22 results on '"Yuka Sakata"'
Search Results
2. Friction Dynamics of Human Skin Treated using Polymer Aqueous Solutions.
- Author
-
Rio Kikuchi, Yuka Sakata, and Yoshimune Nonomura
- Subjects
POLYMER solutions ,OCCLUSION effect ,OINTMENTS ,TREATMENT effectiveness ,YIELD stress - Abstract
Herein, we evaluated friction dynamics of human skin treated with polyacrylic acid aqueous solutions or gel creams using a sinusoidal motion friction evaluation system to demonstrate the effect of treatment with polymer aqueous solutions on human skin. A polymer aqueous solution or gel cream was applied to the inner forearms of 10 subjects to evaluate temporal changes in friction force under sinusoidal motion. Water content, skin viscoelasticity, and transepidermal water loss were also simultaneously measured to determine the effects on skin conditions. When human skin was treated with the polymer aqueous solution, the friction coefficient immediately after treatment was 0.69–0.99 and the delay time δ, a normalized parameter of the time difference in the delayed response of friction to the movement of the contact probe divided by the friction time T
0 for one round trip, was 0.171–0.179, which was greater than that of untreated skin. This increase was caused by the swelling and softening of the stratum corneum caused by the penetration of water in the polymer aqueous solution, which increased true contact area between the skin and contact probe. A significant difference was observed in the friction coefficient of the skin immediately after treatment with different polymer aqueous solutions. Among polymers (P1–P4), P4, which has a low-salt resistance and low yield stress, had the lowest friction coefficient because of collapsing of the polymer network structures by shearing and reduced viscosity owing to salts on human skin. The skin treated with a gel cream also exhibited a greater friction coefficient than the untreated skin immediately after treatment and 90 min later. This phenomenon can be caused by the occlusive effect of the oil in the gel cream. [ABSTRACT FROM AUTHOR]- Published
- 2024
- Full Text
- View/download PDF
3. Nanosheet coating improves stability of human pluripotent stem cell culture on glass substrates
- Author
-
Yuka Sakata, Hong Zhang, Akiko Sugiyama, Nami Motosugi, Hiroshi Kimura, Yosuke Okamura, and Atsushi Fukuda
- Subjects
Biophysics ,Cell Biology ,Molecular Biology ,Biochemistry - Published
- 2023
- Full Text
- View/download PDF
4. Friction Dynamics of Human Skin Treated with Oil under Nonlinear Motion.
- Author
-
Yuka Sakata, Hiroyuki Mayama, and Yoshimune Nonomura
- Subjects
ELASTOHYDRODYNAMIC lubrication ,HUMAN beings ,FRICTION - Abstract
Moisturization causes physiological changes that improve the barrier function of human skin and mechanical changes, including skin friction characteristics. This study evaluated petrolatum-or silicone oiltreated human skin to determine the effect of moisturizing on the friction dynamics. The friction force on the human skin was measured using a contact probe with a sinusoidal motion. The contact probe was used to rub the skin of the upper arm of 20 subjects. The water content of the stratum corneum, softness, and barrier function of the skin were measured using a corneometer, cutometer, and tewameter, respectively. Both oils reduce the frictional force on the human skin. Simultaneously, silicone oil also reduced the delay time d, which is the standardized time difference between the frictional force response to contact probe movement. Three typical friction patterns were also discovered, which were significantly changed by the treatment with oil. These changes were attributed to the lubrication effect and elimination of adhesion at the true contact point between the skin and the contact probe. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
5. Neurochemistry evaluated by MR spectroscopy in a patient with SPTAN1-related developmental and epileptic encephalopathy
- Author
-
Yuka Sakata, Kentaro Sano, Shintaro Aoki, Hirotomo Saitsu, and Jun-ichi Takanashi
- Subjects
Developmental Neuroscience ,Pediatrics, Perinatology and Child Health ,Neurology (clinical) ,General Medicine - Published
- 2022
- Full Text
- View/download PDF
6. Friction dynamics of moisturized human skin under non‐linear motion
- Author
-
Yuka Sakata, Yoshimune Nonomura, and Hiroyuki Mayama
- Subjects
musculoskeletal diseases ,Aging ,Materials science ,Friction ,Pharmaceutical Science ,Human skin ,Cosmetics ,Dermatology ,Viscoelasticity ,Colloid and Surface Chemistry ,Body Water ,Drug Discovery ,Stratum corneum ,medicine ,Humans ,Composite material ,Softening ,Skin ,Aqueous solution ,integumentary system ,Oscillation ,body regions ,medicine.anatomical_structure ,Chemistry (miscellaneous) ,Epidermis ,Swelling ,medicine.symptom ,Contact area ,human activities - Abstract
Evaluating friction in human skin is important to assess its condition and the effects of skincare cosmetics. In this study, we evaluated the friction dynamics of moisturized skin to show the effects of moisturization on its mechanical properties.Friction force was evaluated using a sinusoidal motion friction evaluation system. The skin of the upper arm of 20 subjects was rubbed using a contact probe. The water content of the stratum corneum and the softness of the skin were measured using a Corneometer and a Cutometer, respectively.When human skin was treated with water or 10 wt% glycerol aqueous solution, the friction coefficients increased by 0.23 ± 0.01 and 0.17 ± 0.14, respectively, and the delay times (normalized by calculating the time interval from contact with the probe to the friction response divided by the friction time for one round trip) increased by 0.048 ± 0.034 and 0.055 ± 0.024, respectively. Three different friction profiles were observed: (a) a stable pattern, in which a smooth profile was observed during the sliding process; (b) an oscillation pattern, in which significant oscillation was obtained; and (c) a stick pattern, in which the friction coefficient increased even during the deceleration process. In the case of untreated skin, the oscillation pattern was observed for the majority of subjects. The appearance rate of the stick pattern increased by 80.3% ± 29.4% after treatment with 10 wt% glycerol aqueous solution. These characteristic friction profiles can be explained by a two-step friction model consisting of two modes: (a) friction at the skin surface and (b) the delayed response due to skin deformation.Moisturizing the skin with water or 10 wt% glycerol aqueous solution increased the friction coefficient and delay time, dramatically changing the friction profile. These changes were considered to be due to the swelling and softening of the stratum corneum and the increased true contact area between the contact probe and the skin surface.Une évaluation des effets de la friction sur la peau humaine demeure importante dans le but de juger de l'état de la peau ou de l'efficacité des produits cosmétiques pour les soins de la peau. Dans cette étude, nous avons évalué les propriétés d'une peau hydratée soumise à une friction afin d'identifier les effets de l'hydratation sur les propriétés mécaniques de la peau. MÉTHODE: Les forces de friction ont été évaluées grâce à un système d'évaluation du frottement par mouvement sinusoïdal. Une sonde de contact a été utilisée pour frotter la peau sur le haut du bras de 20 participants. La teneur en eau de la couche cornée et la souplesse de la peau ont été mesurées respectivement à l'aide d'un cornéomètre et d'un cutomètre. RÉSULTAT: Le traitement de la peau humaine avec de l'eau ou une solution de glycérol à 10% a entraîné une augmentation du coefficient de friction respectivement de 0.23 ± 0.01 et de 0.17 ± 0.14, ainsi que du délai de réaction (normalisé en divisant l'intervalle de temps entre le contact avec la sonde jusqu’à l'apparition de la réaction à la friction, par le temps de friction pour un aller-retour), de 0.048 ± 0.034 et de 0.055 ± 0.024. Trois profils de friction différents ont également été observés : (1) un modèle stable, (2) un modèle avec une grande oscillation, et (3) un modèle « collé-glissé » où le coefficient de friction augmente même pendant la décélération. Lorsque la peau est sèche, le modèle oscillant a été observé chez la majorité des participants. Le taux d'apparition du modèle « collé-glissé » a augmenté de 80.3 ± 29.4% dans le cas où la peau a été traitée avec une solution de glycérol à 10%. Ces profils caractéristiques de friction ont pu être expliqués à partir d'un modèle de friction composé de deux modes, (a) une friction à la surface de la peau et (b) un délai de réaction dû à la déformation de la peau.L'hydratation de la peau avec de l'eau ou une solution de glycérol à 10% a considérablement modifié le profil de friction en raison d'une augmentation du coefficient de friction et du délai de réaction. Nous avons estimé que ces changements sont relatifs au gonflement et à l'assouplissement de la couche cornée, engendrant une augmentation de la surface de contact réel entre la sonde de contact et la surface de la peau.
- Published
- 2021
- Full Text
- View/download PDF
7. Reconstitution of prospermatogonial specification in vitro from human induced pluripotent stem cells
- Author
-
Brian P. Hermann, Yasunari Seita, Yuka Sakata, Shinnosuke Suzuki, Kotaro Sasaki, Young Hwang, Jumpei Ito, Hirofumi Aso, and Kei Sato
- Subjects
0301 basic medicine ,Epigenomics ,Male ,Embryonic Germ Cells ,endocrine system ,Lineage (genetic) ,Cellular differentiation ,Transcriptional regulatory elements ,Science ,Cell ,Induced Pluripotent Stem Cells ,General Physics and Astronomy ,Biology ,General Biochemistry, Genetics and Molecular Biology ,Germline ,Article ,Transcriptome ,03 medical and health sciences ,Mice ,0302 clinical medicine ,Testis ,medicine ,Animals ,Humans ,Regulatory Elements, Transcriptional ,lcsh:Science ,Spermatogenesis ,reproductive and urinary physiology ,Regulation of gene expression ,Mice, Inbred ICR ,Multidisciplinary ,Sequence Analysis, RNA ,urogenital system ,Gene Expression Regulation, Developmental ,RNA sequencing ,Cell Differentiation ,General Chemistry ,Spermatozoa ,Spermatogonia ,Cell biology ,030104 developmental biology ,medicine.anatomical_structure ,lcsh:Q ,Female ,030217 neurology & neurosurgery - Abstract
Establishment of spermatogonia throughout the fetal and postnatal period is essential for production of spermatozoa and male fertility. Here, we establish a protocol for in vitro reconstitution of human prospermatogonial specification whereby human primordial germ cell (PGC)-like cells differentiated from human induced pluripotent stem cells are further induced into M-prospermatogonia-like cells and T1 prospermatogonia-like cells (T1LCs) using long-term cultured xenogeneic reconstituted testes. Single cell RNA-sequencing is used to delineate the lineage trajectory leading to T1LCs, which closely resemble human T1-prospermatogonia in vivo and exhibit gene expression related to spermatogenesis and diminished proliferation, a hallmark of quiescent T1 prospermatogonia. Notably, this system enables us to visualize the dynamic and stage-specific regulation of transposable elements during human prospermatogonial specification. Together, our findings pave the way for understanding and reconstructing human male germline development in vitro., Spermatogonia establishment in the fetal and postnatal period is essential for spermatozoa production. Here the authors present a protocol for in vitro reconstitution of human prospermatogonial specification and perform single cell RNA-sequencing to delineate lineage trajectories.
- Published
- 2020
8. The developmental origin and the specification of the adrenal cortex in humans and cynomolgus monkeys
- Author
-
Keren Cheng, Yasunari Seita, Taku Moriwaki, Kiwamu Noshiro, Yuka Sakata, Young Sun Hwang, Toshihiko Torigoe, Mitinori Saitou, Hideaki Tsuchiya, Chizuru Iwatani, Masayoshi Hosaka, Toshihiro Ohkouchi, Hidemichi Watari, Takeshi Umazume, and Kotaro Sasaki
- Subjects
endocrine system ,Multidisciplinary - Abstract
Development of the adrenal cortex, a vital endocrine organ, originates in the adrenogonadal primordium, a common progenitor for both the adrenocortical and gonadal lineages in rodents. In contrast, we find that in humans and cynomolgus monkeys, the adrenocortical lineage originates in a temporally and spatially distinct fashion from the gonadal lineage, arising earlier and more anteriorly within the coelomic epithelium. The adrenal primordium arises from adrenogenic coelomic epithelium via an epithelial-to- mesenchymal-like transition, which then progresses into the steroidogenic fetal zone via both direct and indirect routes. Notably, we find that adrenocortical and gonadal lineages exhibit distinct HOX codes, suggesting distinct anterior-posterior regionalization. Together, our assessment of the early divergence of these lineages provides a molecular framework for understanding human adrenal and gonadal disorders.One Sentence SummarySpecification of the adrenal cortex occurs in adrenogenic coelomic epithelium independent of gonadogenesis in humans and cynomolgus monkeys
- Published
- 2022
- Full Text
- View/download PDF
9. Reconstitution of human adrenocortical specification and steroidogenesis using induced pluripotent stem cells
- Author
-
Yuka Sakata, Keren Cheng, Michinori Mayama, Yasunari Seita, Andrea J. Detlefsen, Clementina A. Mesaros, Trevor M. Penning, Kyosuke Shishikura, Wenli Yang, Richard J. Auchus, Jerome F. Strauss, and Kotaro Sasaki
- Subjects
Adrenocorticotropic Hormone ,Induced Pluripotent Stem Cells ,Adrenal Cortex ,Humans ,Steroids ,Cell Biology ,Wnt Signaling Pathway ,Molecular Biology ,Article ,General Biochemistry, Genetics and Molecular Biology ,Developmental Biology - Abstract
The mechanisms leading to adrenal cortex development and steroid synthesis in humans remain poorly understood due to the paucity of model systems. Herein, we faithfully recapitulate human fetal adrenal cortex specification processes through stepwise induction of human induced pluripotent stem cells through posterior intermediate mesoderm-like and adrenal progenitor-like states to ultimately generate fetal zone adrenal cortex-like cells (FZLCs), as evidenced by histomorphological, ultrastructural, and transcriptome features and adrenocorticotropic hormone (ACTH)-independent Δ5 steroid biosynthesis. Furthermore, FZLC generation is promoted by SHH and inhibited by NOTCH, ACTIVIN and WNT signaling, and that steroid synthesis is amplified by ACTH/PKA signaling and blocked by inhibitors of Δ5 steroid synthesis enzymes. Finally, NR5A1 promotes FZLC survival and steroidogenesis. Together, these findings provide a framework for understanding and reconstituting human adrenocortical development in vitro paving the way for cell-based therapies of adrenal insufficiency.
- Published
- 2022
- Full Text
- View/download PDF
10. Ribosomal protein L5 facilitates rDNA-bundled condensate and nucleolar assembly
- Author
-
Haruka Matsumori, Kenji Watanabe, Hiroaki Tachiwana, Tomoko Fujita, Yuma Ito, Makio Tokunaga, Kumiko Sakata-Sogawa, Hiroko Osakada, Tokuko Haraguchi, Akinori Awazu, Hiroshi Ochiai, Yuka Sakata, Koji Ochiai, Tsutomu Toki, Etsuro Ito, Ilya G Goldberg, Kazuaki Tokunaga, Mitsuyoshi Nakao, and Noriko Saitoh
- Subjects
Ribosomal Proteins ,Ecology ,Health, Toxicology and Mutagenesis ,Humans ,Plant Science ,Biochemistry, Genetics and Molecular Biology (miscellaneous) ,DNA, Ribosomal ,Cell Nucleolus - Abstract
The nucleolus is the site of ribosome assembly and formed through liquid–liquid phase separation. Multiple ribosomal DNA (rDNA) arrays are bundled in the nucleolus, but the underlying mechanism and significance are unknown. In the present study, we performed high-content screening followed by image profiling with the wndchrm machine learning algorithm. We revealed that cells lacking a specific 60S ribosomal protein set exhibited common nucleolar disintegration. The depletion of RPL5 (also known as uL18), the liquid–liquid phase separation facilitator, was most effective, and resulted in an enlarged and un-separated sub-nucleolar compartment. Single-molecule tracking analysis revealed less-constrained mobility of its components. rDNA arrays were also unbundled. These results were recapitulated by a coarse-grained molecular dynamics model. Transcription and processing of ribosomal RNA were repressed in these aberrant nucleoli. Consistently, the nucleoli were disordered in peripheral blood cells from a Diamond–Blackfan anemia patient harboring a heterozygous, large deletion in RPL5. Our combinatorial analyses newly define the role of RPL5 in rDNA array bundling and the biophysical properties of the nucleolus, which may contribute to the etiology of ribosomopathy.
- Published
- 2021
11. Reconstitution of prospermatogonial specification in vitro from human induced pluripotent stem cells
- Author
-
Hirofumi Aso, Yuka Sakata, Jumpei Ito, Yasunari Seita, Kei Sato, Kotaro Sasaki, Shinnosuke Suzuki, Young Hwang, and Brian P. Hermann
- Subjects
Fetus ,Lineage (genetic) ,medicine.anatomical_structure ,In vivo ,Gene expression ,Cell ,medicine ,Biology ,Spermatogenesis ,In vitro ,Germline ,Cell biology - Abstract
Establishment of spermatogonia throughout the fetal and postnatal period is essential for production of spermatozoa and male fertility. Here, we established a protocol for in vitro reconstitution of human prospermatogonial specification whereby human primordial germ cell (PGC)-like cells (hPGCLCs) differentiated from human induced pluripotent stem cells were further induced into M-prospermatogonia-like cells (MLCs) and T1 prospermatogonia-like cells (T1LCs) using long-term cultured xenogeneic reconstituted testes. Single cell RNA-sequencing was used to delineate the lineage trajectory leading to T1LCs, which closely resemble human T1-prospermatogonia in vivo and exhibited gene expression related to spermatogenesis and diminished proliferation, a hallmark of quiescent T1 prospermatogonia. Notably, this system enabled us to visualize the dynamic and stage-specific regulation of transposable elements during human prospermatogonial specification. Together, our findings pave the way for understanding and reconstructing human male germline development in vitro.
- Published
- 2020
- Full Text
- View/download PDF
12. Ribosomal protein L5 facilitates rDNA-bundled condensate and nucleolar assembly.
- Author
-
Haruka Matsumori, Kenji Watanabe, Hiroaki Tachiwana, Tomoko Fujita, Yuma Ito, Makio Tokunaga, Kumiko Sakata-Sogawa, Hiroko Osakada, Tokuko Haraguchi, Akinori Awazu, Hiroshi Ochiai, Yuka Sakata, Koji Ochiai, Tsutomu Toki, Etsuro Ito, Goldberg, Ilya G., Kazuaki Tokunaga, Mitsuyoshi Nakao, and Noriko Saitoh
- Published
- 2022
- Full Text
- View/download PDF
13. Nucleosome destabilization by nuclear non-coding RNAs
- Author
-
Reo Maruyama, Risa Fujita, Michiaki Hamada, Tatsuro Yamamoto, Mitsuyoshi Nakao, Hitoshi Kurumizaka, Noriko Saitoh, Yuichi Ichikawa, Hiroaki Tachiwana, Yasuhiro Arimura, Liying Yang, Saori Fujiwara, and Yuka Sakata
- Subjects
RNA, Untranslated ,Medicine (miscellaneous) ,Biochemical assays ,General Biochemistry, Genetics and Molecular Biology ,Article ,Cell Line ,Histones ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Chromatin analysis ,Transcription (biology) ,Transcriptional regulation ,Nucleosome ,Humans ,lcsh:QH301-705.5 ,Gene ,In Situ Hybridization, Fluorescence ,030304 developmental biology ,Cell Nucleus ,0303 health sciences ,biology ,Chemistry ,Protein Stability ,Fluorescence in situ hybridization ,RNA ,Chromatin Assembly and Disassembly ,Chromatin ,Cell biology ,Nucleosomes ,Histone ,lcsh:Biology (General) ,Genetic Loci ,biology.protein ,Long non-coding RNAs ,Nucleic Acid Conformation ,General Agricultural and Biological Sciences ,030217 neurology & neurosurgery ,DNA - Abstract
In the nucleus, genomic DNA is wrapped around histone octamers to form nucleosomes. In principle, nucleosomes are substantial barriers to transcriptional activities. Nuclear non-coding RNAs (ncRNAs) are proposed to function in chromatin conformation modulation and transcriptional regulation. However, it remains unclear how ncRNAs affect the nucleosome structure. Eleanors are clusters of ncRNAs that accumulate around the estrogen receptor-α (ESR1) gene locus in long-term estrogen deprivation (LTED) breast cancer cells, and markedly enhance the transcription of the ESR1 gene. Here we detected nucleosome depletion around the transcription site of Eleanor2, the most highly expressed Eleanor in the LTED cells. We found that the purified Eleanor2 RNA fragment drastically destabilized the nucleosome in vitro. This activity was also exerted by other ncRNAs, but not by poly(U) RNA or DNA. The RNA-mediated nucleosome destabilization may be a common feature among natural nuclear RNAs, and may function in transcription regulation in chromatin., The Eleanor cluster of non-coding RNAs is localised upstream of estrogen receptor-α (ESR1) gene locus in estrogen-deprived breast cancer cells. Fujita et al find that RNA fragments of Eleanor2 and of other non-coding RNAs are able to destabilise nucleosomes in vitro, suggesting a role in transcriptional regulation.
- Published
- 2020
14. RNA-FISH and Immunofluorescence of Mouse Preimplantation and Postimplantation Embryos
- Author
-
Hirosuke, Shiura, Yuka, Sakata, Kuniya, Abe, and Takashi, Sado
- Subjects
Epigenomics ,Mice ,X Chromosome Inactivation ,Animals ,Embryonic Development ,Gene Expression Regulation, Developmental ,RNA, Long Noncoding ,Embryo, Mammalian ,In Situ Hybridization, Fluorescence - Abstract
There are two modes of X chromosome inactivation (XCI) in the mouse. One mode is imprinted XCI: it is initiated at around the four-cell stage in favor of the paternal X chromosome, and is maintained in the extraembryonic tissues. The other mode is random XCI, which takes place in the epiblast lineage at the periimplantation stage. X-linked noncoding Xist RNA, which becomes upregulated on the X chromosome to be inactivated at the onset of XCI and plays a critical role in both imprinted and random XCI, and its accumulation in the nucleus have been referred to as one of the hallmarks of the presence of the inactivated X chromosome. RNA-FISH has therefore been an invaluable method for the study of XCI. As XCI status changes dynamically during periimplantation development in the mouse, analysis using samples from these developmental stages is absolutely necessary for elucidation of the molecular basis of XCI mechanisms. However, dissection of the embryos at around the periimplantation stages is not easy, and this impedes in vivo analysis of the kinetics of XCI. Here, we describe our methods for dissecting the periimplantation stage embryo and subsequent procedures for RNA-FISH and immunostaining.
- Published
- 2018
15. RNA-FISH and Immunofluorescence of Mouse Preimplantation and Postimplantation Embryos
- Author
-
Kuniya Abe, Hirosuke Shiura, Yuka Sakata, and Takashi Sado
- Subjects
0301 basic medicine ,medicine.diagnostic_test ,RNA ,Embryo ,030105 genetics & heredity ,Biology ,Immunofluorescence ,X-inactivation ,Cell biology ,03 medical and health sciences ,030104 developmental biology ,Epiblast ,medicine ,XIST ,Immunostaining ,X chromosome - Abstract
There are two modes of X chromosome inactivation (XCI) in the mouse. One mode is imprinted XCI: it is initiated at around the four-cell stage in favor of the paternal X chromosome, and is maintained in the extraembryonic tissues. The other mode is random XCI, which takes place in the epiblast lineage at the periimplantation stage. X-linked noncoding Xist RNA, which becomes upregulated on the X chromosome to be inactivated at the onset of XCI and plays a critical role in both imprinted and random XCI, and its accumulation in the nucleus have been referred to as one of the hallmarks of the presence of the inactivated X chromosome. RNA-FISH has therefore been an invaluable method for the study of XCI. As XCI status changes dynamically during periimplantation development in the mouse, analysis using samples from these developmental stages is absolutely necessary for elucidation of the molecular basis of XCI mechanisms. However, dissection of the embryos at around the periimplantation stages is not easy, and this impedes in vivo analysis of the kinetics of XCI. Here, we describe our methods for dissecting the periimplantation stage embryo and subsequent procedures for RNA-FISH and immunostaining.
- Published
- 2018
- Full Text
- View/download PDF
16. Defects in dosage compensation impact global gene regulation in the mouse trophoblast
- Author
-
Takashi Sado, Hiroyuki Sasaki, Yuka Sakata, Chikashi Obuse, Koji Nagao, and Yuko Hoki
- Subjects
0301 basic medicine ,X Chromosome ,Fluorescent Antibody Technique ,Biology ,X-inactivation ,Mice ,03 medical and health sciences ,0302 clinical medicine ,X Chromosome Inactivation ,Dosage Compensation, Genetic ,Gene expression ,Animals ,Gene silencing ,Molecular Biology ,Skewed X-inactivation ,Alleles ,Cells, Cultured ,Embryonic Stem Cells ,Genetics ,Regulation of gene expression ,Dosage compensation ,Gene Expression Regulation, Developmental ,RNA ,Trophoblasts ,030104 developmental biology ,Female ,XIST ,030217 neurology & neurosurgery ,Developmental Biology - Abstract
Xist RNA responsible for X inactivation is one of the most important epigenetic players for embryogenesis of female mammals. Of the several repeats conserved in Xist RNA, the A-repeat has been shown to be essential for its silencing function in differentiating ES cells. Here, we introduced a new Xist allele into the mouse, which produces mutated Xist RNA lacking the A-repeat (XistCAGΔ5'). XistCAGΔ5' RNA expressed in the embryo coated the X chromosome but failed to silence it. Although imprinted X inactivation was substantially compromised upon paternal transmission, allele-specific RNA-seq in the trophoblast revealed that XistCAGΔ5' RNA still retained some silencing ability. Furthermore, the failure of imprinted X inactivation had more significant impacts than expected on gene expression genome-wide. It is likely that dosage compensation is required for not only equalizing the X-linked gene expression between the sexes but also proper global gene regulation in differentiated female somatic cells.
- Published
- 2017
- Full Text
- View/download PDF
17. Incomplete X-inactivation initiated by a hypomorphic Xist allele in the mouse
- Author
-
Rieko Ikeda, Hiroyuki Sasaki, Kuniya Abe, Yuko Hoki, Yuka Sakata, Tatsuya Ohhata, Nathan Mise, and Takashi Sado
- Subjects
Male ,RNA, Untranslated ,Mutant ,Fluorescent Antibody Technique ,Biology ,medicine.disease_cause ,X-inactivation ,Mice ,X Chromosome Inactivation ,medicine ,Animals ,Molecular Biology ,Skewed X-inactivation ,Alleles ,In Situ Hybridization, Fluorescence ,X chromosome ,Oligonucleotide Array Sequence Analysis ,Genetics ,Mutation ,Reverse Transcriptase Polymerase Chain Reaction ,Gene targeting ,Blotting, Northern ,Targeted Mutation ,Female ,RNA, Long Noncoding ,XIST ,Developmental Biology - Abstract
X chromosome inactivation (X-inactivation) in female mammals is triggered by differential upregulation of the Xist gene on one of the two X chromosomes and subsequent coating of the X in cis with its non-coding transcripts. Although targeted mutation has clearly shown that Xist is essential for X-inactivation in cis, the molecular mechanism by which Xist RNA induces chromosome silencing is largely unknown. Here, we demonstrate that an Xist mutant generated previously in mouse by gene targeting, Xist IVS , is unique in that it partially retains the capacity to silence the X chromosome. Although Xist IVS is differentially upregulated and its mutated transcript coats the X chromosome in cis in embryonic and extra-embryonic tissues, X-inactivation thus initiated does not seem to be fully established. The state of such incomplete inactivation is probably unstable and the mutated X is apparently reactivated in a subset of extra-embryonic tissues and, perhaps, early epiblastic cells. Xist IVS , which can be referred to as a partial loss-of-function mutation, would provide an opportunity to dissect the molecular mechanism of Xist RNA-mediated chromosome silencing.
- Published
- 2011
- Full Text
- View/download PDF
18. A new Xist allele driven by a constitutively active promoter is dominated by Xist locus environment and exhibits the parent-of-origin effects
- Author
-
Tatsuo Fukagawa, Hiroyuki Sasaki, Yuko Amakawa, Yuko Hoki, Satoru Arata, Yuka Sakata, Seiji Shioda, and Takashi Sado
- Subjects
X Chromosome ,Inheritance Patterns ,Down-Regulation ,Locus (genetics) ,Biology ,X-inactivation ,Mice ,Fetus ,Oogenesis ,X Chromosome Inactivation ,Animals ,Allele ,Promoter Regions, Genetic ,Molecular Biology ,Skewed X-inactivation ,Alleles ,X chromosome ,Genetics ,Gene Expression Regulation, Developmental ,DNA Methylation ,Embryo, Mammalian ,Non-coding RNA ,Up-Regulation ,Blastocyst ,Germ Cells ,Phenotype ,Genetic Loci ,Mutation ,Female ,RNA, Long Noncoding ,XIST ,Tsix ,Developmental Biology - Abstract
The dosage difference of X-linked genes between the sexes in mammals is compensated for by genetic inactivation of one of the X chromosomes in XX females. A noncoding RNA transcribed from the Xist gene at the onset of X chromosome inactivation coats the X chromosome in cis and induces chromosome-wide heterochromatinization. Here, we report a new Xist allele (Xist(CAG)) driven by a CAG promoter, which is known to be constitutively active in many types of cells. The paternal transmission of Xist(CAG) resulted in the preferential inactivation of the targeted paternal X (Xp) not only in the extra-embryonic but also the embryonic lineage, whereas maternal transmission ended with embryonic lethality at the early postimplantation stage with a phenotype that resembled mutant embryos carrying a maternal deficiency in Tsix, an antisense negative regulator of Xist, in both sexes. Interestingly, we found that the upregulation of Xist(CAG) in preimplantation embryos temporally differed depending on its parental origin: its expression started at the 4- to 8-cell stages when paternally inherited, and Xist(CAG) was upregulated at the blastocyst stage when maternally inherited. This might indicate that the Xist locus on Xp is permissive to transcription, but the Xist locus on the maternal X (Xm) is not. We extrapolated from these findings that the maternal Xist allele might manifest a chromatin structure inaccessible by transcription factors relative to the paternal allele. This might underlie the mechanism for the maternal repression of Xist at the early cleavage stage when Tsix expression has not yet occurred on Xm.
- Published
- 2015
- Full Text
- View/download PDF
19. Defects in dosage compensation impact global gene regulation in the mouse trophoblast.
- Author
-
Yuka Sakata, Koji Nagao, Yuko Hoki, Hiroyuki Sasaki, Chikashi Obuse, and Takashi Sado
- Subjects
RNA ,EMBRYOLOGY - Abstract
Xist RNA, which is responsible for X inactivation, is a key epigenetic player in the embryogenesis of female mammals. Of the several repeats conserved in Xist RNA, the A-repeat has been shown to be essential for its silencing function in differentiating embryonic stem cells. Here, we introduced a new Xist allele into mouse that produces mutated Xist RNA lacking the A-repeat (Xist
CAGΔ5′ ). XistCAGΔ5′ RNA expressed in the embryo coated the X chromosome but failed to silence it. Although imprinted X inactivation was substantially compromised upon paternal transmission, allele-specific RNA-seq in the trophoblast revealed that XistCAGΔ5′ RNA still retained some silencing ability. Furthermore, the failure of imprinted X inactivation had more significant impacts than expected on genome-wide gene expression. It is likely that dosage compensation is required not only for equalizing X-linked gene expression between the sexes but also for proper global gene regulation in differentiated female somatic cells. [ABSTRACT FROM AUTHOR]- Published
- 2017
- Full Text
- View/download PDF
20. A new Xist allele driven by a constitutively active promoter is dominated by Xist locus environment and exhibits the parent-of-origin effects.
- Author
-
Yuko Amakawa, Yuka Sakata, Yuko Hoki, Satoru Arata, Seiji Shioda, Tatsuo Fukagawa, Hiroyuki Sasaki, and Takashi Sado
- Subjects
X chromosome ,SEX chromosomes ,Y chromosome ,CHROMATIN ,CHROMOSOMES - Abstract
The dosage difference of X-linked genes between the sexes in mammals is compensated for by genetic inactivation of one of the X chromosomes in XX females. A noncoding RNA transcribed from the Xist gene at the onset of X chromosome inactivation coats the X chromosome in cis and induces chromosome-wide heterochromatinization. Here, we report a new Xist allele (Xist
CAG ) driven by a CAG promoter, which is known to be constitutively active in many types of cells. The paternal transmission of XistCAG resulted in the preferential inactivation of the targeted paternal X (Xp) not only in the extra-embryonic but also the embryonic lineage, whereas maternal transmission ended with embryonic lethality at the early postimplantation stage with a phenotype that resembled mutant embryos carrying amaternal deficiency in Tsix, an antisense negative regulator of Xist, in both sexes. Interestingly, we found that the upregulation of XistCAG in preimplantation embryos temporally differed depending on its parental origin: its expression started at the 4- to 8-cell stages when paternally inherited, and XistCAG was upregulated at the blastocyst stage when maternally inherited. This might indicate that the Xist locus on Xp is permissive to transcription, but the Xist locus on the maternal X (Xm) is not.We extrapolated from these findings that the maternal Xist allele might manifest a chromatin structure inaccessible by transcription factors relative to the paternal allele. This might underlie the mechanism for the maternal repression of Xist at the early cleavage stage when Tsix expression has not yet occurred on Xm. [ABSTRACT FROM AUTHOR]- Published
- 2015
- Full Text
- View/download PDF
21. Design and Fabrication of a Flexible and Self-Supporting Supramolecular Film by Hierarchical Control of the Interaction between Hydrogen-Bonded Sheet Assemblies ( This work was partly supported by a Grant-in-Aid for Scientific Research (grant nos. 14045211 and 14350482) from the Ministry of Education, Science, Sports, and Culture, Japan. )
- Author
-
Isao Yoshikawa, Jun Li, Yuka Sakata, and Koji Araki
- Published
- 2004
- Full Text
- View/download PDF
22. The developmental origin and the specification of the adrenal cortex in humans and cynomolgus monkeys.
- Author
-
Cheng, Keren, Yasunari Seita, Taku Moriwaki, Kiwamu Noshiro, Yuka Sakata, Young Sun Hwang, Toshihiko Torigoe, Mitinori Saitou, Hideaki Tsuchiya, Chizuru Iwatani, Masayoshi Hosaka, Toshihiro Ohkouchi, Hidemichi Watari, Takeshi Umazume, and Kotaro Sasaki
- Subjects
- *
ADRENAL cortex , *KRA , *LIFE sciences , *GONADS , *HUMAN biology , *CYTOLOGY - Abstract
The article presents a study which explores the developmental origin and the specification of the adrenal cortex in humans and cynomolgus monkeys. It mentions about the development of the adrenal cortex, a vital endocrine organ, originates in the adrenogonadal primordium, a common progenitor for both the adrenocortical and gonadal lineages in rodents.
- Published
- 2022
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.