes in the brain and has an important role in the neurobiological processes underlying drug addiction. We have previously shown that an elevated ECS response to psychostimulant (cocaine) is involved in regulating the development and expression of cocaine-conditioned reward and sensitization. We therefore hypothesized that drug-induced elevation in endocannabinoids (eCBs) and/or eCB-like molecules (eCB-Ls) may represent a protective mechanism against drug insult, and boosting their levels exogenously may strengthen their neuroprotective effects. Here, we determine the involvement of ECS in alcohol addiction. We first measured the eCBs and eCB-Ls levels in different brain reward system regions following chronic alcohol self-administration using LC-MS. We have found that following chronic intermittent alcohol consumption, N-oleoyl glycine (OlGly) levels were significantly elevated in the prefrontal cortex (PFC), and N-oleoyl alanine (OlAla) was significantly elevated in the PFC, nucleus accumbens (NAc) and ventral tegmental area (VTA) in a region-specific manner. We next tested whether exogenous administration of OlGly or OlAla would attenuate alcohol consumption and preference. We found that systemic administration of OlGly or OlAla (60 mg/kg, intraperitoneal) during intermittent alcohol consumption significantly reduced alcohol intake and preference without affecting the hedonic state. These findings suggest that the ECS negatively regulates alcohol consumption and boosting selective eCBs exogenously has beneficial effects against alcohol consumption and potentially in preventing relapse., (© 2023. The Author(s).)
- Published
- 2023
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28. A functional eEF2K-eEF2 pathway in the NAc is critical for the expression of cocaine-induced psychomotor sensitisation and conditioned place preference.
- Author
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Beiser T, Lisniansky E, Weitz M, Bingor A, Grad E, Rosenblum K, Thornton C, and Yaka R
- Subjects
- Animals, Mice, RNA, Small Interfering metabolism, Peptide Elongation Factor 2 genetics, Peptide Elongation Factor 2 metabolism, Conditioning, Classical, Phosphorylation, Nucleus Accumbens metabolism, Elongation Factor 2 Kinase genetics, Elongation Factor 2 Kinase metabolism, Cocaine pharmacology
- Abstract
Recent evidence links synaptic plasticity and mRNA translation, via the eukaryotic elongation factor 2 kinase (eEF2K) and its only known substrate, eEF2. However, the involvement of the eEF2 pathway in cocaine-induced neuroadaptations and cocaine-induced behaviours is not known. Knock-in (KI) mice and shRNA were used to globally and specifically reduce eEF2K expression. Cocaine psychomotor sensitization and conditioned place preference were used to evaluate behavioural outcome. Changes in eEF2 phosphorylation were determined by western blot analyses. No effect was observed on the AMPA/NMDA receptor current ratio in the ventral tegmental area, 24 h after cocaine injection in eEF2K-KI mice compared with WT. However, development and expression of cocaine psychomotor sensitization were decreased in KI mice. Phosphorylated eEF2 was decreased one day after psychomotor sensitization and returned to baseline at seven days in the nucleus accumbens (NAc) of WT mice, but not in eEF2K-KI mice. However, one day following cocaine challenge, phosphorylated eEF2 decreased in WT but not KI mice. Importantly, specific targeting of eEF2K expression by shRNA in the NAc decreased cocaine condition place preference. These results suggest that the eEF2 pathway play a role in cocaine-induced locomotor sensitization and conditioned place preference., (© 2022. The Author(s).)
- Published
- 2022
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29. Ratio of Pathological Response to Preoperative Chemotherapy in Patients Undergoing Complete Cytoreduction and Hyperthermic Intraperitoneal Chemotherapy for Metastatic Colorectal Cancer Correlates with Survival.
- Author
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Mor E, Assaf D, Laks S, Benvenisti H, Schtrechman G, Hazzan D, Segev L, Yaka R, Shacham-Shmueli E, Margalit O, Halpern N, Perelson D, Kaufmann MI, Ben-Yaacov A, Nissan A, and Adileh M
- Subjects
- Antineoplastic Combined Chemotherapy Protocols therapeutic use, Combined Modality Therapy, Cytoreduction Surgical Procedures, Humans, Hyperthermic Intraperitoneal Chemotherapy, Prognosis, Retrospective Studies, Survival Rate, Colorectal Neoplasms drug therapy, Hyperthermia, Induced
- Abstract
Background: Pathological response of colorectal peritoneal metastasis (CRPM) may affect prognosis. We investigated the relationship between oncological outcomes and pathological response to chemotherapy of CRPM following cytoreductive surgery (CRS) and hyperthermic intraperitoneal chemotherapy (HIPEC)., Methods: We conducted a retrospective analysis of a prospectively maintained Peritoneal Surface Malignancies database between 2015 and 2020. Analysis included patients with CRPM who underwent a CRS/HIPEC procedure (n = 178). The cohort was divided into three groups according to the response ratio (ratio of tumor-positive specimens to the total number of specimens resected): Group A, complete response; Group B, high response ratio, and Group C, low response ratio., Results: The group demographics were similar, but the overall complication rate was higher in Group C (65.2%) compared with Groups A (55%) and B (42.8%) [p = 0.03]. Survival correlated to response ratio; the estimated median disease-free survival of Group C was 9.1 months (5.97-12.23), 14.9 months (4.72-25.08) for Group B, and was not reached in Group A (p = 0.001). The estimated median overall survival in Group C was 35 months (26.69-43.31), and was not reached in Groups A and B (p = 0.001)., Conclusions: The pathological response ratio to systemic therapy correlates with survival in patients undergoing CRS/HIPEC. This study supports the utilization of preoperative therapy for better patient selection, with a potential impact on survival., (© 2021. Society of Surgical Oncology.)
- Published
- 2021
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30. Archaeogenetic analysis of Neolithic sheep from Anatolia suggests a complex demographic history since domestication.
- Author
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Yurtman E, Özer O, Yüncü E, Dağtaş ND, Koptekin D, Çakan YG, Özkan M, Akbaba A, Kaptan D, Atağ G, Vural KB, Gündem CY, Martin L, Kılınç GM, Ghalichi A, Açan SC, Yaka R, Sağlıcan E, Lagerholm VK, Krzewińska M, Günther T, Morell Miranda P, Pişkin E, Şevketoğlu M, Bilgin CC, Atakuman Ç, Erdal YS, Sürer E, Altınışık NE, Lenstra JA, Yorulmaz S, Abazari MF, Hoseinzadeh J, Baird D, Bıçakçı E, Çevik Ö, Gerritsen F, Özbal R, Götherström A, Somel M, Togan İ, and Özer F
- Subjects
- Animals, Archaeology, Cell Nucleus, Demography, Turkey, DNA, Ancient analysis, DNA, Mitochondrial analysis, Domestication, Polymorphism, Genetic, Sheep, Domestic genetics
- Abstract
Sheep were among the first domesticated animals, but their demographic history is little understood. Here we analyzed nuclear polymorphism and mitochondrial data (mtDNA) from ancient central and west Anatolian sheep dating from Epipaleolithic to late Neolithic, comparatively with modern-day breeds and central Asian Neolithic/Bronze Age sheep (OBI). Analyzing ancient nuclear data, we found that Anatolian Neolithic sheep (ANS) are genetically closest to present-day European breeds relative to Asian breeds, a conclusion supported by mtDNA haplogroup frequencies. In contrast, OBI showed higher genetic affinity to present-day Asian breeds. These results suggest that the east-west genetic structure observed in present-day breeds had already emerged by 6000 BCE, hinting at multiple sheep domestication episodes or early wild introgression in southwest Asia. Furthermore, we found that ANS are genetically distinct from all modern breeds. Our results suggest that European and Anatolian domestic sheep gene pools have been strongly remolded since the Neolithic., (© 2021. The Author(s).)
- Published
- 2021
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31. Potentiated Response of ERK/MAPK Signaling is Associated with Prolonged Withdrawal from Cocaine Behavioral Sensitization.
- Author
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Bingor A, Azriel M, Amiad L, and Yaka R
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- Animals, Behavior, Animal, Excitatory Amino Acid Antagonists pharmacology, Male, Mitogen-Activated Protein Kinase 3 antagonists & inhibitors, Mitogen-Activated Protein Kinase 3 metabolism, Nucleus Accumbens drug effects, Nucleus Accumbens metabolism, Piperidines pharmacology, Protein Kinase Inhibitors pharmacology, Rats, Receptors, N-Methyl-D-Aspartate antagonists & inhibitors, Receptors, N-Methyl-D-Aspartate genetics, Receptors, N-Methyl-D-Aspartate metabolism, Substance Withdrawal Syndrome physiopathology, Cocaine adverse effects, MAP Kinase Signaling System, Substance Withdrawal Syndrome metabolism
- Abstract
Among the neuroadaptations underlying the expression of cocaine-induced behaviors are modifications in glutamate-mediated signaling and synaptic plasticity via activation of mitogen-activated protein kinases (MAPKs) within the nucleus accumbens (NAc). We hypothesized that exposure to cocaine leads to alterations in MAPK signaling in NAc neurons, which facilitates changes in the glutamatergic system and thus behavioral changes. We have previously shown that following withdrawal from cocaine-induced behavioral sensitization (BS), an increase in glutamate receptor expression and elevated MAPK signaling was evident. Here, we set out to determine the time course and behavioral consequences of inhibition of extracellular signal-regulated kinase (ERK) or NMDA receptors following withdrawal from BS. We found that inhibiting ERK by microinjection of U0126 into the NAc at 1 or 6 days following withdrawal from BS did not affect the expression of BS when challenged with cocaine at 14 days. However, inhibition of ERK 1 day before the cocaine challenge abolished the expression of BS. We also inhibited NR2B-containing NMDA receptors in the NAc by microinjection of ifenprodil into the NAc following withdrawal from BS, which had no effect on the expression of BS. However, microinjection of ifenprodil to the NAc 1 day before challenge attenuated the expression of BS similar to ERK inhibition. These results suggest that following a prolonged period of withdrawal, NR2B-containing NMDA receptors and ERK activity play a critical role in the expression of cocaine behavioral sensitization., (© 2021. The Author(s).)
- Published
- 2021
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32. The incidence of postoperative re-stratification for recurrence in well-differentiated thyroid cancer-a retrospective cohort study.
- Author
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Carmel Neiderman NN, Duek I, Ravia A, Yaka R, Warshavsky A, Ringel B, Muhanna N, Horowitz G, Ziv Baran T, and Fliss DM
- Abstract
Background: After diagnosing well-differentiated thyroid cancer (WDTC), assessment of the risk for disease-specific recurrence is essential for deciding between hemi-thyroidectomy (HT) and total thyroidectomy (TT). The American Thyroid Association (ATA) 2015 guidelines suggest that patients with 1-4 cm WDTC without suspicious features may be suitable for HT. Patients' preoperatively determined risk levels are re-stratified according to surgical and final histopathological findings. The incidence and clinical implications of high-risk features discovered postoperatively in patients with preoperatively determined low-risk WDTC are yet to be better defined., Methods: Thyroidectomies performed in the Tel-Aviv Sourasky Medical Center (TASMC) [2006-2018] were included. Patients with 1-4 cm WDTC without evidence of positive cervical lymph nodes, invasion to adjacent structures, or high-risk cytology were considered at low risk for disease-specific recurrence-suitable for lobectomy. Patients were stratified according to their risk for disease-specific recurrence, pre- and postoperatively, and the rate of completion thyroidectomy was determined., Results: In total, 301 (21%) patients were preoperatively stratified as low risk. Forty-six of them (15%) were re-stratified postoperatively as intermediate-to-high-risk. There were no significant differences in the characteristics of the patients who maintained their original stratification to patients who were upscaled to a higher risk level postoperatively., Conclusions: We report a 15% rate of postoperative risk escalation of patients who required completion thyroidectomy according to current ATA guidelines. In our opinion, this rate of postoperative WDTC upscaling of risk requiring more radical surgery than originally planned, is acceptable. Meticulous preoperative personalized evaluation by an experienced multidisciplinary dedicated team is essential., Competing Interests: Conflicts of Interest: All authors have completed the ICMJE uniform disclosure form (available at https://dx.doi.org/10.21037/gs-21-105). The authors have no conflicts of interest to declare., (2021 Gland Surgery. All rights reserved.)
- Published
- 2021
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33. GABAergic projections to the ventral tegmental area govern cocaine-conditioned reward.
- Author
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Weitz M, Khayat A, and Yaka R
- Subjects
- Animals, Conditioning, Psychological drug effects, Dopamine metabolism, Dopaminergic Neurons, Nucleus Accumbens metabolism, Optogenetics, Rats, Reward, gamma-Aminobutyric Acid metabolism, Cocaine pharmacology, GABAergic Neurons metabolism, Ventral Tegmental Area metabolism
- Abstract
Elevated dopamine (DA) levels in the reward system underlie various drug-related behaviors, including addiction. As a major DA source in the reward system, the ventral tegmental area (VTA) is highly regulated by GABAergic inputs projected from different brain regions. It was previously shown that cocaine exposure reduces GABA
A -mediated inhibitory postsynaptic currents (IPSCs) in VTA DA neurons; however, the specific GABAergic input underlying this inhibitory effect remains unknown. Here, using optogenetics, we separately activate and characterize different GABAergic afferents innervating the VTA, focusing on the rostromedial tegmental nucleus (RMTg) and the nucleus accumbens (NAc). GABAA -mediated IPSCs were recorded from VTA DA neurons, and the effect of DA-induced inhibition was measured in an afferent-specific manner. In addition, to examine the effect of enhanced GABAergic tone on the rewarding properties of cocaine, we exogenously activated the different GABAergic inputs during the acquisition phase of cocaine conditioned place preference (CPP). We found that acute cocaine exposure strongly attenuates GABAA -mediated IPSCs in VTA DA neurons from both inhibitory sources. Furthermore, exogenous light activation of both RMTg and NAc afferents in the VTA during the acquisition of cocaine-CPP significantly reduced the rewarding properties of cocaine. This behavioral observation was correlated with the reduction in the neuronal activity of VTA DA neurons as measured by the expression of c-fos. Together, these results emphasize the critical role of these GABAergic inputs to the VTA in modulating and potentially interrupting cocaine reward., (© 2021 Society for the Study of Addiction.)- Published
- 2021
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34. Variable kinship patterns in Neolithic Anatolia revealed by ancient genomes.
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Yaka R, Mapelli I, Kaptan D, Doğu A, Chyleński M, Erdal ÖD, Koptekin D, Vural KB, Bayliss A, Mazzucato C, Fer E, Çokoğlu SS, Lagerholm VK, Krzewińska M, Karamurat C, Gemici HC, Sevkar A, Dağtaş ND, Kılınç GM, Adams D, Munters AR, Sağlıcan E, Milella M, Schotsmans EMJ, Yurtman E, Çetin M, Yorulmaz S, Altınışık NE, Ghalichi A, Juras A, Bilgin CC, Günther T, Storå J, Jakobsson M, de Kleijn M, Mustafaoğlu G, Fairbairn A, Pearson J, Togan İ, Kayacan N, Marciniak A, Larsen CS, Hodder I, Atakuman Ç, Pilloud M, Sürer E, Gerritsen F, Özbal R, Baird D, Erdal YS, Duru G, Özbaşaran M, Haddow SD, Knüsel CJ, Götherström A, Özer F, and Somel M
- Subjects
- History, Ancient, Humans, Pedigree, Turkey, Archaeology, Social Structure
- Abstract
The social organization of the first fully sedentary societies that emerged during the Neolithic period in Southwest Asia remains enigmatic,
1 mainly because material culture studies provide limited insight into this issue. However, because Neolithic Anatolian communities often buried their dead beneath domestic buildings,2 household composition and social structure can be studied through these human remains. Here, we describe genetic relatedness among co-burials associated with domestic buildings in Neolithic Anatolia using 59 ancient genomes, including 22 new genomes from Aşıklı Höyük and Çatalhöyük. We infer pedigree relationships by simultaneously analyzing multiple types of information, including autosomal and X chromosome kinship coefficients, maternal markers, and radiocarbon dating. In two early Neolithic villages dating to the 9th and 8th millennia BCE, Aşıklı Höyük and Boncuklu, we discover that siblings and parent-offspring pairings were frequent within domestic structures, which provides the first direct indication of close genetic relationships among co-burials. In contrast, in the 7th millennium BCE sites of Çatalhöyük and Barcın, where we study subadults interred within and around houses, we find close genetic relatives to be rare. Hence, genetic relatedness may not have played a major role in the choice of burial location at these latter two sites, at least for subadults. This supports the hypothesis that in Çatalhöyük,3-5 and possibly in some other Neolithic communities, domestic structures may have served as burial location for social units incorporating biologically unrelated individuals. Our results underscore the diversity of kin structures in Neolithic communities during this important phase of sociocultural development., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2021 The Authors. Published by Elsevier Inc. All rights reserved.)- Published
- 2021
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35. α-Synuclein-induced Kv4 channelopathy in mouse vagal motoneurons drives nonmotor parkinsonian symptoms.
- Author
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Chiu WH, Kovacheva L, Musgrove RE, Arien-Zakay H, Koprich JB, Brotchie JM, Yaka R, Ben-Zvi D, Hanani M, Roeper J, and Goldberg JA
- Subjects
- Animals, Humans, Mice, Motor Neurons, alpha-Synuclein genetics, Channelopathies, Neurodegenerative Diseases, Parkinson Disease etiology
- Abstract
No disease-modifying therapy is currently available for Parkinson's disease (PD), the second most common neurodegenerative disease. The long nonmotor prodromal phase of PD is a window of opportunity for early detection and intervention. However, we lack the pathophysiological understanding to develop selective biomarkers and interventions. By using a mutant α-synuclein selective-overexpression mouse model of prodromal PD, we identified a cell-autonomous selective Kv4 channelopathy in dorsal motor nucleus of the vagus (DMV) neurons. This functional remodeling of intact DMV neurons leads to impaired pacemaker function in vitro and in vivo, which, in turn, reduces gastrointestinal motility, a common early symptom of prodromal PD. We identify a chain of events from α-synuclein via a biophysical dysfunction of a specific neuronal population to a clinically relevant prodromal symptom. These findings will facilitate the rational design of clinical biomarkers to identify people at risk for developing PD., (Copyright © 2021 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution NonCommercial License 4.0 (CC BY-NC).)
- Published
- 2021
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36. The role of mitochondria in cocaine addiction.
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Thornton C, Grad E, and Yaka R
- Subjects
- Animals, Antioxidants pharmacology, Antioxidants therapeutic use, Brain drug effects, Brain embryology, Brain metabolism, Cocaine pharmacology, Cocaine toxicity, Energy Metabolism drug effects, Female, Glycolysis drug effects, Humans, Mice, Mitochondrial Transmembrane Permeability-Driven Necrosis drug effects, Mitochondrial Turnover drug effects, Neuroglia drug effects, Neuroglia metabolism, Organelle Biogenesis, Oxidative Phosphorylation drug effects, Oxidative Stress, Pregnancy, Pregnancy Complications chemically induced, Prenatal Exposure Delayed Effects, Rats, Reactive Oxygen Species, Reward, Substance Withdrawal Syndrome metabolism, Cocaine-Related Disorders metabolism, Mitochondria physiology
- Abstract
The incidence of cocaine abuse is increasing especially in the U.K. where the rates are among the highest in Europe. In addition to its role as a psychostimulant, cocaine has profound effect on brain metabolism, impacting glycolysis and impairing oxidative phosphorylation. Cocaine exposure alters metabolic gene expression and protein networks in brain regions including the prefrontal cortex, the ventral tegmental area and the nucleus accumbens, the principal nuclei of the brain reward system. Here, we focus on how cocaine impacts mitochondrial function, in particular through alterations in electron transport chain function, reactive oxygen species (ROS) production and oxidative stress (OS), mitochondrial dynamics and mitophagy. Finally, we describe the impact of cocaine on brain energy metabolism in the developing brain following prenatal exposure. The plethora of mitochondrial functions altered following cocaine exposure suggest that therapies maintaining mitochondrial functional integrity may hold promise in mitigating cocaine pathology and addiction., (© 2021 The Author(s). Published by Portland Press Limited on behalf of the Biochemical Society.)
- Published
- 2021
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37. Zeta Inhibitory Peptide attenuates learning and memory by inducing NO-mediated downregulation of AMPA receptors.
- Author
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Bingor A, Haham T, Thornton C, Stern-Bach Y, and Yaka R
- Subjects
- Animals, Cocaine administration & dosage, Down-Regulation, Endocytosis drug effects, Excitatory Postsynaptic Potentials drug effects, Excitatory Postsynaptic Potentials physiology, HEK293 Cells, Humans, Long-Term Potentiation drug effects, Male, Mice, Models, Animal, NG-Nitroarginine Methyl Ester pharmacology, Neurons drug effects, Neurons physiology, Nitric Oxide antagonists & inhibitors, Nucleus Accumbens drug effects, Nucleus Accumbens physiology, Phosphorylation, Primary Cell Culture, Protein Kinase C antagonists & inhibitors, Protein Kinase C metabolism, Rats, Receptors, AMPA genetics, Reward, Stereotaxic Techniques, Cell-Penetrating Peptides pharmacology, Conditioning, Psychological drug effects, Lipopeptides pharmacology, Memory, Long-Term drug effects, Nitric Oxide metabolism, Receptors, AMPA metabolism
- Abstract
Zeta inhibitory peptide (ZIP), a PKMζ inhibitor, is widely used to interfere with the maintenance of acquired memories. ZIP is able to erase memory even in the absence of PKMζ, via an unknown mechanism. We found that ZIP induces redistribution of the AMPARGluA1 in HEK293 cells and primary cortical neurons, and decreases AMPAR-mediated currents in the nucleus accumbens (NAc). These effects were mimicked by free arginine or by a modified ZIP in which all but the arginine residues were replaced by alanine. Redistribution was blocked by a peptidase-resistant version of ZIP and by treatment with the nitric oxide (NO)-synthase inhibitor L-NAME. ZIP increased GluA1-S831 phosphorylation and ZIP-induced redistribution was blocked by nitrosyl-mutant GluA1-C875S or serine-mutant GluA1-S831A. Introducing the cleavable arginine-alanine peptide into the NAc attenuated expression of cocaine-conditioned reward. Together, these results suggest that ZIP may act as an arginine donor, facilitating NO-dependent downregulation of AMPARs, thereby attenuating learning and memory.
- Published
- 2020
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38. Using Toxins in Brain Slice Recordings.
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Bingor A and Yaka R
- Subjects
- Animals, Electrophysiology methods, In Vitro Techniques, Ion Channels metabolism, Mice, Patch-Clamp Techniques, Picrotoxin pharmacology, Rats, Tetrodotoxin pharmacology, Brain drug effects, Brain metabolism
- Abstract
Use of biological toxins from different kinds is widely accepted in electrophysiological experiments. In particular, electrophysiological recordings from brain tissue slices are usually conducted with toxins to manipulate on different receptors or ion channels. Here we describe usage of toxins in electrophysiological experiments in acute brain slices.
- Published
- 2020
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39. Ancient Mitochondrial Genomes Reveal the Absence of Maternal Kinship in the Burials of Çatalhöyük People and Their Genetic Affinities.
- Author
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Chyleński M, Ehler E, Somel M, Yaka R, Krzewińska M, Dabert M, Juras A, and Marciniak A
- Subjects
- Evolution, Molecular, Humans, Turkey, DNA, Ancient, Genome, Mitochondrial, Maternal Inheritance, Pedigree
- Abstract
Çatalhöyük is one of the most widely recognized and extensively researched Neolithic settlements. The site has been used to discuss a wide range of aspects associated with the spread of the Neolithic lifestyle and the social organization of Neolithic societies. Here, we address both topics using newly generated mitochondrial genomes, obtained by direct sequencing and capture-based enrichment of genomic libraries, for a group of individuals buried under a cluster of neighboring houses from the classical layer of the site's occupation. Our data suggests a lack of maternal kinship between individuals interred under the floors of Çatalhöyük buildings. The findings could potentially be explained either by a high variability of maternal lineages within a larger kin group, or alternatively, an intentional selection of individuals for burial based on factors other than biological kinship. Our population analyses shows that Neolithic Central Anatolian groups, including Çatalhöyük, share the closest affinity with the population from the Marmara Region and are, in contrast, set further apart from the Levantine populations. Our findings support the hypothesis about the emergence and the direction of spread of the Neolithic within Anatolian Peninsula and beyond, emphasizing a significant role of Central Anatolia in this process.
- Published
- 2019
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40. Genomic and Strontium Isotope Variation Reveal Immigration Patterns in a Viking Age Town.
- Author
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Krzewińska M, Kjellström A, Günther T, Hedenstierna-Jonson C, Zachrisson T, Omrak A, Yaka R, Kılınç GM, Somel M, Sobrado V, Evans J, Knipper C, Jakobsson M, Storå J, and Götherström A
- Subjects
- Bone and Bones chemistry, Cities, Female, Genomics, History, Ancient, Humans, Male, Strontium Isotopes, Sweden, DNA genetics, Emigration and Immigration history, Genome-Wide Association Study, Strontium chemistry
- Abstract
The impact of human mobility on the northern European urban populations during the Viking and Early Middle Ages and its repercussions in Scandinavia itself are still largely unexplored. Our study of the demographics in the final phase of the Viking era is the first comprehensive multidisciplinary investigation that includes genetics, isotopes, archaeology, and osteology on a larger scale. This early Christian dataset is particularly important as the earlier common pagan burial tradition during the Iron Age was cremation, hindering large-scale DNA analyses. We present genome-wide sequence data from 23 individuals from the 10
th to 12th century Swedish town of Sigtuna. The data revealed high genetic diversity among the early urban residents. The observed variation exceeds the genetic diversity in distinct modern-day and Iron Age groups of central and northern Europe. Strontium isotope data suggest mixed local and non-local origin of the townspeople. Our results uncover the social system underlying the urbanization process of the Viking World of which mobility was an intricate part and was comparable between males and females. The inhabitants of Sigtuna were heterogeneous in their genetic affinities, probably reflecting both close and distant connections through an established network, confirming that early urbanization processes in northern Europe were driven by migration., (Copyright © 2018 The Authors. Published by Elsevier Ltd.. All rights reserved.)- Published
- 2018
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41. Investigating Holocene human population history in North Asia using ancient mitogenomes.
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Kılınç GM, Kashuba N, Yaka R, Sümer AP, Yüncü E, Shergin D, Ivanov GL, Kichigin D, Pestereva K, Volkov D, Mandryka P, Kharinskii A, Tishkin A, Ineshin E, Kovychev E, Stepanov A, Alekseev A, Fedoseeva SA, Somel M, Jakobsson M, Krzewińska M, Storå J, and Götherström A
- Subjects
- Asia, Northern, Female, History, Ancient, Humans, Male, DNA, Ancient, DNA, Mitochondrial genetics, Genetic Variation, Genome, Microbial
- Abstract
Archaeogenomic studies have largely elucidated human population history in West Eurasia during the Stone Age. However, despite being a broad geographical region of significant cultural and linguistic diversity, little is known about the population history in North Asia. We present complete mitochondrial genome sequences together with stable isotope data for 41 serially sampled ancient individuals from North Asia, dated between c.13,790 BP and c.1,380 BP extending from the Palaeolithic to the Iron Age. Analyses of mitochondrial DNA sequences and haplogroup data of these individuals revealed the highest genetic affinity to present-day North Asian populations of the same geographical region suggesting a possible long-term maternal genetic continuity in the region. We observed a decrease in genetic diversity over time and a reduction of maternal effective population size (N
e ) approximately seven thousand years before present. Coalescent simulations were consistent with genetic continuity between present day individuals and individuals dating to 7,000 BP, 4,800 BP or 3,000 BP. Meanwhile, genetic differences observed between 7,000 BP and 3,000 BP as well as between 4,800 BP and 3,000 BP were inconsistent with genetic drift alone, suggesting gene flow into the region from distant gene pools or structure within the population. These results indicate that despite some level of continuity between ancient groups and present-day populations, the region exhibits a complex demographic history during the Holocene.- Published
- 2018
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42. Archaeogenetics of Late Iron Age Çemialo Sırtı, Batman: Investigating maternal genetic continuity in north Mesopotamia since the Neolithic.
- Author
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Yaka R, Birand A, Yılmaz Y, Caner C, Açan SC, Gündüzalp S, Parvizi P, Erim Özdoğan A, Togan İ, and Somel M
- Subjects
- Adult, Archaeology, Female, Genetics, Population, History, Ancient, Humans, Male, Mesopotamia ethnology, White People genetics, Asian People genetics, DNA, Ancient analysis, DNA, Mitochondrial genetics
- Abstract
Objectives: North Mesopotamia has witnessed dramatic social change during the Holocene, but the impact of these events on its demographic history is poorly understood. Here, we study this question by analysing genetic data from the recently excavated Late Iron Age settlement of Çemialo Sırtı in Batman, southeast Turkey. Archaeological and radiocarbon evidence indicate that the site was inhabited during the second and first millennia BCE. Çemialo Sırtı reveals nomadic items of the Early Iron Age, as well as items associated with the Late Achaemenid and subsequent Hellenistic Periods. We compare Çemialo Sırtı mitochondrial DNA profiles with earlier and later populations from west Eurasia to describe genetic continuity patterns in the region., Materials and Methods: A total of 16 Çemialo Sırtı individuals' remains were studied. PCR and Sanger sequencing were used to obtain mitochondrial DNA HVRI-HVRII sequences. We studied haplotype diversity and pairwise genetic distances using F
ST , comparing the Çemialo Sırtı population with ancient and modern-day populations from west Eurasia. Coalescent simulations were carried out to test continuity for specific population comparisons., Results: Mitochondrial DNA (mtDNA) haplotypes from 12 Çemialo Sırtı individuals reveal high haplotype diversity in this population, conspicuously higher than early Holocene west Eurasian populations, which supports the notion of increasing population admixture in west Eurasia through the Holocene. In its mtDNA composition, Çemialo Sırtı shows highest affinity to Neolithic north Syria and Neolithic Anatolia among ancient populations studied, and to modern-day southwest Asian populations. Based on population genetic simulations we cannot reject continuity between Neolithic and Iron Age, or between Iron Age and present-day populations of the region., Discussion: Despite the region's complex sociopolitical history and indication for increased genetic diversity over time, we find no evidence for sharp shifts in north Mesopotamian maternal genetic composition within the last 10,000 years., (© 2018 Wiley Periodicals, Inc.)- Published
- 2018
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43. Archaeogenomic analysis of the first steps of Neolithization in Anatolia and the Aegean.
- Author
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Kılınç GM, Koptekin D, Atakuman Ç, Sümer AP, Dönertaş HM, Yaka R, Bilgin CC, Büyükkarakaya AM, Baird D, Altınışık E, Flegontov P, Götherström A, Togan İ, and Somel M
- Subjects
- Archaeology, Farmers history, Genomics, Greece, History, Ancient, Humans, Turkey, Agriculture history, Gene Flow, Genome, Human, Human Migration history
- Abstract
The Neolithic transition in west Eurasia occurred in two main steps: the gradual development of sedentism and plant cultivation in the Near East and the subsequent spread of Neolithic cultures into the Aegean and across Europe after 7000 cal BCE. Here, we use published ancient genomes to investigate gene flow events in west Eurasia during the Neolithic transition. We confirm that the Early Neolithic central Anatolians in the ninth millennium BCE were probably descendants of local hunter-gatherers, rather than immigrants from the Levant or Iran. We further study the emergence of post-7000 cal BCE north Aegean Neolithic communities. Although Aegean farmers have frequently been assumed to be colonists originating from either central Anatolia or from the Levant, our findings raise alternative possibilities: north Aegean Neolithic populations may have been the product of multiple westward migrations, including south Anatolian emigrants, or they may have been descendants of local Aegean Mesolithic groups who adopted farming. These scenarios are consistent with the diversity of material cultures among Aegean Neolithic communities and the inheritance of local forager know-how. The demographic and cultural dynamics behind the earliest spread of Neolithic culture in the Aegean could therefore be distinct from the subsequent Neolithization of mainland Europe., (© 2017 The Author(s).)
- Published
- 2017
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44. Chronic treatment with Tempol during acquisition or withdrawal from CPP abolishes the expression of cocaine reward and diminishes oxidative damage.
- Author
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Beiser T, Numa R, Kohen R, and Yaka R
- Subjects
- Animals, Cocaine adverse effects, Cocaine-Related Disorders therapy, Disease Models, Animal, Lipid Peroxidation, Male, Nitric Oxide metabolism, Nitrites metabolism, Prefrontal Cortex metabolism, Prefrontal Cortex physiopathology, Rats, Reinforcement, Psychology, Spin Labels, Treatment Outcome, Cocaine metabolism, Cocaine-Related Disorders metabolism, Cocaine-Related Disorders psychology, Conditioning, Psychological, Cyclic N-Oxides pharmacology, Oxidative Stress drug effects, Reward
- Abstract
In previous studies, we reported that pretreatment with the antioxidant Tempol attenuated the development and expression of cocaine-induced psychomotor sensitization in rats and diminished cocaine-induced oxidative stress (OS) in the prefrontal cortex (PFC) and nucleus accumbens (NAc), suggesting a potential role for Tempol in interfering with cocaine-related psychomotor sensitization. The aim of the current study was to examine the role of Tempol in reward and reinforcement using the conditioned place preference (CPP) paradigm. We found that administration of Tempol during the conditioning session abolished the expression of cocaine-induced CPP. We also found that OS was significantly elevated following the establishment of CPP, and that cocaine-induced OS was significantly diminished by pretreatment with Tempol during conditioning. Furthermore, we found that repeated, but not single, administration of Tempol for seven days during withdrawal from CPP resulted in significant attenuation in the expression of CPP. Moreover, Tempol did not affect the expression of food reward. Taken together, these findings provide evidence for the involvement of Tempol in regulating cocaine rewarding properties without affecting natural rewards. Since Tempol was found to be effective in reducing OS and expression of CPP following withdrawal, it may be a potential treatment for cocaine addiction.
- Published
- 2017
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45. The Demographic Development of the First Farmers in Anatolia.
- Author
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Kılınç GM, Omrak A, Özer F, Günther T, Büyükkarakaya AM, Bıçakçı E, Baird D, Dönertaş HM, Ghalichi A, Yaka R, Koptekin D, Açan SC, Parvizi P, Krzewińska M, Daskalaki EA, Yüncü E, Dağtaş ND, Fairbairn A, Pearson J, Mustafaoğlu G, Erdal YS, Çakan YG, Togan İ, Somel M, Storå J, Jakobsson M, and Götherström A
- Subjects
- Humans, Turkey, Agriculture, Archaeology, Farmers, Genetic Variation
- Abstract
The archaeological documentation of the development of sedentary farming societies in Anatolia is not yet mirrored by a genetic understanding of the human populations involved, in contrast to the spread of farming in Europe [1-3]. Sedentary farming communities emerged in parts of the Fertile Crescent during the tenth millennium and early ninth millennium calibrated (cal) BC and had appeared in central Anatolia by 8300 cal BC [4]. Farming spread into west Anatolia by the early seventh millennium cal BC and quasi-synchronously into Europe, although the timing and process of this movement remain unclear. Using genome sequence data that we generated from nine central Anatolian Neolithic individuals, we studied the transition period from early Aceramic (Pre-Pottery) to the later Pottery Neolithic, when farming expanded west of the Fertile Crescent. We find that genetic diversity in the earliest farmers was conspicuously low, on a par with European foraging groups. With the advent of the Pottery Neolithic, genetic variation within societies reached levels later found in early European farmers. Our results confirm that the earliest Neolithic central Anatolians belonged to the same gene pool as the first Neolithic migrants spreading into Europe. Further, genetic affinities between later Anatolian farmers and fourth to third millennium BC Chalcolithic south Europeans suggest an additional wave of Anatolian migrants, after the initial Neolithic spread but before the Yamnaya-related migrations. We propose that the earliest farming societies demographically resembled foragers and that only after regional gene flow and rising heterogeneity did the farming population expansions into Europe occur., (Copyright © 2016 The Author(s). Published by Elsevier Ltd.. All rights reserved.)
- Published
- 2016
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46. Neuroinflammation-Induced Memory Deficits Are Amenable to Treatment with D-Cycloserine.
- Author
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Liraz-Zaltsman S, Yaka R, Shabashov D, Shohami E, and Biegon A
- Subjects
- Animals, Brain drug effects, Brain metabolism, Brain pathology, Cycloserine pharmacology, Gliosis, Lipopolysaccharides toxicity, Long-Term Potentiation, Male, Memory Disorders etiology, Mice, Receptors, N-Methyl-D-Aspartate agonists, Cycloserine therapeutic use, Memory Disorders drug therapy, Receptors, N-Methyl-D-Aspartate metabolism
- Abstract
Cognitive deficits, especially memory loss, are common following many types of brain insults which are associated with neuroinflammation, although the underlying mechanisms are not entirely clear. The present study aimed to characterize the long-term cognitive and behavioral impairments in a mouse model of neuroinflammation in the absence of other insults and to evaluate the therapeutic potential of D-cycloserine (DCS). DCS is a co-agonist of the NMDA receptor that ameliorates cognitive deficits in models of TBI and stroke. Using a mouse model of global neuroinflammation induced by intracisternal (i.c.) administration of endotoxin (LPS), we found long-lasting microgliosis, memory deficits, impaired LTP, and reduced levels of the obligatory NR1 subunit of the NMDA receptor. A single administration of DCS, 1 day after i.c. LPS reduced microgliosis, reversed the cognitive deficits and restored LTP and NR1 levels. These results demonstrate that neuroinflammation alone, in the absence of trauma or ischemia, can cause persistent (>6 months) memory deficits linked to deranged NNMDA receptor function and suggest a possible role for NMDA co-agonists in reducing the cognitive sequelae of neuroinflammation.
- Published
- 2016
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47. Influence of abstinence and intervals between extinction trials on the expression of cocaine-conditioned place preference in adolescent rats.
- Author
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Poltyrev T and Yaka R
- Subjects
- Animals, Association Learning physiology, Dose-Response Relationship, Drug, Male, Rats, Secondary Prevention, Time Factors, Cocaine administration & dosage, Conditioning, Psychological drug effects, Cues, Drug-Seeking Behavior drug effects, Extinction, Psychological
- Abstract
Rationale: Disruption of acquired drug-cue associations can effectively decrease relapse. The benefits of extinction training as opposed to abstinence have been reported. Timing of extinction trials is an important variable. Finding an effective extinction regimen can optimize addiction therapies., Objective: To determine the effects of different drug-free periods on cocaine-conditioned place preference (CPP) in rats that either did or did not receive non-reinforced exposure to drug-associated stimuli., Materials and Methods: Male adolescent rats were trained for cocaine-CPP (5, 10, or 15 mg/kg, i.p.) in a biased manner for 8 days and then tested following different intervals., Results: Rats treated with 15 mg/kg cocaine displayed high and equal CPP on the first test, performed 1, 4, 7, or 14 days following conditioning. Expression of CPP during the test performed 1 day after conditioning was equal in the groups conditioned with 5, 10, or 15 mg/kg cocaine. When the interval before the first test was extended to 14 days, the group treated with 5 mg/kg did not show CPP. Rats treated with the three doses and tested repeatedly at 1, 7, and 14 days did not display CPP on the third test. CPP after treatment with 10 or 15 mg/kg cocaine was already extinguished in the second test but only for an interval of 1-14 days., Conclusions: Maintenance of CPP was evident at least 2 weeks after forced abstinence. Extinguished CPP can be obtained after a single extinction trial, performed close to original training and followed by prolonged abstinence. However, with low doses of cocaine, abstinence alone may be sufficient to disrupt drug-cue associations.
- Published
- 2013
- Full Text
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48. Neuroprotective effects of nimodipine and nifedipine in the NGF-differentiated PC12 cells exposed to oxygen-glucose deprivation or trophic withdrawal.
- Author
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Lecht S, Rotfeld E, Arien-Zakay H, Tabakman R, Matzner H, Yaka R, Lelkes PI, and Lazarovici P
- Subjects
- Analysis of Variance, Animals, Calcium metabolism, Caspase 3 metabolism, Catecholamines metabolism, Cell Hypoxia drug effects, Hippocampus drug effects, In Vitro Techniques, L-Lactate Dehydrogenase metabolism, Nerve Growth Factor metabolism, PC12 Cells drug effects, Rats, Cell Differentiation drug effects, Glucose deficiency, Nerve Growth Factor pharmacology, Neuroprotective Agents pharmacology, Nifedipine pharmacology, Nimodipine pharmacology
- Abstract
The goal of this study was to compare the neuroprotective properties of the L-type Ca²⁺ channel blockers, nimodipine and nifedipine, using nerve growth factor (NGF)-differentiated PC12 neuronal cultures exposed to oxygen-glucose deprivation (OGD) and trophic withdrawal-induced cell death. Nimodipine (1-100 μM) conferred 65±13% neuroprotection upon exposure to OGD and 35±6% neuroprotection towards different trophic withdrawal-induced cell death measured by lactate dehydrogenase and caspase 3 activities. The time window of nimodipine conferred neuroprotection was detected during the first 5h but not at longer OGD exposures. Nifedipine (1-100 μM), to a lower potency than nimodipine, conferred 30-55±8% neuroprotection towards OGD in PC12 cells and 29±5% in rat hypocampal slices, and 10±3% neuroprotection at 100 μM towards trophic withdrawal-induced PC12 cell death. The ability to demonstrate that nimodipine conferred neuroprotection in a narrow therapeutic time-window indicates that the OGD PC12 model mimics the in vivo models and therefore suitable for neuroprotective drug discovery and development., (Copyright © 2012 ISDN. Published by Elsevier Ltd. All rights reserved.)
- Published
- 2012
- Full Text
- View/download PDF
49. Modifications of the input currents on VTA dopamine neurons following acute versus chronic cocaine exposure.
- Author
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Michaeli A, Matzner H, Poltyrev T, and Yaka R
- Subjects
- Animals, Dopaminergic Neurons cytology, Dopaminergic Neurons physiology, Excitatory Amino Acid Antagonists pharmacology, Excitatory Postsynaptic Potentials physiology, Rats, Receptors, AMPA metabolism, Receptors, GABA-A metabolism, Receptors, N-Methyl-D-Aspartate metabolism, Ventral Tegmental Area cytology, Ventral Tegmental Area physiology, Cocaine administration & dosage, Dopamine Uptake Inhibitors administration & dosage, Dopaminergic Neurons drug effects, Excitatory Postsynaptic Potentials drug effects, Ventral Tegmental Area drug effects
- Abstract
Excitatory synapses on dopamine (DA) neurons in the ventral tegmental area (VTA) are modulated following exposure to various addictive drugs, including cocaine. Previously we have shown that cocaine affects GABA(A) receptor (GABA(A)R)-mediated neurotransmission in VTA DA neurons. This finding led us to reexamine the modulation of the excitatory synapse on these neurons in response to cocaine exposure, while the activity of GABA(A)R is uninterrupted. Using rat brain slices, evoked post synaptic currents (ePSC) were monitored and inhibitors of NMDA receptor (NMDAR) and AMPA receptor (AMPAR) were gradually added to inhibitors-free bath solution. Modifications in the efficacy of the excitatory synapses were evaluated by comparing AMPAR-mediated and NMDAR-mediated currents (AMPA/NMDA ratio). The lack of GABA(A)R inhibitors enabled us to examine parallel changes in the relation between GABA(A)R-mediated and NMDAR-mediated currents (GABA(A)/NMDA ratio). First, we found that AMPA/NMDA ratio measured under complete availability of GABA(A)R, is significantly higher than the ratio measured under GABA(A)R blockade. In addition, GABA(A)/NMDA ratio, but not AMPA/NMDA ratio, is augmented a few hours following in vitro acute cocaine exposure. When measured 24 h after in vivo single cocaine injection, no change in GABA(A)/NMDA ratio was observed, however, the AMPA/NMDA ratio was found to be significantly higher. Finally, a decrease in both ratios was detected in rats repeatedly injected with cocaine. Taken together, these results lead to a better understanding of the means by which cocaine modifies synaptic inputs on VTA DA neurons. The parallel changes in GABA(A)/NMDA ratio may suggest an interaction between inhibitory and excitatory neural systems., (Copyright © 2011 Elsevier Ltd. All rights reserved.)
- Published
- 2012
- Full Text
- View/download PDF
50. Cue-induced reinstatement of cocaine seeking in the rat "conflict model": effect of prolonged home-cage confinement.
- Author
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Barnea-Ygael N, Yadid G, Yaka R, Ben-Shahar O, and Zangen A
- Subjects
- Animals, Conditioning, Operant drug effects, Male, Rats, Rats, Sprague-Dawley, Self Administration, Time Factors, Behavior, Addictive psychology, Cocaine administration & dosage, Conflict, Psychological, Cues, Housing, Animal, Models, Animal
- Abstract
Rationale and Objectives: Drug addiction is not just the repeated administration of drugs, but compulsive drug use maintained despite the accumulation of adverse consequences for the user. In an attempt to introduce adverse consequences of drug seeking to laboratory animals, we have developed the "conflict model," in which the access of rats to a reinforcing lever allowing self-administration requires passing of an electrified grid floor. In this model, the current intensity leading to complete abstinence from drug seeking can be measured individually. The present study was designed to evaluated whether reinstatement of drug or natural reward seeking, despite the presence of the electrical barrier, can be achieved by presentation of discrete cues that were associated with the reward, and whether prolonged home-cage confinement can facilitate such reinstatement in this model., Methods: The "conflict model" was used to test cue-induced reinstatement in the presence of the electrical barrier, after 1 or 14 days of home-cage confinement, in groups of rats that were previously trained to self-administer cocaine or sucrose., Results: Although similar shock intensity was required to suppress sucrose or cocaine self-administration, subjects exhibited significantly lower response to sucrose-associated as compared to cocaine-associated cues, during the reinstatement test. Importantly, cue-induced reinstatement of cocaine seeking was attenuated following 14 days of home-cage confinement., Conclusions: The incorporation of aversive consequence in the self-administration model enable detection of what can be interpreted as a compulsive component unique to drug reinforcers. Moreover, the effect of the aversive consequence seems to increase following home-cage confinement.
- Published
- 2012
- Full Text
- View/download PDF
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