39 results on '"Yasemin ÇAĞ"'
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2. In Vitro Efficacy of Ceftazidime-avibactam Against blaOXA-48-producing Klebsiella pneumoniae Isolates
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Yasemin ÇAĞ, Mücahide Esra KOÇOĞLU, Hülya ÇAŞKURLU, Demet HACISEYİTOĞLU, Hasan Cenk MİRZA, Aylin ÜSKÜDAR GÜÇLÜ, Rıza Aytaç ÇETİNKAYA, and Haluk VAHABOĞLU
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blaoxa-48 ,blandm ,ceftazidime-avibactam ,antimicrobial susceptibility ,klebsiella pneumoniae ,Medicine ,Infectious and parasitic diseases ,RC109-216 - Abstract
Introduction: The healthcare burden of carbapenem-resistant Klebsiella pneumoniae (K. pneumoniae) infections is growing. The newly developed beta-lactam/beta-lactamase inhibitor combination, ceftazidime-avibactam, shows promise in the treatment of such infections. We aimed to explore the in vitro efficacy of ceftazidime-avibactam against carbapenem-resistant K. pneumoniae isolates carrying the blaOXA-48 gene. Materials and Methods: The isolates were identified using MALDI-TOF MS (Brucker, USA). The isolates that were non-susceptible to imipenem, meropenem, or ertapenem by the disk diffusion method using the European Committee of Antimicrobial Susceptibility Testing (EUCAST) breakpoints were screenes. Minimum inhibitory concentration (MIC) values were determined via broth microdilution according to the EUCAST criteria. A time-kill study was performed according to Clinical and Laboratory Standards Institute guidelines. Beta-lactamase genes were screened for using polymerase chain reaction with previously published primers. Results: A total of 129 K. pneumoniae isolated between April 2011 and February 2021 were studied. Of these, 98, 23, and eight isolates carried the blaOXA-48, blaNDM, and blaOXA-48 with blaNDM genes, respectively. All isolates carrying the blaNDM gene were resistant to ceftazidime-avibactam. Approximately 79.6% of the blaOXA-48-positive isolates were susceptible to ceftazidime-avibactam. The time-kill study for ceftazidime-avibactam was performed with one blaOXA-48-positive isolate (MIC, 4 mg/l). Ceftazidime-avibactam time-kill kinetics were evaluated in multiples of MIC. There was a decrease of ≥3-log10 in CFU/ml count at a concentration of 8, 16, and 32 MIC at 6 hours. The minimum bactericidal concentration was 8 mg/l. Conclusion: Ceftazidime-avibactam is an important treatment alternative alternative for blaOXA-48 positive carbapenem-resistant K. pneumoniae infections. The most rational approach to the treatment of carbapenem-resistant K. pneumoniae infections appears to be the initiatiion of targeted therapy according to culture antibiogram results or revision of the empirically initiated combination or monotherapy as early as possible according to culture antibiogram results.
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- 2023
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3. Antibiotic use and Influencing Factors Among Hospitalized Patients with COVID-19: A Multicenter Point-Prevalence Study from Turkey
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İrfan Şencan, Yasemin Çağ, Oğuz Karabay, Behice Kurtaran, Ertuğrul Güçlü, Aziz Öğütlü, Zehra Demirbaş, Dilek Bulut, Gülden Eser Karlıdağ, Merve Sefa Sayar, Ezgi Gizem Şibar, Oya Özlem Eren Kutsoylu, Gülnur Kul, Serpil Erol, Begüm Bektaş, Tülay Ünver Ulusoy, Semanur Kuzi, Meltem Tasbakan, Özge Yiğit, Nurgül Ceran, Ayşe Seza İnal, Pınar Ergen, Tansu Yamazhan, Hanife Uzar, and Canan Ağalar
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Medicine - Abstract
Background: Broad-spectrum empirical antimicrobials are frequently prescribed for patients with coronavirus disease 2019 (COVID-19) despite the lack of evidence for bacterial coinfection. Aims: We aimed to cross-sectionally determine the frequency of antibiotics use, type of antibiotics prescribed, and the factors influencing antibiotics use in hospitalized patients with COVID-19 confirmed by polymerase chain reaction. Study Design: The study was a national, multicenter, retrospective, and single-day point prevalence study. Methods: This was a national, multicenter, retrospective, and single-day point-prevalence study, conducted in the 24-h period between 00:00 and 24:00 on November 18, 2020, during the start of the second COVID-19 peak in Turkey. Results: A total of 1500 patients hospitalized with a diagnosis of COVID-19 were included in the study. The mean age ± standard deviation of the patients was 65.0 ± 15.5, and 56.2% (n = 843) of these patients were men. Of these hospitalized patients, 11.9% (n = 178) were undergoing invasive mechanical ventilation or ECMO. It was observed that 1118 (74.5%) patients were receiving antibiotics, of which 416 (37.2%) were prescribed a combination of antibiotics. In total, 71.2% of the patients had neither a clinical diagnosis nor microbiological evidence for prescribing antibiotics. In the multivariate logistic regression analysis, hospitalization in a state hospital (p < 0.001), requiring any supplemental oxygen (p = 0.005), presence of moderate/diffuse lung involvement (p < 0.001), C-reactive protein > 10 ULT coefficient (p < 0.001), lymphocyte count < 800 (p = 0.007), and clinical diagnosis and/or confirmation by culture (p < 0.001) were found to be independent factors associated with increased antibiotic use. Conclusion: The necessity of empirical antibiotics use in patients with COVID-19 should be reconsidered according to their clinical, imaging, and laboratory findings.
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- 2022
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4. Pulmonary Embolism Severity Index and Simplified Pulmonary Embolism Severity Index Risk Scores are Useful to Predict Mortality in Patients with COVID-19
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Gönül Açıksarı, Mehmet Koçak, Yasemin Çağ, Sacit İçten, and Mustafa Çalışkan
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coronavirus ,coronavirus disease-2019 ,pulmonary embolism severity index ,risk stratification. ,Medicine - Abstract
INTRODUCTION: The prognostic assessment tools such as pulmonary embolism severity ındex (PESI) and simplified PESI (sPESI) are used to predict the mortality in patients with acute pulmonary embolism. The aim of this study is to assess PESI and sPESI accuracy for the prediction of the prognostic outcomes in coronavirus disease (COVID). METHODS: This retrospective single-center was done as a cohort study. Data on hospital admission obtained from medical records were used to calculate PESI and sPESI. All the consecutive patients were assigned to low risk and high-risk groups using of PESI and sPESI. The primary outcome was hospital mortality. Accuracy of the models was assessed to predict mortality by calculating specificity, predictive values, and sensitivity of the patients at low to high risk. The area under receiver operating characteristic (ROC) was calculated to compare the discriminative power of the models. RESULTS: The PESI and sPESI had similar sensitivities (82.1% vs. 84.6%), negative predictive values (96.7% vs. 97%) for predicting mortality. The area under the ROC curve for predicting mortality was 0.82 (p
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- 2022
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5. Diagnosis, treatment and prevention of infective endocarditis: Turkish consensus report-2019
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Serap Şimşek-Yavuz, Ahmet Rüçhan Akar, Sinan Aydoğdu, Denef Berzeg Deniz, Hakan Demir, Tuncay Hazırolan, Mehmet Ali Ozatik, Necla Özer, Murat Sargın, Nursen Topçuoğlu, Nesrin Turhan, Mehmet Birhan Yılmaz, Özlem Azap, Seniha Başaran, Yasemin Çağ, Arif Atahan Çağatay, Güle Çınar Aydın, Sibel Doğan Kaya, Lokman Hızmalı, and Mehmet Emirhan Işık
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consensus report ,infective endocarditis. ,Medicine ,Internal medicine ,RC31-1245 ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Published
- 2020
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6. The Perspectives of Infectious Diseases and Clinical Microbiology Specialists on Online Education Applications and Web-based Seminars
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Türkkan ÖZTÜRK KAYGUSUZ, Canan AĞALAR, Behice KURTARAN, Yasemin ÇAĞ, and Meltem TAŞBAKAN
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covid-19 ,webinar ,web-based conferencing ,online medical education ,medical education ,Medicine ,Infectious and parasitic diseases ,RC109-216 - Abstract
Introduction: In this study, it was aimed to obtain information about the perspectives of infectious diseases and clinical microbiology (IDCM) specialists on online education applications and web-based seminars, and their usage and utilization rates. Materials and Methods: In this descriptive, cross-sectional study, online survey responses of the IDCM specialists in who were members of Infectious Diseases Clinical Microbiology Specialty Society of Turkey (EKMUD) were evaluated. Results: A total of 184 IDCM specialists answered the survey questions. Of the participants, 77.2% thought that the pandemic disrupted post-graduate medical education and 84.8% thought that the pandemic disrupted pre-graduate medical education. Medical educators involved in education during the Coronavirus disease-2019 (COVID-19) pandemic reported that they mostly continued online education. Of the participants, 84.9% reported that they were able to use the internet in an effective way to gain access to information during the COVID-19 pandemic. Of the responders, 58.2% reported that they followed online training programs, such as web-based seminars and lectures, and 51.6% reported that these online programs contributed to their learning. Participants found online training programs such as web-based seminars and lectures useful in terms of learning competence, that online training programs provided people with gain in space and time, and that they found them more instructive because they gave them the chance to receive training in subjects of their interest. Participants reported that these programs provided learning competency in that these programs were more beneficial to the participants in view of place, the subject that they need/they are interested in and saving time for the trainer and the participants. Due to the COVID-19 pandemic, the participants mostly wanted the 2020 EKMUD congress to be held online. A total 92.9% of the participants reported that online congresses and seminars would decrease travel, participation and sponsorship costs. Only 24.5% of the participants considered that online congresses and seminars would be more effective in terms of social interaction and gaining information than face-to-face congresses. Conclusion: The IDCM specialists reported that online educational practices such as webinars were benefical. The rate of participation in webinars and online education practices were high during the COVID-19 pandemic.
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- 2021
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7. The effect of colistin resistance and other predictors on fatality among patients with bloodstream infections due to Klebsiella pneumoniae in an OXA-48 dominant region
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Şirin Menekşe, Yasemin Çağ, Mehmet Emirhan Işık, Suzan Şahin, Demet Hacıseyitoğlu, Fusun Can, and Onder Ergonul
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Infectious and parasitic diseases ,RC109-216 - Abstract
Background: The aim of this study was to determine the effect of colistin resistance and other predictors on fatality among patients with Klebsiella pneumoniae bloodstream infections (Kp-BSI) and to describe the effect of amikacin and tigecycline on the outcome in an OXA-48 dominant country. Method: This was a retrospective study performed among patients >16 years of age in a tertiary hospital with 465 beds. All cases had ≥1 positive blood culture for K. pneumoniae 48 h after admission. Results: Among 210 patients with Kp-BSI, the 30-day mortality rate after isolation of the microorganism was 58%. The rate of carbapenem resistance was higher (64% vs. 38%, p
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- 2019
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8. Prognostic Value of Inflammatory Biomarkers in Patients with Severe COVID-19: A Single-Center Retrospective Study
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Gönül Açıksarı, Mehmet Koçak, Yasemin Çağ, Lütfiye Nilsun Altunal, Adem Atıcı, Fatma Betül Çelik, Furkan Bölen, Kurtuluş Açıksarı, and Mustafa Çalışkan
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Medicine (General) ,R5-920 - Abstract
Background: The current knowledge about novel coronavirus-2019 (COVID-19) indicates that the immune system and inflammatory response play a crucial role in the severity and prognosis of the disease. In this study, we aimed to investigate prognostic value of systemic inflammatory biomarkers including C-reactive protein/albumin ratio (CAR), prognostic nutritional index (PNI), neutrophil-to-lymphocyte ratio (NLR), lymphocyte-to-monocyte ratio (LMR), and platelet-to-lymphocyte ratio (PLR) in patients with severe COVID-19. Methods: This single-center, retrospective study included a total of 223 patients diagnosed with severe COVID-19. Primary outcome measure was mortality during hospitalization. Multivariate logistic regression analyses were performed to identify independent predictors associated with mortality in patients with severe COVID-19. Receiver operating characteristic (ROC) curve was used to determine cut-offs, and area under the curve (AUC) values were used to demonstrate discriminative ability of biomarkers. Results: Compared to survivors of severe COVID-19, non-survivors had higher CAR, NLR, and PLR, and lower LMR and lower PNI ( P < .05 for all). The optimal CAR, PNI, NLR, PLR, and LMR cut-off values for detecting prognosis were 3.4, 40.2, 6. 27, 312, and 1.54 respectively. The AUC values of CAR, PNI, NLR, PLR, and LMR for predicting hospital mortality in patients with severe COVID-19 were 0.81, 0.91, 0.85, 0.63, and 0.65, respectively. In ROC analysis, comparative discriminative ability of CAR, PNI, and NLR for hospital mortality were superior to PLR and LMR. Multivariate analysis revealed that CAR (⩾0.34, P = .004), NLR (⩾6.27, P = .012), and PNI (⩽40.2, P = .009) were independent predictors associated with mortality in severe COVID-19 patients. Conclusions: The CAR, PNI, and NLR are independent predictors of mortality in hospitalized severe COVID-19 patients and are more closely associated with prognosis than PLR or LMR.
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- 2021
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9. Problems in Infectious Diseases and Clinical Microbiology Residency Training
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Damla AKDAĞ, Hüseyin Aytaç ERDEM, Yasemin ÇAĞ, Canan AĞALAR, and Meltem IŞIKGÖZ TAŞBAKAN
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medical specialty education ,medical residency training ,residents ,specialist in medicine ,infectious diseases and clinical microbiology ,Medicine ,Infectious and parasitic diseases ,RC109-216 - Abstract
Introduction: In this study, it was aimed to determine the problems encountered by Infectious Diseases and Clinical Microbiology residents during residency training in order to identify solutions to these difficulties. Materials and Methods: A survey was conducted between December 19 and 31, 2018 using a 46-item questionnaire. Participants were able to participate in the survey anonymously via the website of the Infectious Diseases and Clinical Microbiology Specialty Society of Turkey. Residents were informed via text message and e-mail to encourage participation. The survey included questions about current problems with the physical conditions, access to scientific information resources, the quality of residency education, examinations, night shifts, mobbing, rotations, and the possibility of following up special patient subgroups. Results: A total of 134 residents completed the questionnaire, 73 of whom were in university educational hospitals and 61 were in training and research hospitals operating under the Ministry of Health. Around 68% of the participants stated that they were working in unsuitable physical conditions and 33% had no access to medical information resources outside of the hospital. Ninety-four participants (61%) declared that their clinic had a regular training program which was renewed annually, but only 36% of these asserted that it was adequate for their training. When asked about the frequency of coworking with faculty members for scientific data/study production, 46% of the respondents answered once a year or less. Fifty-nine participants (44%) had seven or more night shifts per month. Thirty-six percent of the participants reported that they were subject to workplace bullying, which they said was perpetrated most frequently by faculty members (36%). Only 22 participants (16%) considered the microbiology training was adequate and 15% rated the training received during rotations as adequate. Thirty-three of the residents had performed a liver biopsy or been trained in this procedure. Fifty-five participants (46%) had never worked at a vaccine outpatient clinic. According to the trainees, the most important problem was inadequate education (28%) and 55% declared that they would not choose the same specialty if they entered the national medical specialty exam again. Conclusion: Residents describe many problems during their specialty training, such as inadequate education, excessive night shifts, increased workload, and workplace bullying. These problems should be presented more frequently with valid scientific data within the professional societies, and in light of this information, physician working groups should be formed to develop solutions.
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- 2020
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10. Current Diagnosis and Treatment Approach to Sepsis
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Aynur AKIN, Emine ALP, Mustafa ALTINDİŞ, Emel AZAK, Ayşe BATIREL, Yasemin ÇAĞ, Gül DURMUŞ, Esma KEPENEK KURT, Pınar SAĞIROĞLU, Zeynep TÜRE, Aslıhan CANDEVİR ULU, and EKMUD Sepsis Working Group
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Sepsis ,diagnosis ,treatment ,new antibiotics ,multidrug resistance ,Medicine ,Infectious and parasitic diseases ,RC109-216 - Abstract
Sepsis is a major healthcare problem worldwide. Its mortality and morbidity is still high. Early diagnosis of sepsis and appropriate management in the initial hours improve outcomes. The Surviving Sepsis Campaign published new definitions for sepsis in 2016. In Sepsis-3 definitions, sepsis is defined as life-threatening organ dysfunction caused by a dysregulated host response to infection. Organ dysfunction can be identified as an acute change in total SOFA score of at least two points consequent to the infection. However, this definition is endorsed by two international societies and there is much discussion regarding new definitions. Prospective validation of this definition on different levels is needed. The infectious source in sepsis depends on patients" underlying diseases and origin of the infection (community-acquired or healthcare-associated). In the literature, urinary tract and skin-soft tissue infection are the common sites in community-acquired sepsis, whereas respiratory system and intraabdominal infections are more common in nosocomial sepsis. Another challenge in sepsis management is the increasing incidence of sepsis due to multidrugresistant bacteria and limited treatment options. New antibiotics may be treatment options in the future. In this review, current definitions of sepsis, physiopathology of sepsis, foci of sepsis and causative microorganisms, microbiological diagnosis and rapid diagnosis methods, biomarkers used in the diagnosis of sepsis, antimicrobial treatment and resistance, new antibiotics and non-antibiotic therapy are discussed.
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- 2018
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11. Adaptive immune system in severe COVID-19 patients in the first week of illness: A pilot study
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Fadime Ersoy Dursun, Yasemin Çağ, Ender İğneci, Burcu Işık Gören, Ferhat Arslan, Tülin Akarsu Ayazoğlu, Ferruh Kemal İşman, and Mustafa Haluk Vahaboğlu
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IntroductionThe presentation of the course of COVID-19-related T-cell responses in the first week of the disease may be a more specific period for adaptive immune response assessment. This study aimed to clarify the relationship between changes in peripheral blood lymphocyte counts and death in patients with COVID-19 pneumonia.MethodsThirty-three patients (14 females and 19 males) admitted for severe and desaturated COVID-19 pneumonia confirmed by polymerase chain reaction were included. Lymphocyte subsets and CD4+/CD8+ and CD16+/CD56+ rates were measured using flow cytometry from peripheral blood at admission and on the day of death or hospital discharge.ResultsTwenty-eight patients survived and five died. On the day of admission, the CD4+ cell count was significantly higher and the saturation of O2 was significantly lower in the deceased patients compared to the survivors (P < 0.05). The CD16+/CD56+ rate was significantly lower on the day of death in the deceased patients than in discharge day for the survivors (P = 0.013).ConclusionCD4+ lymphocyte percentages and O2 saturation in samples taken on the day of admission to the hospital and CD16+/CD56+ ratios taken at the time of discharge from the hospital were found to be associated with the mortality in patients with severe COVID-19.
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- 2023
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12. The Direct Medical Cost of Regular Monitoring of Patients with HBeAg-Negative Chronic Hepatitis B Virus Infection
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Ahmet Naci Emecen, Hülya Çaşkurlu, Pınar Ergen, Yasemin Çağ, Ferhat Arslan, and Haluk Vahaboğlu
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General Engineering ,General Earth and Planetary Sciences ,General Environmental Science - Abstract
Objectives: Patients with hepatitis B e antigen-negative chronic infection (inactive carriers) account for most of the people living with hepatitis B virus (HBV). This study investigated the direct medical cost of monitoring patients within this group.Materials and Methods: A total of 293 outpatients receiving regular monitoring in a large university hospital were included in the study. Direct medical costs included laboratory tests, imaging, liver biopsies and co-payments. Linear mixed effect models were applied to investigate the effect of follow-up time on the annual cost of monitoring. We made quarterly, semi-annual and annual monitoring cost trajectories in accordance with international guideline recommendations.Results: The average annual direct medical cost per patient was 160 USD and the average laboratory visit cost per patient was 68.5 USD. HBV DNA testing contributed to a majority percentage of the total cost (59.6%). As follow-up time increased, the total annual cost (beta=-2.07) and annual cost for DNA testing (beta=-1.03) decreased. The cost trajectory of the first two years of monitoring remained above the semi-annual follow-up strategy. After three years, the cost trajectory of monitoring, while reducing slightly, remained between the semi-annual and annual follow-up strategy trend lines. Conclusion: Due to high-patient numbers, the total cost of monitoring presents a large economic burden. Taking into consideration the generally benign nature of the disease; the length of intervals between outpatient hospital visits could be reviewed and alternative strategies implemented with the aim of reducing expenditure.
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- 2022
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13. The evaluation of risk factors related to reduced bone mineral density in young people living with HIV
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Özlem Aydın, Handan Ankaralı, Pınar Ergen, Naciye Betül Baysal, and Yasemin Çağ
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HIV infection ,bone density ,antiretroviral therapy ,General Medicine - Abstract
Background: Low bone mineral density (BMD) is one of the comorbidities that develop in people living with HIV (PLWHIV). Objective: This study was conducted to review the frequency and risk factors of reduced BMD according to age in HIV-infected patients in Turkey. Material and Method: This retrospective cohort study included HIV-infected patients aged 18-50. Bone density was analysed using dual-energy X-ray absorptiometry (DXA) according to the Z-score in three different regions including the lumbar, total-hip and femoral-neck. Results: The study included 224 PLWHIV with a mean age of 35.84-7.54, and 59.8% were ART naive. Of the patients, 40.6% had lower BMD than expected at least in one of the three examined regions including the lumbar, total hip and femoral neck. The low BMD ratios were found respectively as 11.6%, 11.6% and 28.6% in the femoral neck, total hip and lumbar regions. According to the logistic regression model, a high body mass index (p=0.003) and HIV-RNA level of ≥100.000IU/ml during the diagnosis in the ART-naive group (p=0.008) were associated with reduced bone demineralization. The low BMD frequency was high in the group that received ART for
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- 2022
14. Carbapenem-resistant
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Pınar, Ergen, M Esra, Koçoğlu, Müge, Nural, Mert Ahmet, Kuşkucu, Özlem, Aydin, Ferda Y, İnal, Hande, Öztürk, Ayşe C, Üçişik, Hülya, Çaşkurlu, Büşra, Güneysu, Büşra, Yildirim, Kenan, Midilli, Yasemin, Çağ, Ferhat, Arslan, and Haluk, Vahaboglu
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Klebsiella pneumoniae ,Intensive Care Units ,Carbapenem-Resistant Enterobacteriaceae ,Carbapenems ,Case-Control Studies ,Drug Resistance, Bacterial ,Humans ,COVID-19 ,Klebsiella Infections ,Retrospective Studies ,Anti-Bacterial Agents ,Disease Outbreaks - Abstract
We analysed a carbapenem-resistant
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- 2022
15. Tracking the circulating SARS-CoV-2 variants in Turkey: Complete genome sequencing and molecular characterization of 1000 SARS-CoV-2 samples
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Faruk Berat Akçeşme, Tuğba Kul Köprülü, Burçin Erkal, Şeyma İş, Birsen Cevher Keskin, Betül Akçeşme, Kürşad Nuri Baydili, Bahar Gezer, Jülide Balkan, Bihter Uçar, Osman Gürsoy, Mehmet Taha Yıldız, Halil Kurt, Nevzat Ünal, Mustafa Altındiş, Celalettin Korkmaz, Hasan Türkez, Özlem Bayraktar, Barış Demirkol, Yasemin Çağ, Melih Akay Arslan, Hilal Abakay, Şükran Köse, Abdülkadir Özel, Neslihan Mutluay, and Şaban Tekin
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viruses - Abstract
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is a highly transmissible coronavirus and has caused a pandemic of acute respiratory disease, named ‘coronavirus disease 2019’ (COVID-19). COVID-19 has a deep impact on public health as one of the most serious pandemics in the last century. Tracking SARS-CoV-2 is important for monitoring and assessing its evolution. This is only possible by detecting all mutations in the viral genome through genomic sequencing. Moreover, accurate detection of SARS-CoV-2 and tracking its mutations is also required for its correct diagnosis. Potential effects of mutations on the prognosis of the disease can be observed. Assignment of epidemiological lineages in an emerging pandemic requires efforts. To address this, we collected 1000 SARS-CoV-2 samples from different geographical regions in Turkey and analyze their genome comprehensively. To track the virus across Turkey we focus on 10 distinct cities in different geographic regions. Each SARS-CoV-2 genome was analyzed and named according to the nomenclature system of Nextclade and Pangolin Lineage. Furthermore, the frequency of the variations observed in 10 months was also determined by region. In this way, we have observed how the virus mutations and what kind of transmission mechanism it has. The effects of age and disease severity on lineage distribution were other considered parameters. The temporal rates of SARS-CoV-2 variants by time in Turkey were close to the global trend. This study is one of the most comprehensive whole genome analyses of SARS-CoV-2 that represents a general picture of the distribution of SARS-CoV-2 variations in Turkey in 2021.Author SummarySince the outbreak of the COVID-19 pandemic in 2019, the viral genome of SARS-CoV-2 was analysed intensively all over the world both to detect its zoonotic origin and the emerging variants worldwide together with the variants’ effect on the prognosis and treatment, respectively, of the infection. Remarkable COVID-19 studies were also made in Turkey as it was in the rest of the world. To date, indeed, almost all studies on COVID-19 in Turkey either sequenced only a small number of the viral genome or analysed the viral genome which was obtained from online databases. In respect thereof, our study constitutes a milestone regarding both the huge sample size consisting of 1000 viral genomes and the widespread geographic origin of the viral genome samples. Our study provides new insights both into the SARS-CoV-2 landscape of Turkey and the transmission of the emerging viral pathogen and its interaction with its vertebrate host.
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- 2022
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16. Carbapenem-resistant Klebsiella pneumoniae outbreak in a COVID-19 intensive care unit; a case-control study
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Pınar Ergen, M. Esra Koçoğlu, Müge Nural, Mert Ahmet Kuşkucu, Özlem Aydin, Ferda Y. İnal, Hande Öztürk, Ayşe C. Üçişik, Hülya Çaşkurlu, Büşra Güneysu, Büşra Yildirim, Kenan Midilli, Yasemin Çağ, Ferhat Arslan, and Haluk Vahaboglu
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Pharmacology ,Infectious Diseases ,Oncology ,Pharmacology (medical) - Abstract
We analysed a carbapenem-resistant Klebsiella pneumoniae (CRKP) outbreak in the coronavirus disease (COVID) ICU. We retrospectively collected data from ICU records. We identified 25 cases between 12 November 2020 and 19 December 2020, and compared them to 42 controls present in the ICU during the same period. The presence of a femoral haemodialysis catheter was strongly associated with invasive CRKP infections (cases, 9 [36%]; controls, 0 [0%]; odds ratio [OR] 95% confidence intervals [CIs], 21 (5; 89)). We found a significant association between old age and CRKP infection with adverse outcomes. Sequence analysis revealed three distinct carbapenemase genes: blaNDM-1, blaOXA-48 and blaKPC-2. We launched rectal swab sampling upon admission to the ICU, cohorted colonized patients and cases and conducted an intensive training programme for newly employed staff. This study revealed that the emergence and dissemination of CRKP in COVID ICUs were associated with increased adverse outcomes. The presence of a femoral haemodialysis catheter was a significant risk factor for CRKP infections.
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- 2022
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17. Identifying risk factors for blood culture negative infective endocarditis: An international ID-IRI study
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Mine Filiz, Hakan Erdem, Handan Ankarali, Edmond Puca, Yvon Ruch, Lurdes Santos, Teresa Fasciana, Anna M. Giammanco, Nesrin Ghanem-Zoubi, Xavier Argemi, Yves Hansmann, Rahmet Guner, Gilda Tonziello, Jean-Philippe Mazzucotelli, Najada Como, Sukran Kose, Ayse Batirel, Asuman Inan, Necla Tulek, Abdullah Umut Pekok, Ejaz Ahmed Khan, Atilla Iyisoy, Meliha Meric-Koc, Ayse Kaya-Kalem, Pedro Palma Martins, Imran Hasanoglu, André Silva-Pinto, Nefise Oztoprak, Raquel Duro, Fahad Almajid, Mustafa Dogan, Nicolas Dauby, Jesper Damsgaard Gunst, Recep Tekin, Deborah Konopnicki, Nicola Petrosillo, Ilkay Bozkurt, Jamal Wadi Al Ramahi, Corneliu Popescu, Ilker Inanc Balkan, Safak Ozer-Balin, Tatjana Lejko Zupanc, Antonio Cascio, Irina Magdalena Dumitru, Aysegul Erdem, Gulden Ersoz, Meltem Tasbakan, Oday Abu Ajamieh, Fatma Sirmatel, Simin Florescu, Serda Gulsun, Hacer Deniz Ozkaya, Sema Sari, Selma Tosun, Meltem Avci, Yasemin Cag, Guven Celebi, Ayse Sagmak-Tartar, Sumeyra Karakus, Alper Sener, Arjeta Dedej, Serkan Oncu, Rosa Fontana Del Vecchio, Derya Ozturk-Engin, and Canan Agalar
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Infective endocarditis ,Blood culture negative endocarditis ,Rheumatic heart disease ,Prosthetic valves ,Cardiac disorders ,Infectious and parasitic diseases ,RC109-216 - Abstract
Background: Blood culture-negative endocarditis (BCNE) is a diagnostic challenge, therefore our objective was to pinpoint high-risk cohorts for BCNE. Methods: The study included adult patients with definite endocarditis. Data were collected via the Infectious Diseases International Research Initiative (ID-IRI). The study analysing one of the largest case series ever reported was conducted across 41 centers in 13 countries. We analysed the database to determine the predictors of BCNE using univariate and logistic regression analyses. Results: Blood cultures were negative in 101 (11.65 %) of 867 patients. We disclosed that as patients age, the likelihood of a negative blood culture significantly decreases (OR 0.975, 95 % CI 0.963–0.987, p
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- 2024
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18. Sociodemographic and Clinical Features of COVID-19 Reinfection Cases Among Healthcare Workers in Turkey
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Yasemin Çağ, Yusuf Taşçı, Hatice Ikiişik, Mehmet Akif Sezerol, Işıl Maral, Çağrı Emin Şahin, and Aral Sürmeli
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medicine.medical_specialty ,Coronavirus disease 2019 (COVID-19) ,business.industry ,Family medicine ,Health care ,medicine ,business - Abstract
Background: Global pandemic of novel Coronavirus Disease (SARS- COV-2) has spread across all continents and infected almost 80 million people. Since it is a novel disease, unknowns about the disease characteristic, treatment and length of immunity still persist. This study aims to characterize reinfection, personal protective equipment use and disease progress in healthcare workers in İstanbul. Methods: 23 healthcare workers who had confirmed negative PCR results after infection and another positivity later were questioned about both infection progress, their symptoms and treatment through an online questionnaire. Results: While the symptoms during both courses did not change drastically, 73.9% were treated as outpatient during the first infection while all but one (95.7%) were treated as such during second time around. Median time between two infections were 106 days. All participants were cleared of disease and none had to be treated in intensive care unit. Conclusion: Use of personal protective equipment was found subpar compared to World Health Organization recommendations. This is the first study from Turkey characterizing reinfected cases in healthcare workers.
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- 2021
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19. Infectious causes of fever of unknown origin in developing countries: An international ID-IRI study
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Hakan Erdem, Jaffar A. Al-Tawfiq, Maha Abid, Wissal Ben Yahia, George Akafity, Manar Ezzelarab Ramadan, Fatma Amer, Amani El-Kholy, Atousa Hakamifard, Bilal Ahmad Rahimi, Farouq Dayyab, Hulya Caskurlu, Reham Khedr, Muhammad Tahir, Lysien Zambrano, Mumtaz Ali Khan, Aun Raza, Nagwa Mostafa El-Sayed, Magdalena Baymakova, Aysun Yalci, Yasemin Cag, Umran Elbahr, and Aamer Ikram
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Developing countries ,Fever of unknown origin ,Infection ,Medical emergencies. Critical care. Intensive care. First aid ,RC86-88.9 - Abstract
Background: Fever of unknown origin (FUO) in developing countries is an important dilemma and further research is needed to elucidate the infectious causes of FUO. Methods: A multi-center study for infectious causes of FUO in lower middle-income countries (LMIC) and low-income countries (LIC) was conducted between January 1, 2018 and January 1, 2023. In total, 15 participating centers from seven different countries provided the data, which were collected through the Infectious Diseases-International Research Initiative platform. Only adult patients with confirmed infection as the cause of FUO were included in the study. The severity parameters were quick Sequential Organ Failure Assessment (qSOFA) ≥2, intensive care unit (ICU) admission, vasopressor use, and invasive mechanical ventilation (IMV). Results: A total of 160 patients with infectious FUO were included in the study. Overall, 148 (92.5%) patients had community-acquired infections and 12 (7.5%) had hospital-acquired infections. The most common infectious syndromes were tuberculosis (TB) (n=27, 16.9%), infective endocarditis (n=25, 15.6%), malaria (n=21, 13.1%), brucellosis (n=15, 9.4%), and typhoid fever (n=9, 5.6%). Plasmodium falciparum, Mycobacterium tuberculosis, Brucellae, Staphylococcus aureus, Salmonella typhi, and Rickettsiae were the leading infectious agents in this study. A total of 56 (35.0%) cases had invasive procedures for diagnosis. The mean qSOFA score was 0.76±0.94 {median (interquartile range [IQR]): 0 (0–1)}. ICU admission (n=26, 16.2%), vasopressor use (n=14, 8.8%), and IMV (n=10, 6.3%) were not rare. Overall, 38 (23.8%) patients had at least one of the severity parameters. The mortality rate was 15 (9.4%), and the mortality was attributable to the infection causing FUO in 12 (7.5%) patients. Conclusions: In LMIC and LIC, tuberculosis and cardiac infections were the most severe and the leading infections causing FUO.
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- 2024
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20. Infectious Diseases and Clinical Microbiology Residency Training Problems
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Hüseyin Aytaç Erdem, Meltem Taşbakan, Damla Akdağ, Yasemin Çağ, and Canan Agalar
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Microbiology (medical) ,medicine.medical_specialty ,Clinical microbiology ,Infectious Diseases ,General Immunology and Microbiology ,business.industry ,Family medicine ,medicine ,business ,Residency training - Published
- 2020
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21. An outbreak of candidemia due to Candida parapsilosis in an adult intensive care unit
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Demet, Haciseyitoğlu and Yasemin, Çağ
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Adult ,Aged, 80 and over ,Male ,Cross Infection ,Candida parapsilosis ,Candidiasis ,Candidemia ,Middle Aged ,Disease Outbreaks ,Intensive Care Units ,Young Adult ,Humans ,Female ,Aged ,Retrospective Studies - Abstract
Candida spp. is one of the most common causes of nosocomial bloodstream infections, and Candida parapsilosis is an emerging pathogen that is associated with nosocomial outbreaks. We aimed to characterize an outbreak of candidemia due to C. parapsilosis in our hospital's adult intensive care unit to investigate the clonal relationship of isolates. This is a retrospective study designed to investigate an outbreak of C. parapsilosis bloodstream infections (BSIs) which developed during an 11-week period from July to October 2012. Thirteen outbreak isolates and five isolates from the previous five sporadic cases were included in the study. Identification and antifungal susceptibilities of the isolates were determined by using MALDI-TOF MS (VITEK MS, bioMérieux, France) and by Etest (bioMérieux, France) on RPMI 1640-2% glucose agar (bioMérieux, France) at the Clinical Microbiology Laboratory. Clonal relationships were investigated by repetitive sequence-based PCR (rep-PCR) (DiversiLab, bioMérieux, Marcy L'Étoile, France). The mean age of the cases, seven of which were female, was 61 years. The mean Candida score was 3, the mean length of stay in the intensive care unit (ICU) before infection developed was 33 days. A microbiological cure was obtained in nine (69.2%) patients with appropriate antifungals and catheter removal. Six patients died in a mean of 24 days. All of these isolates were obtained from blood culture, three being also obtained from CVC tips culture. Sixteen isolates were C. parapsilosis, and two isolates were C. orthopsilosis. All of the isolates were susceptible to amphotericin B, voriconazole, and caspofungin. Three isolates were resistant to fluconazole, and two isolates were dose-dependent susceptible to fluconazole. Out of the 13 outbreak isolates and five previous isolates, 11 and three, respectively, showed the same rep-PCR genotypic profile (genotype 1). Two isolates were the second same genotypic profile (genotype 2), and two isolates were the third same genotypic profile (genotype 3). The outbreak was under control in 11 weeks. The sporadic cases occurred in a subsequent three-month period. Our study shows that if C. parapsilosis isolates are present in a unit, it can become colonized in the unit and can spread clonally and rapidly, being able to cause a nosocomial outbreak. Moreover, even one isolate of C. parapsilosis in a unit can trigger an outbreak. Molecular typing methods are essential in order to illustrate the epidemiology of hospital outbreaks. Early detection of outbreaks is crucial for the implementation of infection control measures such as disinfection and isolation.
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- 2019
22. Current Diagnosis and Treatment Approach to Sepsis
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Ayse Batirel, Emine Alp, Mustafa Altindiş, Aynur Akin, Esma Kepenek Kurt, Yasemin Çağ, Zeynep Ture, Pinar Sağiroğlu, Gül Durmuş, Emel Azak Karali, Sepsis Çalişma Grubu, and Aslihan Ulu
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Microbiology (medical) ,medicine.medical_specialty ,treatment ,General Immunology and Microbiology ,diagnosis ,business.industry ,lcsh:R ,lcsh:Medicine ,new antibiotics ,medicine.disease ,lcsh:Infectious and parasitic diseases ,Sepsis ,Infectious Diseases ,multidrug resistance ,medicine ,lcsh:RC109-216 ,Current (fluid) ,Intensive care medicine ,business - Abstract
Sepsis is a major healthcare problem worldwide. Its mortality and morbidity is still high. Early diagnosis of sepsis and appropriate management in the initial hours improve outcomes. The Surviving Sepsis Campaign published new definitions for sepsis in 2016. In Sepsis-3 definitions, sepsis is defined as life-threatening organ dysfunction caused by a dysregulated host response to infection. Organ dysfunction can be identified as an acute change in total SOFA score of at least two points consequent to the infection. However, this definition is endorsed by two international societies and there is much discussion regarding new definitions. Prospective validation of this definition on different levels is needed. The infectious source in sepsis depends on patients' underlying diseases and origin of the infection (community-acquired or healthcare-associated). In the literature, urinary tract and skin-soft tissue infection are the common sites in community-acquired sepsis, whereas respiratory system and intraabdominal infections are more common in nosocomial sepsis. Another challenge in sepsis management is the increasing incidence of sepsis due to multidrug-resistant bacteria and limited treatment options. New antibiotics may be treatment options in the future. In this review, current definitions of sepsis, physiopathology of sepsis, foci of sepsis and causative microorganisms, microbiological diagnosis and rapid diagnosis methods, biomarkers used in the diagnosis of sepsis, antimicrobial treatment and resistance, new antibiotics and non-antibiotic therapy are discussed.
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- 2017
23. Evaluation of the implementation of WHO infection prevention and control core components in Turkish health care facilities: results from a WHO infection prevention and control assessment framework (IPCAF)—based survey
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Emel Azak, Ahmet Sertcelik, Gulden Ersoz, Guven Celebi, Fatma Eser, Ayse Batirel, Yasemin Cag, Zeynep Ture, Derya Ozturk Engin, Meltem Arzu Yetkin, Sedat Kaygusuz, Aslıhan Candevir, Ermira Tartari, Jordi Rello, Emine Alp, and THIRG, Turkish Hospital Infection Research Group
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Infection prevention and control ,IPC core components ,Health care-associated infections ,Antimicrobial resistance ,Workload ,Infectious and parasitic diseases ,RC109-216 - Abstract
Abstract Background The core components (CCs) of infection prevention and control (IPC) from World Health Organization (WHO) are crucial for the safety and quality of health care. Our objective was to examine the level of implementation of WHO infection prevention and control core components (IPC CC) in a developing country. We also aimed to evaluate health care-associated infections (HAIs) and antimicrobial resistance (AMR) in intensive care units (ICUs) in association with implemented IPC CCs. Methods Members of the Turkish Infectious Diseases and Clinical Microbiology Specialization Association (EKMUD) were invited to the study via e-mail. Volunteer members of any healt care facilities (HCFs) participated in the study. The investigating doctor of each HCF filled out a questionnaire to collect data on IPC implementations, including the Infection Prevention and Control Assessment Framework (IPCAF) and HAIs/AMR in ICUs in 2021. Results A total of 68 HCFs from seven regions in Türkiye and the Turkish Republic of Northern Cyprus participated while 85% of these were tertiary care hospitals. Fifty (73.5%) HCFs had advanced IPC level, whereas 16 (23.5%) of the 68 hospitals had intermediate IPC levels. The hospitals’ median (IQR) IPCAF score was 668.8 (125.0) points. Workload, staffing and occupancy (CC7; median 70 points) and multimodal strategies (CC5; median 75 points) had the lowest scores. The limited number of nurses were the most important problems. Hospitals with a bed capacity of > 1000 beds had higher rates of HAIs. Certified IPC specialists, frequent feedback, and enough nurses reduced HAIs. The most common HAIs were central line-associated blood stream infections. Most HAIs were caused by gram negative bacteria, which have a high AMR. Conclusions Most HCFs had an advanced level of IPC implementation, for which staffing was an important driver. To further improve care quality and ensure everyone has access to safe care, it is a key element to have enough staff, the availability of certified IPC specialists, and frequent feedback. Although there is a significant decrease in HAI rates compared to previous years, HAI rates are still high and AMR is an important problem. Increasing nurses and reducing workload can prevent HAIs and AMR. Nationwide “Antibiotic Stewardship Programme” should be initiated.
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- 2023
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24. Aspergillus Spondylodiscitis and Paravertebral Abscess in an Immunocompetent Patient
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Yasemin ÇAĞ, Öznur AK, Demet HACISEYİTOĞLU, Sedat DALBAYRAK, Aylin EGE GÜL, and Serdar ÖZER
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musculoskeletal diseases ,Aspergillus fumigatus ,Spondylodiscitis ,lcsh:QR1-502 ,lcsh:RC109-216 ,Voriconazole ,skin and connective tissue diseases ,lcsh:Microbiology ,Paravertebral abscess ,lcsh:Infectious and parasitic diseases - Abstract
Although osseous infections associated with Aspergillus species are more common in immunocompromised patients, they may also rarely develop in immunocompetent patients with an intact immune system, who are not predisposed to invasive aspergillus infections. The osseous infection due to Aspergillus most frequently involves the lumbar vertebrae, with low back pain being the most prominent symptom. A. fumigatus is known to be the primary cause in the etiology. Surgical intervention and systemic antifungal therapy should be the mainstay of treatment. In this report, we present a case of spondylodiscitis and paravertebral abscess due to A. fumigatus, which developed in an immunocompetent patient. The treatment included surgery and voriconazole.
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- 2013
25. The Value of Galactomannan Test in the Evaluation of Invasive Aspergillosis in Patients with Prolonged Febrile Neutropenia
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Güler DEMİRHAN DELİBALTA, Serap GENÇER, Yasemin ÇAĞ, and Serdar ÖZER
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carbohydrates (lipids) ,Neutropenia ,Galactomannan ,lcsh:QR1-502 ,lcsh:RC109-216 ,bacterial infections and mycoses ,skin and connective tissue diseases ,Invasive pulmonary aspergillosis ,lcsh:Microbiology ,lcsh:Infectious and parasitic diseases - Abstract
Introduction: Early treatment and prognosis of galactomannan antijenemia is essential in patients with high risk of invasive aspergillosis. This prospective observational study was done to evaluate the effect of galactomannan antigen test on diagnosis and antifungal treatment of febrile neutropenic patients who are still having fever despite wide spectrum antibiotic treatment. Materials and Methods: One hundred and twenty six febrile neutropenic attacks belonging to 109 cases between January 2009 and August 2010 were included to the study. The patients were mostly with hematologic malignancy, and galactomannan tested because of having fever more than five days despite wide spectrum antibiotic treatment. Cases with another fungal infection diagnosis were not included. All cases were evaluated with high resolution computer tomography parallel to galactomannan antigen test. Results: Sixty three (50%) patients were diagnosed with abnormal finding according to high resolution computer tomography, whereas 57 (45%) were galactomannan positive. One proved, two high probabilistic, four probabilistic, totally 7 (6%) cases were diagnosed as invasive aspergillosis according to EORTC/MSG criteria. Galactomannan sensitivitity was low (43%) but negative predictive value was found high (94%). Specificity increased as galactomannan optic density index limit increased. In galactomannan positive cases, neutropenia level (p= 0.001) and antifungal startup ratio were high (p= 0.007), and antifungal treatment period (p= 0.003) were longer. There was no meaningful relation between galactomannan positivity and abnormal finding at high resolution computer tomography for diagnosis (p= 0.371). “Preemptive“ antifungal treatment was started to 63 (50%) of cases, who are prospective candidates for "empiric” antifungal treatment. Conclusion: Although solitary serum galactomannan level sensitivity for invasive aspergillosis diagnosis is low, it has importance as negative predictive value may be high. “Preemptive” treatment based on galactomannan test has decreased antifungal usage to a crucial degree. However, with the evaluation of galactomannan test on more proved invasive aspergillosis cases “preemptive” antifungal description would be made exactly and galactomannan test would be more respected.
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- 2012
26. Self-reported antibiotic stewardship and infection control measures from 57 intensive care units: An international ID-IRI survey
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Rehab El-Sokkary, Hakan Erdem, Ravina Kullar, Abdullah Umut Pekok, Fatma Amer, Svjetlana Grgić, Biljana Carevic, Amani El-Kholy, Anna Liskova, Mehmet Özdemir, Ejaz Ahmed Khan, Yesim Uygun Kizmaz, Nenad Pandak, Nirav Pandya, Jurica Arapović, Rıdvan Karaali, Nefise Oztoprak, Michael M. Petrov, Rami Alabadla, Handan Alay, Jehan Ali El Kholy, Caroline Landelle, Reham Khedr, Dhruv Mamtora, Gorana Dragovac, Ricardo Fernandez, Emine Unal Evren, Lul Raka, Antonio Cascio, Nicolas Dauby, Ahsen Oncul, Safak Ozer Balin, Yasemin Cag, Natalia Dirani, Mustafa Dogan, Irina Magdalena Dumitru, Maha Ali Gad, Ilad Alavi Darazam, Behrouz Naghili, Rosa Fontana Del Vecchio, Monica Licker, Andrea Marino, Nasim Akhtar, Mostafa Kamal, Goffredo Angioni, Deana Medić, Aliye Esmaoğlu, Szabo Balint Gergely, André Silva-Pinto, Lurdes Santos, Ionela Larisa Miftode, Recep Tekin, Phunsup Wongsurakiat, Mumtaz Ali Khan, Yesim Kurekci, Hema Prakash Pilli, Krsto Grozdanovski, Egidia Miftode, Rusmir Baljic, Serhat Uysal, Haluk Vahabolgu, and Jordi Rello
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Multidrug resistance ,Infection control ,Stewardship ,Low- and upper-middle and high income ,MDROs ,Pan drug resistance ,Infectious and parasitic diseases ,RC109-216 ,Public aspects of medicine ,RA1-1270 - Abstract
We explored the self-reported antibiotic stewardship (AS), and infection prevention and control (IPC) activities in intensive care units (ICUs) of different income settings. A cross-sectional study was conducted using an online questionnaire to collect data about IPC and AS measures in participating ICUs. The study participants were Infectious Diseases–International Research Initiative (IDI-IR) members, committed as per their institutional agreement form. We analyzed responses from 57 ICUs in 24 countries (Lower-middle income (LMI), n = 13; Upper-middle income (UMI), n = 33; High-income (HI), n = 11). This represented (~5%) of centers represented in the ID-IRI. Surveillance programs were implemented in (76.9%−90.9%) of ICUs with fewer contact precaution measures in LMI ones (p = 0.02); (LMI:69.2%, UMI:97%, HI:100%). Participation in regional antimicrobial resistance programs was more significantly applied in HI (p = 0.02) (LMI:38.4%,UMI:81.8%,HI:72.2%). AS programs are implemented in 77.2% of institutions with AS champions in 66.7%. Infectious diseases physicians and microbiologists are members of many AS teams (59%&50%) respectively. Unqualified healthcare professionals(42.1%), and deficient incentives(28.1%) are the main barriers to implementing AS. We underscore the existing differences in IPC and AS programs’ implementation, team composition, and faced barriers. Continuous collaboration and sharing best practices on APM is needed. The role of regional and international organizations should be encouraged. Global support for capacity building of healthcare practitioners is warranted.
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- 2022
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27. Features of Mpox infection: The analysis of the data submitted to the ID-IRI network
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Gulden Eser-Karlidag, Enrique Chacon-Cruz, Yasemin Cag, Jose Arturo Martinez-Orozco, Humberto Gudino-Solorio, Raul Adrian Cruz-Flores, Andrea Gonzalez-Rodriguez, Daniela Martinez-Nieves, Mario Gomez-Zepeda, Andrea Calderon-Suarez, Hülya Çaşkurlu, Antonio Cascio, Ricardo Fernandez, Greisha M. Gonzales, Pedro Palma, Corneliu Petru Popescu, Roman Stebel, Botond Lakatos, Eva Nagy, Massimiliano Lanzafame, Amani El-Kholy, Buse Tuncer, Iva Christova, Stefka Krumova, Alexandre Naime Barbosa, Juan Pablo Escalera-Antezana, Ruben Castillo-Quino, Carlos Eduardo Gonzales-Flores, Miriam Moreira-Flores, Marcelo Felipe Batallanos-Huarachi, Christian Gomez-Davila, Rusmir Baljic, Tarsila Vieceli, Olumuyiwa Elijah Ariyo, Mireia Cairo Llobell, Osasona Oluwadamilola Gideon, Augustus Osborne, Umran Elbahr, Philippe Bossi, Antonella Tammaro, Alfonso J. Rodriguez-Morales, and Hakan Erdem
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Mpox ,Outbreak ,Smallpox vaccine ,HIV-Infected mpox ,Infectious and parasitic diseases ,RC109-216 - Abstract
Background: Mpox is a rare zoonotic disease caused by the Mpox virus. On May 21, 2022, WHO announced the emergence of confirmed Mpox cases in countries outside the endemic areas in Central and West Africa. Methods: This multicentre study was performed through the Infectious Diseases International Research Initiative network. Nineteen collaborating centres in 16 countries participated in the study. Consecutive cases with positive Mpoxv-DNA results by the polymerase chain reaction test were included in the study. Results: The mean age of 647 patients included in the study was 34.5.98.6% of cases were males, 95.3% were homosexual-bisexual, and 92.2% had a history of sexual contact. History of smallpox vaccination was present in 3.4% of cases. The median incubation period was 7.0 days. The most common symptoms and signs were rashes in 99.5%, lymphadenopathy in 65.1%, and fever in 54.9%. HIV infection was present in 93.8% of cases, and 17.8% were followed up in the hospital for further treatment. In the two weeks before the rash, prodromal symptoms occurred in 52.8% of cases. The incubation period was 3.5 days shorter in HIV-infected Mpox cases with CD4 count
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- 2023
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28. Antibiotic Resistance Patterns of Escherichia coli and Klebsiella pneumoniae Strains Isolated from Clinical Specimens
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Demet Haciseyitoğlu, Yasemin Çağ, Serdar Özer, and Sedef Başgönül
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Antibiotic resistance ,biology ,Klebsiella pneumoniae ,medicine ,biology.organism_classification ,medicine.disease_cause ,Escherichia coli ,Microbiology - Published
- 2015
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29. The diagnostic utility of the 'Thwaites’ system' and 'lancet consensus scoring system' in tuberculous vs. non-tuberculous subacute and chronic meningitis: multicenter analysis of 395 adult patients
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Tarek Sulaiman, Sai Medi, Hakan Erdem, Seniha Senbayrak, Derya Ozturk-Engin, Asuman Inan, Rok Civljak, Mihai Nechifor, Ayhan Akbulut, Alexandru Crisan, Muge Ozguler, Mustafa Namiduru, Branislava Savic, Olga Dulovic, Filiz Pehlivanoglu, Gonul Sengoz, Kadriye Yasar, Ayse Seza Inal, Emine Parlak, Isik Somuncu Johansen, Ebru Kursun, Mehmet Parlak, Emel Yilmaz, Gulden Yilmaz, Hanefi Cem Gul, Oral Oncul, Soline Siméon, Pierre Tattevin, Aysegul Ulu-Kilic, Selma Alabay, Bojana Beovic, Melanie Catroux, Yves Hansmann, Arjan Harxhi, Alper Sener, Hacer Deniz Ozkaya, Yasemin Cağ, Canan Agalar, Haluk Vahaboglu, Berna Kaya Ugur, and Rodrigo Hasbun
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Tuberculous ,Subacute ,Meningitis ,Thwaites ,Lancet ,Criteria ,Infectious and parasitic diseases ,RC109-216 - Abstract
Abstract Background Tuberculous meningitis (TBM) represents a diagnostic and management challenge to clinicians. The “Thwaites’ system” and “Lancet consensus scoring system” are utilized to differentiate TBM from bacterial meningitis but their utility in subacute and chronic meningitis where TBM is an important consideration is unknown. Methods A multicenter retrospective study of adults with subacute and chronic meningitis, defined by symptoms greater than 5 days and less than 30 days for subacute meningitis (SAM) and greater than 30 days for chronic meningitis (CM). The “Thwaites’ system” and “Lancet consensus scoring system” scores and the diagnostic accuracy by sensitivity, specificity, and area under the curve of receiver operating curve (AUC-ROC) were calculated. The “Thwaites’ system” and “Lancet consensus scoring system” suggest a high probability of TBM with scores ≤4, and with scores of ≥12, respectively. Results A total of 395 patients were identified; 313 (79.2%) had subacute and 82 (20.8%) with chronic meningitis. Patients with chronic meningitis were more likely caused by tuberculosis and had higher rates of HIV infection (P
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- 2020
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30. Could sudden sensorineural hearing loss be the sole manifestation of COVID-19? An investigation into SARS-COV-2 in the etiology of sudden sensorineural hearing loss
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Osman Kilic, Mahmut Tayyar Kalcioglu, Yasemin Cag, Ozan Tuysuz, Emel Pektas, Hulya Caskurlu, and Ferihan Cetın
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COVID-19 ,Sudden sensorineural hearing loss ,Pandemic ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Infectious and parasitic diseases ,RC109-216 - Abstract
Objective: This study aimed to investigate the presence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in patients presenting with only sudden sensorineural hearing loss (SSHNL) during the COVID-19 pandemic. Methods: The study included five male patients who presented with the sole complaint of unilateral SSNHL to the otolaryngology outpatient clinic between 03–12 April 2020. The patients were referred to the infectious diseases clinic to be evaluated for SARS-CoV-2 by real time polymerase chain reaction (RT-PCR) testing. Results: RT-PCR testing for SARS-CoV-2 was positive in one of the patients and negative in the other four patients. A positive response to COVID-19-specific treatment in the SARS-CoV-2 positive SSNHL patient was noted. Conclusion: It should be remembered that non-specific symptoms such as SSNHL could be the only sign with which to recognize a COVID-19 case. Awareness of such a non-specific presentation of COVID-19 patients is crucial during this pandemic period for preventing infectious spread through isolation and early initiation of COVID-19 targeted treatment.
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- 2020
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31. Fabrication and characterization of green synthesized ZnO nanoparticle based dye-sensitized solar cells
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R. Shashanka, Halil Esgin, Volkan Murat Yilmaz, and Yasemin Caglar
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ZnO nanoparticles ,Tilia tomentosa ,Green synthesis ,Dye-sensitized solar cell ,Bandgap ,Materials of engineering and construction. Mechanics of materials ,TA401-492 - Abstract
In the present study, we report on the synthesis of ZnO nanoparticles using Tilia Tomentosa (Ihlamur) leaves extract followed by calcination at 400 °C for 15 min. The prepared ZnO nanoparticles were characterized by XRD and SEM to study the phase and microstructure, respectively. The XRD analysis showed the absence of impurity peaks and the SEM image confirmed the spherical nature of the prepared ZnO nanoparticles with an average particle size of 80 nm. UV-Visible spectroscopy was used to study the optical properties, and the bandgap was calculated to be 3.55 eV. This large bandgap is attributed to the property of the semiconductor, which can be explored for solar cell applications. Therefore, we used green synthesized ZnO nanoparticles to fabricate dye-sensitized solar cells (DSSC). From the J-V curves, we calculated the DSSC parameters such as open-circuit voltage (Voc), short circuit current density (Jsc), fill factor (FF) and efficiency (η), and their values were 0.65 V, 6.26 mA, 48.5%, and 1.97%, respectively, at 100 mW/cm2.
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- 2020
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32. Predictive performance of CT for adverse outcomes among COVID-19 suspected patients: a two-center retrospective study
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Begümhan Baysal, Mahmut Bilal Dogan, Mutlu Gulbay, Mine Sorkun, Murathan Koksal, Aliye Bastug, Sumeyye Kazancioglu, Bahadir Orkun Ozbay, Sacit Icten, Ferhat Arslan, Yasemin Cag, Hurrem Bodur, and Haluk Vahaboglu
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COVID-19 ,pandemic ,SARS virus ,computed tomography ,X-rays ,Biology (General) ,QH301-705.5 - Abstract
The aim of the study was to compare the performance of various computed tomography (CT) reporting tools, including zonal CT visual score (ZCVS), the number of involved lobes, and Radiological Society of North America (RSNA) categorization in predicting adverse outcomes among patients hospitalized due to the lower respiratory symptoms during the coronavirus disease 2019 (COVID-19) pandemic. A total of 405 patients admitted with severe respiratory symptoms who underwent a chest CT were enrolled. The primary adverse outcome was intensive care unit (ICU) admission of patients. Predictive performances of reporting tools were compared using the area under the receiver operating characteristic curves (AUC ROC). Among the 405 patients, 39 (9.63%) required ICU support during their hospital stay. At least two or more observers reported a typical and indeterminate COVID-19 pneumonia CT pattern according to RSNA categorization in 70% (285/405) of patients. Among these, 63% (179/285) had a positive polymerase chain reaction (PCR test for the SARS-CoV-2 virus. The median number of lobes involved according to CT was higher in patients who required ICU support (median interquartile range [IQR], 5[3; 5] vs. 3[0; 5]). The median ZCVS score was higher among the patients that subsequently required ICU support (median [IQR], 4[0; 12] vs. 13[5.75; 24]). The bootstrap comparisons of AUC ROC showed significant differences between reporting tools, and the ZCVS was found to be superior (AUC ROC, 71-75%). The ZCVS score at the first admission showed a linear and significant association with adverse outcomes among patients with the lower respiratory tract symptoms during the COVID-19 pandemic.
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- 2021
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33. Can COVID-19 cause sudden sensorineural hearing loss?
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Mahmut Tayyar Kalcioglu, Yasemin Cag, Osman Kilic, and Ozan Tuysuz
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Infectious and parasitic diseases ,RC109-216 - Published
- 2020
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34. International Multicentre Study of Candida auris Infections
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Nirav Pandya, Yasemin Cag, Nenad Pandak, Abdullah Umut Pekok, Aruna Poojary, Folusakin Ayoade, Teresa Fasciana, Anna Giammanco, Hulya Caskurlu, Dhanji P. Rajani, Yogesh Kumar Gupta, Ilker Inanc Balkan, Ejaz Ahmed Khan, and Hakan Erdem
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Candida ,C. auris ,fungi ,outbreak ,nosocomial ,resistance ,Biology (General) ,QH301-705.5 - Abstract
Background:Candida auris has emerged globally as a multi-drug resistant yeast and is commonly associated with nosocomial outbreaks in ICUs. Methods: We conducted a retrospective observational multicentre study to determine the epidemiology of C. auris infections, its management strategies, patient outcomes, and infection prevention and control practices across 10 centres from five countries. Results: Significant risk factors for C. auris infection include the age group of 61–70 years (39%), recent history of ICU admission (63%), diabetes (63%), renal failure (52%), presence of CVC (91%) and previous history of antibiotic treatment (96%). C. auris was commonly isolated from blood (76%). Echinocandins were the most sensitive drugs. Most common antifungals used for treatment were caspofungin (40%), anidulafungin (28%) and micafungin (15%). The median duration of treatment was 20 days. Source removal was conductedin 74% patients. All-cause crude mortality rate after 30 days was 37%. Antifungal therapy was associated with a reduction in mortality (OR:0.27) and so was source removal (OR:0.74). Contact isolation precautions were followed in 87% patients. Conclusions:C. auris infection carries a high risk for associated mortality. The organism is mainly resistant to most azoles and even amphotericin-B. Targeted antifungal therapy, mainly an echinocandin, and source control are the prominent therapeutic approaches.
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- 2021
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35. Risk factors for infection with colistin-resistant gram-negative microorganisms: a multicenter study
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Gul R. Yilmaz, Murat Dizbay, Tumer Guven, Husnu Pullukcu, Meltem Tasbakan, Ozlem Tunccan Guzel, Yasemin T. Tekce, Mehmet Ozden, Ozge Turhan, Rahmet Guner, Yasemin Cag, Fatma Bozkurt, Fatma Yilmaz Karadag, Elif Doyuk Kartal, Gokhan Gozel, Cemal Bulut, Sebnem Erdinc, Siran Keske, Ziya Cibali Acikgoz, and Mehmet A. Tasyaran
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Medicine - Abstract
BACKGROUND: Knowing risk factors for colistin resistance is important since colistin is the only remaining choice for the treatment of infections caused by multi-drug resistant microorganisms. OBJECTIVE: Evaluate risk factors associated with infection by colistin-resistant microorganisms. DESIGN: Retrospective study. SETTINGS: Tertiary healthcare centers. PATIENTS AND METHODS: An e-mail including the title and purpose of the study was sent to 1500 infectious disease specialists via a scientific and social web portal named “Infeksiyon Dunyasi (Infection World)”. Demographic and clinical data was requested from respondents. MAIN OUTCOME MEASURE(S): Colistin-resistance. RESULTS: Eighteen infectious disease specialists from twelve tertiary care centers responded to the invitation. Data was collected on 165 patients, 56 cases (39.9%) and 109 (66.0%) age- and sex-matched controls. The colistin-resistant microorganisms isolated from cases were 29 Acinetobacter baumannii (51.8%), 18 Pseudomonas aeruginosa (32.1%) and 9 Klebsiella spp. Colistin, carbapenem, and quinolone use in the last three months were risk factors for colistin resistance in the univariate analysis. Previous quinolone use in the last three months (P=.003; RR:3.2; 95% CI:1.5-6,7) and previous colistin use in the last three months (P=.001; RR: 3.6; 95% CI: 1.63-7.99) were significant risk factors in the multivariate analysis. CONCLUSION: Clinicians should limit the use of quinolones and remain aware of the possibility of resistance developing during colistin use. LIMITATIONS: The lack of a heteroresistance analysis on the isolates. No data on use of a loading dose or the use of colistin in combination.
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- 2016
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36. Central nervous system infections in the absence of cerebrospinal fluid pleocytosis
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Hakan Erdem, Derya Ozturk-Engin, Yasemin Cag, Seniha Senbayrak, Asuman Inan, Esra Kazak, Umit Savasci, Nazif Elaldi, Haluk Vahaboglu, and Rodrigo Hasbun
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Infectious and parasitic diseases ,RC109-216 - Abstract
Previous multicenter/multinational studies were evaluated to determine the frequency of the absence of cerebrospinal fluid pleocytosis in patients with central nervous system infections, as well as the clinical impact of this condition. It was found that 18% of neurosyphilis, 7.9% of herpetic meningoencephalitis, 3% of tuberculous meningitis, 1.7% of Brucella meningitis, and 0.2% of pneumococcal meningitis cases did not display cerebrospinal fluid pleocytosis. Most patients were not immunosuppressed. Patients without pleocytosis had a high rate of unfavorable outcomes and thus this condition should not be underestimated. Keywords: CSF, Pleocytosis, Leukocyte, Meningitis, Encephalitis
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- 2017
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37. MixInYeast: A Multicenter Study on Mixed Yeast Infections
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Narda Medina, Juan Carlos Soto-Debrán, Danila Seidel, Isin Akyar, Hamid Badali, Aleksandra Barac, Stéphane Bretagne, Yasemin Cag, Carole Cassagne, Carmen Castro, Arunaloke Chakrabarti, Eric Dannaoui, Celia Cardozo, Julio Garcia-Rodriguez, Juliette Guitard, Petr Hamal, Martin Hoenigl, Tomasz Jagielski, Sadegh Khodavaisy, Giuliana Lo Cascio, María Carmen Martínez-Rubio, Joseph Meletiadis, Patricia Muñoz, Elżbieta Ochman, Teresa Peláez, Ana Perez-Ayala Balzola, Juergen Prattes, Emmanuel Roilides, Maite Ruíz-Pérez de Pipaón, Raphael Stauf, Jörg Steinmann, Ana Isabel Suárez-Barrenechea, Rocío Tejero, Laura Trovato, Lourdes Viñuela, Thanwa Wongsuk, Iwona Żak, Hossein Zarrinfar, Cornelia Lass-Flörl, Sevtap Arikan-Akdagli, Ana Alastruey-Izquierdo, and on behalf of MixInYeast Study Group from EFISG
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yeast ,chrome agar ,invasive candidiasis ,Candida ,mix infections ,polymicrobial infections ,Biology (General) ,QH301-705.5 - Abstract
Invasive candidiasis remains one of the most prevalent systemic mycoses, and several studies have documented the presence of mixed yeast (MY) infections. Here, we describe the epidemiology, clinical, and microbiological characteristics of MY infections causing invasive candidiasis in a multicenter prospective study. Thirty-four centers from 14 countries participated. Samples were collected in each center between April to September 2018, and they were sent to a reference center to confirm identification by sequencing methods and to perform antifungal susceptibility testing, according to the European Committee on Antimicrobial Susceptibility Testing (EUCAST). A total of 6895 yeast cultures were identified and MY occurred in 150 cases (2.2%). Europe accounted for the highest number of centers, with an overall MY rate of 4.2% (118 out of 2840 yeast cultures). Of 122 MY cases, the most frequent combinations were Candida albicans/C. glabrata (42, 34.4%), C. albicans/C. parapsilosis (17, 14%), and C. glabrata/C. tropicalis (8, 6.5%). All Candida isolates were susceptible to amphotericin B, 6.4% were fluconazole-resistant, and two isolates (1.6%) were echinocandin-resistant. Accurate identification of the species involved in MY infections is essential to guide treatment decisions.
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- 2020
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38. Development and validation of a modified quick SOFA scale for risk assessment in sepsis syndrome.
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Yasemin Cag, Oguz Karabay, Oguz Resat Sipahi, Firdevs Aksoy, Gul Durmus, Ayse Batirel, Oznur Ak, Zeliha Kocak-Tufan, Aynur Atilla, Nihal Piskin, Turkay Akbas, Serpil Erol, Derya Ozturk-Engin, Hulya Caskurlu, Ugur Onal, Haluk Erdogan, Aslıhan Demirel, Arzu Dogru, Rezan Harman, Aziz Ahmad Hamidi, Derya Karasu, Fatime Korkmaz, Pınar Korkmaz, Fatma Civelek Eser, Yalcin Onem, Sinem Cesur, Musa Salmanoglu, İlknur Erdem, Hüsrev Diktas, and Haluk Vahaboglu
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Medicine ,Science - Abstract
Sepsis is a severe clinical syndrome owing to its high mortality. Quick Sequential Organ Failure Assessment (qSOFA) score has been proposed for the prediction of fatal outcomes in sepsis syndrome in emergency departments. Due to the low predictive performance of the qSOFA score, we propose a modification to the score by adding age. We conducted a multicenter, retrospective cohort study among regional referral centers from various regions of the country. Participants recruited data of patients admitted to emergency departments and obtained a diagnosis of sepsis syndrome. Crude in-hospital mortality was the primary endpoint. A generalized mixed-effects model with random intercepts produced estimates for adverse outcomes. Model-based recursive partitioning demonstrated the effects and thresholds of significant covariates. Scores were internally validated. The H measure compared performances of scores. A total of 580 patients from 22 centers were included for further analysis. Stages of sepsis, age, time to antibiotics, and administration of carbapenem for empirical treatment were entered the final model. Among these, severe sepsis (OR, 4.40; CIs, 2.35-8.21), septic shock (OR, 8.78; CIs, 4.37-17.66), age (OR, 1.03; CIs, 1.02-1.05) and time to antibiotics (OR, 1.05; CIs, 1.01-1.10) were significantly associated with fatal outcomes. A decision tree demonstrated the thresholds for age. We modified the quick Sequential Organ Failure Assessment (mod-qSOFA) score by adding age (> 50 years old = one point) and compared this to the conventional score. H-measures for qSOFA and mod-qSOFA were found to be 0.11 and 0.14, respectively, whereas AUCs of both scores were 0.64. We propose the use of the modified qSOFA score for early risk assessment among sepsis patients for improved triage and management of this fatal syndrome.
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- 2018
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39. CdZnS ve ZnO YARIİLETKEN FiLMLERİNİN YASAK ENERJİ ARALIKLARI
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SALİHA ILICAN, YASEMİN ÇAĞLAR, and MÜJDAT ÇAĞLAR
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Engineering (General). Civil engineering (General) ,TA1-2040 ,Chemistry ,QD1-999 - Abstract
Il-VI bileşik yarı iletkenleri çeşitli elektro-optik aygıtlardaki uygulamalarından dolayı oldukça önemlidir. Bu filmler çeşitli opto-elektronik aygıtlarda etkin olarak kullanılmaktadırlar. Bu çalışmada, CdZnS ve ZnO filmleri püskürtnıe (spray pyrolysis) yöntemi ile farklı koşullarda elde edilmiştir. Filmierin optik özellikleri incelenmiştir. Bu filmterin yasak enerji aralıkları, 200-900nm dalgaboyu bölgesindeki soğurma spektrumları ile belirlenmiştir. Bu filmler doğrudan bant araliğına sahip olup, yasak enerji aralıkları CdZnS'1 tilıni için 2.90eV, CdZnSb filmi için 2.97e\1 ve Zn O filmi için de 3. lle V olarak bulunnıuştur.Il-VI bileşik yarı iletkenleri çeşitli elektro-optik aygıtlardaki uygulamalarından dolayı oldukça önemlidir. Bu filmler çeşitli opto-elektronik aygıtlarda etkin olarak kullanılmaktadırlar. Bu çalışmada, CdZnS ve ZnO filmleri püskürtnıe (spray pyrolysis) yöntemi ile farklı koşullarda elde edilmiştir. Filmierin optik özellikleri incelenmiştir. Bu filmterin yasak enerji aralıkları, 200-900nm dalgaboyu bölgesindeki soğurma spektrumları ile belirlenmiştir. Bu filmler doğrudan bant araliğına sahip olup, yasak enerji aralıkları CdZnS'1 tilıni için 2.90eV, CdZnSb filmi için 2.97e\1 ve Zn O filmi için de 3. lle V olarak bulunnıuştur.
- Published
- 2005
- Full Text
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