15 results on '"Yulin Chao"'
Search Results
2. Molecular basis of the inositol deacylase PGAP1 involved in quality control of GPI-AP biogenesis
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Jingjing Hong, Tingting Li, Yulin Chao, Yidan Xu, Zhini Zhu, Zixuan Zhou, Weijie Gu, Qianhui Qu, and Dianfan Li
- Subjects
Science - Abstract
Abstract The secretion and quality control of glycosylphosphatidylinositol-anchored proteins (GPI-APs) necessitates post-attachment remodeling initiated by the evolutionarily conserved PGAP1, which deacylates the inositol in nascent GPI-APs. Impairment of PGAP1 activity leads to developmental diseases in humans and fatality and infertility in animals. Here, we present three PGAP1 structures (2.66−2.84 Å), revealing its 10-transmembrane architecture and product-enzyme interaction details. PGAP1 holds GPI-AP acyl chains in an optimally organized, guitar-shaped cavity with apparent energetic penalties from hydrophobic-hydrophilic mismatches. However, abundant glycan-mediated interactions in the lumen counterbalance these repulsions, likely conferring substrate fidelity and preventing off-target hydrolysis of bulk membrane lipids. Structural and biochemical analyses uncover a serine hydrolase-type catalysis with atypical features and imply mechanisms for substrate entrance and product release involving a drawing compass movement of GPI-APs. Our findings advance the mechanistic understanding of GPI-AP remodeling.
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- 2024
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3. Structures of liganded glycosylphosphatidylinositol transamidase illuminate GPI-AP biogenesis
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Yidan Xu, Tingting Li, Zixuan Zhou, Jingjing Hong, Yulin Chao, Zhini Zhu, Ying Zhang, Qianhui Qu, and Dianfan Li
- Subjects
Science - Abstract
Abstract Many eukaryotic receptors and enzymes rely on glycosylphosphatidylinositol (GPI) anchors for membrane localization and function. The transmembrane complex GPI-T recognizes diverse proproteins at a signal peptide region that lacks consensus sequence and replaces it with GPI via a transamidation reaction. How GPI-T maintains broad specificity while preventing unintentional cleavage is unclear. Here, substrates- and products-bound human GPI-T structures identify subsite features that enable broad proprotein specificity, inform catalytic mechanism, and reveal a multilevel safeguard mechanism against its promiscuity. In the absence of proproteins, the catalytic site is invaded by a locally stabilized loop. Activation requires energetically unfavorable rearrangements that transform the autoinhibitory loop into crucial catalytic cleft elements. Enzyme-proprotein binding in the transmembrane and luminal domains respectively powers the conformational rearrangement and induces a competent cleft. GPI-T thus integrates various weak specificity regions to form strong selectivity and prevent accidental activation. These findings provide important mechanistic insights into GPI-anchored protein biogenesis.
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- 2023
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4. Correction: KLF4, a miR-32-5p targeted gene, promotes cisplatin-induced apoptosis by upregulating BIK expression in prostate cancer
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Lu Zhang, Xiaojie Li, Yulin Chao, Ruiping He, Junqiang Liu, Yi Yuan, Wenzhi Zhao, Chuanchun Han, and Xishuang Song
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Medicine ,Cytology ,QH573-671 - Published
- 2023
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5. Cryo-EM structure of the RuvAB-Holliday junction intermediate complex from Pseudomonas aeruginosa
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Xu Zhang, Zixuan Zhou, Lin Dai, Yulin Chao, Zheng Liu, Mingdong Huang, Qianhui Qu, and Zhonghui Lin
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homologous recombination ,DNA damage repair ,Holliday junction ,RuvA ,RuvB ,complex assembly ,Plant culture ,SB1-1110 - Abstract
Holliday junction (HJ) is a four-way structured DNA intermediate in homologous recombination. In bacteria, the HJ-specific binding protein RuvA and the motor protein RuvB together form the RuvAB complex to catalyze HJ branch migration. Pseudomonas aeruginosa (P. aeruginosa, Pa) is a ubiquitous opportunistic bacterial pathogen that can cause serious infection in a variety of host species, including vertebrate animals, insects and plants. Here, we describe the cryo-Electron Microscopy (cryo-EM) structure of the RuvAB-HJ intermediate complex from P. aeruginosa. The structure shows that two RuvA tetramers sandwich HJ at the junction center and disrupt base pairs at the branch points of RuvB-free HJ arms. Eight RuvB subunits are recruited by the RuvA octameric core and form two open-rings to encircle two opposite HJ arms. Each RuvB subunit individually binds a RuvA domain III. The four RuvB subunits within the ring display distinct subdomain conformations, and two of them engage the central DNA duplex at both strands with their C-terminal β-hairpins. Together with the biochemical analyses, our structure implicates a potential mechanism of RuvB motor assembly onto HJ DNA.
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- 2023
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6. Molecular insights into biogenesis of glycosylphosphatidylinositol anchor proteins
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Yidan Xu, Guowen Jia, Tingting Li, Zixuan Zhou, Yitian Luo, Yulin Chao, Juan Bao, Zhaoming Su, Qianhui Qu, and Dianfan Li
- Subjects
Science - Abstract
GPI-T catalyzes the committed step in GPI anchor protein biogenesis. Here, Xu et al. report the cryo-EM structure of the human GPI-T, revealing critical elements within an elongated, shared active site which is topologically arranged for substrate specificity.
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- 2022
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7. Correction to: Regulation of the adaptation to ER stress by KLF4 facilitates melanoma cell metastasis via upregulating NUCB2 expression
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Dongmei Zhang, Jingrong Lin, Yulin Chao, Lu Zhang, Lei Jin, Na Li, Ruiping He, Binbin Ma, Wenzhi Zhao, and Chuanchun Han
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Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Published
- 2021
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8. KLF4, a miR-32-5p targeted gene, promotes cisplatin-induced apoptosis by upregulating BIK expression in prostate cancer
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Lu Zhang, Xiaojie Li, Yulin Chao, Ruiping He, Junqiang Liu, Yi Yuan, Wenzhi Zhao, Chuanchun Han, and Xishuang Song
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Medicine ,Cytology ,QH573-671 - Abstract
Abstract Background Chemotherapeutic insensitivity remains a big challenge in prostate cancer treatment. Recently, increasing evidence has indicated that KLF4 plays a key role in prostate cancer. However, the potential biological role of KLF4 in Chemotherapeutic insensitivity of prostate cancer is still unknown. Methods The role of KLF4 in cisplatin-induced apoptosis was detected by western blotting and a cell counting kit (CCK8). The potential molecular mechanism of KLF4 in regulating prostate cancer chemosensitivity was investigated by RNA sequencing analysis, q-RT-PCR, western blotting and chromatin immunoprecipitation (ChIP). The expression level of KLF4 mediated by miR-32-5p was confirmed by bioinformatic analysis and luciferase assays. Results Here, we found that KLF4 was induced by cisplatin in prostate cancer cells and that the increase in KLF4 promoted cell apoptosis. Further mechanistic studies revealed that KLF4 directly bound to the promoter of BIK, facilitating its transcription. Additionally, we also found that the gene encoding KLF4 was a direct target of miR-32-5p. The downregulation of miR-32-5p in response to cisplatin treatment promoted KLF4 expression, which resulted in a increase in the chemosensitivity of prostate cancer. Conclusion Thus, our data revealed that KLF4 is an essential regulator in cisplatin-induced apoptosis, and the miR-32-5p-KLF4-BIK signalling axis plays an important role in prostate cancer chemosensitivity.
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- 2018
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9. Regulation of the adaptation to ER stress by KLF4 facilitates melanoma cell metastasis via upregulating NUCB2 expression
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Dongmei Zhang, Jingrong Lin, Yulin Chao, Lu Zhang, Lei Jin, Na Li, Ruiping He, Binbin Ma, Wenzhi Zhao, and Chuanchun Han
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Melanoma ,ER stress ,Apoptosis ,KLF4 ,Metastasis ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background Adaptation to ER stress has been indicated to play an important role in resistance to therapy in human melanoma. However, the relationship between adaptation to ER stress and cell metastasis in human melanoma remains unclear. Methods The relationship of adaptation to ER stress and cell metastasis was investigated using transwell and mouse metastasis assays. The potential molecular mechanism of KLF4 in regulating the adaptation to ER stress and cell metastasis was investigated using RNA sequencing analysis, q-RT-PCR and western blot assays. The transcriptional regulation of nucleobindin 2 (NUCB2) by KLF4 was identified using bioinformatic analysis, luciferase assay, and chromatin immunoprecipitation (ChIP). The clinical significance of KLF4 and NUCB2 was based on human tissue microarray (TMA) analysis. Results Here, we demonstrated that KLF4 was induced by ER stress in melanoma cells, and increased KLF4 inhibited cell apoptosis and promoted cell metastasis. Further mechanistic studies revealed that KLF4 directly bound to the promoter of NUCB2, facilitating its transcription. Additionally, an increase in KLF4 promoted melanoma ER stress resistance, tumour growth and cell metastasis by regulating NCUB2 expression in vitro and in vivo. Elevated KLF4 was found in human melanoma tissues, which was associated with NUCB2 expression. Conclusion Our data revealed that the promotion of ER stress resistance via the KLF4-NUCB2 axis is essential for melanoma cell metastasis, and KLF4 may be a promising specific target for melanoma therapy.
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- 2018
- Full Text
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10. Cryo-EM Structure of the RuvAB-Holliday Junction Complex Implicates Potential Mechanism of RuvB Motor Assembly
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Xu Zhang, Zixuan Zhou, Lin Dai, Yulin Chao, Zheng Liu, Mingdong Huang, Qianhui Qu, and Zhonghui Lin
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- 2022
11. ZBTB7A, a miR-663a target gene, protects osteosarcoma from endoplasmic reticulum stress-induced apoptosis by suppressing LncRNA GAS5 expression
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Wenzhi Zhao, Lu Zhang, Yuan Wang, Ruiping He, Chuanchun Han, Li Zhang, Yulin Chao, and Xin Xia
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0301 basic medicine ,Cancer Research ,Thapsigargin ,Apoptosis ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Downregulation and upregulation ,Cell Line, Tumor ,medicine ,Humans ,Osteosarcoma ,Endoplasmic reticulum ,Tunicamycin ,Endoplasmic Reticulum Stress ,medicine.disease ,DNA-Binding Proteins ,MicroRNAs ,030104 developmental biology ,Oncology ,chemistry ,030220 oncology & carcinogenesis ,Cancer research ,Unfolded protein response ,RNA, Long Noncoding ,GAS5 ,Transcription Factors - Abstract
Many studies have uncovered the essential role of ZBTB7A in regulating tumourigenesis. However, its functional significance in cell responses to endoplasmic reticulum stress (ER stress) remains poorly understood. Here we report that ZBTB7A functions as an important prosurvival factor in osteosarcoma cells undergoing pharmacological ER stress-induced by tunicamycin (TM) or thapsigargin (TG). The downregulation of ZBTB7A expression by ER stress promoted cell apoptosis in vitro and in vivo. ZBTB7A expression levels were increased in osteosarcoma tissues and elevated ZBTB7A was associated with osteosarcoma metastasis. Further mechanistic studies revealed that miR-663a induced by ER stress directly bound to the 3′UTR of ZBTB7A and contributed to ER stress-induced ZBTB7A downregulation in osteosarcoma cells. Additionally, our data revealed that ZBTB7A bound to the promoter of LncRNA GAS5 and transcriptionally suppressed LncRNA GAS5 expression, leading to a decline in ER stress-induced cell apoptosis. Collectively, our findings reveal the prosurvival role of ZBTB7A in osteosarcoma adaptation to ER stress and suggest that the miR-663a-ZBTB7A-LncRNAGAS5 pathway is essential for the survival of human osteosarcoma cells under ER stress.
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- 2019
12. Regulation of Cancer Stem Cell Self-Renewal by HOXB9 Antagonizes Endoplasmic Reticulum Stress-Induced Melanoma Cell Apoptosis via the miR-765–FOXA2 Axis
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Yulin Chao, Na Li, Chuanchun Han, Yongsheng Fan, Linlin Han, Jinming Chang, Jingrong Lin, and Dongmei Zhang
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0301 basic medicine ,Skin Neoplasms ,Carcinogenesis ,Mice, Nude ,Apoptosis ,Dermatology ,medicine.disease_cause ,Biochemistry ,Mice ,03 medical and health sciences ,0302 clinical medicine ,Downregulation and upregulation ,Cancer stem cell ,Cell Line, Tumor ,microRNA ,medicine ,Animals ,Humans ,Cell Self Renewal ,RNA, Small Interfering ,Melanoma ,Molecular Biology ,Homeodomain Proteins ,Chemistry ,Endoplasmic reticulum ,Cell Biology ,Endoplasmic Reticulum Stress ,medicine.disease ,Xenograft Model Antitumor Assays ,Up-Regulation ,Gene Expression Regulation, Neoplastic ,MicroRNAs ,030104 developmental biology ,Tissue Array Analysis ,030220 oncology & carcinogenesis ,Hepatocyte Nuclear Factor 3-beta ,Neoplastic Stem Cells ,Unfolded protein response ,Cancer research ,Female ,Signal Transduction - Abstract
Adaptation to endoplasmic reticulum (ER) stress has been indicated as a driver of malignancy and resistance to therapy in human melanoma. However, the relationship between cancer stem cells and adaptation to ER stress remains unclear. Here, we show that the ratio of cancer stem cells is increased in ER stress-resistant melanoma cells, which inhibit ER stress-induced apoptosis and promote tumorigenesis. Further mechanistic studies showed that HOXB9 triggered by ER stress favors cancer stem cell self-renewal and enhances ER stress resistance. HOXB9 directly binds to the promoter of microRNA-765 and facilitates its transcription, which in turn targets FOXA2, resulting in a FOXA2 decrease and cancer stem cell increase. Additionally, an increase in HOXB9 promotes melanoma growth and inhibits cell apoptosis in a mouse xenograft model. Elevated HOXB9 is found in human melanoma tissues, which is associated with microRNA-765 up-regulation and FOXA2 decreases. Thus, our data showed that the HOXB9-dependent, microRNA-765-mediated FOXA2 pathway contributes to the survival of melanoma under ER stress by maintaining the properties of cancer stem cells.
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- 2018
13. The deubiquitinase USP10 regulates KLF4 stability and suppresses lung tumorigenesis
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Yulin Chao, Lingqiang Zhang, Chuanchun Han, Xiang Wang, Shilin Xia, Xingyun Wang, Chaonan Li, and Hongchang Li
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0301 basic medicine ,Male ,Lung Neoplasms ,Carcinogenesis ,Regulator ,Kruppel-Like Transcription Factors ,Mice, Nude ,medicine.disease_cause ,Article ,Deubiquitinating enzyme ,03 medical and health sciences ,Kruppel-Like Factor 4 ,Mice ,0302 clinical medicine ,Ubiquitin ,stomatognathic system ,Carcinoma, Non-Small-Cell Lung ,medicine ,Animals ,Humans ,Lung cancer ,Molecular Biology ,Transcription factor ,Regulation of gene expression ,Mice, Knockout ,Tissue Inhibitor of Metalloproteinase-3 ,biology ,fungi ,Ubiquitination ,Cell Biology ,medicine.disease ,Gene Expression Regulation, Neoplastic ,030104 developmental biology ,HEK293 Cells ,KLF4 ,A549 Cells ,030220 oncology & carcinogenesis ,embryonic structures ,biology.protein ,Cancer research ,sense organs ,biological phenomena, cell phenomena, and immunity ,Ubiquitin Thiolesterase - Abstract
Krüppel-like factor 4 (KLF4), a key transcription factor, acts as a multifunctional player involved in the progression of numerous aggressive cancers. The proteasome-dependent pathway is one of the main modalities in controlling KLF4 abundance at a posttranslational level. Although some of the ubiquitin ligases have been identified, the deubiquitinases of KLF4 and the regulatory function remain unexplored. Here, by screening ubiquitin-specific proteases that may interact with KLF4, we found ubiquitin-specific peptidase 10 (USP10) as a deubiquitinating enzyme for KLF4. Forced expression of USP10 remarkably increases KLF4 protein level by blocking the latter degradation, whereas the depletion of USP10 promotes KLF4 degradation and thus enhances tumorigenesis. Loss of USP10 in mice downregulates KLF4 expression and accelerates Kras(G12D)-driven lung adenocarcinoma initiation and progression. In addition, our data revealed that KLF4 can facilitate the transcription of tumor suppressor TIMP3 by directly binding to the TIMP3 promoter. Clinically, reduction of USP10 expression, concomitant with decreased KLF4 and TIMP3 abundance in carcinoma tissue, predicts poor prognosis of lung cancer patient. Taken together, our results demonstrate that USP10 is a critical regulator of KLF4, pinpointing USP10-KLF4-TIMP3 axis as a promising therapeutic target in lung cancer.
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- 2019
14. KLF4, a miR-32-5p targeted gene, promotes cisplatin-induced apoptosis by upregulating BIK expression in prostate cancer
- Author
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Yulin Chao, Ruiping He, Lu Zhang, Xiaojie Li, Junqiang Liu, Chuanchun Han, Wenzhi Zhao, Xishuang Song, and Yi Yuan
- Subjects
0301 basic medicine ,Male ,Kruppel-Like Transcription Factors ,lcsh:Medicine ,Apoptosis ,Biology ,Biochemistry ,Mitochondrial Proteins ,03 medical and health sciences ,Prostate cancer ,Kruppel-Like Factor 4 ,0302 clinical medicine ,Downregulation and upregulation ,stomatognathic system ,Transcription (biology) ,medicine ,Humans ,lcsh:QH573-671 ,Molecular Biology ,Cisplatin ,lcsh:Cytology ,Research ,lcsh:R ,fungi ,Membrane Proteins ,Prostatic Neoplasms ,Cell Biology ,medicine.disease ,Up-Regulation ,Blot ,MicroRNAs ,030104 developmental biology ,KLF4 ,Drug Resistance, Neoplasm ,030220 oncology & carcinogenesis ,embryonic structures ,PC-3 Cells ,Cancer research ,sense organs ,biological phenomena, cell phenomena, and immunity ,Apoptosis Regulatory Proteins ,Chromatin immunoprecipitation ,medicine.drug ,Signal Transduction - Abstract
Background Chemotherapeutic insensitivity remains a big challenge in prostate cancer treatment. Recently, increasing evidence has indicated that KLF4 plays a key role in prostate cancer. However, the potential biological role of KLF4 in Chemotherapeutic insensitivity of prostate cancer is still unknown. Methods The role of KLF4 in cisplatin-induced apoptosis was detected by western blotting and a cell counting kit (CCK8). The potential molecular mechanism of KLF4 in regulating prostate cancer chemosensitivity was investigated by RNA sequencing analysis, q-RT-PCR, western blotting and chromatin immunoprecipitation (ChIP). The expression level of KLF4 mediated by miR-32-5p was confirmed by bioinformatic analysis and luciferase assays. Results Here, we found that KLF4 was induced by cisplatin in prostate cancer cells and that the increase in KLF4 promoted cell apoptosis. Further mechanistic studies revealed that KLF4 directly bound to the promoter of BIK, facilitating its transcription. Additionally, we also found that the gene encoding KLF4 was a direct target of miR-32-5p. The downregulation of miR-32-5p in response to cisplatin treatment promoted KLF4 expression, which resulted in a increase in the chemosensitivity of prostate cancer. Conclusion Thus, our data revealed that KLF4 is an essential regulator in cisplatin-induced apoptosis, and the miR-32-5p-KLF4-BIK signalling axis plays an important role in prostate cancer chemosensitivity. Electronic supplementary material The online version of this article (10.1186/s12964-018-0270-x) contains supplementary material, which is available to authorized users.
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- 2018
15. Regulation of the adaptation to ER stress by KLF4 facilitates melanoma cell metastasis via upregulating NUCB2 expression
- Author
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Ruiping He, Chuanchun Han, Binbin Ma, Na Li, Jingrong Lin, Dongmei Zhang, Lu Zhang, Yulin Chao, Wenzhi Zhao, and Lei Jin
- Subjects
0301 basic medicine ,Male ,Cancer Research ,Cell ,Kruppel-Like Transcription Factors ,Mice, Nude ,Apoptosis ,Nerve Tissue Proteins ,Transfection ,lcsh:RC254-282 ,Metastasis ,03 medical and health sciences ,Kruppel-Like Factor 4 ,Mice ,0302 clinical medicine ,stomatognathic system ,Cell Line, Tumor ,medicine ,Transcriptional regulation ,Animals ,Humans ,Nucleobindins ,Neoplasm Metastasis ,Melanoma ,Chemistry ,Research ,Calcium-Binding Proteins ,medicine.disease ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,Endoplasmic Reticulum Stress ,KLF4 ,Nucleobindin 2 ,Up-Regulation ,DNA-Binding Proteins ,030104 developmental biology ,medicine.anatomical_structure ,Oncology ,030220 oncology & carcinogenesis ,embryonic structures ,Cancer research ,Unfolded protein response ,Heterografts ,sense organs ,ER stress ,Chromatin immunoprecipitation - Abstract
Background Adaptation to ER stress has been indicated to play an important role in resistance to therapy in human melanoma. However, the relationship between adaptation to ER stress and cell metastasis in human melanoma remains unclear. Methods The relationship of adaptation to ER stress and cell metastasis was investigated using transwell and mouse metastasis assays. The potential molecular mechanism of KLF4 in regulating the adaptation to ER stress and cell metastasis was investigated using RNA sequencing analysis, q-RT-PCR and western blot assays. The transcriptional regulation of nucleobindin 2 (NUCB2) by KLF4 was identified using bioinformatic analysis, luciferase assay, and chromatin immunoprecipitation (ChIP). The clinical significance of KLF4 and NUCB2 was based on human tissue microarray (TMA) analysis. Results Here, we demonstrated that KLF4 was induced by ER stress in melanoma cells, and increased KLF4 inhibited cell apoptosis and promoted cell metastasis. Further mechanistic studies revealed that KLF4 directly bound to the promoter of NUCB2, facilitating its transcription. Additionally, an increase in KLF4 promoted melanoma ER stress resistance, tumour growth and cell metastasis by regulating NCUB2 expression in vitro and in vivo. Elevated KLF4 was found in human melanoma tissues, which was associated with NUCB2 expression. Conclusion Our data revealed that the promotion of ER stress resistance via the KLF4-NUCB2 axis is essential for melanoma cell metastasis, and KLF4 may be a promising specific target for melanoma therapy.
- Published
- 2018
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