10 results on '"Yang Yao, Daniele"'
Search Results
2. Population structure of Sicily within Mediterranean genetic landscapes: a paternal perspective
- Author
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SARNO, STEFANIA, BOATTINI, ALESSIO, CARTA, MARILISA, DE FANTI, SARA, SAZZINI, MARCO, YANG YAO, DANIELE, CIANI, GRAZIELLA, USELI, ANTONELLA, LUISELLI, DONATA, PETTENER, DAVIDE, Martinez Cruz B., Bertranpetit J., Comas D., Sarno S., Boattini A., Carta M., De Fanti S., Sazzini M., Yang Yao D., Ciani G., Useli A., Martinez-Cruz B., Bertranpetit J., Comas D., Luiselli D., and Pettener D
- Abstract
Sicily, due to its strategic geographical position, located in the heart of Mediterranean Basin, has received the passage of various human groups both in pre-historical and historical times, acting as a bridge in different major migratory events. In addition to the Upper Paleolithic and Mesolithic cultures, several migrations have affected the genetic composition of the island after the Neolithic transition (Greeks, Phoenicians, Romans, Arabs and Normans), thus contributing to complicate the genetic landscape of the largest Mediterranean island. Made up of different superimposed historical genetic layers, Sicily offers a unique opportunity to test hypotheses connected with the peopling of Mediterranean shores. Both the presence (Romano et al. 2003, Di Gaetano et al. 2008) and absence (Rickards et al. 1998) of an internal genetic differentiation along the east-west axis has been previously described in Sicily, and several hypotheses, connected with the aforementioned dynamics of peopling, have been proposed to explain the heterogeneity observed. Nevertheless the extent of each independent historical contributions to the current genetic composition of Sicilian population is still highly debated. The present study aims to contribute to this debate using new samples and deeper analyzing the Y chromosome genetic markers. More precisely, a total of 24 Y-SNPs and 17 Y-STRs have been typed in more than 300 individuals from 8 different provinces, 5 in Sicily (Agrigento, Catania, Ragusa-Siracusa, Enna, Trapani) and 3 in Southern Italy (Matera, Lecce, Cosenza). Y-chromosome preliminary results reveal a substantial lack of genetic structure within the island, coupled with high levels of within-population genetic variability. These findings well agree with Sicily's historic role as major migration crossroads. Comparing our results with other Mediterranean populations (Southern Europe, Northern Africa and the Levant) we observe a marked geography-related global structure within the Mediterranean Basin. Two well separated clusters have been identified, suggesting a shared genetic background between north-western Mediterranean populations (Iberian Peninsula and Northern Italy) on one side, and south-eastern ones (Sicily and Southern Italy, Balkan Peninsula, North Africa and Levant) on the other side. The completion of Y-chromosome analysis, as well as the future study of mtDNA variation, will consent to explore more in detail specific issues related to the peopling of Sicily and to clarify its role in Mediterranean genetic context.
- Published
- 2012
3. Genetic characterization, population history and evolutionary medicine perspective in two native south american populations: Yanesha and Wichi
- Author
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Yang Yao, Daniele <1983> and Pettener, Davide
- Subjects
parasitic diseases ,BIO/08 Antropologia - Abstract
Two Amerindian populations from the Peruvian Amazon (Yanesha) and from rural lowlands of the Argentinean Gran Chaco (Wichi) were analyzed. They represent two case study of the South American genetic variability. The Yanesha represent a model of population isolated for long-time in the Amazon rainforest, characterized by environmental and altitudinal stratifications. The Wichi represent a model of population living in an area recently colonized by European populations (the Criollos are the population of the admixed descendents), whose aim is to depict the native ancestral gene pool and the degree of admixture, in relation to the very high prevalence of Chagas disease. The methods used for the genotyping are common, concerning the Y chromosome markers (male lineage) and the mitochondrial markers (maternal lineage). The determination of the phylogeographic diagnostic polymorphisms was carried out by the classical techniques of PCR, restriction enzymes, sequencing and specific mini-sequencing. New method for the detection of the protozoa Trypanosoma cruzi was developed by means of the nested PCR. The main results show patterns of genetic stratification in Yanesha forest communities, referable to different migrations at different times, estimated by Bayesian analyses. In particular Yanesha were considered as a population of transition between the Amazon basin and the Andean Cordillera, evaluating the potential migration routes and the separation of clusters of community in relation to different genetic bio-ancestry. As the Wichi, the gene pool analyzed appears clearly differentiated by the admixed sympatric Criollos, due to strict social practices (deeply analyzed with the support of cultural anthropological tools) that have preserved the native identity at a diachronic level. A pattern of distribution of the seropositivity in relation to the different phylogenetic lineages (the adaptation in evolutionary terms) does not appear, neither Amerindian nor European, but in relation to environmental and living conditions of the two distinct subpopulations.
- Published
- 2011
4. Un ponte tra l’Amazzonia e Ande: i Yanesha dalla Selva Central peruviana
- Author
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YANG YAO, DANIELE, BOATTINI, ALESSIO, CIANI, GRAZIELLA, LUISELLI, DONATA, PETTENER, DAVIDE, Mattei G., Yang Yao D., Boattini A., Mattei G., Ciani G., Luiselli D., and Pettener D
- Published
- 2011
5. BetweenAndes andAmazon: The genetic profile of theArawak‐speakingYanesha
- Author
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Barbieri, Chiara, primary, Heggarty, Paul, additional, Yang Yao, Daniele, additional, Ferri, Gianmarco, additional, De Fanti, Sara, additional, Sarno, Stefania, additional, Ciani, Graziella, additional, Boattini, Alessio, additional, Luiselli, Donata, additional, and Pettener, Davide, additional
- Published
- 2014
- Full Text
- View/download PDF
6. Genetic characterization, population history and evolutionary medicine perspective in two native south american populations: Yanesha and Wichi
- Author
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Pettener, Davide, Yang Yao, Daniele <1983>, Pettener, Davide, and Yang Yao, Daniele <1983>
- Abstract
Two Amerindian populations from the Peruvian Amazon (Yanesha) and from rural lowlands of the Argentinean Gran Chaco (Wichi) were analyzed. They represent two case study of the South American genetic variability. The Yanesha represent a model of population isolated for long-time in the Amazon rainforest, characterized by environmental and altitudinal stratifications. The Wichi represent a model of population living in an area recently colonized by European populations (the Criollos are the population of the admixed descendents), whose aim is to depict the native ancestral gene pool and the degree of admixture, in relation to the very high prevalence of Chagas disease. The methods used for the genotyping are common, concerning the Y chromosome markers (male lineage) and the mitochondrial markers (maternal lineage). The determination of the phylogeographic diagnostic polymorphisms was carried out by the classical techniques of PCR, restriction enzymes, sequencing and specific mini-sequencing. New method for the detection of the protozoa Trypanosoma cruzi was developed by means of the nested PCR. The main results show patterns of genetic stratification in Yanesha forest communities, referable to different migrations at different times, estimated by Bayesian analyses. In particular Yanesha were considered as a population of transition between the Amazon basin and the Andean Cordillera, evaluating the potential migration routes and the separation of clusters of community in relation to different genetic bio-ancestry. As the Wichi, the gene pool analyzed appears clearly differentiated by the admixed sympatric Criollos, due to strict social practices (deeply analyzed with the support of cultural anthropological tools) that have preserved the native identity at a diachronic level. A pattern of distribution of the seropositivity in relation to the different phylogenetic lineages (the adaptation in evolutionary terms) does not appear, neither Amerindian nor European, but in re
- Published
- 2011
7. Between Andes and Amazon: The genetic profile of the Arawak-speaking Yanesha.
- Author
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Barbieri, Chiara, Heggarty, Paul, Yang Yao, Daniele, Ferri, Gianmarco, De Fanti, Sara, Sarno, Stefania, Ciani, Graziella, Boattini, Alessio, Luiselli, Donata, and Pettener, Davide
- Subjects
HISTORY of the Andes ,AMUESHA language ,ARAWAK language ,POPULATION dynamics ,ARCHAEOLOGY - Abstract
ABSTRACT The Yanesha are a Peruvian population who inhabit an environment transitional between the Andes and Amazonia. They present cultural traits characteristic of both regions, including in the language they speak: Yanesha belongs to the Arawak language family (which very likely originated in the Amazon/Orinoco lowlands), but has been strongly influenced by Quechua, the most widespread language family of the Andes. Given their location and cultural make-up, the Yanesha make for an ideal case study for investigating language and population dynamics across the Andes-Amazonia divide. In this study, we analyze data from high and mid-altitude Yanesha villages, both Y chromosome (17 STRs and 16 SNPs diagnostic for assigning haplogroups) and mtDNA data (control region sequences and 3 SNPs and one INDEL diagnostic for assigning haplogroups). We uncover sex-biased genetic trends that probably arose in different stages: first, a male-biased gene flow from Andean regions, genetically consistent with highland Quechua-speakers and probably dating back to Inca expansion; and second, traces of European contact consistent with Y chromosome lineages from Italy and Tyrol, in line with historically documented migrations. Most research in the history, archaeology and linguistics of South America has long been characterized by perceptions of a sharp divide between the Andes and Amazonia; our results serve as a clear case-study confirming demographic flows across that 'divide'. Am J Phys Anthropol 155:600-609, 2014. © 2014 The Authors. American journal of physical Anthropology published by Wiley Periodocals, Inc. [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
- View/download PDF
8. Uniparental Markers in Italy Reveal a Sex-Biased Genetic Structure and Different Historical Strata
- Author
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Boattini, Alessio, Martinez-Cruz, Begoña, Sarno, Stefania, Harmant, Christine, Useli, Antonella, Sanz, Paula, Yang-Yao, Daniele, Manry, Jeremy, Ciani, Graziella, Luiselli, Donata, Quintana-Murci, Lluis, Comas, David, and Pettener, Davide
- Subjects
GENETIC markers ,LANDSCAPES ,Y chromosome ,BIOLOGICAL evolution ,POPULATION genetics ,HUMAN genetics - Abstract
Located in the center of the Mediterranean landscape and with an extensive coastal line, the territory of what is today Italy has played an important role in the history of human settlements and movements of Southern Europe and the Mediterranean Basin. Populated since Paleolithic times, the complexity of human movements during the Neolithic, the Metal Ages and the most recent history of the two last millennia (involving the overlapping of different cultural and demic strata) has shaped the pattern of the modern Italian genetic structure. With the aim of disentangling this pattern and understanding which processes more importantly shaped the distribution of diversity, we have analyzed the uniparentally-inherited markers in ∼900 individuals from an extensive sampling across the Italian peninsula, Sardinia and Sicily. Spatial PCAs and DAPCs revealed a sex-biased pattern indicating different demographic histories for males and females. Besides the genetic outlier position of Sardinians, a North West–South East Y-chromosome structure is found in continental Italy. Such structure is in agreement with recent archeological syntheses indicating two independent and parallel processes of Neolithisation. In addition, date estimates pinpoint the importance of the cultural and demographic events during the late Neolithic and Metal Ages. On the other hand, mitochondrial diversity is distributed more homogeneously in agreement with older population events that might be related to the presence of an Italian Refugium during the last glacial period in Europe. [ABSTRACT FROM AUTHOR]
- Published
- 2013
- Full Text
- View/download PDF
9. Tracing Behçet's disease origins along the Silk Road: An anthropological evolutionary genetics perspective
- Author
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MARCO SAZZINI, Garagnani, P., Sarno, S., Fanti, S., Lazzano, T., Yao, D. Y., Boattini, A., Pazzola, G., Maramotti, S., Boiardi, L., Franceschi, C., Salvarani, C., Luiselli, D., Sazzini, Marco, Garagnani, Paolo, Sarno, Stefania, De Fanti, Sara, Lazzano, Teresa, Yang Yao, Daniele, Boattini, Alessio, Pazzola, Giulia, Maramotti, Sally, Boiardi, Luigi, Franceschi, Claudio, Salvarani, Carlo, and Luiselli, Donata
- Subjects
Genetic Markers ,Asia ,Behcet Syndrome ,Commerce ,Silk ,Sequence Analysis, DNA ,DNA, Mitochondrial ,White People ,Pedigree ,Evolution, Molecular ,Genetics, Population ,Phenotype ,Asian People ,Haplotypes ,Italy ,Risk Factors ,Cluster Analysis ,Humans ,Genetic Predisposition to Disease ,Topography, Medical ,Behçet’s disease, Silk Road, anthropological evolutionary genetics, mitochondrial DNA, gene flow - Abstract
OBJECTIVES: Behçet's disease is a multifactorial vasculitis that shows its highest prevalence in geographical areas historically involved in the Silk Road, suggesting that it might have originated somewhere along these ancient trade routes. This study aims to provide a first clue towards genetic evidence for this hypothesis by testing it via an anthropological evolutionary genetics approach. METHODS: Behçet's disease variation at ancestry informative mitochondrial DNA control region and haplogroup diagnostic sites was characterised in 185 disease subjects of Italian descent and set into the Eurasian mitochondrial landscape by comparison with nearly 9,000 sequences representative of diversity observable in Italy and along the main Silk Road routes. RESULTS: Dissection of the actual genetic ancestry of disease individuals by means of population structure, spatial autocorrelation and haplogroup analyses revealed their closer relationships with some Middle Eastern and Central Asian groups settled along the Silk Road than with healthy Italians. CONCLUSIONS: These findings support the hypothesis that the Behçet's disease genetic risk has migrated to western Eurasia in parallel with ancestry components typical of Silk Road-related groups. This provided new insights that are useful to improve the understanding of disease origins and diffusion, as well as to inform future association studies aimed at properly accounting for the actual genetic ancestry of the examined Behçet's disease samples in order to minimise the detection of spurious associations and to improve the identification of genetic variants with actual clinical relevance.
10. Tracing Behçet's disease origins along the Silk Road: an anthropological evolutionary genetics perspective.
- Author
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Sazzini M, Garagnani P, Sarno S, De Fanti S, Lazzano T, Yang Yao D, Boattini A, Pazzola G, Maramotti S, Boiardi L, Franceschi C, Salvarani C, and Luiselli D
- Subjects
- Asia ethnology, Behcet Syndrome diagnosis, Behcet Syndrome epidemiology, Cluster Analysis, Genetic Predisposition to Disease, Genetics, Population, Haplotypes, Humans, Italy epidemiology, Pedigree, Phenotype, Risk Factors, Sequence Analysis, DNA, Topography, Medical, Asian People genetics, Behcet Syndrome genetics, Commerce, DNA, Mitochondrial genetics, Evolution, Molecular, Genetic Markers, Silk economics, White People genetics
- Abstract
Objectives: Behçet's disease is a multifactorial vasculitis that shows its highest prevalence in geographical areas historically involved in the Silk Road, suggesting that it might have originated somewhere along these ancient trade routes. This study aims to provide a first clue towards genetic evidence for this hypothesis by testing it via an anthropological evolutionary genetics approach., Methods: Behçet's disease variation at ancestry informative mitochondrial DNA control region and haplogroup diagnostic sites was characterised in 185 disease subjects of Italian descent and set into the Eurasian mitochondrial landscape by comparison with nearly 9,000 sequences representative of diversity observable in Italy and along the main Silk Road routes., Results: Dissection of the actual genetic ancestry of disease individuals by means of population structure, spatial autocorrelation and haplogroup analyses revealed their closer relationships with some Middle Eastern and Central Asian groups settled along the Silk Road than with healthy Italians., Conclusions: These findings support the hypothesis that the Behçet's disease genetic risk has migrated to western Eurasia in parallel with ancestry components typical of Silk Road-related groups. This provided new insights that are useful to improve the understanding of disease origins and diffusion, as well as to inform future association studies aimed at properly accounting for the actual genetic ancestry of the examined Behçet's disease samples in order to minimise the detection of spurious associations and to improve the identification of genetic variants with actual clinical relevance.
- Published
- 2015
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