215 results on '"Zaccaria, Simone"'
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2. Mixed responses to targeted therapy driven by chromosomal instability through p53 dysfunction and genome doubling
3. HATCHet2: clone- and haplotype-specific copy number inference from bulk tumor sequencing data
4. CONIPHER: a computational framework for scalable phylogenetic reconstruction with error correction
5. Author Correction: The evolution of lung cancer and impact of subclonal selection in TRACERx
6. The evolution of non-small cell lung cancer metastases in TRACERx
7. The evolution of lung cancer and impact of subclonal selection in TRACERx
8. Evolutionary characterization of lung adenocarcinoma morphology in TRACERx
9. Comprehensive characterization of 536 patient-derived xenograft models prioritizes candidates for targeted treatment
10. Insights into the metastatic cascade through research autopsies
11. Parsimonious Clone Tree Integration in cancer
12. Author Correction: Comprehensive characterization of 536 patient-derived xenograft models prioritizes candidates for targeted treatment
13. Characterizing allele- and haplotype-specific copy numbers in single cells with CHISEL
14. CONIPHER: a computational framework for scalable phylogenetic reconstruction with error correction
15. Quantifying the impact of immunotherapy on RNA dynamics in cancer
16. Use of micro- and ultrafiltration membranes for concentration of laccase-rich enzymatic extract of Pleurotus sajor-caju PS-2001 and application in dye decolorization
17. Phenol removal by laccases and other phenol oxidases of Pleurotus sajor-caju PS-2001 in submerged cultivations and aqueous mixtures
18. Subclonal Somatic Copy-Number Alterations Emerge and Dominate in Recurrent Osteosarcoma
19. Single-Cell Tumor Phylogeny Inference with Copy-Number Constrained Mutation Losses
20. The Copy-Number Tree Mixture Deconvolution Problem and Applications to Multi-sample Bulk Sequencing Tumor Data
21. HATCHet2: clone- and haplotype-specific copy number inference from bulk tumor sequencing data
22. Copy-Number Evolution Problems: Complexity and Algorithms
23. Accurate quantification of copy-number aberrations and whole-genome duplications in multi-sample tumor sequencing data
24. On the Fixed Parameter Tractability and Approximability of the Minimum Error Correction Problem
25. Supplementary Figure S7 from Structurally Complex Osteosarcoma Genomes Exhibit Limited Heterogeneity within Individual Tumors and across Evolutionary Time
26. Supplementary Table S1 from Structurally Complex Osteosarcoma Genomes Exhibit Limited Heterogeneity within Individual Tumors and across Evolutionary Time
27. Data from Structurally Complex Osteosarcoma Genomes Exhibit Limited Heterogeneity within Individual Tumors and across Evolutionary Time
28. Abstract 4277: Measuring proliferation rates of distinct tumour clones using single-cell DNA sequencing
29. Abstract 3556: Assessing patterns of genomic instability in recurrent osteosarcoma
30. Abstract 2037: Tracking the emergence of immunotherapy resistance in lung cancer metastases
31. Structurally complex osteosarcoma genomes exhibit limited heterogeneity within individual tumors and across evolutionary time
32. Body composition and lung cancer-associated cachexia in TRACERx
33. The evolution of lung cancer and impact of subclonal selection in TRACERx
34. Copy number architectures define treatment-mediated selection of lethal prostate cancer clones.
35. CNAViz: An interactive webtool for user-guided segmentation of tumor DNA sequencing data
36. Abstract B022: Subclonal somatic copy number alterations emerge and dominate in relapsed/refractory osteosarcoma
37. HapCHAT: adaptive haplotype assembly for efficiently leveraging high coverage in long reads
38. Abstract 3620: Investigating the role of altered replication timing during tumor evolution in lung and breast cancer
39. Abstract 801: Surprisingly conserved copy numbers from cell to cell within structurally complex tumors challenge the unstable genome hypothesis
40. Abstract 1394: Pervasive allele specific transcriptional repression of the class I and II HLA genes in TRACERx non-small cell lung cancer
41. Abstract 1606: Chromosomal instability drives spatial and temporal phenotypic diversity in Schwann cancer cells
42. Subclonal somatic copy number alterations emerge and dominate in recurrent osteosarcoma.
43. The translational challenges of precision oncology
44. Allele-informed copy number evaluation of plasma DNA samples from metastatic prostate cancer patients: the PCF_SELECT consortium assay
45. On the Fixed Parameter Tractability and Approximability of the Minimum Error Correction Problem
46. DeCiFering the elusive cancer cell fraction in tumor heterogeneity and evolution
47. Structurally complex osteosarcoma genomes exhibit limited heterogeneity within individual tumors and across evolutionary time
48. Parsimonious Clone Tree Reconciliation in Cancer
49. Parsimonious Clone Tree Reconciliation in Cancer
50. Characterizing the allele- and haplotype-specific copy number landscape of cancer genomes at single-cell resolution with CHISEL
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