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The power system using hydrogen fuel cells (FCs) as the primary energy source holds significant potential for applications in emergency fields such as post-disaster relief and outdoor power supply. The operational environment of the FC emergency power supply system (FCEPSS) is challenging, with long continuous operation time, difficulties in hydrogen supply, high maintenance costs, and, accordingly, requirements for hydrogen consumption and useful life of FCs are heightened. Hence, this paper proposes a multi-objective energy management strategy (EMS) for FCEPSS. First, the structure of FCEPSS is designed based on the demand analysis in emergency scenarios. Then, the hydrogen consumption and life degradation models of FCEPSS are established. Aiming at the multi-objective optimization problem of minimizing hydrogen consumption and life degradation value in the FCEPSS, an improved multi-objective optimization algorithm is proposed. This paper converts complex constraints into the penalty term and incorporates it as one of the objectives, constructing a three-objective optimization model. To enhance the solution of multi-objective optimization problems, an improved strategy based on relaxation-tightening and three-objective sorting is proposed. Combining the fast non-dominated sorting genetic algorithm-II and the above improved strategy, an improved multi-objective optimization algorithm (IMOOA) is constructed. In the simulation, the advantages of the proposed IMOOA algorithm are verified. In the experimental part, compared with the logical threshold strategy, the proposed strategy saves 0.60% of hydrogen consumption and reduces 5.65% of life degradation within 24 h, respectively. Finally, the superiority of the multi-objective EMS utilizing the IMOOA is demonstrated. [Display omitted] • The demand analysis and scheme design of fuel cell emergency power supply system are carried out. • A multi-objective energy management strategy for low hydrogen consumption and long useful life is designed. • An algorithm based on the relaxation-tightening and three-sorting principle is constructed. [ABSTRACT FROM AUTHOR]