1. Integrated miRNA and mRNA Sequencing Reveals the Sterility Mechanism in Hybrid Yellow Catfish Resulting from Pelteobagrus fulvidraco (♀) × Pelteobagrus vachelli (♂).
- Author
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Li, Shu, Yang, Qiao, Li, Maohua, Lan, Yue, and Song, Zhaobin
- Subjects
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FLATHEAD catfish , *PROGESTERONE receptors , *FISH farming , *GENE expression , *FISHERIES , *FISH conservation , *FISH development , *GENETIC sex determination - Abstract
Simple Summary: Although the prevalence of hybrid sterility in fish is a serious limitation to the quality development of the hybrid fish farming industry, it could be useful for the conservation of the genetic stock of endangered and valuable species. In this study, a total of 1709 DEGs were identified by performing RNA sequencing between hybrid and two pure yellow catfishes. A KEGG pathway analysis indicated that some genes related to reproductive functions were upregulated, including genes involved in the cell cycle and oocyte meiosis, whereas genes related to ECM–receptor interactions were downregulated. In total, 63 DEmiRNAs were obtained between the three species of yellow catfishes. The upregulated DEmiRNAs ipu-miR-194a and ipu-miR-499 were found to target the spermatogenesis-related genes CFAP70 and RSPH6A, respectively. Both acted as negative regulators, and this may underscore the miRNA–mRNA regulatory mechanism of sterility in hybrid yellow catfish (P. fulvidraco ♀ × P. vachelli ♂). The hybrid yellow catfish exhibits advantages over pure yellow catfish in terms of fast growth, fast development, a high feeding rate, and strong immunity; additionally, it is almost sterile, thus ensuring the conservation of the genetic stock of fish populations. To investigate the sterility mechanism in hybrid yellow catfish (P. fulvidraco (♀) × P. vachelli (♂)), the mRNA and miRNA of the gonads of P. fulvidraco, P. vachelli, and a hybrid yellow catfish were analyzed to characterize the differentially expressed genes; this was carried out to help establish gene expression datasets to assist in the further determination of the mechanisms of genetic sterility in hybrid yellow catfish. In total, 1709 DEGs were identified between the hybrid and two pure yellow catfishes. A KEGG pathway analysis indicated that several genes related to reproductive functions were upregulated, including those involved in the cell cycle, progesterone-mediated oocyte maturation, and oocyte meiosis, and genes associated with ECM–receptor interaction were downregulated. The spermatogenesis-related GO genes CFAP70, RSPH6A, and TSGA10 were identified as being downregulated DEGs in the hybrid yellow catfish. Sixty-three DEmiRNAs were identified between the hybrid and the two pure yellow catfish species. The upregulated DEmiRNAs ipu-miR-194a and ipu-miR-499 were found to target the spermatogenesis-related genes CFAP70 and RSPH6A, respectively, playing a negative regulatory role, which may underscore the miRNA–mRNA regulatory mechanism of sterility in hybrid yellow catfish. The differential expression of ipu-miR-196d, ipu-miR-125b, and ipu-miR-150 and their target genes spidr, cep85, and kcnn4, implicated in reproductive processes, was verified via qRT-PCR, consistent with the transcriptome sequencing expression trends. This study provides deep insights into the mechanism of hybrid sterility in vertebrate groups, thereby contributing to achieving a better understanding and management of fish conservation related to hybrid sterility. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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