43 results on '"Yide Sun"'
Search Results
2. Can online health information sources really improve patient satisfaction?
- Author
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Yide Sun, Jiajun Yu, Ya-Ling Chiu, and Yuan-Teng Hsu
- Subjects
online information sources ,patient satisfaction ,decision-making ,online healthcare community ,internet information ,Public aspects of medicine ,RA1-1270 - Abstract
Internet information has become the main way for individuals to obtain health information. The purpose of this paper is to explore the role online information sources play in health decision-making. Specifically, we investigated the relationship between online information sources and patient satisfaction, as well as their moderating effects as compared to those of other information sources. Using logistical regression analysis, we conducted the longitudinal data on 54,027 doctors and 952,877 online doctor reviews from 3,525 hospitals in 31 provinces to test a proposed research model. The results showed that patient satisfaction was generally lower for individuals who found a doctor through online information sources. Therefore, we suggest that patients consider the doctor quality, the doctor popularity, and patient involvement. In addition, we found that the doctor popularity had a negative moderating effect between online information sources and patient satisfaction, while patient involvement had a positive moderating effect between online information sources and patient satisfaction. The study provides strategic guidance and practical implications for policies, online healthcare community managers, and patients.
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- 2022
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3. Do Critical Reviews Affect Box Office Revenues Through Community Engagement and User Reviews?
- Author
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Ya-Ling Chiu, Jiangze Du, Yide Sun, and Jying-Nan Wang
- Subjects
critical reviews ,online user reviews ,community engagement ,box office revenues ,electronic word-of-mouth ,Psychology ,BF1-990 - Abstract
With advances in technology and the popularity of the Internet, consumers increasingly rely on various sources of electronic word-of-mouth (eWOM), such as online user reviews and critical reviews, in their decision-making processes. Despite general consensus on the importance of eWOM and the ability of critical reviews to influence product sales, very little is known about the mediation between critical reviews and user reviews. Therefore, we used path analysis to examine how critical reviews and user reviews simultaneously affect box office revenues using eWOM data collected from Metacritic.com and IMDb.com, and box office revenue information collected from BoxOfficeMojo.com. The results showed that critical reviews valence not only directly affects box office revenues but also increases active postings in the community and user reviews volume, thus indirectly leading to greater box office revenues. The study provides strategic guidance and practical implications for eWOM communication management.
- Published
- 2022
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4. Generation and characterization of a bivalent protein boost for future clinical trials: HIV-1 subtypes CR01_AE and B gp120 antigens with a potent adjuvant.
- Author
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Yingxia Wen, Hung V Trinh, Christine E Linton, Chiara Tani, Nathalie Norais, DeeAnn Martinez-Guzman, Priyanka Ramesh, Yide Sun, Frank Situ, Selen Karaca-Griffin, Christopher Hamlin, Sayali Onkar, Sai Tian, Susan Hilt, Padma Malyala, Rushit Lodaya, Ning Li, Gillis Otten, Giuseppe Palladino, Kristian Friedrich, Yukti Aggarwal, Celia LaBranche, Ryan Duffy, Xiaoying Shen, Georgia D Tomaras, David C Montefiori, William Fulp, Raphael Gottardo, Brian Burke, Jeffrey B Ulmer, Susan Zolla-Pazner, Hua-Xin Liao, Barton F Haynes, Nelson L Michael, Jerome H Kim, Mangala Rao, Robert J O'Connell, Andrea Carfi, and Susan W Barnett
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Medicine ,Science - Abstract
The RV144 Phase III clinical trial with ALVAC-HIV prime and AIDSVAX B/E subtypes CRF01_AE (A244) and B (MN) gp120 boost vaccine regime in Thailand provided a foundation for the future development of improved vaccine strategies that may afford protection against the human immunodeficiency virus type 1 (HIV-1). Results from this trial showed that immune responses directed against specific regions V1V2 of the viral envelope (Env) glycoprotein gp120 of HIV-1, were inversely correlated to the risk of HIV-1 infection. Due to the low production of gp120 proteins in CHO cells (2-20 mg/L), cleavage sites in V1V2 loops (A244) and V3 loop (MN) causing heterogeneous antigen products, it was an urgent need to generate CHO cells harboring A244 gp120 with high production yields and an additional, homogenous and uncleaved subtype B gp120 protein to replace MN used in RV144 for the future clinical trials. Here we describe the generation of Chinese Hamster Ovary (CHO) cell lines stably expressing vaccine HIV-1 Env antigens for these purposes: one expressing an HIV-1 subtype CRF01_AE A244 Env gp120 protein (A244.AE) and one expressing an HIV-1 subtype B 6240 Env gp120 protein (6240.B) suitable for possible future manufacturing of Phase I clinical trial materials with cell culture expression levels of over 100 mg/L. The antigenic profiles of the molecules were elucidated by comprehensive approaches including analysis with a panel of well-characterized monoclonal antibodies recognizing critical epitopes using Biacore and ELISA, and glycosylation analysis by mass spectrometry, which confirmed previously identified glycosylation sites and revealed unknown sites of O-linked and N-linked glycosylations at non-consensus motifs. Overall, the vaccines given with MF59 adjuvant induced higher and more rapid antibody (Ab) responses as well as higher Ab avidity than groups given with aluminum hydroxide. Also, bivalent proteins (A244.AE and 6240.B) formulated with MF59 elicited distinct V2-specific Abs to the epitope previously shown to correlate with decreased risk of HIV-1 infection in the RV144 trial. All together, these results provide critical information allowing the consideration of these candidate gp120 proteins for future clinical evaluations in combination with a potent adjuvant.
- Published
- 2018
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5. Immunogens Modeling a Fusion-Intermediate Conformation of gp41 Elicit Antibodies to the Membrane Proximal External Region of the HIV Envelope Glycoprotein.
- Author
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Russell Vassell, Yong He, Prasad Vennakalanti, Antu K Dey, Min Zhuang, Wei Wang, Yide Sun, Zohar Biron-Sorek, Indresh K Srivastava, Celia C LaBranche, David C Montefiori, Susan W Barnett, and Carol D Weiss
- Subjects
Medicine ,Science - Abstract
The membrane proximal external region (MPER) of the gp41 subunit of the HIV-1 envelope glycoprotein (Env) contains determinants for broadly neutralizing antibodies and has remained an important focus of vaccine design. However, creating an immunogen that elicits broadly neutralizing antibodies to this region has proven difficult in part due to the relative inaccessibility of the MPER in the native conformation of Env. Here, we describe the antigenicity and immunogenicity of a panel of oligomeric gp41 immunogens designed to model a fusion-intermediate conformation of Env in order to enhance MPER exposure in a relevant conformation. The immunogens contain segments of the gp41 N- and C-heptad repeats to mimic a trapped intermediate, followed by the MPER, with variations that include different N-heptad lengths, insertion of extra epitopes, and varying C-termini. These well-characterized immunogens were evaluated in two different immunization protocols involving gp41 and gp140 proteins, gp41 and gp160 DNA primes, and different immunization schedules and adjuvants. We found that the immunogens designed to reduce extension of helical structure into the MPER elicited the highest MPER antibody binding titers, but these antibodies lacked neutralizing activity. The gp41 protein immunogens also elicited higher MPER titers than the gp140 protein immunogen. In prime-boost studies, the best MPER responses were seen in the groups that received DNA priming with gp41 vectors followed by gp41 protein boosts. Finally, although titers to the entire protein immunogen were similar in the two immunization protocols, MPER-specific titers differed, suggesting that the immunization route, schedule, dose, or adjuvant may differentially influence MPER immunogenicity. These findings inform the design of future MPER immunogens and immunization protocols.
- Published
- 2015
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6. Stabilizing exposure of conserved epitopes by structure guided insertion of disulfide bond in HIV-1 envelope glycoprotein.
- Author
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Aemro Kassa, Antu K Dey, Pampi Sarkar, Celia Labranche, Eden P Go, Daniel F Clark, Yide Sun, Avishek Nandi, Karin Hartog, Heather Desaire, David Montefiori, Andrea Carfi, Indresh K Srivastava, and Susan W Barnett
- Subjects
Medicine ,Science - Abstract
Entry of HIV-1 into target cells requires binding of the viral envelope glycoprotein (Env) to cellular receptors and subsequent conformational changes that culminates in fusion of viral and target cell membranes. Recent structural information has revealed that these conformational transitions are regulated by three conserved but potentially flexible layers stacked between the receptor-binding domain (gp120) and the fusion arm (gp41) of Env. We hypothesized that artificial insertion of a covalent bond will 'snap' Env into a conformation that is less mobile and stably expose conserved sites. Therefore, we analyzed the interface between these gp120 layers (layers 1, 2 and 3) and identified residues that may form disulfide bonds when substituted with cysteines. We subsequently probed the structures of the resultant mutant gp120 proteins by assaying their binding to a variety of ligands using Surface Plasmon Resonance (SPR) assay. We found that a single disulfide bond strategically inserted between the highly conserved layers 1 and 2 (C65-C115) is able to 'lock' gp120 in a CD4 receptor bound conformation (in the absence of CD4), as indicated by the lower dissociation constant (Kd) for the CD4-induced (CD4i) epitope binding 17b antibody. When disulfide-stabilized monomeric (gp120) and trimeric (gp140) Envs were used to immunize rabbits, they were found to elicit a higher proportion of antibodies directed against both CD4i and CD4 binding site epitopes than the wild-type proteins. These results demonstrate that structure-guided stabilization of inter-layer interactions within HIV-1 Env can be used to expose conserved epitopes and potentially overcome the sequence diversity of these molecules.
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- 2013
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7. Elicitation of neutralizing antibodies directed against CD4-induced epitope(s) using a CD4 mimetic cross-linked to a HIV-1 envelope glycoprotein.
- Author
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Antu K Dey, Brian Burke, Yide Sun, Klara Sirokman, Avishek Nandi, Karin Hartog, Ying Lian, Anthony R Geonnotti, David Montefiori, Michael Franti, Grégoire Martin, Andrea Carfi, Pascal Kessler, Loïc Martin, Indresh K Srivastava, and Susan W Barnett
- Subjects
Medicine ,Science - Abstract
The identification of HIV-1 envelope glycoprotein (Env) structures that can generate broadly neutralizing antibodies (BNAbs) is pivotal to the development of a successful vaccine against HIV-1 aimed at eliciting effective humoral immune responses. To that end, the production of novel Env structure(s) that might induce BNAbs by presentation of conserved epitopes, which are otherwise occluded, is critical. Here, we focus on a structure that stabilizes Env in a conformation representative of its primary (CD4) receptor-bound state, thereby exposing highly conserved "CD4 induced" (CD4i) epitope(s) known to be important for co-receptor binding and subsequent virus infection. A CD4-mimetic miniprotein, miniCD4 (M64U1-SH), was produced and covalently complexed to recombinant, trimeric gp140 envelope glycoprotein (gp140) using site-specific disulfide linkages. The resulting gp140-miniCD4 (gp140-S-S-M64U1) complex was recognized by CD4i antibodies and the HIV-1 co-receptor, CCR5. The gp140-miniCD4 complex elicited the highest titers of CD4i binding antibodies as well as enhanced neutralizing antibodies against Tier 1 viruses as compared to gp140 protein alone following immunization of rabbits. Neutralization against HIV-2(7312/V434M) and additional serum mapping confirm the specific elicitation of antibodies directed to the CD4i epitope(s). These results demonstrate the utility of structure-based approach in improving immunogenic response against specific region, such as the CD4i epitope(s) here, and its potential role in vaccine application.
- Published
- 2012
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8. Dynamically tunable resonant strength in an electromagnetically induced transparency metasurface based on vanadium dioxide
- Author
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Linyu Yang, Wei Wang, Yide Sun, and Rongji Yin
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- 2023
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9. A frequency-adjustable electromagnetic induced transparency with terahertz metasurface based on vanadium dioxide
- Author
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Linyu Yang, Wei Wang, Yide Sun, Chunyue Zhao, and Ying Zhang
- Published
- 2022
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10. Adjustable electromagnetically induced transparency based on terahertz metamaterial embedded with vanadium dioxide
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Wu Xiaoting, Wang Wei, Chi Liu, Yide Sun, and Ying Zhang
- Subjects
Vanadium dioxide ,Materials science ,Electromagnetically induced transparency ,business.industry ,Terahertz radiation ,Optoelectronics ,Metamaterial ,business - Published
- 2021
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11. Analysis of Impulsive Buying Behavior in Live Broadcast Scenarios
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Yide Sun
- Subjects
Product (business) ,Value (ethics) ,Consumption (economics) ,Promotion (rank) ,Incentive ,business.industry ,media_common.quotation_subject ,Mainstream ,The Internet ,Advertising ,business ,Purchasing ,media_common - Abstract
In the past two years, with the continuous development of the Internet economy and the increase of e-commerce platforms, product sales in the form of live broadcast have also become the mainstream. This article takes e-commerce live broadcasts as the starting point, and takes consumers who have experienced live broadcasts to make impulsive purchases as the research object. Based on theoretical research and empirical analysis, this article focuses on the factors that trigger consumer impulsive buying behaviors in e-commerce live broadcasts, including marketing incentives (promotion discounts), scenarios (anchor interaction) and individual characteristics (positive emotions) and their influence mechanisms. Through the analysis of the above factors, consumers have a clearer understanding of the psychological activities and purchasing behaviors when their impulse purchases occur, and guide different consumer groups to make rational and appropriate consumption. On the other hand, they assist e-commerce companies to make full use of live marketing, value and precise positioning of target consumer groups, optimization of corporate marketing decision-making and management level.
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- 2020
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12. Increased, Durable B-Cell and ADCC Responses Associated with T-Helper Cell Responses to HIV-1 Envelope in Macaques Vaccinated with gp140 Occluded at the CD4 Receptor Binding Site
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Petra Mooij, Willy M. J. M. Bogers, Daniella Mortier, Niels Beenhakker, Herman Oostermeijer, Rachel P. J. Lai, Indresh K. Srivastava, David C. Montefiori, Brian Burke, David Davis, Grégoire Martin, Susan W. Barnett, Gerrit Koopman, Ivonne G. Nieuwenhuis, Edmund Remarque, Antu K. Dey, Guido Ferrari, Jonathan L. Heeney, Loïc Martin, Yide Sun, Heeney, Jonathan [0000-0003-2702-1621], Apollo - University of Cambridge Repository, Novartis Vaccines, Centre de recherche du CEA/DSV/iBiTec-S/SIMOPRO, Novartis Vaccines and Diagnostics [Siena], Department of Anatomy and Cell Biology, The University of Florida College of Medicine, Duke Human Vaccine Institute [Durham, North Carolina, USA], Duke Human Vaccine Institute, and Duke School of Medicine
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0301 basic medicine ,CD4 mimetic ,[CHIM.THER]Chemical Sciences/Medicinal Chemistry ,HIV Antibodies ,chemistry.chemical_compound ,ComputingMilieux_MISCELLANEOUS ,AIDS Vaccines ,B-Lymphocytes ,human immunodeficiency virus ,Immunogenicity ,ELISPOT ,Vaccination ,env Gene Products, Human Immunodeficiency Virus ,T-Lymphocytes, Helper-Inducer ,T helper cell ,vaccines ,[SDV.BBM.BC]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biomolecules [q-bio.BM] ,3. Good health ,medicine.anatomical_structure ,[SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology ,CD4 Antigens ,CD4 antigen ,nonhuman primates ,030106 microbiology ,Immunology ,B-cell responses ,Biology ,CD4 occluded ,Microbiology ,Affinity maturation ,03 medical and health sciences ,Antigen ,Virology ,Vaccines and Antiviral Agents ,medicine ,Animals ,[SDV.BBM.BC]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biochemistry [q-bio.BM] ,B cell ,[SDV.BA.MVSA]Life Sciences [q-bio]/Animal biology/Veterinary medicine and animal Health ,Antibody-Dependent Cell Cytotoxicity ,Germinal center ,[SDV.IMM.IMM]Life Sciences [q-bio]/Immunology/Immunotherapy ,Antibodies, Neutralizing ,Macaca mulatta ,030104 developmental biology ,chemistry ,Insect Science ,T-cell responses ,HIV-1 ,Binding Sites, Antibody ,[SDV.IMM.VAC]Life Sciences [q-bio]/Immunology/Vaccinology - Abstract
Strategies are needed to improve the immunogenicity of HIV-1 envelope (Env) antigens (Ag) for more long-lived, efficacious HIV-1 vaccine-induced B-cell responses. HIV-1 Env gp140 (native or uncleaved molecules) or gp120 monomeric proteins elicit relatively poor B-cell responses which are short-lived. We hypothesized that Env engagement of the CD4 receptor on T-helper cells results in anergic effects on T-cell recruitment and consequently a lack of strong, robust, and durable B-memory responses. To test this hypothesis, we occluded the CD4 binding site (CD4bs) of gp140 by stable cross-linking with a 3-kDa CD4 miniprotein mimetic, serving to block ligation of gp140 on CD4 + T cells while preserving CD4-inducible (CDi) neutralizing epitopes targeted by antibody-dependent cellular cytotoxicity (ADCC) effector responses. Importantly, immunization of rhesus macaques consistently gave superior B-cell ( P < 0.001) response kinetics and superior ADCC ( P < 0.014) in a group receiving the CD4bs-occluded vaccine compared to those of animals immunized with gp140. Of the cytokines examined, Ag-specific interleukin-4 (IL-4) T-helper enzyme-linked immunosorbent spot (ELISpot) assays of the CD4bs-occluded group increased earlier ( P = 0.025) during the inductive phase. Importantly, CD4bs-occluded gp140 antigen induced superior B-cell and ADCC responses, and the elevated B-cell responses proved to be remarkably durable, lasting more than 60 weeks postimmunization. IMPORTANCE Attempts to develop HIV vaccines capable of inducing potent and durable B-cell responses have been unsuccessful until now. Antigen-specific B-cell development and affinity maturation occurs in germinal centers in lymphoid follicles through a critical interaction between B cells and T follicular helper cells. The HIV envelope binds the CD4 receptor on T cells as soluble shed antigen or as antigen-antibody complexes, causing impairment in the activation of these specialized CD4-positive T cells. We proposed that CD4-binding impairment is partly responsible for the relatively poor B-cell responses to HIV envelope-based vaccines. To test this hypothesis, we blocked the CD4 binding site of the envelope antigen and compared it to currently used unblocked envelope protein. We found superior and durable B-cell responses in macaques vaccinated with an occluded CD4 binding site on the HIV envelope antigen, demonstrating a potentially important new direction in future design of new HIV vaccines.
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- 2017
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13. Putative role of Tat–Env interaction in HIV infection
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Prasanna R. Kolatkar, Carlos G. Moscoso, Yide Sun, Indresh K. Srivastava, Selina Poon, Li Xing, R. Holland Cheng, Anders Vahlne, Susan W. Barnett, and Elaine Kan
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chemistry.chemical_classification ,Immunogen ,Molecular model ,Chemistry ,viruses ,Cryoelectron Microscopy ,Immunology ,Rational design ,virus diseases ,HIV Infections ,Computational biology ,HIV Envelope Protein gp120 ,V3 loop ,Virus Replication ,Virology ,Epitope ,Infectious Diseases ,Docking (molecular) ,HIV-1 ,Humans ,Immunology and Allergy ,tat Gene Products, Human Immunodeficiency Virus ,Glycoprotein ,Protein Binding ,Integrin binding - Abstract
Objective: To study the complex formed between Tat protein and Env soluble trimeric immunogen, and compare with previously determined structures of Env native trimers and Env–CD4m complexes. Design: The soluble Env trimer was used to mimic the spike glycoprotein on the virus surface for the study. To overcome limitations of other structural determination methods, cryoelectron microscopy was employed to image the complex, and single particle reconstruction was utilized to reconstruct the structure of the complex from collected micrographs. Molecular modeling of gp120–Tat was performed to provide atomic coordinates for docking. Methods: Images were preprocessed by multivariate statistical analysis to identify principal components of variation then submitted for reconstruction. Reconstructed structures were docked with modeled gp120–Tat atomic coordinates to study the positions of crucial epitopes. Results: Analysis of the Env–Tat complex demonstrated an intermediate structure between Env native trimers and Env–CD4m structures. Docking results indicate that the CD4-binding site and the V3 loop are exposed in the Env–Tat complex. The integrin-binding sequence in Tat was also exposed in Env–Tat docking. Conclusion: The intermediate structure induced by Tat-interaction with Env could potentially provide an explanation for increased virus infection in the presence of Tat protein. Consequently, exposure of CD4-binding sites and a putative integrin-binding sequence on Tat in the complex may provide a new avenue for rational design of an effective HIV vaccine.
- Published
- 2013
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14. Effect of the strength of adsorption of HIV 1 SF162dV2gp140 to aluminum‐containing adjuvants on the immune response
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Harm HogenEsch, Indresh K. Srivastava, Yide Sun, Stanley L. Hem, Manmohan Singh, Bethany Hansen, and Padma Malyala
- Subjects
Langmuir ,Stereochemistry ,Drug Compounding ,medicine.medical_treatment ,Potassium ,Pharmaceutical Science ,chemistry.chemical_element ,Aluminum Hydroxide ,Mice ,chemistry.chemical_compound ,Adsorption ,Adjuvants, Immunologic ,Antigen ,medicine ,Animals ,AIDS Vaccines ,Mice, Inbred BALB C ,biology ,Chemistry ,env Gene Products, Human Immunodeficiency Virus ,Surface Plasmon Resonance ,Immunity, Humoral ,Immunoglobulin G ,Antibody Formation ,HIV-1 ,biology.protein ,Hydroxide ,Female ,Antibody ,Adjuvant ,Nuclear chemistry ,Immunopotentiation - Abstract
The importance of the strength of antigen adsorption by aluminum-containing adjuvants on immunopotentiation was studied using HIV 1 SF162dV2gp140 (gp140), a potential HIV/AIDS antigen. The strengths of adsorption by aluminum hydroxide (AH) adjuvant and aluminum phosphate adjuvant, as measured by the Langmuir adsorptive coefficient, were 1900 and 400 mL/mg, respectively. The strength of adsorption by AH was modified by pretreatment of AH with two different concentrations of potassium dihydrogen phosphate to produce phosphate-treated aluminum hydroxide adjuvants having adsorptive coefficients of 1200 and 800 mL/mg. The four adjuvants were used to prepare vaccines containing either 1 or 10 μg of gp140 per dose. Antibody studies in mice revealed that the presence of an adjuvant increased the immune response in comparison with a solution of gp140 when the dose was 1 μg. Furthermore, the immune response was inversely related to the adsorptive coefficient. In contrast, no significant difference in immunopotentiation was observed between treatments in the presence or absence of an adjuvant when the dose of gp140 was 10 μg. Analysis of the binding of gp140 to CD4 and anti-gp140 monoclonal antibodies by surface plasmon resonance suggests that tight binding induced structural changes in the antigen.
- Published
- 2011
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15. Neutralizing antibody responses to subtype B and C adjuvanted HIV envelope protein vaccination in rabbits
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Susan W. Barnett, Jeffrey B. Ulmer, Yide Sun, Indresh K. Srivastava, Elaine Kan, Ying Lian, Brian Burke, and Victor Raul Gomez-Roman
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Squalene ,CpG Oligodeoxynucleotide ,Drug Evaluation, Preclinical ,Polysorbates ,HIV Infections ,Antibodies, Viral ,Article ,Epitope ,Multivalent ,Neutralization ,Adjuvants, Immunologic ,Neutralization Tests ,CpG ,Virology ,Animals ,Adjuvants ,HIV vaccine ,Neutralizing antibody ,AIDS Vaccines ,biology ,Vaccination ,env Gene Products, Human Immunodeficiency Virus ,virus diseases ,HIV envelope protein ,MF59 ,Oligodeoxyribonucleotides ,Immunization ,Antibody Formation ,Immunology ,HIV-1 ,biology.protein ,Rabbits ,Antibody - Abstract
Improving the potency, breadth, and durability of neutralizing antibody responses to HIV are major challenges for HIV vaccine development. To address these challenges, the studies described evaluate in rabbits the titers, breadth, and epitope specificities of antibody responses elicited by HIV envelope subunit vaccines adjuvanted with MF59 with or without CpG oligodeoxynucleotide (ODN). Animals were immunized with trimeric o-gp140ΔV2 derived from subtype B HIV-1SF162 or subtype C HIV-1TV1, or proteins from both strains. Immunization with SF162 or TV1 with MF59/CpG elicited higher titers of binding and neutralizing antibodies to SF162 than monovalent immunization with MF59 alone (P
- Published
- 2009
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16. A simple one-step method for the preparation of HIV-1 envelope glycoprotein immunogens based on a CD4 mimic peptide
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Anne Descours, Bernadette Heyd, Grégoire Martin, Indresh K. Srivastava, Olivier Combes, Jeffrey B. Ulmer, Susan W. Barnett, Loïc Martin, Yide Sun, Service d'Ingénierie Moléculaire pour la Santé (ex SIMOPRO) (SIMoS), Médicaments et Technologies pour la Santé (MTS), Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Novartis Vaccines and Diagnostics [Siena], and This work was supported by grant 'HIV Vaccine Research and Design, HIVRAD' PAR-00-093 from the National Institute of Allergy and Infectious Diseases, National Institutes of Health, supervised by Novartis Vaccines and Diagnostics, Inc.
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Receptors, CCR5 ,medicine.drug_class ,Peptide ,[CHIM.THER]Chemical Sciences/Medicinal Chemistry ,Plasma protein binding ,CHO Cells ,Biology ,HIV Antibodies ,HIV Envelope Protein gp120 ,Monoclonal antibody ,Affinity chromatography ,Article ,Chromatography, Affinity ,03 medical and health sciences ,0302 clinical medicine ,Cricetulus ,[SDV.SP.MED]Life Sciences [q-bio]/Pharmaceutical sciences/Medication ,Cricetinae ,Virology ,Protein purification ,AIDS vaccine ,medicine ,Animals ,030212 general & internal medicine ,[SDV.BBM.BC]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biochemistry [q-bio.BM] ,Rats, Wistar ,Trimer ,030304 developmental biology ,chemistry.chemical_classification ,0303 health sciences ,Immunogenicity ,virus diseases ,CD4 mimic ,Ligand (biochemistry) ,Recombinant Proteins ,3. Good health ,Rats ,Monomer ,chemistry ,CD4 Antigens ,HIV-1 ,[SDV.IMM.VAC]Life Sciences [q-bio]/Immunology/Vaccinology ,Protein Multimerization ,Glycoprotein ,Peptides ,Protein Binding - Abstract
International audience; To counteract the problems associated with the purification of HIV envelope, we developed a new purification method exploiting the high affinity of a peptide mimicking CD4 towards the viral glycoprotein. This miniCD4 was used as a ligand in affinity chromatography and allowed the separation in one step of HIV envelope monomer from cell supernatant and the capture of pre-purified trimer. This simple and robust method of purification yielded to active and intact HIV envelopes as proved by the binding of CCR5 HIV co-receptor, CD4 and a panel of well-characterized monoclonal antibodies. The immunogenicity of miniCD4-purified HIV envelope was further assessed in rats. The analysis of the humoral response indicated that elicited antibodies were able to recognize a broad range of HIV envelopes. Finally, this method based on a chemically synthesized peptide may represent a convenient and versatile tool for protein purification compatible far scale-up in both academic and pharmaceutical researches.
- Published
- 2008
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17. Immunogens Modeling a Fusion-Intermediate Conformation of gp41 Elicit Antibodies to the Membrane Proximal External Region of the HIV Envelope Glycoprotein
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Antu K. Dey, Yide Sun, Prasad Vennakalanti, Min Zhuang, Indresh K. Srivastava, Yong He, Susan W. Barnett, David C. Montefiori, Celia C. LaBranche, Russell Vassell, Carol D. Weiss, Zohar Biron-Sorek, and Wei Wang
- Subjects
Antigenicity ,Immunogen ,medicine.drug_class ,Protein Conformation ,viruses ,lcsh:Medicine ,Enzyme-Linked Immunosorbent Assay ,chemical and pharmacologic phenomena ,Biology ,HIV Antibodies ,Monoclonal antibody ,Gp41 ,complex mixtures ,Epitope ,03 medical and health sciences ,Antigen ,Neutralization Tests ,medicine ,Animals ,lcsh:Science ,030304 developmental biology ,AIDS Vaccines ,0303 health sciences ,Vaccines, Synthetic ,Multidisciplinary ,030306 microbiology ,Immunogenicity ,lcsh:R ,Antibodies, Monoclonal ,Virology ,HIV Envelope Protein gp41 ,3. Good health ,biology.protein ,HIV-1 ,lcsh:Q ,Rabbits ,Antibody ,Viral Fusion Proteins ,Research Article - Abstract
The membrane proximal external region (MPER) of the gp41 subunit of the HIV-1 envelope glycoprotein (Env) contains determinants for broadly neutralizing antibodies and has remained an important focus of vaccine design. However, creating an immunogen that elicits broadly neutralizing antibodies to this region has proven difficult in part due to the relative inaccessibility of the MPER in the native conformation of Env. Here, we describe the antigenicity and immunogenicity of a panel of oligomeric gp41 immunogens designed to model a fusion-intermediate conformation of Env in order to enhance MPER exposure in a relevant conformation. The immunogens contain segments of the gp41 N- and C-heptad repeats to mimic a trapped intermediate, followed by the MPER, with variations that include different N-heptad lengths, insertion of extra epitopes, and varying C-termini. These well-characterized immunogens were evaluated in two different immunization protocols involving gp41 and gp140 proteins, gp41 and gp160 DNA primes, and different immunization schedules and adjuvants. We found that the immunogens designed to reduce extension of helical structure into the MPER elicited the highest MPER antibody binding titers, but these antibodies lacked neutralizing activity. The gp41 protein immunogens also elicited higher MPER titers than the gp140 protein immunogen. In prime-boost studies, the best MPER responses were seen in the groups that received DNA priming with gp41 vectors followed by gp41 protein boosts. Finally, although titers to the entire protein immunogen were similar in the two immunization protocols, MPER-specific titers differed, suggesting that the immunization route, schedule, dose, or adjuvant may differentially influence MPER immunogenicity. These findings inform the design of future MPER immunogens and immunization protocols.
- Published
- 2015
18. Trimeric HIV Env provides epitope occlusion mediated by hypervariable loops
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Carlos G. Moscoso, Indresh K. Srivastava, Susan W. Barnett, Lassi Paavolainen, R. Holland Cheng, Mohammad Baikoghli Kalkhoran, Anders Vahlne, Jinwen Hui, Loïc Martin, Jeffrey Hu, Li Xing, Carlo Zambonelli, Onur M. Yenigun, Yide Sun, Novartis Vaccines and Diagnostics [Siena], Direction de Recherche Fondamentale (CEA) (DRF (CEA)), and Commissariat à l'énergie atomique et aux énergies alternatives (CEA)
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Models, Molecular ,Protein Conformation ,viruses ,Human immunodeficiency virus (HIV) ,[CHIM.THER]Chemical Sciences/Medicinal Chemistry ,Plasma protein binding ,HIV Envelope Protein gp120 ,medicine.disease_cause ,Env Protein ,Epitope ,env Gene Products ,Epitopes ,Protein structure ,Models ,ComputingMilieux_MISCELLANEOUS ,Sequence Deletion ,Genetics ,Multidisciplinary ,[SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Structural Biology [q-bio.BM] ,Transition (genetics) ,biology ,env Gene Products, Human Immunodeficiency Virus ,virus diseases ,hypervariable loops ,HIV Envelope Protein gp41 ,[SDV.BBM.BC]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biomolecules [q-bio.BM] ,3. Good health ,[SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biomolecules [q-bio.BM] ,CD4 Antigens ,HIV/AIDS ,Antibody ,Human Immunodeficiency Virus ,Protein Binding ,Env ,Gp41 ,Article ,Vaccine Related ,[CHIM.CRIS]Chemical Sciences/Cristallography ,medicine ,Humans ,Protein Interaction Domains and Motifs ,[SDV.BBM.BC]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biochemistry [q-bio.BM] ,Antigens ,Vaccine Related (AIDS) ,Prevention ,ta1182 ,Molecular ,[SDV.IMM.IMM]Life Sciences [q-bio]/Immunology/Immunotherapy ,CD4 ,Peptide Fragments ,gp120 ,Good Health and Well Being ,HIV-1 ,biology.protein ,Immunization ,Protein Multimerization ,protein - Abstract
Hypervariable loops of HIV-1 Env protein gp120 are speculated to play roles in the conformational transition of Env to the receptor binding-induced metastable state. Structural analysis of full-length Env-based immunogens, containing the entire V2 loop, displayed tighter association between gp120 subunits, resulting in a smaller trimeric diameter than constructs lacking V2. A prominent basal quaternary location of V2 and V3′ that challenges previous reports would facilitate gp41-independent gp120-gp120 interactions and suggests a quaternary mechanism of epitope occlusion facilitated by hypervariable loops. Deletion of V2 resulted in dramatic exposure of basal, membrane-proximal gp41 epitopes, consistent with its predicted basal location. The structural features of HIV-1 Env characterized here provide grounds for a paradigm shift in loop exposure and epitope occlusion, while providing substantive rationale for epitope display required for elicitation of broadly neutralizing antibodies, as well as substantiating previous pertinent literature disregarded in recent reports.
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- 2014
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19. Comparison of Immunity Generated by Nucleic Acid-, MF59-, and ISCOM-Formulated Human Immunodeficiency Virus Type 1 Vaccines in Rhesus Macaques: Evidence for Viral Clearance
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Herman Oostermeijer, Mike van der Kolk, Jonathan L. Heeney, Petra Mooij, Deborah H. Fuller, Yide Sun, Ernst J. Verschoor, Susan W. Barnett, Babs E. Verstrepen, Lennart Åkerblom, Bror Morein, and Peter ten Haaft
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Squalene ,animal diseases ,Chemistry, Pharmaceutical ,medicine.medical_treatment ,Immunology ,MF59 ,Polysorbates ,HIV Envelope Protein gp120 ,Biology ,Microbiology ,Virus ,Immune system ,Adjuvants, Immunologic ,Immunity ,Virology ,Vaccines and Antiviral Agents ,medicine ,Animals ,Humans ,Immunodeficiency ,AIDS Vaccines ,Acquired Immunodeficiency Syndrome ,Immunity, Cellular ,ISCOM ,biochemical phenomena, metabolism, and nutrition ,medicine.disease ,Macaca mulatta ,Recombinant Proteins ,Insect Science ,HIV-1 ,biology.protein ,Antibody ,Adjuvant ,ISCOMs - Abstract
The kinetics of T-helper immune responses generated in 16 mature outbred rhesus monkeys ( Macaca mulatta ) within a 10-month period by three different human immunodeficiency virus type 1 (HIV-1) vaccine strategies were compared. Immune responses to monomeric recombinant gp120 SF2 (rgp120) when the protein was expressed in vivo by DNA immunization or when it was delivered as a subunit protein vaccine formulated either with the MF59 adjuvant or by incorporation into immune-stimulating complexes (ISCOMs) were compared. Virus-neutralizing antibodies (NA) against HIV-1 SF2 reached similar titers in the two rgp120 SF2 protein-immunized groups, but the responses showed different kinetics, while NA were delayed and their levels were low in the DNA-immunized animals. Antigen-specific gamma interferon (IFN-γ) T-helper (type 1-like) responses were detected in the DNA-immunized group, but only after the fourth immunization, and the rgp120/MF59 group generated both IFN-γ and interleukin-4 (IL-4) (type 2-like) responses that appeared after the third immunization. In contrast, rgp120/ISCOM-immunized animals rapidly developed marked IL-2, IFN-γ (type 1-like), and IL-4 responses that peaked after the second immunization. To determine which type of immune responses correlated with protection from infection, all animals were challenged intravenously with 50 50% infective doses of a rhesus cell-propagated, in vivo-titrated stock of a chimeric simian immunodeficiency virus-HIV SF13 construct. Protection was observed in the two groups receiving the rgp120 subunit vaccines. Half of the animals in the ISCOM group were completely protected from infection. In other subunit vaccinees there was evidence by multiple assays that virus detected at 2 weeks postchallenge was effectively cleared. Early induction of potent type 1- as well as type 2-like T-helper responses induced the most-effective immunity.
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- 1999
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20. Stabilizing exposure of conserved epitopes by structure guided insertion of disulfide bond in HIV-1 envelope glycoprotein
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Celia C. LaBranche, Aemro Kassa, Avishek Nandi, Indresh K. Srivastava, Eden P. Go, Yide Sun, Pampi Sarkar, Heather Desaire, Daniel F. Clark, Antu K. Dey, Susan W. Barnett, Karin Hartog, Andrea Carfi, and David C. Montefiori
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Models, Molecular ,viruses ,lcsh:Medicine ,Plasma protein binding ,HIV Envelope Protein gp120 ,Gp41 ,Ligands ,Epitope ,Antibodies ,03 medical and health sciences ,Epitopes ,Viral envelope ,Animals ,Humans ,Protein Interaction Domains and Motifs ,Disulfides ,Binding site ,lcsh:Science ,030304 developmental biology ,chemistry.chemical_classification ,0303 health sciences ,Multidisciplinary ,Binding Sites ,030302 biochemistry & molecular biology ,lcsh:R ,env Gene Products, Human Immunodeficiency Virus ,virus diseases ,Surface Plasmon Resonance ,Molecular biology ,3. Good health ,chemistry ,Covalent bond ,CD4 Antigens ,Mutation ,Biophysics ,HIV-1 ,Female ,Immunization ,lcsh:Q ,Rabbits ,Glycoprotein ,Cysteine ,Protein Binding ,Research Article - Abstract
Entry of HIV-1 into target cells requires binding of the viral envelope glycoprotein (Env) to cellular receptors and subsequent conformational changes that culminates in fusion of viral and target cell membranes. Recent structural information has revealed that these conformational transitions are regulated by three conserved but potentially flexible layers stacked between the receptor-binding domain (gp120) and the fusion arm (gp41) of Env. We hypothesized that artificial insertion of a covalent bond will ‘snap’ Env into a conformation that is less mobile and stably expose conserved sites. Therefore, we analyzed the interface between these gp120 layers (layers 1, 2 and 3) and identified residues that may form disulfide bonds when substituted with cysteines. We subsequently probed the structures of the resultant mutant gp120 proteins by assaying their binding to a variety of ligands using Surface Plasmon Resonance (SPR) assay. We found that a single disulfide bond strategically inserted between the highly conserved layers 1 and 2 (C65-C115) is able to ‘lock’ gp120 in a CD4 receptor bound conformation (in the absence of CD4), as indicated by the lower dissociation constant (Kd) for the CD4-induced (CD4i) epitope binding 17b antibody. When disulfide-stabilized monomeric (gp120) and trimeric (gp140) Envs were used to immunize rabbits, they were found to elicit a higher proportion of antibodies directed against both CD4i and CD4 binding site epitopes than the wild-type proteins. These results demonstrate that structure-guided stabilization of inter-layer interactions within HIV-1 Env can be used to expose conserved epitopes and potentially overcome the sequence diversity of these molecules.
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- 2013
21. Rationally designed HIV envelope glycoproteins delivered in a novel adjuvant elicited more broadly reactive antigen-specific antibody responses
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Andrea Carfi, Indresh K. Srivastava, A Kassa, Antu K. Dey, Celia C. LaBranche, Karin Hartog, Susan W. Barnett, Avishek Nandi, David C. Montefiori, and Yide Sun
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lcsh:Immunologic diseases. Allergy ,viruses ,medicine.medical_treatment ,MF59 ,Bioinformatics ,law.invention ,Immune system ,law ,In vivo ,Virology ,medicine ,chemistry.chemical_classification ,biology ,business.industry ,virus diseases ,Infectious Diseases ,chemistry ,Poster Presentation ,Recombinant DNA ,biology.protein ,Antibody ,lcsh:RC581-607 ,business ,Glycoprotein ,Adjuvant ,Cysteine - Abstract
Methods Here, we designed disulfide-stabilized recombinant HIV1 subtype B (SF162) envelope glycoproteins (Env), gp120 and gp140, by insertion of site-specific cysteine pairs between two layers (layer 1 and 2) in inner domain of gp120. In addition, we identified a novel adjuvant approach using Carbopol 971P, a cross-linked polyanionic carbomer, in combination with the Novartis proprietary oil-in water adjuvant, MF59, to augment humoral immune responses to the Env glycoprotein. We performed thorough in vitro analysis of the disulfide-stabilized Env glycoprotein followed by in vivo evaluations of the adjuvanted-Env glycoprotein boost in rabbits.
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- 2012
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22. Elicitation of Neutralizing Antibodies Directed against CD4-Induced Epitope(s) Using a CD4 Mimetic Cross-Linked to a HIV-1 Envelope Glycoprotein
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Loïc Martin, Indresh K. Srivastava, Antu K. Dey, Karin Hartog, Brian Burke, Michael Franti, Avishek Nandi, Andrea Carfi, Anthony R. Geonnotti, Ying Lian, Pascal Kessler, Yide Sun, Susan W. Barnett, Klara Sirokman, Grégoire Martin, David C. Montefiori, Novartis Vaccines and Diagnostics [Siena], Appalachian State University, University of North Carolina System (UNC), Duke University Medical Center, Centre de recherche du CEA/DSV/iBiTec-S/SIMOPRO, Direction de Recherche Fondamentale (CEA) (DRF (CEA)), and Commissariat à l'énergie atomique et aux énergies alternatives (CEA)
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Viral Diseases ,lcsh:Medicine ,[CHIM.THER]Chemical Sciences/Medicinal Chemistry ,HIV Antibodies ,Epitope ,Neutralization ,law.invention ,Epitopes ,Biomimetics ,law ,lcsh:Science ,ComputingMilieux_MISCELLANEOUS ,AIDS Vaccines ,chemistry.chemical_classification ,0303 health sciences ,Multidisciplinary ,biology ,Vaccination ,env Gene Products, Human Immunodeficiency Virus ,Animal Models ,Recombinant Proteins ,3. Good health ,[SDV.BBM.BC]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biomolecules [q-bio.BM] ,Infectious Diseases ,Cross-Linking Reagents ,CD4 Antigens ,Recombinant DNA ,Medicine ,Female ,Rabbits ,Antibody ,Research Article ,Biotechnology ,Bioengineering ,Microbiology ,Virus ,03 medical and health sciences ,Model Organisms ,Antigen ,Neutralization Tests ,Virology ,Animals ,[SDV.BBM.BC]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biochemistry [q-bio.BM] ,Biology ,030304 developmental biology ,Linear epitope ,030306 microbiology ,lcsh:R ,Immunity ,Antibodies, Neutralizing ,chemistry ,Antibody Formation ,HIV-1 ,biology.protein ,Clinical Immunology ,Immunization ,lcsh:Q ,[SDV.IMM.VAC]Life Sciences [q-bio]/Immunology/Vaccinology ,Glycoprotein - Abstract
The identification of HIV-1 envelope glycoprotein (Env) structures that can generate broadly neutralizing antibodies (BNAbs) is pivotal to the development of a successful vaccine against HIV-1 aimed at eliciting effective humoral immune responses. To that end, the production of novel Env structure(s) that might induce BNAbs by presentation of conserved epitopes, which are otherwise occluded, is critical. Here, we focus on a structure that stabilizes Env in a conformation representative of its primary (CD4) receptor-bound state, thereby exposing highly conserved "CD4 induced" (CD4i) epitope(s) known to be important for co-receptor binding and subsequent virus infection. A CD4-mimetic miniprotein, miniCD4 (M64U1-SH), was produced and covalently complexed to recombinant, trimeric gp140 envelope glycoprotein (gp140) using site-specific disulfide linkages. The resulting gp140-miniCD4 (gp140-S-S-M64U1) complex was recognized by CD4i antibodies and the HIV-1 co-receptor, CCR5. The gp140-miniCD4 complex elicited the highest titers of CD4i binding antibodies as well as enhanced neutralizing antibodies against Tier 1 viruses as compared to gp140 protein alone following immunization of rabbits. Neutralization against HIV-2(7312/V434M) and additional serum mapping confirm the specific elicitation of antibodies directed to the CD4i epitope(s). These results demonstrate the utility of structure-based approach in improving immunogenic response against specific region, such as the CD4i epitope(s) here, and its potential role in vaccine application.
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- 2012
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23. Use of a polyanionic carbomer, Carbopol971P, in combination with MF59, improves antibody responses to HIV-1 envelope glycoprotein
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Yide Sun, Susan W. Barnett, Brian Burke, Antu K. Dey, Indresh K. Srivastava, David C. Montefiori, Karin Hartog, and Jonathan L. Heeney
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Squalene ,medicine.medical_treatment ,MF59 ,Polysorbates ,Biology ,HIV Antibodies ,Article ,Immune system ,Antigen ,Adjuvants, Immunologic ,Immunity ,medicine ,Animals ,Humans ,Avidity ,AIDS Vaccines ,General Veterinary ,General Immunology and Microbiology ,Protein Stability ,Public Health, Environmental and Occupational Health ,env Gene Products, Human Immunodeficiency Virus ,Hydrogen-Ion Concentration ,Virology ,Antibodies, Neutralizing ,Infectious Diseases ,Immunization ,Acrylates ,Immunology ,biology.protein ,HIV-1 ,Molecular Medicine ,Female ,Rabbits ,Antibody ,Adjuvant ,Protein Binding - Abstract
Identification of optimal antigen(s) and adjuvant combination(s) to elicit potent, protective, and long-lasting immunity has been a major challenge for the development of effective vaccines against chronic viral pathogens, such as HIV-1, for which there are not yet any licensed vaccines. Here we describe the use of a novel adjuvant approach employing Carbopol 971P(®) NF (hereafter referred to as Carbopol971P), a cross-linked polyanionic carbomer, in combination with the Novartis proprietary oil-in-water adjuvant, MF59, as a potentially safe and effective adjuvant to augment humoral immune responses to the HIV-1 envelope glycoprotein (Env). Intramuscular immunization of small animals with recombinant Env glycoprotein (gp140) formulated in Carbopol971P plus MF59 gave significantly higher titers of binding and virus neutralizing antibodies as compared to immunization using gp140 with either MF59 or Carbopol971P alone. In addition, the antibodies generated were of higher avidity. Importantly, the use of Carbopol971P plus MF59 did not cause any serious adverse reactions or any obvious health problems in animals upon intramuscular administration. Hence, the Carbopol971P plus MF59 adjuvant formulation may provide a benefit for future vaccine applications.
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- 2011
24. Structural Characteristics Predict the Stability of HIV
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Yide Sun, Zohar Biron‐Sorek, Michael Franti, Indresh K. Srivastava, Elaine Kan, Susan W. Barnett, Jeffrey B. Ulmer, and Jeanne Flandez
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Human immunodeficiency virus (HIV) ,medicine ,Biology ,medicine.disease_cause ,Virology - Published
- 2011
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25. Quaternary structures of HIV Env immunogen exhibit conformational vicissitudes and interface diminution elicited by ligand binding
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R. Holland Cheng, Anders Vahlne, Dominik J. Green, Loïc Martin, Frank I. Lin, Li Xing, Selina Poon, Susan W. Barnett, Elaine Kan, Indresh K. Srivastava, Yide Sun, Carlos G. Moscoso, Direction de Recherche Fondamentale (CEA) (DRF (CEA)), and Commissariat à l'énergie atomique et aux énergies alternatives (CEA)
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Models, Molecular ,Immunogen ,Molecular model ,viruses ,Trimer ,[CHIM.THER]Chemical Sciences/Medicinal Chemistry ,Biology ,Crystallography, X-Ray ,Ligands ,Gp41 ,Epitope ,03 medical and health sciences ,[SDV.SP.MED]Life Sciences [q-bio]/Pharmaceutical sciences/Medication ,Humans ,[SDV.BBM.BC]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biochemistry [q-bio.BM] ,Binding site ,Protein Structure, Quaternary ,ComputingMilieux_MISCELLANEOUS ,030304 developmental biology ,0303 health sciences ,Multidisciplinary ,[SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Structural Biology [q-bio.BM] ,Immunodominant Epitopes ,030306 microbiology ,Cryoelectron Microscopy ,env Gene Products, Human Immunodeficiency Virus ,virus diseases ,Lipid bilayer fusion ,Biological Sciences ,Entry into host ,3. Good health ,[SDV.BBM.BC]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biomolecules [q-bio.BM] ,Crystallography ,[SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biomolecules [q-bio.BM] ,CD4 Antigens ,HIV-1 ,Biophysics - Abstract
The human immunodeficiency virus envelope protein is the key element mediating entry into host cells. Conformational rearrangement of Env upon binding to the host CD4 receptor and chemokine coreceptor drives membrane fusion. We elucidated the quaternary arrangement of the soluble Env trimeric immunogen o-gp140ΔV2TV1, in both its native (unliganded) and CD4-induced (liganded) states by cryoelectron microscopy and molecular modeling. The liganded conformation was elicited by binding gp140 to the synthetic CD4-mimicking miniprotein CD4m. Upon CD4m binding, an outward domain shift of the three gp120 subunits diminishes gp120–gp41 interactions, whereas a “flat open” concave trimer apex is observed consequent to gp120 tilting away from threefold axis, likely juxtaposing the fusion peptide with the host membrane. Additional features observed in the liganded conformation include rotations of individual gp120 subunits that may release gp41 for N- and C-helix refolding and also may lead to optimal exposure of the elicited coreceptor binding site. Such quaternary arrangements of gp140 lead to the metastable liganded conformation, with putative locations of exposed epitopes contributing to a description of sequential events occurring prior to membrane fusion. Our observations imply a mechanism whereby a soluble Env trimeric construct, as opposed to trimers extracted from virions, may better expose crucial epitopes such as the CD4 binding site and V3, as well as epitopes in the vicinity of gp41, subsequent to conjugation with CD4m. Structural features gleaned from our studies should aid the design of Env-based immunogens for inducement of potent broadly neutralizing antibodies against exposed conformational epitopes.
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- 2011
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26. Stabilization of HIV-1 Envelope in the CD4-bound Conformation through Specific Cross-linking of a CD4 Mimetic*
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Brian Burke, Elaine Kan, Bernadette Heyd, Toufik Abache, Indresh K. Srivastava, Anthony R. Geonnotti, Grégoire Martin, Ying Lian, Hocine Madaoui, Susan W. Barnett, David C. Montefiori, Yide Sun, Raphael Guerois, Loic Martin, Olivier Combes, Jeffrey B. Ulmer, Pascal Kessler, Robert Thai, Antu K. Dey, Service d’Ingénierie Moléculaire des Protéines, Commissariat à l'énergie atomique et aux énergies alternatives (CEA), Centre de recherche du CEA/DSV/iBiTec-S/SIMOPRO, Novartis Vaccines and Diagnostics [Siena], Service d'Ingénierie Moléculaire pour la Santé (ex SIMOPRO) (SIMoS), Médicaments et Technologies pour la Santé (MTS), Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Duke University Medical Center, Institut de Biologie et de Technologies de Saclay (IBITECS), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay, Assemblage moléculaire et intégrité du génome (AMIG), Département Biochimie, Biophysique et Biologie Structurale (B3S), Institut de Biologie Intégrative de la Cellule (I2BC), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Institut de Biologie Intégrative de la Cellule (I2BC), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS), Novartis Vaccines, and THAI, Robert
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CD4-Positive T-Lymphocytes ,[SDV.BIO]Life Sciences [q-bio]/Biotechnology ,Protein Conformation ,Plasma protein binding ,HIV Envelope Protein gp120 ,medicine.disease_cause ,Biochemistry ,Protein structure ,Viral Envelope Proteins ,[SDV.MHEP.MI]Life Sciences [q-bio]/Human health and pathology/Infectious diseases ,Cricetinae ,Disulfides ,ComputingMilieux_MISCELLANEOUS ,0303 health sciences ,Antigen Presentation ,Affinity labeling ,[SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Structural Biology [q-bio.BM] ,biology ,virus diseases ,3. Good health ,Molecular mimicry ,Cross-Linking Reagents ,[SDV.MHEP.MI] Life Sciences [q-bio]/Human health and pathology/Infectious diseases ,Cricetulus ,Antibody ,Protein Binding ,[CHIM.ANAL] Chemical Sciences/Analytical chemistry ,[SDV.SP.MED] Life Sciences [q-bio]/Pharmaceutical sciences/Medication ,Receptors, CCR5 ,[SDV.BBM.BS] Life Sciences [q-bio]/Biochemistry, Molecular Biology/Structural Biology [q-bio.BM] ,Antigen presentation ,Immunology ,CHO Cells ,Virus ,03 medical and health sciences ,[SDV.IMM.VAC] Life Sciences [q-bio]/Immunology/Vaccinology ,[SDV.SP.MED]Life Sciences [q-bio]/Pharmaceutical sciences/Medication ,[CHIM.ANAL]Chemical Sciences/Analytical chemistry ,medicine ,Animals ,[SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology ,Cysteine ,Molecular Biology ,030304 developmental biology ,030306 microbiology ,Cell Biology ,biology.organism_classification ,Virology ,[SDV.BIO] Life Sciences [q-bio]/Biotechnology ,biology.protein ,HIV-1 ,[SDV.IMM.VAC]Life Sciences [q-bio]/Immunology/Vaccinology - Abstract
CD4 binding on gp120 leads to the exposure of highly conserved regions recognized by the HIV co-receptor CCR5 and by CD4-induced (CD4i) antibodies. A covalent gp120-CD4 complex was shown to elicit CD4i antibody responses in monkeys, which was correlated with control of the HIV virus infection (DeVico, A., Fouts, T., Lewis, G. K., Gallo, R. C., Godfrey, K., Charurat, M., Harris, I., Galmin, L., and Pal, R. (2007) Proc. Natl. Acad. Sci. U.S.A. 104, 17477–17482). Because the inclusion of CD4 in a vaccine formulation should be avoided, due to potential autoimmune reactions, we engineered small sized CD4 mimetics (miniCD4s) that are poorly immunogenic and do not induce anti-CD4 antibodies. We made covalent complexes between such an engineered miniCD4 and gp120 or gp140, through a site-directed coupling reaction. These complexes were recognized by CD4i antibodies as well as by the HIV co-receptor CCR5. In addition, they elicit CD4i antibody responses in rabbits and therefore represent potential vaccine candidates that mimic an important HIV fusion intermediate, without autoimmune hazard.
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- 2011
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27. Antibody-mediated protection against mucosal simian-human immunodeficiency virus challenge of macaques immunized with alphavirus replicon particles and boosted with trimeric envelope glycoprotein in MF59 adjuvant
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Ying Lian, Yide Sun, Jeffrey B. Ulmer, Amanda Goodsell, Susan W. Barnett, Jan zur Megede, Michael Vajdy, Christopher J. Miller, Harold Legg, Kristen Bost, Fengmin Zhou, John M. Polo, Brian Burke, Indresh K. Srivastava, John J. Donnelly, Elaine Kan, and Gillis R. Otten
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Male ,Squalene ,Sindbis virus ,viruses ,Immunology ,Polysorbates ,HIV Infections ,Alphavirus ,Biology ,medicine.disease_cause ,Antibodies, Viral ,Microbiology ,Virus ,Cell Line ,Adjuvants, Immunologic ,Virology ,Vaccines and Antiviral Agents ,medicine ,Animals ,Humans ,Avidity ,Replicon ,AIDS Vaccines ,env Gene Products, Human Immunodeficiency Virus ,virus diseases ,Simian immunodeficiency virus ,biology.organism_classification ,Disease Models, Animal ,Insect Science ,Venezuelan equine encephalitis virus ,biology.protein ,HIV-1 ,Macaca ,Immunization ,Simian Immunodeficiency Virus ,Antibody - Abstract
We have previously shown that rhesus macaques were partially protected against high-dose intravenous challenge with simian-human immunodeficiency virus SHIV SF162P4 following sequential immunization with alpha v irus r eplicon p articles (VRP) of a chimeric recombinant VEE/SIN alphavirus (derived from Venezuelan equine encephalitis virus [VEE] and the Sindbis virus [SIN]) encoding human immunodeficiency virus type 1 HIV-1 SF162 gp140ΔV2 envelope (Env) and trimeric Env protein in MF59 adjuvant (R. Xu, I. K. Srivastava, C. E. Greer, I. Zarkikh, Z. Kraft, L. Kuller, J. M. Polo, S. W. Barnett, and L. Stamatatos, AIDS Res. Hum. Retroviruses 22:1022-1030, 2006). The protection did not require T-cell immune responses directed toward simian immunodeficiency virus (SIV) Gag. We extend those findings here to demonstrate antibody-mediated protection against mucosal challenge in macaques using prime-boost regimens incorporating both intramuscular and mucosal routes of delivery. The macaques in the vaccination groups were primed with VRP and then boosted with Env protein in MF59 adjuvant, or they were given VRP intramuscular immunizations alone and then challenged with SHIV SF162P4 (intrarectal challenge). The results demonstrated that these vaccines were able to effectively protect the macaques to different degrees against subsequent mucosal SHIV challenge, but most noteworthy, all macaques that received the intramuscular VRP prime plus Env protein boost were completely protected. A statistically significant association was observed between the titer of virus neutralizing and binding antibodies as well as the avidity of anti-Env antibodies measured prechallenge and protection from infection. These results highlight the merit of the alphavirus replicon vector prime plus Env protein boost vaccine approach for the induction of protective antibody responses and are of particular relevance to advancing our understanding of the potential correlates of immune protection against HIV infection at a relevant mucosal portal of entry.
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- 2010
28. Comparative immunogenicity of subtype a Human Immunodeficiency Virus type 1 envelope exhibiting differential exposure of conserved neutralization epitopes
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D. Noah Sather, George Sellhorn, Leonidas Stamatatos, Indresh K. Srivastava, Brad Cleveland, Julie Overbaugh, Shiu Lok Hu, Yide Sun, Catherine A. Blish, and Susan W. Barnett
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Immunogen ,medicine.drug_class ,Immunology ,Molecular Sequence Data ,chemical and pharmacologic phenomena ,V3 loop ,Monoclonal antibody ,Antibodies, Viral ,Microbiology ,Epitope ,Epitopes ,Antigen ,Neutralization Tests ,Virology ,Vaccines and Antiviral Agents ,medicine ,Animals ,Humans ,Amino Acid Sequence ,Neutralizing antibody ,AIDS Vaccines ,biology ,Immunogenicity ,env Gene Products, Human Immunodeficiency Virus ,Antibodies, Neutralizing ,Insect Science ,biology.protein ,HIV-1 ,Rabbits ,Antibody ,Sequence Alignment - Abstract
Development of broadly cross-reactive neutralizing antibodies (NAbs) remains a major goal of HIV-1 vaccine development, but most candidate envelope immunogens have had limited ability to cross-neutralize heterologous strains. To evaluate the immunogenicity of subtype A variants of HIV-1, rabbits were immunized with pairs of closely related subtype A envelopes from the same individual. In each immunogen pair, one variant was readily neutralized by a variety of monoclonal antibodies and plasma antibodies, while the other was neutralization resistant, suggesting differences in the exposures of key epitopes. The breadth of the antibody response was evaluated against subtype A, B, C, and D variants of HIV-1. The specificity of the immunogen-derived neutralizing antibody response was also compared to that of the infected individuals from whom these variants were cloned. None of the immunogens produced broad neutralizing antibodies in immunized animals, and most of the neutralizing antibodies were directed to the variable loops, particularly the V3 loop. No detectable antibodies to either of the potentially exposed conserved epitopes, the membrane proximal external region, or the CD4 binding site were found with immunized rabbits. In contrast, relatively little of the neutralizing activity within the plasma samples of the infected individuals was directed to linear epitopes within the variable loops. These data indicate that immunogens designed to expose conserved regions did not enhance generation of broadly neutralizing antibodies in comparison with the immunogens that failed to expose those regions using this immunization approach.
- Published
- 2009
29. Comparative evaluation of trimeric envelope glycoproteins derived from subtype C and B HIV-1 R5 isolates
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Yide Sun, Elaine Kan, Brian Burke, Leonidas Stamatatos, Indresh K. Srivastava, Jimna Cisto, Susan Hilt, Susan W. Barnett, Ying Lian, R. Holland Cheng, Karin Hartog, Jeffrey B. Ulmer, Zohar Biron, and Victoria Sharma
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Gene Expression Regulation, Viral ,Immunogen ,Glycosylation ,HIV Antigens ,Cooperativity ,Trimer ,CHO Cells ,Biology ,Neutralizing antibodies ,Antibodies, Viral ,Epitope ,Cell Line ,03 medical and health sciences ,chemistry.chemical_compound ,Epitopes ,Cricetulus ,Virology ,Cricetinae ,Animals ,Humans ,Binding site ,030304 developmental biology ,chemistry.chemical_classification ,0303 health sciences ,Molecular mass ,030306 microbiology ,HIV ,Antibodies, Monoclonal ,Gene Products, env ,Genetic Variation ,Subtype C ,ITC ,Molecular biology ,CD4 ,3. Good health ,chemistry ,CD4 Antigens ,HIV-1 ,Glycoprotein ,Protein Binding - Abstract
We previously reported that an envelope (Env) glycoprotein immunogen (o-gp140DeltaV2SF162) containing a partial deletion in the second variable loop (V2) derived from the R5-tropic HIV-1 isolate SF162 partially protected vaccinated rhesus macaques against pathogenic SHIV(SF162P4) virus. Extending our studies to subtype C isolate TV1, we have purified o-gp140DeltaV2TV1 (subtype C DeltaV2 trimer) to homogeneity, performed glycosylation analysis, and determined its ability to bind CD4, as well as a panel of well-characterized neutralizing monoclonal antibodies (mAb). In general, critical epitopes are preserved on the subtype C DeltaV2 trimer; however, we did not observe significant binding for the b12 mAb. The molecular mass of subtype C DeltaV2 trimer was found to be 450 kDa, and the hydrodynamic radius was found to be 10.87 nm. Our data suggest that subtype C DeltaV2 trimer binds to CD4 with an affinity comparable to o-gp140DeltaV2SF162 (subtype B DeltaV2 trimer). Using isothermal titration calorimetric (ITC) analysis, we demonstrated that all three CD4 binding sites (CD4-BS) in both subtype C and B trimers are exposed and accessible. However, compared to subtype B trimer, the three CD4-BS in subtype C trimer have different affinities for CD4, suggesting a cooperativity of CD4 binding in subtype C trimer but not in subtype B trimer. Negative staining electron microscopy of the subtype C DeltaV2 trimer has demonstrated that it is in fact a trimer. These results highlight the importance of studying subtype C Env, and also of developing appropriate subtype C-specific reagents that may be used for better immunological characterization of subtype C Env for developing an AIDS vaccine.
- Published
- 2007
30. Approaches to Target Conserved Conformational Epitopes in HIV Envelope
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Michael D. Connolly, Ranjana Srivastava, Yide Sun, Erick Martin, Barbara Capecchi, Jan zur Megede, Jeffrey B. Ulmer, Indresh K. Srivastava, Victoria Sharma, Claudio Vita, Ying Lian, Ron Zuckermann, Susan W. Barnett, Vega Masignani, John J. Donnelly, Elaine Kan, and Rino Rappuoli
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chemistry.chemical_classification ,lcsh:Immunologic diseases. Allergy ,viruses ,Heterologous ,Biology ,Virology ,Virus ,Epitope ,Vaccination ,Infectious Diseases ,chemistry ,Viral entry ,biology.protein ,Binding site ,Antibody ,Glycoprotein ,lcsh:RC581-607 - Abstract
Background HIV-1 envelope glycoprotein (Env) is the primary target for inducing neutralizing antibodies against the virus Env yet only a small fraction of antibodies elicited are directed against conserved epitopes. Thus, the antibodies produced during infection ad vaccination (to date) have been limited in their ability to neutralize heterologous primary isolates. Since interactions between the virus and its receptor and co-receptor are critical for virus entry into the cell, targeting conserved functional epitopes located in or near the receptor and co-receptor binding sites may be the key for developing an effective vaccine. We as well as others have shown that Env-CD4 complexes are capable of inducing broadly neutralizing antibodies, however use of sCD4 as part of the vaccine has the potential for inducing an autoimmune response.
- Published
- 2005
31. Evaluation of Envelope Vaccines Derived from the South African Subtype C Human Immunodeficiency Virus Type 1 TV1 Strain
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Estrelita Janse van Rensburg, Sunee Himathongkham, Paul A. Luciw, Dietmar Rabussay, Yide Sun, John J. Donnelly, Susan Hilt, Indresh K. Srivastava, David C. Montefiori, Elaine Kan, Gillis R. Otten, Jeffrey B. Ulmer, V. Raúl Gómez-Román, Susan Engelbrecht, Susan W. Barnett, Jan zur Megede, and Ying Lian
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Immunology ,Molecular Sequence Data ,Human immunodeficiency virus (HIV) ,Drug Evaluation, Preclinical ,Immunization, Secondary ,HIV Infections ,Biology ,HIV Antibodies ,medicine.disease_cause ,Microbiology ,Injections, Intramuscular ,Virus ,HIV Envelope Protein gp160 ,South Africa ,Viral envelope ,Virus strain ,Neutralization Tests ,Virology ,Vaccines and Antiviral Agents ,medicine ,Vaccines, DNA ,Animals ,Amino Acid Sequence ,AIDS Vaccines ,Strain (biology) ,Vaccination ,env Gene Products, Human Immunodeficiency Virus ,virus diseases ,Gene Products, env ,Macaca mulatta ,Antibody response ,Insect Science ,Human immunodeficiency virus vaccine ,Mutation ,HIV-1 ,Rabbits ,Sequence Alignment ,Gene Deletion - Abstract
Human immunodeficiency virus type 1 (HIV-1) subtype C infections are on the rise in Sub-Saharan Africa and Asia. Therefore, there is a need to develop an HIV vaccine capable of eliciting broadly reactive immune responses against members of this subtype. We show here that modified HIV envelope (env) DNA vaccines derived from the South African subtype C TV1 strain are able to prime for humoral responses in rabbits and rhesus macaques. Priming rabbits with DNA plasmids encoding V2-deleted TV1 gp140 (gp140TV1ΔV2), followed by boosting with oligomeric protein (o-gp140TV1ΔV2) in MF59 adjuvant, elicited higher titers of env-binding and autologous neutralizing antibodies than priming with DNA vaccines encoding the full-length TV1 env (gp160) or the intact TV1 gp140. Immunization with V2-deleted subtype B SF162 env and V2-deleted TV1 env together using a multivalent vaccine approach induced high titers of oligomeric env-binding antibodies and autologous neutralizing antibodies against both the subtypes B and C vaccine strains, HIV-1 SF162 and TV1, respectively. Low-level neutralizing activity against the heterologous South African subtype C TV2 strain, as well as a small subset of viruses in a panel of 13 heterologous primary isolates, was observed in some rabbits immunized with the V2-deleted vaccines. Immunization of rhesus macaques with the V2-deleted TV1 DNA prime/protein boost also elicited high titers of env-binding antibodies and moderate titers of autologous TV1 neutralizing antibodies. The pilot-scale production of the various TV1 DNA vaccine constructs and env proteins described here should provide an initial platform upon which to improve the immunogenicity of these subtype C HIV envelope vaccines.
- Published
- 2005
32. Immunogenicity of HIV-1 Env and Gag in baboons using a DNA prime/protein boost regimen
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Jan zur Megede, Elaine Kan, Louisa Leung, Harold Legg, David C. Montefiori, Indresh K. Srivastava, Yide Sun, Susan W. Barnett, and Catherine Greer
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viruses ,Immunology ,Antibody Affinity ,Immunization, Secondary ,Gene Products, gag ,HIV Antibodies ,Virus ,DNA vaccination ,Antigen ,Vaccines, DNA ,Immunology and Allergy ,Animals ,Primary isolate ,Neutralizing antibody ,AIDS Vaccines ,biology ,Immunogenicity ,env Gene Products, Human Immunodeficiency Virus ,virus diseases ,Gene Products, env ,T-Lymphocytes, Helper-Inducer ,biology.organism_classification ,Virology ,Mutagenesis, Insertional ,Infectious Diseases ,Lentivirus ,DNA, Viral ,biology.protein ,HIV-1 ,Female ,Immunization ,Antibody ,Cell Division ,Papio - Abstract
Objectives: To evaluate the immunogenicity of sequence-modified HIV env and gag in baboons using DNA prime and protein boost strategy. Methods: Synthetic sequence-modified HIV gene cassettes were constructed that expressed three different forms of Env proteins, gp140, gp140 mut and gp140 , plus or minus a mutation in the protease-cleavage site. These plasmids were used to immunize baboons (Papio cynocephalus). A group of baboons was also immunized with both env and gag DNA followed by p55Gag virus-like particles (VLP) boost. Results: Modest antibody responses and low or no lymphoproliferative responses were observed following multiple DNA immunizations. In contrast, strong antibodies and substantial antigen-specific lymphoproliferative responses were seen following booster immunizations with oligomeric Env protein (o-gp140 US4 ) in MF59. Neutralizing antibody responses were scored against T cell line adapted HIV-1 strains after the protein boosters, but neutralizing responses were low or absent against homologous and heterologous primary isolate strains. In the group receiving both gag and env vaccines, modest antigen-specific antibody and lymphoproliferative responses were scored after the DNA immunizations; these responses were enhanced several-fold upon boosting with the VLP preparations. The addition of Gag antigen did not interfere with Env-specific antibody responses, but there was a negative effect on the levels of Env-specific lymphoproliferation. Conclusions: These results highlight the importance of improving the potency of HIV DNA vaccines by enhanced DNA delivery and prime-boost vaccine technologies to generate more robust immune responses in larger animal models. In addition, care must be taken when immunizations with Env and Gag antigens are performed together.
- Published
- 2004
33. Molecular cloning of the human immunodeficiency virus subtype 2 strain HIV-2UC2
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Susan W. Barnett, Christopher P. Locher, Yide Sun, J. Klinger, David J. Blackbourn, Jay A. Levy, and Harold Legg
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Sequence analysis ,viruses ,Genes, vpr ,T-Lymphocytes ,Molecular Sequence Data ,Clone (cell biology) ,Molecular cloning ,Virus ,Cell Line ,Virology ,biology.animal ,Animals ,Humans ,Cloning, Molecular ,Gene ,Tropism ,Cells, Cultured ,Phylogeny ,biology ,Base Sequence ,In vitro ,DNA, Viral ,HIV-2 ,Baboon ,Papio - Abstract
An infectious molecular clone was derived from the HIV-2 UC2 isolate that previously was found to persistently infect and induce an AIDS-like disease syndrome in baboons. The molecularly cloned virus (HIV-2 UC2mc ) showed in vitro properties similar to those of the parental isolate with regard to T-cell tropism, cytopathicity, and the ability to infect primary baboon PBMC. Nevertheless, when inoculated into two baboons, the cloned virus showed a limited ability to replicate in these animals. DNA sequence analysis revealed a defective vpr gene in the UC2mc as well as in the pathogenic parental UC2 strain. Thus, the vpr gene is not required for the induction of disease in baboons. The attenuated infectious molecular clone of UC2 should be useful for future studies designed to map the genetic determinants of HIV-2 pathogenesis in the baboon model and to evaluate vaccine strategies.
- Published
- 1996
34. Potency of an HIV-SAM™ vaccine in a heterologous prime-boost vaccination regimen
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Luis Brito, Karin Hartog, Yide Sun, Nicholas Valiante, Pampi Sarkar, Ayush Verma, Gillis R. Otten, Susan W. Barnett, Kaustuv Banerjee, Andrew Geall, Avishek Nandi, Antu K. Dey, and Yen Cu
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biology ,business.industry ,viruses ,MF59 ,virus diseases ,Priming (immunology) ,Heterologous ,biochemical phenomena, metabolism, and nutrition ,Virology ,3. Good health ,DNA vaccination ,Vaccination ,Infectious Diseases ,Poster Presentation ,biology.protein ,Potency ,Medicine ,Antibody ,business ,CD8 - Abstract
Results We evaluated systemic and mucosal immune responses in mice and rabbits using the SAMTM platform expressing HIV-1 gp140 (HIV-SAMTM vaccine) prime, protein/MF59 vaccine boost regimen for both HIV-1 Clade B and C Env antigens. In mice, the primed Env-specific IgG response to 1 μg of the HIV-SAMTM vaccine was comparable to a 10 μg dose of an identically formulated DNA vaccine, 10(7) IU of VRP, and 10 μg protein/MF59 vaccines. The HIVSAMTM vaccine primed response could be boosted robustly by a protein/MF59 vaccine and resulted in a balanced IgG1, IgG2a subclass response, similar to that seen with the VRP vaccine, but unlike the dominant IgG1 response to protein/MF59 only vaccinations. Both Envspecific CD4+ and CD8+ T-cell responses were detectable after two HIV-SAMTM vaccinations. A TH1 type (IFNg+, IL-5-) profile was demonstrable for the HIV-SAMTM vaccine primed, protein boosted CD4+ T-cell response, similar to that seen with the DNA or VRP primed protein boosted responses, in contrast to a TH2 type (IFNglow, IL-5+) response seen with protein/MF59 vaccination. In rabbits, priming with the 25 or 50 μg of the formulated HIV-SAMTM vaccine induced robust and avid Env-binding IgG and HIV neutralizing antibodies that were superior to 500 μg of an unformulated DNA vaccine and comparable to VRP and protein/MF59 vaccines. In addition, protein/ MF59 boostable Env-specific vaginal wash Ig was consistently demonstrable in both mice and rabbits immunized with the HIV-SAMTM.
- Published
- 2012
35. Stabilization of HIV-1 envelope in the CD4-bound conformation through specific cross-linking of a CD4 mimetic
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Grégoire Martin, Brian Burke, Robert Thaï, Antu K. Dey, Olivier Combes, Oscar H.P. Ramos, Bernadette Heyd, Anthony R. Geonnotti, David C. Montefiori, Elaine Kan, Ying Lian, Yide Sun, Toufik Abache, Jeffrey B. Ulmer, Hocine Madaoui, Raphaël Guérois, Susan W. Barnett, Indresh K. Srivastava, Pascal Kessler, and Loïc Martin
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Additions and Corrections ,Cell Biology ,Molecular Biology ,Biochemistry - Published
- 2011
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36. P19-23. Putative prefusion mechanism of HIV-1 Env revealed by ligand-induced quaternary alterations in o-gp140 trimers
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Loïc Martin, R Cheng, Dj Green, Indresh K. Srivastava, S Poon, Frank I. Lin, Li Xing, Susan W. Barnett, Cg Moscoso, Elaine Kan, Yide Sun, Department of Chemistry - The Chinese University of Hong-Kong, The Chinese University of Hong Kong [Hong Kong], Service d'Ingénierie Moléculaire pour la Santé (ex SIMOPRO) (SIMoS), Médicaments et Technologies pour la Santé (MTS), Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Centre de Recherche en Acquisition et Traitement de l'Image pour la Santé (CREATIS), Université Jean Monnet [Saint-Étienne] (UJM)-Hospices Civils de Lyon (HCL)-Institut National des Sciences Appliquées de Lyon (INSA Lyon), Institut National des Sciences Appliquées (INSA)-Université de Lyon-Institut National des Sciences Appliquées (INSA)-Université de Lyon-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Santé et de la Recherche Médicale (INSERM), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut National des Sciences Appliquées de Lyon (INSA Lyon), and Université de Lyon-Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Université Jean Monnet - Saint-Étienne (UJM)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)
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lcsh:Immunologic diseases. Allergy ,Chemokine ,viruses ,[CHIM.THER]Chemical Sciences/Medicinal Chemistry ,Gp41 ,Cleavage (embryo) ,Bioinformatics ,03 medical and health sciences ,Protein structure ,Mediator ,Virology ,[SDV.BBM.BC]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biochemistry [q-bio.BM] ,ComputingMilieux_MISCELLANEOUS ,030304 developmental biology ,0303 health sciences ,biology ,[SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Structural Biology [q-bio.BM] ,030306 microbiology ,Chemistry ,virus diseases ,Lipid bilayer fusion ,Transmembrane protein ,3. Good health ,Cell biology ,Cytosol ,Infectious Diseases ,[SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology ,Poster Presentation ,biology.protein ,lcsh:RC581-607 - Abstract
Background The human immunodeficiency virus envelope spike is the key mediator of membrane fusion with the host cell and is a promising research target for vaccine development. The surface spike gp120 and the transmembrane protein gp41 result from cleavage of immature cytosolic gp160 and are expressed as trimers. Conformational rearrangement upon binding of gp120 to host CD4 receptors and chemokine coreceptors mediates membrane fusion, exposes the fusion peptide of gp41 and enables viral genome insertion.
- Published
- 2009
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37. Corrigendum to 'Comparative evaluation of trimeric envelope glycoproteins derived from subtype C and B HIV-1 R5 isolates' [Virology 372 (2008) 273–290]
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Jeffrey B. Ulmer, R. Holland Cheng, Zohar Biron, Yide Sun, Brian Burke, Indresh K. Srivastava, Victoria Sharma, Karin Hartog, Ruben Diaz-Avalos, Ying Lian, Jimna Cisto, Elaine Kan, Susan W. Barnett, Leonidas Stamatatos, and Susan Hilt
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chemistry.chemical_classification ,chemistry ,Virology ,Human immunodeficiency virus (HIV) ,medicine ,Biology ,medicine.disease_cause ,Glycoprotein ,Comparative evaluation ,Envelope (waves) - Abstract
Corrigendum to “Comparative evaluation of trimeric envelope glycoproteins derived from subtype C and B HIV-1 R5 isolates” [Virology 372 (2008) 273–290] Indresh K. Srivastava ⁎, Elaine Kan , Yide Sun , Victoria A. Sharma , Jimna Cisto , Brian Burke , Ying Lian , Susan Hilt , Zohar Biron , Karin Hartog , Leonidas Stamatatos , Ruben Diaz-Avalos , R. Holland Cheng , Jeffrey B. Ulmer , Susan W. Barnett a
- Published
- 2008
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38. Antibody mediated protection of immunized macaques against pathogenic SHIV challenge
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Harold Legg, Christopher J. Miller, Brian Burke, Jeffrey B. Ulmer, Elaine Kan, Indresh K. Srivastava, Yide Sun, Michael Vajdy, Leonidas Stamatatos, John J. Donnelly, Catherine Greer, Susan W. Barnett, Ying Lian, and Queency Lee
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Sindbis virus ,biology ,business.industry ,viruses ,Immunogenicity ,MF59 ,virus diseases ,Viremia ,Alphavirus ,biochemical phenomena, metabolism, and nutrition ,biology.organism_classification ,medicine.disease ,Virology ,Virus ,Infectious Diseases ,Immunology ,biology.protein ,Medicine ,Oral Presentation ,Antibody ,HIV vaccine ,business - Abstract
The primary objective of our current HIV vaccine research program is to evaluate novel alphavirus-based and Envelope (Env) protein-based vaccine formulations either alone or in prime boost regimen for improved immunogenicity and efficacy over other HIV vaccine approaches. The outcome of this work will be the production of candidate vaccine components that can be further advanced to clinical trials in human subjects. For these studies we employ viral genes derived from SF162 a primary subtype B HIV-1 isolate in alphavirus replicon particle-based vaccines. A chimeric alphavirus vector system (VEE/SIN) is used that is composed of the Venezuelan Equine Encephalitis (VEE) replicon combined with the Sindbis virus structural proteins. We have performed a proof of concept study where macaques were primed with VEE/SIN, boosted with o-gp140DV2SF162, and challenged intravenously by pathogenic SHIVSF162P4. In the next study we evaluated these recombinant VEE/SIN vaccines alone, and also in combination with DV2-trimer derived from SF162 for their ability to protect against mucosal SHIVSF162P4 challenge. Both parenteral and mucosal routes of immunization have been evaluated to identify the optimal regimen(s) for the induction of potent and protective humoral and cellular responses in rhesus macaques. In the third study, we evaluated the ability of DV2SF162 trimer to protect against against mucosal SHIVSF162P4 challenge. Both parenteral and mucosal routes of immunization have been evaluated. Results so far indicate that the recombinant VEE/SIN particles induced antigen-specific CD4+ and CD8+ T cell responses as well as neutralizing antibodies in small animals (mice and rabbits) and non-human primates. Moreover, intramuscular immunization with VEE/SIN particles encoding SIV gag or gagpol and HIV env is quite effective in priming for potent anti-Env antibody responses. However, it seems intramuscular boosting of alpha primed animals with o-gp140DV2SF162 in MF59 is critical for blocking and/or reducing acute phase viremia following either intravenous or intrarectal SHIVSF162P4 challenges of rhesus macaques. Furthermore, macaques that were immunized intranasally with o-gp140DV2SF162 protein in the LTK63 mucosal adjuvant followed by intramuscular immunization with o-gp140DV2SF162 in MF59 were also protected against SHIVSF162P4 challenge. Protection in these studies appears to occur after the induction of high titer serum neutralizing antibodies that recognize the challenge virus.
- Published
- 2006
39. Trimeric HIV Env provides epitope occlusion mediated by hypervariable loops.
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Moscoso, Carlos G., Li Xing, Jinwen Hui, Hu, Jeffrey, Baikoghli Kalkhoran, Mohammad, Yenigun, Onur M., Yide Sun, Paavolainen, Lassi, Martin, Loïc, Vahlne, Anders, Zambonelli, Carlo, Barnett, Susan W., Srivastava, Indresh K., and Cheng, R. Holland
- Subjects
HIV antibodies ,METASTABLE states ,CARRIER proteins ,EPITOPES ,IMMUNOSPECIFICITY ,IMMUNOGLOBULINS - Abstract
Hypervariable loops of HIV-1 Env protein gp120 are speculated to play roles in the conformational transition of Env to the receptor binding-induced metastable state. Structural analysis of full-length Env-based immunogens, containing the entire V2 loop, displayed tighter association between gp120 subunits, resulting in a smaller trimeric diameter than constructs lacking V2. A prominent basal quaternary location of V2 and V3' that challenges previous reports would facilitate gp41-independent gp120-gp120 interactions and suggests a quaternary mechanism of epitope occlusion facilitated by hypervariable loops. Deletion of V2 resulted in dramatic exposure of basal, membrane-proximal gp41 epitopes, consistent with its predicted basal location. The structural features of HIV-1 Env characterized here provide grounds for a paradigm shift in loop exposure and epitope occlusion, while providing substantive rationale for epitope display required for elicitation of broadly neutralizing antibodies, as well as substantiating previous pertinent literature disregarded in recent reports. [ABSTRACT FROM AUTHOR]
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- 2014
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40. Systemic neutralizing antibodies induced by long interval mucosally primed systemically boosted immunization correlate with protection from mucosal SHIV challenge
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Herman Oostermeijer, Zahra Fagrouch, Ilona Baak, David Davis, Elaine Kan, Indresh K. Srivastava, Rob Dubbes, Jonathan L. Heeney, Petra Mooij, Willy M. J. M. Bogers, Martin van der Maas, Susan W. Barnett, Ernst J. Verschoor, Jun Zhao, Sam O. Hofman, Johannes P. M. Langedijk, Daniella Mortier, Gerrit Koopman, Marjorie Robert-Guroff, Egidio Brocca-Cofano, Ying Lian, and Yide Sun
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Male ,HIV vaccine ,viruses ,Simian Acquired Immunodeficiency Syndrome ,Priming (immunology) ,HIV Infections ,HIV Antibodies ,medicine.disease_cause ,Antibodies, Viral ,Antibody-dependent cell-mediated cytotoxicity ,AIDS Vaccines ,0303 health sciences ,Immunity, Cellular ,SAIDS Vaccines ,virus diseases ,3. Good health ,Titer ,Female ,Simian Immunodeficiency Virus ,Antibody ,ADCC ,Immunization, Secondary ,Heterologous ,Viremia ,Biology ,Genes, env ,Article ,03 medical and health sciences ,Neutralization Tests ,Virology ,medicine ,Animals ,Animal model ,Nabs ,Immunity, Mucosal ,Immunization Schedule ,030304 developmental biology ,Mucosal challenge ,Base Sequence ,030306 microbiology ,Simian immunodeficiency virus ,medicine.disease ,Macaca mulatta ,Immunology ,DNA, Viral ,biology.protein ,HIV-1 - Abstract
Immune correlates of vaccine protection from HIV-1 infection would provide important milestones to guide HIV-1 vaccine development. In a proof of concept study using mucosal priming and systemic boosting, the titer of neutralizing antibodies in sera was found to correlate with protection of mucosally exposed rhesus macaques from SHIV infection. Mucosal priming consisted of two sequential immunizations at 12-week intervals with replicating host range mutants of adenovirus type 5 (Ad5hr) expressing the HIV-189.6p env gene. Following boosting with either heterologous recombinant protein or alphavirus replicons at 12-week intervals animals were intrarectally exposed to infectious doses of the CCR5 tropic SHIVSF162p4. Heterologous mucosal prime systemic boost immunization elicited neutralizing antibodies (Nabs), antibody-dependent cytotoxicity (ADCC), and specific patterns of antibody binding to envelope peptides. Vaccine induced protection did not correlate with the type of boost nor T-cell responses, but rather with the Nab titer prior to exposure.
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41. Antibody-Mediated Protection against Mucosal Simian-Human Immunodeficiency Virus Challenge of Macaques Immunized with Alphavirus Replicon Particles and Boosted with Trimeric Envelope Glycoprotein in MF59 Adjuvant.
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Barnett, Susan W., Burke, Brian, Yide Sun, Kan, Elaine, Legg, Harold, Ying Lian, Bost, Kristen, Fengmin Zhou, Goodsell, Amanda, zur Megede, Jan, Polo, John, Donnelly, John, Ulmer, Jeffrey, Otten, Gillis R., Miller, Christopher J., Vajdy, Michael, and Srivastava, Indresh K.
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- *
RHESUS monkeys , *HIV , *ANIMAL models in research , *IMMUNIZATION , *ENCEPHALITIS viruses - Abstract
We have previously shown that rhesus macaques were partially protected against high-dose intravenous challenge with simian-human immunodeficiency virus SHIVSF162P4 following sequential immunization with alphavirus replicon particles (VRP) of a chimeric recombinant VEE/SIN alphavirus (derived from Venezuelan equine encephalitis virus [VEE] and the Sindbis virus [SIN]) encoding human immunodeficiency virus type 1 HIV-1SF162 gp140ΔV2 envelope (Env) and trimeric Env protein in MF59 adjuvant (R. Xu, I. K. Srivastava, C. E. Greer, I. Zarkikh, Z. Kraft, L. Kuller, J. M. Polo, S. W. Barnett, and L. Stamatatos, AIDS Res. Hum. Retroviruses 22:1022-1030, 2006). The protection did not require T-cell immune responses directed toward simian immunodeficiency virus (SIV) Gag. We extend those findings here to demonstrate antibody-mediated protection against mucosal challenge in macaques using prime-boost regimens incorporating both intramuscular and mucosal routes of delivery. The macaques in the vaccination groups were primed with VRP and then boosted with Env protein in MF59 adjuvant, or they were given VRP intramuscular immunizations alone and then challenged with SHIVSF162P4 (intrarectal challenge). The results demonstrated that these vaccines were able to effectively protect the macaques to different degrees against subsequent mucosal SHIV challenge, but most noteworthy, all macaques that received the intramuscular VRP prime plus Env protein boost were completely protected. A statistically significant association was observed between the titer of virus neutralizing and binding antibodies as well as the avidity of anti-Env antibodies measured prechallenge and protection from infection. These results highlight the merit of the alphavirus replicon vector prime plus Env protein boost vaccine approach for the induction of protective antibody responses and are of particular relevance to advancing our understanding of the potential correlates of immune protection against HIV infection at a relevant mucosal portal of entry. [ABSTRACT FROM AUTHOR]
- Published
- 2010
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42. Stabilization of HIV-1 Envelope in the CD4-bound Conformation through Specific Cross-linking of a CD4 Mimetic.
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Martin, Grégoire, Burke, Brian, Thaï, Robert, Dey, Antu K., Combes, Olivier, Heyd, Bernadette, Geonnotti, Anthony R., Montefiori, David C., Kan, Elaine, Ying Lian, Yide Sun, Abache, Toufik, Ulmer, Jeffrey B., Madaoui, Hocine, Guérois, Raphaël, Barnett, Susan W., Srivastava, Indresh K., Kessler, Pascal, and Martin, Loïc
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- *
BIOCHEMICAL research , *HIV infections , *IMMUNOGLOBULINS , *PREVENTIVE medicine , *MATHEMATICAL transformations , *LINE geometry - Abstract
CD4 binding on gp120 leads to the exposure of highly conserved regions recognized by the HIV co-receptor CCR5 and by CD4-induced (CD4i) antibodies. A covalent gp120-CD4 complex was shown to elicit CD4i antibody responses in monkeys, which was correlated with control of the HIV virus infection (DeVico, A., Fouts, T., Lewis, G. K., Gallo, R. C., Godfrey, K., Charurat, M., Harris, I., Galmin, L., and Pal, R. (2007) Proc. Natl. Acad. Sci. U.S.A. 104, 17477-17482). Because the inclusion of CD4 in a vaccine formulation should be avoided, due to potential autoimmune reactions, we engineered small sized CD4 mimetics (miniCD4s) that are poorly immunogenic and do not induce anti-CD4 antibodies. We made covalent complexes between such an engineered miniCD4 and gp120 or gp140, through a site-directed coupling reaction. These complexes were recognized by CD4i antibodies as well as by the HIV co-receptor CCR5. In addition, they elicit CD4i antibody responses in rabbits and therefore represent potential vaccine candidates that mimic an important HIV fusion intermediate, without autoimmune hazard. [ABSTRACT FROM AUTHOR]
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- 2011
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43. Evaluation of Envelope Vaccines Derived from the South African Subtype C Human Immunodeficiency Virus Type 1 TV1 Strain.
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Ying Lian, Srivastava, Indresh, V. Rául Gómez-Román, Megede, Jan zur, Yide Sun, Kan, Elaine, Hilt, Susan, Engelbrecht, Susan, Himathongkham, Sunee, Luciw, Paul A., Otten, Gillis, Ulmer, Jeffrey B., Donnelly, John J., Rabussay, Dietmar, Montefiori, David, van Rensburg, Estrelita Janse, and Barnett, Susan W.
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HIV , *DNA vaccines , *AIDS vaccines , *VIRAL vaccines , *IMMUNOLOGICAL adjuvants , *HIV infections , *VACCINES - Abstract
Human immunodeficiency virus type 1 (HIV-1) subtype C infections are on the rise in Sub-Saharan Africa and Asia. Therefore, there is a need to develop an HIV vaccine capable of eliciting broadly reactive immune responses against members of this subtype. We show here that modified HIV envelope (env) DNA vaccines derived from the South African subtype C TV1 strain are able to prime for humoral responses in rabbits and rhesus macaques. Priming rabbits with DNA plasmids encoding V2-deleted TV1 gp140 (gp140TV1ΔV2), followed by boosting with oligomeric protein (o-gp140TV1ΔV2) in MF59 adjuvant, elicited higher titers of env-binding and autologous neutralizing antibodies than priming with DNA vaccines encoding the full-length TV1 env (gp160) or the intact TV1 gp140. Immunization with V2-deleted subtype B SF162 env and V2-deleted TV1 env together using a multivalent vaccine approach induced high titers of oligomeric env-binding antibodies and autologous neutralizing antibodies against both the subtypes B and C vaccine strains, HIV-1 SF162 and TV1, respectively. Low-level neutralizing activity against the heterologous South African subtype C TV2 strain, as well as a small subset of viruses in a panel of 13 heterologous primary isolates, was observed in some rabbits immunized with the V2-deleted vaccines. Immunization of rhesus macaques with the V2-deleted TV1 DNA prime/protein boost also elicited high titers of env-binding antibodies and moderate titers of autologous TV1 neutralizing antibodies. The pilot-scale production of the various TV1 DNA vaccine constructs and env proteins described here should provide an initial platform upon which to improve the immunogenicity of these subtype C HIV envelope vaccines. [ABSTRACT FROM AUTHOR]
- Published
- 2005
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