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20 results on '"Yao, Mingjia"'

3. A mammalian methylation array for profiling methylation levels at conserved sequences

Author

Arneson, Adriana, Haghani, Amin, Thompson, Michael J, Pellegrini, Matteo, Kwon, Soo Bin, Vu, Ha, Maciejewski, Emily, Yao, Mingjia, Li, Caesar Z, Lu, Ake T, Morselli, Marco, Rubbi, Liudmilla, Barnes, Bret, Hansen, Kasper D, Zhou, Wanding, Breeze, Charles E, Ernst, Jason, and Horvath, Steve

Subjects
Genetics, Human Genome, Animals, Biomarkers, Conserved Sequence, CpG Islands, DNA Methylation, Epigenesis, Genetic, Humans, Mammals, Mice, Mutation, Protein Processing, Post-Translational, Rats, Transcriptome
Abstract

Infinium methylation arrays are not available for the vast majority of non-human mammals. Moreover, even if species-specific arrays were available, probe differences between them would confound cross-species comparisons. To address these challenges, we developed the mammalian methylation array, a single custom array that measures up to 36k CpGs per species that are well conserved across many mammalian species. We designed a set of probes that can tolerate specific cross-species mutations. We annotate the array in over 200 species and report CpG island status and chromatin states in select species. Calibration experiments demonstrate the high fidelity in humans, rats, and mice. The mammalian methylation array has several strengths: it applies to all mammalian species even those that have not yet been sequenced, it provides deep coverage of conserved cytosines facilitating the development of epigenetic biomarkers, and it increases the probability that biological insights gained in one species will translate to others.

Published
2022

5. The MatHub‐3d first‐principles repository and the applications on thermoelectrics

Author

Liu, Lu, primary, Yao, Mingjia, additional, Wang, Yuxiang, additional, Jin, Yeqing, additional, Ji, Jialin, additional, Luo, Huifang, additional, Cao, Yan, additional, Xiong, Yifei, additional, Sheng, Ye, additional, Li, Xin, additional, Qiu, Di, additional, Xi, Lili, additional, Xi, Jinyang, additional, Zhang, Wenqing, additional, Chen, Lidong, additional, and Yang, Jiong, additional

Published
2024
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10. DNA methylation networks underlying mammalian traits

Author

Haghani, Amin, primary, Li, Caesar Z., additional, Robeck, Todd R., additional, Zhang, Joshua, additional, Lu, Ake T., additional, Ablaeva, Julia, additional, Acosta-Rodríguez, Victoria A., additional, Adams, Danielle M., additional, Alagaili, Abdulaziz N., additional, Almunia, Javier, additional, Aloysius, Ajoy, additional, Amor, Nabil M.S., additional, Ardehali, Reza, additional, Arneson, Adriana, additional, Baker, C. Scott, additional, Banks, Gareth, additional, Belov, Katherine, additional, Bennett, Nigel C., additional, Black, Peter, additional, Blumstein, Daniel T., additional, Bors, Eleanor K., additional, Breeze, Charles E., additional, Brooke, Robert T., additional, Brown, Janine L., additional, Carter, Gerald, additional, Caulton, Alex, additional, Cavin, Julie M., additional, Chakrabarti, Lisa, additional, Chatzistamou, Ioulia, additional, Chavez, Andreas S., additional, Chen, Hao, additional, Cheng, Kaiyang, additional, Chiavellini, Priscila, additional, Choi, Oi-Wa, additional, Clarke, Shannon, additional, Cook, Joseph A., additional, Cooper, Lisa N., additional, Cossette, Marie-Laurence, additional, Day, Joanna, additional, DeYoung, Joseph, additional, Dirocco, Stacy, additional, Dold, Christopher, additional, Dunnum, Jonathan L., additional, Ehmke, Erin E., additional, Emmons, Candice K., additional, Emmrich, Stephan, additional, Erbay, Ebru, additional, Erlacher-Reid, Claire, additional, Faulkes, Chris G., additional, Fei, Zhe, additional, Ferguson, Steven H., additional, Finno, Carrie J., additional, Flower, Jennifer E., additional, Gaillard, Jean-Michel, additional, Garde, Eva, additional, Gerber, Livia, additional, Gladyshev, Vadim N., additional, Goya, Rodolfo G., additional, Grant, Matthew J, additional, Green, Carla B., additional, Hanson, M. Bradley, additional, Hart, Daniel W., additional, Haulena, Martin, additional, Herrick, Kelsey, additional, Hogan, Andrew N., additional, Hogg, Carolyn J., additional, Hore, Timothy A., additional, Huang, Taosheng, additional, Izpisua Belmonte, Juan Carlos, additional, Jasinska, Anna J., additional, Jones, Gareth, additional, Jourdain, Eve, additional, Kashpur, Olga, additional, Katcher, Harold, additional, Katsumata, Etsuko, additional, Kaza, Vimala, additional, Kiaris, Hippokratis, additional, Kobor, Michael S., additional, Kordowitzki, Pawel, additional, Koski, William R., additional, Krützen, Michael, additional, Kwon, Soo Bin, additional, Larison, Brenda, additional, Lee, Sang-Goo, additional, Lehmann, Marianne, additional, Lemaître, Jean-François, additional, Levine, Andrew J., additional, Li, Xinmin, additional, Li, Cun, additional, Lim, Andrea R., additional, Lin, David T. S., additional, Lindemann, Dana M., additional, Liphardt, Schuyler W., additional, Little, Thomas J., additional, Macoretta, Nicholas, additional, Maddox, Dewey, additional, Matkin, Craig O., additional, Mattison, Julie A., additional, McClure, Matthew, additional, Mergl, June, additional, Meudt, Jennifer J., additional, Montano, Gisele A., additional, Mozhui, Khyobeni, additional, Munshi-South, Jason, additional, Murphy, William J., additional, Naderi, Asieh, additional, Nagy, Martina, additional, Narayan, Pritika, additional, Nathanielsz, Peter W., additional, Nguyen, Ngoc B., additional, Niehrs, Christof, additional, Nyamsuren, Batsaikhan, additional, O’Brien, Justine K., additional, Ginn, Perrie O’Tierney, additional, Odom, Duncan T, additional, Ophir, Alexander G., additional, Osborn, Steve, additional, Ostrander, Elaine A., additional, Parsons, Kim M., additional, Paul, Kimberly C., additional, Pedersen, Amy B., additional, Pellegrini, Matteo, additional, Peters, Katharina J., additional, Petersen, Jessica L., additional, Pietersen, Darren W., additional, Pinho, Gabriela M., additional, Plassais, Jocelyn, additional, Poganik, Jesse R., additional, Prado, Natalia A., additional, Reddy, Pradeep, additional, Rey, Benjamin, additional, Ritz, Beate R., additional, Robbins, Jooke, additional, Rodriguez, Magdalena, additional, Russell, Jennifer, additional, Rydkina, Elena, additional, Sailer, Lindsay L., additional, Salmon, Adam B., additional, Sanghavi, Akshay, additional, Schachtschneider, Kyle M., additional, Schmitt, Dennis, additional, Schmitt, Todd, additional, Schomacher, Lars, additional, Schook, Lawrence B., additional, Sears, Karen E., additional, Seifert, Ashley W., additional, Shafer, Aaron B.A., additional, Shindyapina, Anastasia V., additional, Simmons, Melanie, additional, Singh, Kavita, additional, Sinha, Ishani, additional, Slone, Jesse, additional, Snell, Russel G., additional, Soltanmohammadi, Elham, additional, Spangler, Matthew L., additional, Spriggs, Maria, additional, Staggs, Lydia, additional, Stedman, Nancy, additional, Steinman, Karen J., additional, Stewart, Donald T, additional, Sugrue, Victoria J., additional, Szladovits, Balazs, additional, Takahashi, Joseph S., additional, Takasugi, Masaki, additional, Teeling, Emma C., additional, Thompson, Michael J., additional, Van Bonn, Bill, additional, Vernes, Sonja C., additional, Villar, Diego, additional, Vinters, Harry V., additional, Vu, Ha, additional, Wallingford, Mary C., additional, Wang, Nan, additional, Wilkinson, Gerald S., additional, Williams, Robert W., additional, Yan, Qi, additional, Yao, Mingjia, additional, Young, Brent G., additional, Zhang, Bohan, additional, Zhang, Zhihui, additional, Zhao, Yang, additional, Zhao, Peng, additional, Zhou, Wanding, additional, Zoller, Joseph A., additional, Ernst, Jason, additional, Seluanov, Andrei, additional, Gorbunova, Vera, additional, Yang, X. William, additional, Raj, Ken, additional, and Horvath, Steve, additional

Published
2023
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15. Epigenetic clock and methylation studies in elephants

Author

Prado, Natalia A., primary, Brown, Janine L., additional, Zoller, Joseph A., additional, Haghani, Amin, additional, Yao, Mingjia, additional, Bagryanova, Lora R., additional, Campana, Michael G., additional, Maldonado, Jesús, additional, Raj, Ken, additional, Schmitt, Dennis, additional, Robeck, Todd R., additional, and Horvath, Steve, additional

Published
2021
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16. A mammalian methylation array for profiling methylation levels at conserved sequences

Author

Arneson, Adriana, primary, Haghani, Amin, additional, Thompson, Michael J., additional, Pellegrini, Matteo, additional, Kwon, Soo Bin, additional, Vu, Ha, additional, Yao, Mingjia, additional, Li, Caesar Z., additional, Lu, Ake T., additional, Barnes, Bret, additional, Hansen, Kasper D., additional, Zhou, Wanding, additional, Breeze, Charles E., additional, Ernst, Jason, additional, and Horvath, Steve, additional

Published
2021
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18. Epigenetic clock and methylation studies in elephants

Author

Prado, Natalia A., primary, Brown, Janine L., additional, Zoller, Joseph A., additional, Haghani, Amin, additional, Yao, Mingjia, additional, Bagryanova, Lora R., additional, Campana, Michael G., additional, Maldonado, Jesús E., additional, Raj, Ken, additional, Schmitt, Dennis, additional, Robeck, Todd R., additional, and Horvath, Steve, additional

Published
2020
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19. Metallic VS2/graphene heterostructure as an ultra-high rate and high-specific capacity anode material for Li/Na-ion batteries.

Author

Liu, Bo, Gao, Tianyu, Liao, Peiguang, Wen, Yufeng, Yao, Mingjia, Shi, Siqi, and Zhang, Wenqing

Abstract

Graphene has been used as a conductive substrate to improve the electrochemical performance of layered VS2 as an anode material for lithium-ion batteries. However, there is still a lack of in-depth understanding of the synergistic effect between the layered VS2 and graphene, which contributes to the enhanced performance of Li/Na-ion batteries. In this work, using first-principles calculations, we have systematically studied the VS2/graphene heterostructure as an anode material for Li/Na-ion batteries. Our results show that the VS2/graphene heterostructure is a promising anode material with good structural stability, high adsorption strength, high stiffness, intrinsic metallic characteristic after Li/Na adsorption, high theoretical specific capacity, shallow averaged open-circuit voltage and ultra-low ion diffusion barriers. The diffusion barriers are found to be 0.03 eV (Li) and 0.08 eV (Na), superior to that of the widely studied heterostructure materials, which guarantees an extremely fast Li/Na diffusion rate during charge/discharge cycling. The anode overall open-circuit voltages for the Li/Na-ion batteries are calculated to be as low as 0.65 and 0.46 V, and the maximum theoretical storage capacity is 771 and 578 mA h g−1, respectively. The above results provide valuable insights into the experimental set-up of the VS2/graphene nanocomposite anode material for ultra-high rate and high-specific capacity Li/Na-ion batteries. [ABSTRACT FROM AUTHOR]

Published
2021
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20. Metallic VS 2 /graphene heterostructure as an ultra-high rate and high-specific capacity anode material for Li/Na-ion batteries.

Author

Liu B, Gao T, Liao P, Wen Y, Yao M, Shi S, and Zhang W

Abstract

Graphene has been used as a conductive substrate to improve the electrochemical performance of layered VS 2 as an anode material for lithium-ion batteries. However, there is still a lack of in-depth understanding of the synergistic effect between the layered VS 2 and graphene, which contributes to the enhanced performance of Li/Na-ion batteries. In this work, using first-principles calculations, we have systematically studied the VS 2 /graphene heterostructure as an anode material for Li/Na-ion batteries. Our results show that the VS 2 /graphene heterostructure is a promising anode material with good structural stability, high adsorption strength, high stiffness, intrinsic metallic characteristic after Li/Na adsorption, high theoretical specific capacity, shallow averaged open-circuit voltage and ultra-low ion diffusion barriers. The diffusion barriers are found to be 0.03 eV (Li) and 0.08 eV (Na), superior to that of the widely studied heterostructure materials, which guarantees an extremely fast Li/Na diffusion rate during charge/discharge cycling. The anode overall open-circuit voltages for the Li/Na-ion batteries are calculated to be as low as 0.65 and 0.46 V, and the maximum theoretical storage capacity is 771 and 578 mA h g -1 , respectively. The above results provide valuable insights into the experimental set-up of the VS 2 /graphene nanocomposite anode material for ultra-high rate and high-specific capacity Li/Na-ion batteries.

Published
2021
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