86 results on '"Yaqing Yang"'
Search Results
2. MHCII-peptide presentation: an assessment of the state-of-the-art prediction methods
- Author
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Yaqing Yang, Zhonghui Wei, Gabriel Cia, Xixi Song, Fabrizio Pucci, Marianne Rooman, Fuzhong Xue, and Qingzhen Hou
- Subjects
MHCII ,peptide binding prediction ,immunology ,bioinformatics ,webserver ,machine learning ,Immunologic diseases. Allergy ,RC581-607 - Abstract
Major histocompatibility complex Class II (MHCII) proteins initiate and regulate immune responses by presentation of antigenic peptides to CD4+ T-cells and self-restriction. The interactions between MHCII and peptides determine the specificity of the immune response and are crucial in immunotherapy and cancer vaccine design. With the ever-increasing amount of MHCII-peptide binding data available, many computational approaches have been developed for MHCII-peptide interaction prediction over the last decade. There is thus an urgent need to provide an up-to-date overview and assessment of these newly developed computational methods. To benchmark the prediction performance of these methods, we constructed an independent dataset containing binding and non-binding peptides to 20 human MHCII protein allotypes from the Immune Epitope Database, covering DP, DR and DQ alleles. After collecting 11 known predictors up to January 2022, we evaluated those available through a webserver or standalone packages on this independent dataset. The benchmarking results show that MixMHC2pred and NetMHCIIpan-4.1 achieve the best performance among all predictors. In general, newly developed methods perform better than older ones due to the rapid expansion of data on which they are trained and the development of deep learning algorithms. Our manuscript not only draws a full picture of the state-of-art of MHCII-peptide binding prediction, but also guides researchers in the choice among the different predictors. More importantly, it will inspire biomedical researchers in both academia and industry for the future developments in this field.
- Published
- 2024
- Full Text
- View/download PDF
3. A positive association between food insecurity and the prevalence of overactive bladder in U.S. adults
- Author
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Yunfei Xiao, Shan Yin, Yunjin Bai, Jiahao Wang, Jianwei Cui, Yaqing Yang, and Jia Wang
- Subjects
food insecurity ,overactive bladder ,nocturia ,urinary urgency incontinence ,NHANES ,Nutrition. Foods and food supply ,TX341-641 - Abstract
ObjectiveThis study aims to examine the correlation between overactive bladder (OAB) and food insecurity.MethodsWe conducted a cross-sectional analysis utilizing extensive population data derived from the National Health and Nutrition Examination Survey 2007–2018. The status of Household food insecurity is evaluated by the US Food Security Survey Module. To explore the relationship between food insecurity and OAB, three multivariable logistic regression models were carried out. Additionally, interaction and stratified analyses were also performed to find whether some factors have the potential to alter the correlation.ResultsThere were 29,129 participants enrolled in the study. Compared to the other three groups, individuals with full food security exhibited a lower proportion of nocturia, urinary urgency incontinence, and OAB. In the fully-adjusted model, it was found that people experiencing food insecurity have a significantly higher prevalence of OAB compared to those with food security in the fully-adjusted model (OR = 1.540, 95%CI 1.359–1.745). Additionally, there was a significant association between the levels of food insecurity and an increased risk of OAB prevalence was also observed (marginal food security: OR = 1.312, low food security: OR = 1.559, and very low food security: OR = 1.759). No significant interaction was seen in the fully-adjusted model.ConclusionThere is a strong positive correlation between food insecurity and the prevalence of OAB. Similarly, the correlation between levels of food insecurity and OAB also indicates the same trend. Namely, the more insecure food, the higher risk of OAB prevalence in the population.
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- 2024
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4. Prediction of protein-protein interaction sites in intrinsically disordered proteins
- Author
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Ranran Chen, Xinlu Li, Yaqing Yang, Xixi Song, Cheng Wang, and Dongdong Qiao
- Subjects
intrinsically disordered protein (IDP) ,protein interaction sites prediction ,machine learning ,ML ,protein functions ,protein sequence ,Biology (General) ,QH301-705.5 - Abstract
Intrinsically disordered proteins (IDPs) participate in many biological processes by interacting with other proteins, including the regulation of transcription, translation, and the cell cycle. With the increasing amount of disorder sequence data available, it is thus crucial to identify the IDP binding sites for functional annotation of these proteins. Over the decades, many computational approaches have been developed to predict protein-protein binding sites of IDP (IDP-PPIS) based on protein sequence information. Moreover, there are new IDP-PPIS predictors developed every year with the rapid development of artificial intelligence. It is thus necessary to provide an up-to-date overview of these methods in this field. In this paper, we collected 30 representative predictors published recently and summarized the databases, features and algorithms. We described the procedure how the features were generated based on public data and used for the prediction of IDP-PPIS, along with the methods to generate the feature representations. All the predictors were divided into three categories: scoring functions, machine learning-based prediction, and consensus approaches. For each category, we described the details of algorithms and their performances. Hopefully, our manuscript will not only provide a full picture of the status quo of IDP binding prediction, but also a guide for selecting different methods. More importantly, it will shed light on the inspirations for future development trends and principles.
- Published
- 2022
- Full Text
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5. Liquid Content Detection In Transparent Containers: A Benchmark
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You Wu, Hengzhou Ye, Yaqing Yang, Zhaodong Wang, and Shuiwang Li
- Subjects
liquid content estimation ,transparent container detection ,LCDTC dataset ,benchmark ,Chemical technology ,TP1-1185 - Abstract
Various substances that possess liquid states include drinking water, various types of fuel, pharmaceuticals, and chemicals, which are indispensable in our daily lives. There are numerous real-world applications for liquid content detection in transparent containers, for example, service robots, pouring robots, security checks, industrial observation systems, etc. However, the majority of the existing methods either concentrate on transparent container detection or liquid height estimation; the former provides very limited information for more advanced computer vision tasks, whereas the latter is too demanding to generalize to open-world applications. In this paper, we propose a dataset for detecting liquid content in transparent containers (LCDTC), which presents an innovative task involving transparent container detection and liquid content estimation. The primary objective of this task is to obtain more information beyond the location of the container by additionally providing certain liquid content information which is easy to achieve with computer vision methods in various open-world applications. This task has potential applications in service robots, waste classification, security checks, and so on. The presented LCDTC dataset comprises 5916 images that have been extensively annotated through axis-aligned bounding boxes. We develop two baseline detectors, termed LCD-YOLOF and LCD-YOLOX, for the proposed dataset, based on two identity-preserved human posture detectors, i.e., IPH-YOLOF and IPH-YOLOX. By releasing LCDTC, we intend to stimulate more future works into the detection of liquid content in transparent containers and bring more focus to this challenging task.
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- 2023
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6. The Prevention Role of Theaflavin-3,3′-digallate in Angiotensin II Induced Pathological Cardiac Hypertrophy via CaN-NFAT Signal Pathway
- Author
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Hui Zhou, Chen Xia, Yaqing Yang, Hasitha Kalhari Warusawitharana, Xiaohui Liu, and Youying Tu
- Subjects
theaflavin-3,3′-digallate ,pathological cardiac hypertrophy ,oxidative stress ,calcium ion ,calcineurin ,nuclear factor of activated T cells ,Nutrition. Foods and food supply ,TX341-641 - Abstract
Theaflavin-3,3′-digallate (TF3) is a representative theaflavin of black tea and is remarkable for the anti-coronary heart disease effect. As an adaptive response to heart failure, pathological cardiac hypertrophy (PCH) has attracted great interest. In this study, the PCH cell model was established with H9c2 cells by angiotensin II, and the prevention effect and mechanisms of TF3 were investigated. The results showed that the cell size and fetal gene mRNA level were significantly reduced as pretreated with TF3 at the concentration range of 1–10 μM, also the balance of the redox system was recovered by TF3 at the concentration of 10 μM. The intracellular Ca2+ level decreased, Calcineurin (CaN) expression was down-regulated and the p-NFATc3 expression was up-regulated. These results indicated that TF3 could inhibit the activation of the CaN-NFAT signal pathway to prevent PCH, and TF3 may be a potentially effective natural compound for PCH and heart failure.
- Published
- 2022
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7. NMR Detection and Structural Modeling of the Ethylene Receptor LeETR2 from Tomato
- Author
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Shukun Wei, Yaqing Yang, Yuan Yuan, Lingyu Du, Hongjuan Xue, and Bo OuYang
- Subjects
LeETR2 ,AlphaFold2 ,membrane protein expression ,solution NMR ,organic solvent ,molecular docking ,Chemical technology ,TP1-1185 ,Chemical engineering ,TP155-156 - Abstract
The gaseous plant hormone ethylene influences many physiological processes in plant growth and development. Plant ethylene responses are mediated by a family of ethylene receptors, in which the N-terminal transmembrane domains are responsible for ethylene binding and membrane localization. Until now, little structural information was available on the molecular mechanism of ethylene responses by the transmembrane binding domain of ethylene receptors. Here, we screened different constructs, fusion tags, detergents, and purification methods of the transmembrane sensor domain of ethylene receptors. However, due to their highly hydrophobic transmembrane domain (TMD), only a KSI-fused LeETR21–131 from tomato yielded a good-quality nuclear magnetic resonance (NMR) spectrum in the organic solvent. Interestingly, a dimer model of LeETR21–131 built by the AlphaFold2 algorithm showed greatly converged structures. The interaction analysis of ethylene and LeETR21–131 using molecular docking and molecular dynamics (MD) simulations demonstrated the potential binding sites of ethylene in LeETR21–131. Our exploration provides valuable knowledge for further understanding of the ethylene-perception process in ethylene receptors.
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- 2022
- Full Text
- View/download PDF
8. Positive Charges in the Brace Region Facilitate the Membrane Disruption of MLKL-NTR in Necroptosis
- Author
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Yaqing Yang, Encheng Xie, Lingyu Du, Yu Yang, Bin Wu, Liming Sun, Shuqing Wang, and Bo OuYang
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MLKL ,brace helix ,auto-inhibitory ,MD simulation ,Organic chemistry ,QD241-441 - Abstract
Necroptosis is a type of programmed cell death executed through the plasma membrane disruption by mixed lineage kinase domain-like protein (MLKL). Previous studies have revealed that an N-terminal four-helix bundle domain (NBD) of MLKL is the executioner domain for the membrane permeabilization, which is auto-inhibited by the first brace helix (H6). After necroptosis initiation, this inhibitory brace helix detaches and the NBD can integrate into the membrane, and hence leads to necroptotic cell death. However, how the NBD is released and induces membrane rupture is poorly understood. Here, we reconstituted MLKL2–154 into membrane mimetic bicelles and observed the structure disruption and membrane release of the first brace helix that is regulated by negatively charged phospholipids in a dose-dependent manner. Using molecular dynamics simulation we found that the brace region in an isolated, auto-inhibited MLKL2–154 becomes intrinsically disordered in solution after 7 ns dynamic motion. Further investigations demonstrated that a cluster of arginines in the C-terminus of MLKL2–154 is important for the molecular conformational switch. Functional mutagenesis showed that mutating these arginines to glutamates hindered the membrane disruption of full-length MLKL and thus inhibited the necroptotic cell death. These findings suggest that the brace helix also plays an active role in MLKL regulation, rather than an auto-inhibitory domain.
- Published
- 2021
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9. On the Feasibility of Predicting Users' Privacy Concerns using Contextual Labels and Personal Preferences.
- Author
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Yaqing Yang, Tony W. Li, and Haojian Jin
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- 2024
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10. Photosensitization of Carbon Nitride Photoelectrodes with CdS: A Novel Architecture with Highly Efficient Photocatalytic Activity
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Xiaosong Zhou, Fei Yang, Bei Jin, Tang Xu, Yaqing Yang, and Xiaohui Yao
- Subjects
Renewable energy sources ,TJ807-830 - Abstract
CdS with well-defined crystallinity is anchored on carbon nitride photoelectrodes by a successive chemical bath deposition. And the as-synthesized samples were characterized by X-ray diffraction, scanning electron microscopy, transmission electron microscopy, ultraviolet-visible diffuse reflection spectroscopy, X-ray photoelectron spectroscopy, and photoluminescence spectroscopy techniques. The effect of the amount of CdS on the catalytic activity for the degradation of acid Orange II is investigated under visible light irradiation. Results show that the photoelectrodes composed of CdS/CN exhibit much higher catalytic activity than pure CN photoelectrodes. A possible photocatalytic mechanism of the CdS/CN electrodes is proposed under visible light irradiation.
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- 2014
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11. EarCough: Enabling Continuous Subject Cough Event Detection on Hearables.
- Author
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Xiyuxing Zhang, Yuntao Wang 0001, Jingru Zhang, Yaqing Yang, Shwetak N. Patel, and Yuanchun Shi
- Published
- 2023
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12. Lysozyme 1 Inflamed CCR2+ Macrophages Promote Obesity-Induced Cardiac Dysfunction.
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Lai Zhang, Huian Han, Xu, Andi, Sathe, Adwait, Siying Fu, Jiaqi Zhao, Wenhan Cai, Yaqing Yang, Jinting Liu, Hui Bai, Jingjing Ben, Xudong Zhu, Xiaoyu Li, Qing Yang, Zidun Wang, Yayun Gu, Chao Xing, Schiattarella, Gabriele G., Yan Cheng, Steven, and Hanwen Zhang
- Published
- 2024
- Full Text
- View/download PDF
13. MHCII-peptide presentation: an assessment of the state-of-theart prediction methods.
- Author
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Yaqing Yang, Zhonghui Wei, Gabriel Cia, Xixi Song, Pucci, Fabrizio, Rooman, Marianne, Fuzhong Xue, and Qingzhen Hou
- Subjects
MACHINE learning ,MAJOR histocompatibility complex ,DNA-binding proteins ,DEEP learning ,CANCER vaccines ,DATABASES - Abstract
Major histocompatibility complex Class II (MHCII) proteins initiate and regulate immune responses by presentation of antigenic peptides to CD4+ T-cells and self-restriction. The interactions between MHCII and peptides determine the specificity of the immune response and are crucial in immunotherapy and cancer vaccine design. With the ever-increasing amount of MHCII-peptide binding data available, many computational approaches have been developed for MHCIIpeptide interaction prediction over the last decade. There is thus an urgent need to provide an up-to-date overview and assessment of these newly developed computational methods. To benchmark the prediction performance of these methods, we constructed an independent dataset containing binding and nonbinding peptides to 20 human MHCII protein allotypes from the Immune Epitope Database, covering DP, DR and DQ alleles. After collecting 11 known predictors up to January 2022, we evaluated those available through a webserver or standalone packages on this independent dataset. The benchmarking results show that MixMHC2pred and NetMHCIIpan-4.1 achieve the best performance among all predictors. In general, newly developed methods perform better than older ones due to the rapid expansion of data on which they are trained and the development of deep learning algorithms. Our manuscript not only draws a full picture of the state-of-art of MHCII-peptide binding prediction, but also guides researchers in the choice among the different predictors. More importantly, it will inspire biomedical researchers in both academia and industry for the future developments in this field. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
14. Lysosomal Adenosine Triphosphate-Activated Upconversion Nanoparticle/Carbon Dot Composite for Ratiometric Imaging of Hepatotoxicity
- Author
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Ningning Wang, Yaqing Yang, Meng Zhang, Qianqian Zhu, and Zhaohui Li
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Adenosine Triphosphate ,Humans ,Nanoparticles ,Chemical and Drug Induced Liver Injury ,Lysosomes ,Carbon ,Analytical Chemistry - Abstract
Drug-induced hepatotoxicity (DIH) is a common cause of acute liver injury, endangering human health. Intracellular adenosine triphosphate (ATP) content in hepatocytes is related to hepatotoxicity. Thus, monitoring the dynamic changes in lysosomal ATP is promising to further understand the pathogenesis and accurate evaluation of DIH. Herein, we developed a lysosomal ATP-activated upconversion nanoprobe by decorating ATP-sensitive carbon dots (CDs) on the surface of upconversion nanoparticles (UCNPs) for ratiometric imaging of hepatotoxicity. Owing to the excellent optical characteristics of UCNPs as well as the high selectivity and biocompatibility of CDs, this nanoprobe showed robust reversibility and good sensitivity to ATP in an acidic environment. Noticeably, it was successfully applied in imaging the lysosomal ATP levels fluctuation in living cells and deep tissues and used for studying the production and remediation pathways of acetaminophen-induced hepatotoxicity. This nanoprobe is significant for further understanding the pathogenesis of DIH and may be a potentially effective tool for the clinical evaluation of DIH.
- Published
- 2022
15. The synthesis of LiFePO4/C with polyaniline as coated carbon source and sucrose as reducing carbon source
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Xunshuai Yan, Yaqing Yang, Caihong Li, Jianing Liu, Jing Wang, Fan Xi, Tengda Wang, and Weiyan He
- Subjects
General Chemical Engineering ,General Engineering ,General Physics and Astronomy ,General Materials Science - Published
- 2022
16. The photogalvanic effect induced by quantum spin Hall edge states from first-principles calculations
- Author
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Yaqing Yang, Liwen Zhang, Xiaohong Zheng, Jun Chen, Liantuan Xiao, Suotang Jia, and Lei Zhang
- Subjects
General Physics and Astronomy ,Physical and Theoretical Chemistry - Abstract
Based on non-equilibrium Green’s function combined with density functional theory (NEGF-DFT), we theoretically investigate the spin-related photogalvanic effect (PGE) in topological insulator BiBr and SbBr nanoribbons from atomic first-principles calculations....
- Published
- 2023
17. Comparative study of Transfer Learning and VGGNet based classification of Alzheimer's disease
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Qiming Li, Weipeng He, Xiaoyuan Zhang, Yaqing Yang, and Teoh Teik Toe
- Published
- 2022
18. Assist of multi-walled carbon nanotubes toward metal–organic framework chamfer cube-derived rambutan-like cobalt oxide@hollow chain and its application for non-enzymatic glucose sensing
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Yong Zhang, Yuchen Zhao, Yun-Qing Liu, Yaqing Yang, and Xuan Liu
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General Physics and Astronomy ,Surfaces and Interfaces ,General Chemistry ,Condensed Matter Physics ,Surfaces, Coatings and Films - Published
- 2023
19. Highly sensitive and ratiometric detection of nitrite in food based on upconversion-carbon dots nanosensor
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Yaqing Yang, Simin Wei, Jialin Wang, Junjie Li, Jinlu Tang, Albert Aryee Aaron, Qiyong Cai, Ningning Wang, and Zhaohui Li
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Environmental Chemistry ,Biochemistry ,Spectroscopy ,Analytical Chemistry - Published
- 2023
20. Biaxial hyperelastic and anisotropic behaviors of the corneal anterior central stroma along the preferential fibril orientations. Part II: Quantitative computational analysis of mechanical response of stromal components
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Congzheng Wang, Min Shen, Yi Song, Le Chang, Yaqing Yang, Yikuan Li, Taiwei Liu, and Yan Wang
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Biomaterials ,Mechanics of Materials ,Biomedical Engineering - Published
- 2023
21. Multi-pass Hot Deformation Behavior and Microstructure Evolution of Spark Plasma-Sintered Ti-6Al-4V Alloy
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Yaqing Yang, Zhimin Zhang, Jishi Zhang, Yong Xue, Jian Xu, Qiang Wang, Zhaoming Yan, Hongyue Zhao, and Haijun Liu
- Subjects
Stress (mechanics) ,Materials science ,Mechanics of Materials ,Mechanical Engineering ,Dynamic recrystallization ,Recrystallization (metallurgy) ,General Materials Science ,Strain rate ,Severe plastic deformation ,Flow stress ,Deformation (engineering) ,Composite material ,Grain size - Abstract
The spark plasma-sintered Ti-6Al-4V alloy was used as experimental specimens to perform the multi-pass hot compression. The deformation temperature was 950, 900, 850 °C, and the compressed amount was 20, 30, 20% corresponding to one pass, two passes and three passes, respectively. The flow behaviors revealed that the curve with the strain rate of 5 s−1 appeared obvious oscillatory phenomenon after peak. Additionally, the curve with strain rate of 0.1 and 1 s−1 almost kept constant after peak stress during the process of two-pass compression. The microstructures showed that the sintered voids with the average diameter of 7.53 μm could be observed in initial Widmanstatten structures with the aspect ratio of 11.49 ± 0.5. The deformed inhomogeneity had prominent influence on the microstructures. For three-pass deformation with the strain rate of 0.1 s−1, the microstructures of severe plastic deformation area were equiaxial microstructures with the grain diameter of 3.82 μm, while the microstructures for medial and small plastic deformation area were dual and Widmanstatten, respectively. With the strain rate of 0.1 s−1, the fraction of dynamic recrystallization (fDRX) increased from 0.034 through 0.112 to 0.440 with the passes increased, and the variation tendency toward average diameter of grain size versus compressed passes shifted reversely. The β→α phase transformation was the main reason for the misorientation angle nearby 60° for one pass with the strain rate of 0.1 s−1. The fDRX declined from 0.440 through 0.225 to 0.297 with raising the strain rate for three-pass deformation, but the grain size changed oppositely. The CDRX and DDRX were both appeared during multi-pass hot deformation.
- Published
- 2021
22. Research on photogrammetry-based positioning of heavy ion radiotherapy and tumor target monitoring
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Weilong Chen, Yaqing Yang, Bo Zhang, Sun Guozhen, Li-Song Yan, Yuanjie Zheng, Sumin Wang, Jian-Dong Yuan, and Xumeng Zhang
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Nuclear and High Energy Physics ,Measurement method ,medicine.medical_specialty ,Radiation ,business.industry ,medicine.medical_treatment ,Tumor target ,Patient positioning ,Heavy Ion Radiotherapy ,Condensed Matter Physics ,Advanced cancer ,Radiation therapy ,Photogrammetry ,Medicine ,General Materials Science ,Heavy ion therapy ,Radiology ,business - Abstract
Heavy ion therapy is currently recognized as the most advanced cancer radiotherapy approach in the world. This article introduces a high-precision and non-contact measurement method based on close-...
- Published
- 2021
23. Scalable Resource Provisioning For Multi-tenant SaaS With Cloud Functions
- Author
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Zijian Zhang, Can Yang, Junshuai Wang, Gaoze Hou, and Yaqing Yang
- Published
- 2022
24. Three-dimensional third-order gas-kinetic scheme on hybrid unstructured meshes for Euler and Navier-Stokes equations
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Yaqing Yang, Liang Pan, and Kun Xu
- Subjects
Physics::Fluid Dynamics ,General Computer Science ,FOS: Mathematics ,General Engineering ,Numerical Analysis (math.NA) ,Mathematics - Numerical Analysis - Abstract
In this paper, a third order gas kinetic scheme is developed on the three dimensional hybrid unstructured meshes for the numerical simulation of compressible inviscid and viscous flows. A third-order WENO reconstruction is developed on the hybrid unstructured meshes, including tetrahedron, pyramid, prism and hexahedron. A simple strategy is adopted for the selection of big stencil and sub-stencils. Incorporate with the two-stage fourth-order temporal discretization and lower-upper symmetric Gauss-Seidel methods, both explicit and implicit high-order gas-kinetic schemes are developed. A variety of numerical examples, from the subsonic to supersonic flows, are presented to validate the accuracy and robustness for both inviscid and viscous flows.
- Published
- 2022
25. Projektleiter und ��������������� ��� Rektionskomposita im Deutschen und Chinesischen aus der Sicht der Argumentvererbung
- Author
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Aptacy, Jaros��aw and Yaqing, Yang
- Abstract
Literaturstra��e. Chinesisch-deutsche Zeitschrift f��r Sprach- und Literaturwissenschaft, Bd. 19 Nr. 2 (2018)
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- 2022
- Full Text
- View/download PDF
26. Sacubitril/valsartan attenuates myocardial ischemia/reperfusion injury via inhibition of the GSK3β/NF-κB pathway in cardiomyocytes
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Fangping Xiao, Lei Wang, Meng Liu, Mingyue Chen, Hao He, Zhiqiang Jia, Lai Zhang, Yaqing Yang, Qianfan Hu, Mei Hong, and Hanwen Zhang
- Subjects
Inflammation ,Glycogen Synthase Kinase 3 beta ,Receptors, Angiotensin ,Angiotensins ,Biophysics ,NF-kappa B ,Tetrazoles ,Myocardial Reperfusion Injury ,Biochemistry ,Mice ,Animals ,Valsartan ,Neprilysin ,Myocytes, Cardiac ,Molecular Biology - Abstract
In ischemia/reperfusion (I/R) injury, both inflammation and apoptosis play a vital role, and the inhibition of excessive inflammation and apoptosis show substantial clinical potential in the treatment of I/R disease. The role of sacubitril/valsartan (SAC/VAL)-a first-in-class angiotensin receptor-neprilysin inhibitor (ARNI)-in inflammation regulation and apoptosis in the context of I/R injury needs to be further explored. In this study, we investigate the short- and long-term effects of SAC/VAL administration in treating adult murine I/R injury both in vivo and in vitro. Our results verified that the application of SAC/VAL could reduce infarct size and suppress apoptosis and the inflammatory response in the acute phase post I/R. Long-term application of SAC/VAL for four weeks significantly improved ventricular function and reversed pathological ventricular remodeling. Mechanistically, SAC/VAL treatment induces the inhibition of the GSK3β-mediated NF-κB pathway through synergistically blocking angiotensin 1 receptor (AT1R) and activating natriuretic peptide receptor (NPR). In summary, we reported the therapeutic role of SAC/VAL in regulating the GSK3β/NF-κB signaling pathway to suppress the inflammatory response and apoptosis, thereby reducing cardiac dysfunction and remodeling post I/R.
- Published
- 2022
27. Information Linkages in a Financial Market with Imperfect Competition
- Author
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Youcheng Lou and Yaqing Yang
- Subjects
Economics and Econometrics ,History ,Control and Optimization ,Polymers and Plastics ,Applied Mathematics ,Business and International Management ,Industrial and Manufacturing Engineering - Published
- 2022
28. Information Sharing in a Perfectly Competitive Market
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Youcheng Lou and Yaqing Yang
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History ,Polymers and Plastics ,Business and International Management ,Industrial and Manufacturing Engineering - Published
- 2022
29. An efficient automatic positioning system design for batched magnets and magnetic field measurement system of HIAF
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Wenjun Chen, Yaqing Yang, Xudong Zhang, Yajun Zheng, Bin Zhang, Xiaodong Zhang, Jing Yang, Xiang Zhang, Saoming Wang, Jiandong Yuan, and Guozhen Sun
- Subjects
Nuclear and High Energy Physics ,Instrumentation - Published
- 2023
30. Recent Advance of Machine Learning in Selecting New Materials
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Yufei Zhao, Yaqing Yang, Ruoyu Wang, Yaofeng Hu, and Xingyi Qi
- Subjects
General Chemistry - Published
- 2023
31. NMR Detection and Structural Modeling of the Ethylene Receptor LeETR2 from Tomato
- Author
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Shukun Wei, Yaqing Yang, Yuan Yuan, Lingyu Du, Hongjuan Xue, and Bo OuYang
- Subjects
Process Chemistry and Technology ,Chemical Engineering (miscellaneous) ,Filtration and Separation ,LeETR2 ,AlphaFold2 ,membrane protein expression ,solution NMR ,organic solvent ,molecular docking ,molecular dynamics simulation - Abstract
The gaseous plant hormone ethylene influences many physiological processes in plant growth and development. Plant ethylene responses are mediated by a family of ethylene receptors, in which the N-terminal transmembrane domains are responsible for ethylene binding and membrane localization. Until now, little structural information was available on the molecular mechanism of ethylene responses by the transmembrane binding domain of ethylene receptors. Here, we screened different constructs, fusion tags, detergents, and purification methods of the transmembrane sensor domain of ethylene receptors. However, due to their highly hydrophobic transmembrane domain (TMD), only a KSI-fused LeETR21–131 from tomato yielded a good-quality nuclear magnetic resonance (NMR) spectrum in the organic solvent. Interestingly, a dimer model of LeETR21–131 built by the AlphaFold2 algorithm showed greatly converged structures. The interaction analysis of ethylene and LeETR21–131 using molecular docking and molecular dynamics (MD) simulations demonstrated the potential binding sites of ethylene in LeETR21–131. Our exploration provides valuable knowledge for further understanding of the ethylene-perception process in ethylene receptors.
- Published
- 2021
32. Research on the layout of primary control network and new measurement method for the HIAF survey and alignment
- Author
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Wenjun Chen, Yaqing Yang, Xiaodong Zhang, Yajun Zheng, Bing Zhang, Dingliang Yang, Xudong Zhang, Shaoming Wang, Jiandong Yuan, and Guozheng Sun
- Subjects
Nuclear and High Energy Physics ,Instrumentation - Published
- 2022
33. Korpusgestützte Analyse der Verben ernennen und 任命 (renming): ein fremdsprachenunterricht-orientierter deutsch-chinesischer Vergleich
- Author
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Yaqing, Yang, primary and Aptacy, Jarosław, additional
- Published
- 2021
- Full Text
- View/download PDF
34. Wedge Mechanism Based on the Regulation of Suspension Bracket of Thin Quadrupole Group
- Author
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Bin Zhang, Yongxiang Pan, Jiuwei Yu, Haijiao Lu, Yajun Zhen, Xiaowei Xu, and Yaqing Yang
- Subjects
Parametric design ,Mechanism (engineering) ,Materials science ,business.product_category ,Group (periodic table) ,Bracket ,Quadrupole ,Base (geometry) ,sense organs ,Mechanics ,Suspension (vehicle) ,business ,Wedge (mechanical device) - Abstract
The installation spacing of thin quadrupole group is very small, the traditional base support adjustment support is changed to suspension regulating bracket, which meets the stability and adjustment accuracy of thin quadrupole. The motion and force, transmission efficiency, self-locking conditions of wedge mechanism for small spacing direction adjustment are studied, and the parametric design of wedge mechanism is studied.
- Published
- 2021
35. Factors Impacting the Sustainable Development of Professional Learning Communities in Interdisciplinary Subjects in Chinese K-12 Schools: A Case Study
- Author
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Yiyun Hu, Xiaoli Jing, and Yaqing Yang
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Renewable Energy, Sustainability and the Environment ,professional learning communities in interdisciplinary subjects ,teachers’ professional development ,teacher learning ,sustainable development ,China ,Geography, Planning and Development ,Building and Construction ,Management, Monitoring, Policy and Law - Abstract
Professional learning communities are recognized as one of the most effective approaches for promoting the professional development of teachers. In the current complex and rapidly changing era, to facilitate the implementation of interdisciplinary curricula, Chinese schools have made tremendous efforts to enhance teacher professional development, particularly by establishing professional learning communities. Aiming to understand the operation of professional learning communities in interdisciplinary subjects in Chinese K-12 schools and to examine factors impacting the sustainable development of these professional learning communities, we conducted a case study on professional learning communities in the interdisciplinary subject of Education for International Understanding in Chengdu Horsens Primary School. As part of this study, we interviewed the principal, course director, seed teachers and teachers participating in the selected case. The research results demonstrated that the major factors impacting the sustainable development of professional learning communities in interdisciplinary subjects in Chinese K-12 schools include school structures and policies, school leadership, teachers’ professionalism and learning capacity and their sense of community. In addition, compared to traditional subject-based professional learning communities in China, professional learning communities in interdisciplinary subjects highlight a sense of community, which presents three distinctive features: a conflict-inclusive atmosphere, the coexistence of individual and shared visions and an emotional bonding identity. These three features also have a considerable impact on the sustainable development of professional learning communities in interdisciplinary subjects in Chinese K-12 schools.
- Published
- 2022
36. Positive Charges in the Brace Region Facilitate the Membrane Disruption of MLKL-NTR in Necroptosis
- Author
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Yu Yang, Encheng Xie, Yaqing Yang, Shuqing Wang, Bo OuYang, Lingyu Du, Liming Sun, and Bin Wu
- Subjects
Programmed cell death ,Protein Conformation ,Necroptosis ,Pharmaceutical Science ,Glutamic Acid ,Organic chemistry ,Apoptosis ,Model lipid bilayer ,Molecular Dynamics Simulation ,Inhibitory postsynaptic potential ,Article ,Analytical Chemistry ,QD241-441 ,Protein Domains ,Drug Discovery ,auto-inhibitory ,Humans ,Amino Acid Sequence ,Physical and Theoretical Chemistry ,Chemistry ,Mutagenesis ,Cell Membrane ,MD simulation ,Brace ,Membrane ,Chemistry (miscellaneous) ,Helix ,Biophysics ,Molecular Medicine ,brace helix ,Protein Kinases ,MLKL - Abstract
Necroptosis is a type of programmed cell death executed through the plasma membrane disruption by mixed lineage kinase domain-like protein (MLKL). Previous studies have revealed that an N-terminal four-helix bundle domain (NBD) of MLKL is the executioner domain for the membrane permeabilization, which is auto-inhibited by the first brace helix (H6). After necroptosis initiation, this inhibitory brace helix detaches and the NBD can integrate into the membrane, and hence leads to necroptotic cell death. However, how the NBD is released and induces membrane rupture is poorly understood. Here, we reconstituted MLKL2–154 into membrane mimetic bicelles and observed the structure disruption and membrane release of the first brace helix that is regulated by negatively charged phospholipids in a dose-dependent manner. Using molecular dynamics simulation we found that the brace region in an isolated, auto-inhibited MLKL2–154 becomes intrinsically disordered in solution after 7 ns dynamic motion. Further investigations demonstrated that a cluster of arginines in the C-terminus of MLKL2–154 is important for the molecular conformational switch. Functional mutagenesis showed that mutating these arginines to glutamates hindered the membrane disruption of full-length MLKL and thus inhibited the necroptotic cell death. These findings suggest that the brace helix also plays an active role in MLKL regulation, rather than an auto-inhibitory domain.
- Published
- 2021
37. Analyzing the impact of CFP1 mutational landscape on epigenetic signaling
- Author
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Kin Chan, Yidai Yang, Yaqing Yang, and Jean-François Couture
- Subjects
Lysine ,medicine.disease_cause ,Biochemistry ,Epigenesis, Genetic ,03 medical and health sciences ,0302 clinical medicine ,Neoplasms ,Genetics ,medicine ,Animals ,Humans ,Epigenetics ,Molecular Biology ,030304 developmental biology ,0303 health sciences ,biology ,Cancer ,Methylation ,medicine.disease ,Gene Expression Regulation, Neoplastic ,Histone ,Acetylation ,030220 oncology & carcinogenesis ,DNA methylation ,Mutation ,biology.protein ,Trans-Activators ,Carcinogenesis ,Biotechnology - Abstract
CXXC Zinc finger protein 1 (CFP1) is a multitasking protein playing essential roles during various developmental processes. Its ability to interact with several proteins contribute to several epigenetic events. Here, we review CFP1's functions and its impact on DNA methylation and the post-translational modification of histone proteins such as lysine acetylation and methylation. We will also discuss the potential role of CFP1 in carcinogenesis and the impact of the mutations identified in patients suffering from various cancers.
- Published
- 2021
38. An amphipathic Bax core dimer forms part of the apoptotic pore wall in the mitochondrial␣membrane
- Author
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Lingyu Du, David W. Andrews, Fujiao Lv, Yaqing Yang, Jialing Lin, Fei Qi, James J. Chou, Alessandro Piai, Justin Pogmore, Justin Kale, Maorong Wen, Bo OuYang, Shuqing Wang, Liujuan Zhou, Bin Wu, Juan del Rosario, Zhi Zhang, and Zhijun Liu
- Subjects
Dimer ,Lipid Bilayers ,Apoptosis ,Mitochondrion ,Biology ,Article ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,chemistry.chemical_compound ,bax core dimer ,0302 clinical medicine ,Structural Biology ,Amphiphile ,Humans ,membrane lipid bilayer ,functional mutagenesis ,Membrane & Intracellular Transport ,Inner mitochondrial membrane ,Lipid bilayer ,Molecular Biology ,bcl-2-Associated X Protein ,030304 developmental biology ,0303 health sciences ,General Immunology and Microbiology ,pore formation ,General Neuroscience ,Bilayer ,Articles ,Mitochondria ,3. Good health ,Cytosol ,chemistry ,Mitochondrial Membranes ,Biophysics ,NMR structure ,Autophagy & Cell Death ,lipids (amino acids, peptides, and proteins) ,Bacterial outer membrane ,030217 neurology & neurosurgery - Abstract
Bax proteins form pores in the mitochondrial outer membrane to initiate apoptosis. This might involve their embedding in the cytosolic leaflet of the lipid bilayer, thus generating tension to induce a lipid pore with radially arranged lipids forming the wall. Alternatively, Bax proteins might comprise part of the pore wall. However, there is no unambiguous structural evidence for either hypothesis. Using NMR, we determined a high‐resolution structure of the Bax core region, revealing a dimer with the nonpolar surface covering the lipid bilayer edge and the polar surface exposed to water. The dimer tilts from the bilayer normal, not only maximizing nonpolar interactions with lipid tails but also creating polar interactions between charged residues and lipid heads. Structure‐guided mutations demonstrate the importance of both types of protein–lipid interactions in Bax pore assembly and core dimer configuration. Therefore, the Bax core dimer forms part of the proteolipid pore wall to permeabilize mitochondria., NMR structures of membrane‐bound Bax core dimer reveal dual interactions with non‐polar tails and charged heads of bilayer lipids contributing directly to apoptotic mitochondrial permeabilization.
- Published
- 2021
39. Alignment of heavy ion therapy center vertical terminal
- Author
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J. M. Yuan, Chen Wenjun, Guo-Zhu Cai, Shaoming Wang, Yajun Zheng, and Yaqing Yang
- Subjects
010302 applied physics ,Physics ,Nuclear and High Energy Physics ,Radiation ,Cancer therapy ,02 engineering and technology ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,01 natural sciences ,Nuclear physics ,Terminal (electronics) ,Laser tracker ,0103 physical sciences ,General Materials Science ,Center (algebra and category theory) ,Heavy ion ,Heavy ion therapy ,0210 nano-technology - Abstract
Wuwei heavy ion therapy center is the first Chinese heavy ion accelerator facility developed for cancer therapy, in which four terminals are distributed and the height of the vertical terminal is u...
- Published
- 2019
40. Composition-dependent lithium storage performances of SnS/SnO2 heterostructures sandwiching between spherical graphene
- Author
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Haihua Tao, Zhiwen Chen, Yong Jiang, Yaqing Yang, Shoushuang Huang, Zhixuan Wang, Jinlong Jiang, Yanyan Wang, Hua Zhuang, and Bing Zhao
- Subjects
Materials science ,Graphene ,General Chemical Engineering ,Composite number ,chemistry.chemical_element ,Nanoparticle ,Heterojunction ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Electrochemistry ,01 natural sciences ,Electron transport chain ,0104 chemical sciences ,law.invention ,Ion ,chemistry ,Chemical engineering ,law ,Lithium ,0210 nano-technology - Abstract
Heterostructures have broad potential application in energy conversion material and optoelectronic device since of novel interface effect and enhanced electron transport dynamics at heterointerfaces. Herein, we report a heterostructured SnS/SnO2/spherical graphene composite, in which ultrafine SnS/SnO2 nanoparticles with heterostructures are sandwiched between multi-layers of graphene sheets, exhibiting a hollow spherical architecture as a whole. Detailed electrochemical studies indicate that the molar ratio of SnS to SnO2 has great influence on the charge transport efficiency. Theoretical calculation reveals that SnS and SnO2 exhibit different work functions and the Fermi level shift is affected by the SnS/SnO2 molar ratio, thus the hybrid with the ratio close to 1.0 owns the most adsorbed lithium ions, which leads to the highest specific charge-transfer kinetics and lowest ion-diffusion resistance than other samples. Electrochemical tests show that the composite with appropriate composition delivers the best lithium storage rate performance (620 and 312.7 mAh g−1 at 1 C and 10 C). A much stable and high reversible specific capacity of 850 mAh g−1 is obtained after 200 cycles at 0.1 C. The appropriate molar ratio of nano-heterostructures and the novel sandwich hollow spherical composite structure are attributed to the excellent electrochemical performances.
- Published
- 2019
41. CoNiSe2 heteronanorods decorated with layered-double-hydroxides for efficient hydrogen evolution
- Author
-
Qingsheng Gao, Wenbiao Zhang, Yi Tang, Yongle Xiao, Yaqing Yang, Zhangping Shi, and Xiao-Ming Cao
- Subjects
Electrolysis ,Materials science ,Process Chemistry and Technology ,Alkaline water electrolysis ,Oxygen evolution ,Layered double hydroxides ,02 engineering and technology ,engineering.material ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Electrocatalyst ,01 natural sciences ,Catalysis ,0104 chemical sciences ,law.invention ,Chemical engineering ,Chemisorption ,law ,engineering ,Water splitting ,0210 nano-technology ,General Environmental Science - Abstract
Efficient electrocatalysts for hydrogen evolution reaction (HER) are critical to reduce energy losses in alkaline water electrolysis. Herein, CoNiSe2 heteronanorods decorated with layered-double-hydroxides (LDHs) nanosheets are designed, in which the selenide-LDHs interfaces can boost H2O chemisorption to produce reactive H intermediate, resulting in fast HER kinetics. Such promotion in HER is further interpreted by theoretical calculation and in-situ Raman investigation. By contrast, it’s negligible for anodic oxygen evolution. Assembled as an electrolyzer for overall water splitting, the heteronanorods afford a quite low cell voltage of 1.44 V at a geometric current density of 10 mA cm−2 and remarkable stability for more than 48 h in 1.0 M KOH, performing among the best of non-precious electrocatalysts. Identifying efficient electrocatalysis on engineered heterointerfaces, this work is anticipated to open up new opportunities for catalyst design in energy chemistry.
- Published
- 2019
42. One-step hydrothermal reduction synthesis of tiny Sn/SnO2 nanoparticles sandwiching between spherical graphene with excellent lithium storage cycling performances
- Author
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Yi Jiang, Yaqing Yang, Zhixuan Wang, Zhiwen Chen, Shoushuang Huang, Jian Si, Daiyun Song, Bing Zhao, and Yong Jiang
- Subjects
Materials science ,Graphene ,Economies of agglomeration ,General Chemical Engineering ,Composite number ,Nanoparticle ,chemistry.chemical_element ,One-Step ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,Hydrothermal circulation ,0104 chemical sciences ,Amorphous solid ,law.invention ,Chemical engineering ,chemistry ,law ,Electrochemistry ,Lithium ,0210 nano-technology - Abstract
The reunion of Sn is always a troublesome issue when it’s used as the energy storage materials, on the one hand it comes from the preparation process due to its low melting point, and on the other hand it comes from the Li-Sn alloying process because of its natural tendency of migration. The Sn/SnO2/spherical graphene composite prepared by one-step low temperature hydrothermal reduction method can effectively solve this problem. In the composite, Sn/SnO2 tiny nanoparticles with average diameter of 5 nm distribute evenly between multilayers of graphene sheets presenting a hollow spherical structure. The introduction of SnO2 can effectively restrain the agglomeration of Sn nanoparticles during alloying process since an amorphous Li2O matrix is formed to separate the adjacent active particles. The sandwich graphene hollow sphere skeleton effectively buffers the volume expansion of Sn/SnO2 and further restricts their migration and agglomeration. Due to the above advantages, the nano-Li2O generating from the decomposition of SnO2 can contact closely with excessive nano-Sn in restricted area, promoting facile conversed conversion reaction. Therefore, the composite exhibits high reversible capacity and excellent cycle performance. A stable and high specific capacity of 843.8 mAh g−1 is obtained after 100 cycles at 0.1 C.
- Published
- 2018
43. An electrically switchable anti-ferroelectric bilayer In
- Author
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Yaqing, Yang, Liwen, Zhang, Jun, Chen, Xiaohong, Zheng, Lei, Zhang, Liantuan, Xiao, and Suotang, Jia
- Abstract
Based on non-equilibrium Green's function combined with density functional theory (NEGF-DFT), we theoretically investigate the spin-related photogalvanic effect (PGE) in two anti-ferroelectric bilayer In
- Published
- 2021
44. Isoforskolin, an adenylyl cyclase activator, attenuates cigarette smoke-induced COPD in rats
- Author
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Haochang Lin, Sha Cheng, Xue Cao, Deyou Zeng, Weimin Yang, Xinhua Wang, Hongxiang Wu, Rong Huang, Chen Chen, Rongping Zhang, Zhiying Weng, Yaqing Yang, Xiaohua Du, Peihua Peng, Runfeng Li, Zifeng Yang, Li Xian, Yaping Liang, Chuang Xiao, Lueli Wang, and Xiu-Juan Zhang
- Subjects
Guinea Pigs ,Phytochemicals ,Pharmaceutical Science ,Inflammation ,Lung injury ,Pharmacology ,Pulmonary function testing ,Pulmonary Disease, Chronic Obstructive ,Smoke ,Drug Discovery ,Coleus ,Medicine ,Animals ,Humans ,Kidney ,COPD ,Lung ,medicine.diagnostic_test ,business.industry ,Colforsin ,Smoking ,respiratory system ,medicine.disease ,respiratory tract diseases ,Rats ,Bronchoalveolar lavage ,medicine.anatomical_structure ,HEK293 Cells ,Complementary and alternative medicine ,Molecular Medicine ,medicine.symptom ,business ,Ex vivo ,Adenylyl Cyclases - Abstract
Background Chronic obstructive pulmonary disease (COPD) is characterized by limited airflow due to pulmonary and alveolar abnormalities from exposure to cigarette smoke (CS). Current therapeutic drugs are limited and the development of novel treatments to prevent disease progression is challenging. Isoforskolin (ISOF) from the plant Coleus forskohlii is an effective activator of adenylyl cyclase (AC) isoforms. Previously we found ISOF could attenuate acute lung injury in animal models, while the effect of ISOF on COPD has not been elucidated. Purpose In this study, we aimed to evaluate the efficacy of ISOF on COPD and reveal its potential mechanisms. Methods A rat model of COPD was established by long-term exposure to CS, then the rats were orally administered with ISOF (0.5, 1 and 2 mg/kg). The pulmonary function, lung morphology, inflammatory cells and cytokines in serum or bronchoalveolar lavage fluid (BALF) were evaluated. Transcriptomics, proteomics and network pharmacology analysis were utilized to identify potential mechanisms of ISOF. Droplet digital PCR was used to detect the mRNA expression of AC1-10 in donor lung tissues. AC activation was determined in recombinant human embryonic kidney 293 (HEK293) cells stably expressing human AC isoforms. In addition, ISOF caused trachea relaxation ex vivo were assessed in isolated trachea rings from guinea pigs. Results ISOF significantly ameliorated pathological damage of lung tissue and improved pulmonary function in COPD rats. ISOF treatment decreased the number of inflammatory cells in peripheral blood, and also the levels of pro-inflammatory cytokines in serum and BALF. Consistent with omics-based analyses, ISOF markedly downregulated the mTOR level in lung tissue. Flow cytometry analysis revealed that ISOF treatment reduced the ratio of Th17/Treg cells in peripheral blood. Furthermore, the expression levels of AC1 and AC2 are relatively higher than other AC isoforms in normal lung tissues, and ISOF could potently activate AC1 and AC2 in vitro and significantly relax isolated guinea pig trachea. Conclusion Collectively, our studies suggest that ISOF exerts its anti-COPD effect by improving lung function, anti-inflammation and trachea relaxation, which may be related to AC activation, mTOR signaling and Th17/Treg balance.
- Published
- 2021
45. An electrically switchable anti-ferroelectric bilayer In2Se3 based opto-spintronic device
- Author
-
Jun Chen, Xiaohong Zheng, Liantuan Xiao, Yaqing Yang, Lei Zhang, Suotang Jia, and Liwen Zhang
- Subjects
Photocurrent ,Materials science ,Photon ,Condensed matter physics ,Spintronics ,Spin polarization ,Bilayer ,General Materials Science ,Condensed Matter::Mesoscopic Systems and Quantum Hall Effect ,Polarization (electrochemistry) ,Spin (physics) ,Ferroelectricity - Abstract
Based on non-equilibrium Green's function combined with density functional theory (NEGF-DFT), we theoretically investigate the spin-related photogalvanic effect (PGE) in two anti-ferroelectric bilayer In2Se3 structures by atomic first-principles calculations. It is found that, due to the absence of inversion symmetry and the presence of strong spin–orbital interaction (SOI) in anti-ferroelectric bilayer In2Se3, the photoinduced charge-to-spin conversion can be achieved via the PGE. The generated spin-dependent photocurrent is largely spin-polarized and the corresponding spin polarization can vary from 0% to 100% depending on the photon energies, polarization and incident angles. Furthermore, it is found that, by tuning the polarization and the incident angles of light, the fully spin-polarized and pure spin photocurrent can be obtained. Most importantly, the spin dependent photocurrent can be largely tuned through the transition between two anti-ferroelectric bilayer In2Se3 states by the gate voltage. The defined relative spin dependent photoresponse change ratio ns between two states is extremely large and its maximum value can be in the order of ∼104. Therefore, our work demonstrates the great potential of bilayer In2Se3's novel application in two-dimensional non-volatile opto-spintronic devices.
- Published
- 2021
46. Amphipathic Bax core dimer forms part of apoptotic pore wall in the mitochondrial membrane
- Author
-
Alessandro Piai, Jialing Lin, Liujuan Zhou, James J. Chou, Bo OuYang, David W. Andrews, Juan del Rosario, Fujiao Lv, Bin Wu, Zhijun Liu, Maorong Wen, Lingyu Du, Fei Qi, Zhi Zhang, and Yaqing Yang
- Subjects
Cytosol ,chemistry.chemical_compound ,Chemistry ,Bilayer ,Dimer ,Amphiphile ,Biophysics ,lipids (amino acids, peptides, and proteins) ,Mitochondrion ,Lipid bilayer ,Bacterial outer membrane ,Inner mitochondrial membrane - Abstract
SummaryBax proteins form pores in the mitochondrial outer membrane to initiate apoptosis. They may embed in the cytosolic leaflet of the lipid bilayer generating tension to induce a lipid pore with radially arranged lipids forming the wall. Alternatively, they may comprise part of the pore wall. However, there is no unambiguous structural evidence for either hypothesis. Using NMR, we determine a high-resolution structure of the Bax core region that forms a dimer with the nonpolar surface covering the lipid bilayer edge and the polar surface exposed to water. The dimer tilts from the bilayer normal, not only maximizing nonpolar interactions with lipid tails but creating polar interactions between charged residues and lipid heads. Structure-guided mutations demonstrate the importance of both protein-lipid interactions in Bax pore assembly and core dimer configuration. Therefore, the Bax core dimer forms part of the proteolipid pore wall to permeabilize mitochondria.
- Published
- 2020
47. Giant magnetoresistance and dual spin filtering effect in ferromagnetic 6,6,12/γ-graphyne zigzag nanoribbon lateral heterojunction
- Author
-
Liantuan Xiao, Suotang Jia, Yaqing Yang, Xiaohong Zheng, Liwen Zhang, Jun Chen, and Lei Zhang
- Subjects
Materials science ,Spintronics ,Condensed matter physics ,Spin polarization ,General Physics and Astronomy ,Heterojunction ,Biasing ,Giant magnetoresistance ,02 engineering and technology ,Condensed Matter::Mesoscopic Systems and Quantum Hall Effect ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,0104 chemical sciences ,Graphyne ,Zigzag ,Ferromagnetism ,Physical and Theoretical Chemistry ,0210 nano-technology - Abstract
Based on non-equilibrium Green's function combined with density functional theory (NEGF-DFT), we investigate the spin dependent transport in the ferromagnetic 6,6,12/γ-graphyne zigzag nanoribbon (GYZNR) heterojunction under different magnetic configurations. It is found that, at low bias ([−0.05, 0.1] V), the junction presents metallic transport with negligible spin polarization in parallel configuration (PC) while it behaves as an insulator in anti-parallel configuration (APC), which results in giant magnetoresistance. Interestingly, when we increase the bias voltage beyond [−0.05, 0.1] V, dual spin filtering characterized by electron transport of different spin channels under different polarity of bias is observed in APC but not in PC. All these findings are understood from the symmetry matching of wave functions in two nanoribbons at equilibrium or finite bias. Furthermore, dual spin filtering can also be achieved in PC by applying a gate voltage on the central interface region, which arises from the shift of different single spin channel of the central gate region into the bias window at a different polarity of the gate voltage. Thus, our work demonstrates the great potential of the 6,6,12/γ-GYZNR heterojunction as a multi-functional device and its great perspectives in carbon-based nanoelectronics and spintronics.
- Published
- 2020
48. Effect of Steel Wires on the Microwave Pyrolysis of Tire Powders
- Author
-
Xiqiang Zhao, Yaqing Yang, Li Liu, Xu Lv, Zhanlong Song, Mengmei Xie, and Yecheng Yan
- Subjects
Materials science ,Renewable Energy, Sustainability and the Environment ,Waste tires ,020209 energy ,General Chemical Engineering ,Metallurgy ,Microwave pyrolysis ,02 engineering and technology ,General Chemistry ,010501 environmental sciences ,01 natural sciences ,0202 electrical engineering, electronic engineering, information engineering ,Environmental Chemistry ,Pyrolysis ,Microwave ,0105 earth and related environmental sciences - Abstract
The discharge caused by metals triggered by microwave radiation is a key issue, whereas little attention was paid to the pyrolysis of waste tires by using the interaction between microwave and meta...
- Published
- 2018
49. In-situ sulfuration synthesis of sandwiched spherical tin sulfide/sulfur-doped graphene composite with ultra-low sulfur content
- Author
-
Zhixuan Wang, Yanyan Wang, Shanshan Wang, Yong Jiang, Yaqing Yang, Zhiwen Chen, Shoushuang Huang, and Bing Zhao
- Subjects
Materials science ,Nanocomposite ,Renewable Energy, Sustainability and the Environment ,Graphene ,Composite number ,Energy Engineering and Power Technology ,chemistry.chemical_element ,Nanoparticle ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,Sulfur ,0104 chemical sciences ,Anode ,law.invention ,chemistry ,Chemical engineering ,law ,Electrode ,Electrical and Electronic Engineering ,Physical and Theoretical Chemistry ,0210 nano-technology ,Stoichiometry - Abstract
SnS is widely studied as anode materials since of its superior structural stability and physicochemical property comparing with other Sn-based composites. Nevertheless, the inconvenience of phase morphology control and excessive consumption of sulfur sources during synthesis hinder the scalable application of SnS nanocomposites. Herein, we report a facile in-situ sulfuration strategy to synthesize sandwiched spherical SnS/sulfur-doped graphene (SnS/S-SG) composite. An ultra-low sulfur content with approximately stoichiometric ratio of Sn:S can effectively promote the sulfuration reaction of SnO2 to SnS and simultaneous sulfur-doping of graphene. The as-prepared SnS/S-SG composite shows a three-dimensional interconnected spherical structure as a whole, in which SnS nanoparticles are sandwiched between the multilayers of graphene sheets forming a hollow sphere. The sandwiched sphere structure and high S doping amount can improve the binding force between SnS and graphene, as well as the structural stability and electrical conductivity of the composite. Thus, a high reversibility of conversion reaction, promising specific capacity (772 mAh g−1 after 100 cycles at 0.1 C) and excellent rate performance (705 and 411 mAh g−1 at 1 C and 10 C, respectively) are exhibited in the SnS/S-SG electrode, which are much higher than that of the SnS/spherical graphene synthesized by traditional post-sulfuration method.
- Published
- 2018
50. Characteristics of limonene formation during microwave pyrolysis of scrap tires and quantitative analysis
- Author
-
Xiqiang Zhao, Li Liu, Yaqing Yang, Qingsong Wang, Zhanlong Song, Xueliang Yuan, Wenlong Wang, Yanpeng Mao, and Jing Sun
- Subjects
Limonene ,Materials science ,Waste management ,020209 energy ,Mechanical Engineering ,Microwave pyrolysis ,Scrap ,02 engineering and technology ,Building and Construction ,Pulp and paper industry ,Pollution ,Industrial and Manufacturing Engineering ,chemistry.chemical_compound ,General Energy ,chemistry ,Pyrolysis oil ,0202 electrical engineering, electronic engineering, information engineering ,Particle size ,Electrical and Electronic Engineering ,Limonene formation ,Pyrolysis ,Civil and Structural Engineering ,Space velocity - Abstract
Using the test system for the microwave pyrolysis of scrap tires, the effects of different factors on the production characteristics of limonene in oils were investigated. The results showed that the optimum processing parameters for the production of limonene were the specific microwave power of 15 W/g, the weight hourly space velocity of 3.75 h−1, the tire particle size of 0.6 mm, and the absence of steel wires. The yield of limonene in the pyrolysis oil under this set of conditions was up to 23.4%. According to the pyrolysis process and the product composition, the mechanism of limonene production under microwave pyrolysis conditions was predicted. The content of limonene in the pyrolysis oil was quantitatively analyzed by an external standard method (ESM) and the peak area normalization method (PANM) separately. The numerical values of the test results obtained by multiplying PANM by the calibration factor of 1.5 equal the corresponding results obtained using the ESM method. Compared with conventional pyrolysis, the microwave pyrolysis of waste tires has a higher yield of limonene under optimized conditions. The results provide an important reference for the high-value utilization of waste tires and the utilization of resources, especially the subsequent production of limonene.
- Published
- 2018
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