43 results on '"Zachary T. Olmsted"'
Search Results
2. Axonal transport during injury on a theoretical axon
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Soumyadeep Chandra, Rounak Chatterjee, Zachary T. Olmsted, Amitava Mukherjee, and Janet L. Paluh
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traumatic brain injury ,axonopathy ,neurotransmission ,microtubules ,kinesins ,TASEP-LK ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Neurodevelopment, plasticity, and cognition are integral with functional directional transport in neuronal axons that occurs along a unique network of discontinuous polar microtubule (MT) bundles. Axonopathies are caused by brain trauma and genetic diseases that perturb or disrupt the axon MT infrastructure and, with it, the dynamic interplay of motor proteins and cargo essential for axonal maintenance and neuronal signaling. The inability to visualize and quantify normal and altered nanoscale spatio-temporal dynamic transport events prevents a full mechanistic understanding of injury, disease progression, and recovery. To address this gap, we generated DyNAMO, a Dynamic Nanoscale Axonal MT Organization model, which is a biologically realistic theoretical axon framework. We use DyNAMO to experimentally simulate multi-kinesin traffic response to focused or distributed tractable injury parameters, which are MT network perturbations affecting MT lengths and multi-MT staggering. We track kinesins with different motility and processivity, as well as their influx rates, in-transit dissociation and reassociation from inter-MT reservoirs, progression, and quantify and spatially represent motor output ratios. DyNAMO demonstrates, in detail, the complex interplay of mixed motor types, crowding, kinesin off/on dissociation and reassociation, and injury consequences of forced intermingling. Stalled forward progression with different injury states is seen as persistent dynamicity of kinesins transiting between MTs and inter-MT reservoirs. DyNAMO analysis provides novel insights and quantification of axonal injury scenarios, including local injury-affected ATP levels, as well as relates these to influences on signaling outputs, including patterns of gating, waves, and pattern switching. The DyNAMO model significantly expands the network of heuristic and mathematical analysis of neuronal functions relevant to axonopathies, diagnostics, and treatment strategies.
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- 2023
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3. Direct Wave Intraoperative Neuromonitoring for Spinal Tumor Resection: A Focused Review
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Zachary T. Olmsted, Brendan Ryu, Ganesh Phayal, Ross Green, Sheng-Fu Larry Lo, Daniel M. Sciubba, Justin W. Silverstein, and Randy S. D’Amico
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Corticospinal tract ,D-wave ,Intramedullary spinal cord tumor ,Intraoperative neuromonitoring ,Multimodal ,Predictive value ,Surgery ,RD1-811 ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
At present, surgical resection of primary intramedullary spinal cord tumors is the mainstay of treatment. However, given the dimensional constraints of the narrow spinal canal and dense organization of the ascending and descending tracts, intramedullary spinal cord tumor resection carries a significant risk of iatrogenic neurological injury. Intraoperative neurophysiological monitoring (IONM) and mapping techniques have been developed to evaluate the functional integrity of the essential neural pathways and optimize the surgical strategies. IONM can also inform on impending harm to at-risk structures and can correlate with postoperative functional recovery if damage has occurred. Direct waves (D-waves) will provide immediate feedback on the integrity of the lateral corticospinal tract. In the present review, we have provided an update on the utility of D-waves for spinal cord tumor resection. We have highlighted the neuroanatomical and neurophysiological insights from the use of D-wave monitoring, the technical considerations and limitations of the D-wave technique, and multimodal co-monitoring with motor-evoked potentials and somatosensory-evoked potentials. Together with motor-evoked potentials, D-waves can help to guide the extent of tumor resection and provide intraoperative warning signs and alarm criteria to direct the surgical strategy. D-waves can also serve as prognostic biomarkers for long-term recovery of postoperative motor function. We propose that the use of D-wave IONM can contribute key findings for clinical decision-making during spinal cord tumor resection.
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- 2023
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4. Generation of human elongating multi-lineage organized cardiac gastruloids
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Zachary T. Olmsted, Maria Belen Paredes-Espinosa, and Janet L. Paluh
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Bioinformatics ,Developmental biology ,Neuroscience ,Stem Cells ,Organoids ,Science (General) ,Q1-390 - Abstract
Summary: Human elongating multi-lineage organized (EMLOC) gastruloid technology captures key aspects of trunk neurodevelopment including neural integration with cardiogenesis. We generate multi-chambered, contractile EMLOC gastruloids with integrated central and peripheral neurons using defined culture conditions and signaling factors. hiPSC colonies are primed by activating FGF and Wnt signaling pathways for co-induced lineages. EMLOC gastruloids are then initialized with primed cells in suspension culture using timed exposure to FGF2, HGF, IGF1, and Y-27632. Cardiogenesis is stimulated by FGF2, VEGF, and ascorbic acid.For complete details on the use and execution of this protocol, please refer to Olmsted and Paluh (2022).1 : Publisher’s note: Undertaking any experimental protocol requires adherence to local institutional guidelines for laboratory safety and ethics.
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- 2022
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5. Co-development of central and peripheral neurons with trunk mesendoderm in human elongating multi-lineage organized gastruloids
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Zachary T. Olmsted and Janet L. Paluh
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Science - Abstract
The authors generate EMLOs (elongating multi-lineage organized gastruloids): organoids that self-organize to form compartments with characteristics of the central nervous system, peripheral nervous system, mesenchyme, and gut tube.
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- 2021
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6. A combined human gastruloid model of cardiogenesis and neurogenesis
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Zachary T. Olmsted and Janet L. Paluh
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Cell biology ,Stem cells research ,Genomics ,Science - Abstract
Summary: Multi-lineage development from gastruloids is enabling unprecedented opportunities to model and study human embryonic processes and is expected to accelerate ex vivo strategies in organ development. Reproducing human cardiogenesis with neurogenesis in a multi-lineage context remains challenging, requiring spatiotemporal input of paracrine and mechanical cues. Here we extend elongating multi-lineage organized (EMLO) gastruloids to include cardiogenesis (EMLOC) and describe interconnected neuro-cardiac lineages in a single gastruloid model. Contractile EMLOCs recapitulate numerous interlinked developmental features including heart tube formation and specialization, cardiomyocyte differentiation and remodeling phases, epicardium, ventricular wall morphogenesis, chamber-like structures and formation of a putative outflow tract. The EMLOC cardiac region, which originates anterior to gut tube primordium, is progressively populated by neurons in a spatial pattern mirroring the known distribution of neurons in the innervated human heart. This human EMLOC model represents a multi-lineage advancement for the study of coincident neurogenesis and cardiogenesis.
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- 2022
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7. Fully Characterized Mature Human iPS- and NMP-Derived Motor Neurons Thrive Without Neuroprotection in the Spinal Contusion Cavity
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Zachary T. Olmsted, Cinzia Stigliano, Brandon Marzullo, Jose Cibelli, Philip J. Horner, and Janet L. Paluh
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spinal cord injury ,spinal motor neuron ,neuromesodermal progenitor ,oligodendrocyte progenitor cell ,neuron transplantation ,neuron survival ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Neural cell interventions in spinal cord injury (SCI) have focused predominantly on transplanted multipotent neural stem/progenitor cells (NSPCs) for animal research and clinical use due to limited information on survival of spinal neurons. However, transplanted NSPC fate is unpredictable and largely governed by injury-derived matrix and cytokine factors that are often gliogenic and inflammatory. Here, using a rat cervical hemicontusion model, we evaluate the survival and integration of hiPSC-derived spinal motor neurons (SMNs) and oligodendrocyte progenitor cells (OPCs). SMNs and OPCs were differentiated in vitro through a neuromesodermal progenitor stage to mimic the natural origin of the spinal cord. We demonstrate robust survival and engraftment without additional injury site modifiers or neuroprotective biomaterials. Ex vivo differentiated neurons achieve cervical spinal cord matched transcriptomic and proteomic profiles, meeting functional electrophysiology parameters prior to transplantation. These data establish an approach for ex vivo developmentally accurate neuronal fate specification and subsequent transplantation for a more streamlined and predictable outcome in neural cell-based therapies of SCI.
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- 2022
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8. Review of the Treatments for Central Neuropathic Pain
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Breanna L. Sheldon, Zachary T. Olmsted, Shelby Sabourin, Ehsaun Heydari, Tessa A. Harland, and Julie G. Pilitsis
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central neuropathic pain (CNP) ,pharmacological treatment ,surgical treatment ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Central neuropathic pain (CNP) affects millions worldwide, with an estimated prevalence of around 10% globally. Although there are a wide variety of treatment options available, due to the complex and multidimensional nature in which CNP arises and presents symptomatically, many patients still experience painful symptoms. Pharmaceutical, surgical, non-invasive, cognitive and combination treatment options offer a generalized starting point for alleviating symptoms; however, a more customized approach may provide greater benefit. Here, we comment on the current treatment options that exist for CNP and further suggest the need for additional research regarding the use of biomarkers to help individualize treatment options for patients.
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- 2022
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9. Recommendations for Neuromodulation in Diabetic Neuropathic Pain
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Zachary T. Olmsted, Amir Hadanny, Anthony M. Marchese, Marisa DiMarzio, Olga Khazen, Charles Argoff, Vishad Sukul, and Julie G. Pilitsis
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neuropathic pain ,painful diabetic neuropathy ,diabetes mellitus ,neuromodulation ,pharmacotherapy ,pain management ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Over 50% of the 34 million people who suffer from diabetes mellitus (DM) are affected by diabetic neuropathy. Painful diabetic neuropathy (PDN) impacts 40–50% of that group (8.5 million patients) and is associated with a significant source of disability and economic burden. Though new neuromodulation options have been successful in recent clinical trials (NCT03228420), still there are many barriers that restrict patients from access to these therapies. We seek to examine our tertiary care center (Albany Medical Center, NY, USA) experience with PDN management by leveraging our clinical database to assess patient referral patterns and utilization of neuromodulation. We identified all patients with a diagnosis of diabetes type 1 (CODE: E10.xx) or diabetes type 2 (CODE: E11.xx) AND neuralgia/neuropathic pain (CODE: M79.2) or neuropathy (CODE: G90.09) or chronic pain (CODE: G89.4) or limb pain (CODE: M79.6) OR diabetic neuropathy (CODE: E11.4) who saw endocrinology, neurology, and/or neurosurgery from January 1, 2019, to December 31, 2019. We then determined which patients had received pain medications and/or neuromodulation to divide the cohort into three groups: no treatment, conservative treatment, and neuromodulation treatment. The cohorts were compared with chi-square or one-way ANOVA with multiple comparisons to analyze the differences. A total of 2,635 PDN patients were identified, of which 700 received no treatment for PDN, 1,906 received medication(s), and 29 received neuromodulation (intrathecal therapy, spinal cord stimulation, or dorsal root ganglion stimulation). The patients who received pain medications for PDN visited neurology more often than the pain specialists. Of the patients that received neuromodulation, 24 had seen neurology, 6 neurology pain, and 3 anesthesia pain. They averaged 2.78 pain medications prior to implant. Approximately 41% of the patients in the conservative management group were prescribed three or more medications. Of the 1,935 treated patients, only 1.5% of the patients received neuromodulation. The patients on three or more pain medications without symptomatic relief may be potential candidates for neuromodulation. An opportunity, therefore, exists to educate providers on the benefits of neuromodulation procedures.
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- 2021
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10. Transplantable human motor networks as a neuron-directed strategy for spinal cord injury
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Zachary T. Olmsted, Cinzia Stigliano, Annalisa Scimemi, Tatiana Wolfe, Jose Cibelli, Philip J. Horner, and Janet L. Paluh
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Neuroscience ,Bioengineering ,Tissue engineering ,Science - Abstract
Summary: To repair neural circuitry following spinal cord injury (SCI), neural stem cell (NSC) transplantation has held a primary focus; however, stochastic outcomes generate challenges driven in part by NSC differentiation and tumor formation. The recent ability to generate regionally specific neurons and their support cells now allows consideration of directed therapeutic approaches with pre-differentiated and networked spinal neural cells. Here, we form encapsulated, transplantable neuronal networks of regionally matched cervical spinal motor neurons, interneurons, and oligodendrocyte progenitor cells derived through trunk-biased neuromesodermal progenitors. We direct neurite formation in alginate-based neural ribbons to generate electrically active, synaptically connected networks, characterized by electrophysiology and calcium imaging before transplantation into rodent models of contused SCI for evaluation at 10-day and 6-week timepoints. The in vivo analyses demonstrate viability and retention of interconnected synaptic networks that readily integrate with the host parenchyma to advance goals of transplantable neural circuitry for SCI treatment.
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- 2021
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11. Stem Cell Neurodevelopmental Solutions for Restorative Treatments of the Human Trunk and Spine
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Zachary T. Olmsted and Janet L. Paluh
- Subjects
stem cells ,differentiation ,trunk development ,spine development ,organoids ,gastruloids ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
The ability to reliably repair spinal cord injuries (SCI) will be one of the greatest human achievements realized in regenerative medicine. Until recently, the cellular path to this goal has been challenging. However, as detailed developmental principles are revealed in mouse and human models, their application in the stem cell community brings trunk and spine embryology into efforts to advance human regenerative medicine. New models of posterior embryo development identify neuromesodermal progenitors (NMPs) as a major bifurcation point in generating the spinal cord and somites and is leading to production of cell types with the full range of axial identities critical for repair of trunk and spine disorders. This is coupled with organoid technologies including assembloids, circuitoids, and gastruloids. We describe a paradigm for applying developmental principles towards the goal of cell-based restorative therapies to enable reproducible and effective near-term clinical interventions.
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- 2021
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12. Deep Brain Ultrasound Ablation Thermal Dose Modeling with in Vivo Experimental Validation.
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Zhanyue Zhao, Benjamin Szewczyk, Matthew Tarasek, Charles Bales, Yang Wang, Ming Liu, Yiwei Jiang, Chitresh Bhushan, Eric W. Fiveland, Zahabiya Campwala, Rachel Trowbridge, Phillip M. Johansen, Zachary T. Olmsted, Goutam Ghoshal, Tamas Heffter, Katie Y. Gandomi, Farid Tavakkolmoghaddam, Christopher J. Nycz, Erin Jeannotte, Shweta Mane, Julia Nalwalk, E. Clif Burdette, Jiang Qian, Desmond Teck Beng Yeo, Julie Pilitsis, and Gregory S. Fischer
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- 2024
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13. Rapid Visualization Tool for Intraoperative Dorsal Column Mapping Triggered by Spinal Cord Stimulation in Chronic Pain Patients.
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Ilknur Telkes, Aditya Behal, Amir Hadanny, Zachary T. Olmsted, Girish Chitnis, Bryan McLaughlin, and Julie G. Pilitsis
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- 2021
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14. Evolution of flash visual evoked potentials to monitor visual pathway integrity during tumor resection: illustrative cases and literature review
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Zachary T. Olmsted, Justin W. Silverstein, Evan H. Einstein, Jayne Sowulewski, Priscilla Nelson, John A. Boockvar, and Randy S. D’Amico
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Surgery ,Neurology (clinical) ,General Medicine - Published
- 2023
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15. 209 What Happens to Brain Outside the Thermal Ablation Zones? An Assessment of Needle-Based Therapeutic Ultrasound in Survival Swine
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Benjamin Szewczyk, Phillip Johansen, Matthew Tarasek, Zahabiya Campwala, Rachel Trowbridge, Zhanyue Zhao, Zachary T. Olmsted, Chitresh Bhushan, Eric Fiveland, Goutam Ghoushal, Tamas Heffter, Farid Tavakkolmoghaddam, Charles Bales, Yang Wang, Dhruv Kool Rajamani, Katie Gandomi, Christopher Nycz, Erin Jeannotte, Shweta Mane, Julia Nalwalk, Clif Burdette, Gregory S. Fischer, Desmond Yeo, Jiang Qian, and Julie G. Pilitsis
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Surgery ,Neurology (clinical) - Published
- 2023
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16. Treatment Strategies for Generator Pocket Pain
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Vishad Sukul, Gregory Topp, Jonathan Bao, Olga Khazen, Michael D. Staudt, Zachary T. Olmsted, Miriam M. Shao, Guy Gechtman, Julie G. Pilitsis, and Marisa DiMarzio
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Male ,medicine.medical_specialty ,Device placement ,Pain relief ,Spinal cord stimulation ,medicine ,Humans ,Pain Management ,Failed Back Surgery Syndrome ,Pain Measurement ,Neuromodulation & Minimally Invasive Surgery Section ,Spinal Cord Stimulation ,business.industry ,Chronic pain ,General Medicine ,medicine.disease ,Surgery ,Treatment Outcome ,Anesthesiology and Pain Medicine ,Complex regional pain syndrome ,Cohort ,Neuropathic pain ,Neuralgia ,Treatment strategy ,Female ,Neurology (clinical) ,Chronic Pain ,business - Abstract
Objective Generator site pain is a relatively common phenomenon in patients undergoing spinal cord stimulation (SCS) that complicates management and effective pain relief. This pain may be managed conservatively, with repositioning of the battery and, in some cases, with explant. Here we explore our experience with management of generator site pain (“pocket pain”) in a large single-center study. Methods All SCS permanent implants and implantable pulse generator (IPG) placements over 9 years were reviewed. Of 785 cases, we identified 43 patients with pocket pain (5.5%). Demographics and treatments of the pocket pain cohort were analyzed. Results The mean age (± SEM) of the pocket pain cohort was 46.86 ± 1.06, and there were 10/33 males/females. Females were overrepresented in pocket pain cohort (76.7%) when compared with the total SCS cohort (59.0%) (X2 = 5.93, P = 0.015). Diagnosis included failed back surgery syndrome (51.2%), complex regional pain syndrome (23.3%), and chronic neuropathic pain (25.5%). No patients improved with conservative therapy. All patients either went on to revision (n = 23) or explant (n = 20). Time from initial surgery to development of pocket pain was 7.5 months (range: 0.3–88) and from pocket pain to revision surgery was 4.5 months (range: 0.4–26). In addition, significantly more pocket pain patients (65.1%) had workers’ compensation (WC) insurance compared with patients without pocket pain (24.9%) (X2 = 33.3, P Conclusion In our institutional experience, pocket pain was inadequately managed with conservative treatments. Being female and having SCS filed under WC increased risk of pocket pain. Future work will explore the nuances in device placement based on body shape and manual activity responsibilities.
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- 2021
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17. Toward Generalizable Trajectory Planning for Human Intracerebral Trials and Therapy
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Zachary T. Olmsted, Erika A. Petersen, Julie G. Pilitsis, Scott Y. Rahimi, Peng Roc Chen, Sean I. Savitz, Daniel T. Laskowitz, Brad J. Kolls, and Michael D. Staudt
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Stereotaxic Techniques ,Biological Products ,Imaging, Three-Dimensional ,Humans ,Reproducibility of Results ,Surgery ,Neurology (clinical) ,Magnetic Resonance Imaging ,Neurosurgical Procedures - Abstract
Introduction: Stereotactic neurosurgical techniques are increasingly used to deliver biologics, such as cells and viruses, although standardized procedures are necessary to ensure consistency and reproducibility. Objective: We provide an instructional guide to help plan for complex image-guided trajectories; this may be of particular benefit to surgeons new to biologic trials and companies planning such trials. Methods: We show how nuclei can be segmented and multiple trajectories with multiple injection points can be created through a single or multiple burr hole(s) based on preoperative images. Screenshots similar to those shown in this article can be used for planning purposes and for quality control in clinical trials. Results: This method enables the precise definition of 3-D target structures, such as the putamen, and efficient planning trajectories for biologic injections. The technique is generalizable and largely independent of procedural format, and thus can be integrated with frame-based or frameless platforms to streamline reproducible therapeutic delivery. Conclusions: We describe an easy-to-use and generalizable protocol for intracerebral trajectory planning for stereotactic delivery of biologics. Although we highlight intracerebral stem cell delivery to the putamen using a frame-based stereotactic delivery system, similar strategies may be employed for different brain nuclei using different platforms. We anticipate this will inform future advanced and fully automated neurosurgical procedures to help unify the field and decrease inherent variability seen with manual trajectory planning.
- Published
- 2021
18. Intradural Extramedullary Solitary Fibrous Tumor of the Thoracic Spinal Cord
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Zachary T. Olmsted, Samuel J Wahl, Daniel Schneider, Omer Doron, Randy S. D'Amico, Hossein Hosseini, Daniel M Sciubba, Ross Green, and Joanna K Tabor
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Solitary fibrous tumor ,medicine.medical_specialty ,Pathology ,thoracic spinal cord ,Soft Tissue Neoplasm ,extramedullary ,CD99 ,Neurosurgery ,CD34 ,primary tumor ,medicine ,intradural ,solitary fibrous tumor ,hemangiopericytoma ,Hemangiopericytoma ,business.industry ,General Engineering ,Spinal cord ,medicine.disease ,Primary tumor ,medicine.anatomical_structure ,Oncology ,Histopathology ,business ,neoplasm - Abstract
Solitary fibrous tumors (SFTs) are rare soft tissue neoplasms that can impact the central nervous system (CNS). SFTs comprise
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- 2021
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19. Preoperative evaluation of coagulation status in neuromodulation patients
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Thomas Tagney, Theodore Cangero, Amir Hadanny, Dorothy Mitchell, Vishad Sukul, Anthony M. Marchese, Olga Khazen, Marisa DiMarzio, Julie G. Pilitsis, Christopher Figueroa, Jennifer Tram, Kyle Kroll, and Zachary T. Olmsted
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Prothrombin time ,Rivaroxaban ,medicine.diagnostic_test ,business.industry ,medicine.drug_class ,Anticoagulant ,Warfarin ,General Medicine ,Clopidogrel ,Dabigatran ,Anesthesia ,Medicine ,Intrathecal pump ,business ,medicine.drug ,Partial thromboplastin time - Abstract
OBJECTIVE The incidence of hemorrhage in patients who undergo deep brain stimulation (DBS) and spinal cord stimulation (SCS) is between 0.5% and 2.5%. Coagulation status is one of the factors that can predispose patients to the development of these complications. As a routine part of preoperative assessment, the authors obtain prothrombin time (PT), partial thromboplastin time (PTT), and platelet count. However, insurers often cover only PT/PTT laboratory tests if the patient is receiving warfarin/heparin. The authors aimed to examine their experience with abnormal coagulation parameters in patients who underwent neuromodulation. METHODS Patients who underwent neuromodulation (SCS, DBS, or intrathecal pump implantation) over a 9-year period and had preoperative laboratory values available were included. The authors determined abnormal values on the basis of a clinical protocol utilized at their practice, which combined the normal ranges of the laboratory tests and clinical relevance. This protocol had cutoff values of 12 seconds and 39 seconds for PT and PTT, respectively, and < 120,000 platelets/μl. The authors identified risk factors for these abnormalities and described interventions. RESULTS Of the 1767 patients who met the inclusion criteria, 136 had abnormal preoperative laboratory values. Five of these 136 patients had values that were misclassified as abnormal because they were within the normal ranges at the outside facility where they were tested. Fifty-one patients had laboratory values outside the ranges of our protocol, but the surgeons reviewed and approved these patients without further intervention. Of the remaining 80 patients, 8 had known coagulopathies and 24 were receiving warfarin/heparin. The remaining 48 patients were receiving other anticoagulant/antiplatelet medications. These included apixaban/rivaroxaban/dabigatran anticoagulants (n = 22; mean ± SD PT 13.7 ± 2.5 seconds) and aspirin/clopidogrel/other antiplatelet medications (n = 26; mean ± SD PT 14.4 ± 5.8 seconds). Eight new coagulopathies were identified and further investigated with hematological analysis. CONCLUSIONS New anticoagulants and antiplatelet medications are not monitored with PT/PTT, but they affect coagulation status and laboratory values. Although platelet function tests aid in a subset of medications, it is more difficult to assess the coagulation status of patients receiving novel anticoagulants. PT/PTT may provide value preoperatively.
- Published
- 2021
20. Fully Characterized Mature Human iPS- and NMP-Derived Motor Neurons Thrive Without Neuroprotection in the Spinal Contusion Cavity
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Zachary T. Olmsted, Cinzia Stigliano, Brandon Marzullo, Jose Cibelli, Philip J. Horner, and Janet L. Paluh
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Cellular and Molecular Neuroscience ,Cellular Neuroscience ,neuromesodermal progenitor ,neuron transplantation ,neuron maturation ,oligodendrocyte progenitor cell ,neuron survival ,Neurosciences. Biological psychiatry. Neuropsychiatry ,spinal motor neuron ,contusion ,spinal cord injury ,RC321-571 ,Original Research - Abstract
Neural cell interventions in spinal cord injury (SCI) have focused predominantly on transplanted multipotent neural stem/progenitor cells (NSPCs) for animal research and clinical use due to limited information on survival of spinal neurons. However, transplanted NSPC fate is unpredictable and largely governed by injury-derived matrix and cytokine factors that are often gliogenic and inflammatory. Here, using a rat cervical hemicontusion model, we evaluate the survival and integration of hiPSC-derived spinal motor neurons (SMNs) and oligodendrocyte progenitor cells (OPCs). SMNs and OPCs were differentiated in vitro through a neuromesodermal progenitor stage to mimic the natural origin of the spinal cord. We demonstrate robust survival and engraftment without additional injury site modifiers or neuroprotective biomaterials. Ex vivo differentiated neurons achieve cervical spinal cord matched transcriptomic and proteomic profiles, meeting functional electrophysiology parameters prior to transplantation. These data establish an approach for ex vivo developmentally accurate neuronal fate specification and subsequent transplantation for a more streamlined and predictable outcome in neural cell-based therapies of SCI.
- Published
- 2021
21. Generation of Human Elongating Multi-Lineage Organized (EMLO) Gastruloids
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Zachary T. Olmsted and Janet L. Paluh
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Lineage (genetic) ,Evolutionary biology ,Biology - Abstract
The inaccessibility of scientific discovery to human development at post-implantation, including specialization and differentiation, necessitates sophisticated heterogenous 3D in vitro models. This protocol describes the generation and self-organization of human elongating multi-lineage organized (EMLO) gastruloids in suspension without the need for supplied extracellular matrix (ECM). EMLO gastruloids can be matured to large organoid states comprised of interconnected tissue microstructures of the trunk. These include correlates of the neuromesodermal progenitor-derived central nervous system, the neural crest cell-derived peripheral nervous system, the endoderm-derived primitive gut tube, and the mesoderm-derived splanchnic mesenchyme. Herein, we provide critical details for the reproducible generation of human EMLOs in vitro.
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- 2021
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22. Stem Cell Neurodevelopmental Solutions for Restorative Treatments of the Human Trunk and Spine
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Janet L. Paluh and Zachary T. Olmsted
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0301 basic medicine ,Cell type ,gastruloids ,Neurosciences. Biological psychiatry. Neuropsychiatry ,Review ,Regenerative medicine ,spine development ,Cell therapy ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,0302 clinical medicine ,stem cells ,Medicine ,Progenitor cell ,organoids ,business.industry ,trunk development ,differentiation ,assembloids ,Spinal cord ,Trunk ,Spine (zoology) ,030104 developmental biology ,medicine.anatomical_structure ,Cellular Neuroscience ,cell therapy ,Stem cell ,business ,Neuroscience ,030217 neurology & neurosurgery ,RC321-571 - Abstract
The ability to reliably repair spinal cord injuries (SCI) will be one of the greatest human achievements realized in regenerative medicine. Until recently, the cellular path to this goal has been challenging. However, as detailed developmental principles are revealed in mouse and human models, their application in the stem cell community brings trunk and spine embryology into efforts to advance human regenerative medicine. New models of posterior embryo development identify neuromesodermal progenitors (NMPs) as a major bifurcation point in generating the spinal cord and somites and is leading to production of cell types with the full range of axial identities critical for repair of trunk and spine disorders. This is coupled with organoid technologies including assembloids, circuitoids, and gastruloids. We describe a paradigm for applying developmental principles towards the goal of cell-based restorative therapies to enable reproducible and effective near-term clinical interventions.
- Published
- 2021
- Full Text
- View/download PDF
23. Enhanced Recovery After Surgery (ERAS) for Cranial Tumor Resection: A Review
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Jacob D, Greisman, Zachary T, Olmsted, Patrick J, Crorkin, Colin A, Dallimore, Vadim, Zhigin, Artur, Shlifer, Anupama D, Bedi, Jane K, Kim, Priscilla, Nelson, Heustein L, Sy, Kiran V, Patel, Jason A, Ellis, John, Boockvar, David J, Langer, and Randy S, D'Amico
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Postoperative Care ,Postoperative Complications ,Elective Surgical Procedures ,Humans ,Surgery ,Neurology (clinical) ,Length of Stay ,Enhanced Recovery After Surgery ,Perioperative Care - Abstract
Enhanced Recovery After Surgery (ERAS) protocols describe a standardized method of preoperative, perioperative, and postoperative care to enhance outcomes and minimize complication risks surrounding elective surgical intervention. A growing body of evidence is being generated as we learn to apply principles of ERAS standardization to neurosurgical patients. First applied in spinal surgery, ERAS protocols have been extended to cranial neuro-oncologic procedures. This review synthesizes recent findings to generate evidence-based guidelines to manage neurosurgical oncology patients with standardized systems and assess ability of these systems to coordinate multidisciplinary, patient-centric care efforts. Furthermore, we highlight the potential usefulness of multimedia, app-based communication platforms to facilitate patient education, autonomy, and team communication within each of the 3 settings.
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- 2022
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24. Transplantable human motor networks as a neuron-directed strategy for spinal cord injury
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Tatiana Wolfe, Cinzia Stigliano, Janet L. Paluh, Philip J. Horner, Jose Cibelli, Annalisa Scimemi, and Zachary T. Olmsted
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Multidisciplinary ,Science ,Bioengineering ,Biology ,medicine.disease ,Article ,Neural stem cell ,Transplantation ,Electrophysiology ,Calcium imaging ,medicine.anatomical_structure ,nervous system ,Biological neural network ,medicine ,Tissue engineering ,Neuron ,Progenitor cell ,Neuroscience ,Spinal cord injury - Abstract
Summary To repair neural circuitry following spinal cord injury (SCI), neural stem cell (NSC) transplantation has held a primary focus; however, stochastic outcomes generate challenges driven in part by NSC differentiation and tumor formation. The recent ability to generate regionally specific neurons and their support cells now allows consideration of directed therapeutic approaches with pre-differentiated and networked spinal neural cells. Here, we form encapsulated, transplantable neuronal networks of regionally matched cervical spinal motor neurons, interneurons, and oligodendrocyte progenitor cells derived through trunk-biased neuromesodermal progenitors. We direct neurite formation in alginate-based neural ribbons to generate electrically active, synaptically connected networks, characterized by electrophysiology and calcium imaging before transplantation into rodent models of contused SCI for evaluation at 10-day and 6-week timepoints. The in vivo analyses demonstrate viability and retention of interconnected synaptic networks that readily integrate with the host parenchyma to advance goals of transplantable neural circuitry for SCI treatment., Graphical abstract, Highlights • Neuromesodermal progenitor derivation of human spinal neurons as therapeutic cells • Neural ribbons bridge in vitro network formation and in vivo host transplantation • In vivo visualization of encapsulated graft placement with magnetic resonance imaging • Six-week viability of human neuronal networks with OPCs in rat contusion SCI, Neuroscience; Bioengineering; Tissue engineering
- Published
- 2021
25. Integrating central and peripheral neurons in elongating multi-lineage-organized gastruloids
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Janet L. Paluh and Zachary T. Olmsted
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Lineage (genetic) ,medicine.anatomical_structure ,Period (gene) ,Peripheral nervous system ,medicine ,Premovement neuronal activity ,Neural crest ,Organogenesis ,Biology ,Stem cell ,Spinal cord ,Neuroscience - Abstract
Human stem cell technologies including self-assembling 3D tissue models provide unprecedented access to early neurodevelopment and enable fundamental insights into neuropathologies. Gastruloid models have yet to be used to investigate the developing nervous system. Here we generate elongating multi-lineage-organized (EMLO) gastruloids with trunk identity that co-develop central and peripheral nervous system (CNS, PNS) correlates. We track migrating neural crest cells that differentiate to form peripheral neurons integrated with an upstream spinal cord region. This follows initial EMLO polarization events, and is coordinated with primitive gut tube elongation and cardiomyocyte differentiation. By immunofluorescence of multi-lineage and functional biomarkers, we evaluate EMLOs over a twenty-two day period, and apply them to investigate the impact of mu opioid receptor modulation on neuronal activity. This comprehensive study demonstrates a novel combined CNS-PNS model of early organogenesis and integration events in the trunk to benefit human biomedical research.
- Published
- 2020
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26. Co-development of central and peripheral neurons with trunk mesendoderm in human elongating multi-lineage organized gastruloids
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Janet L. Paluh and Zachary T. Olmsted
- Subjects
0301 basic medicine ,Nervous system ,Central Nervous System ,Science ,Morphogenesis ,General Physics and Astronomy ,Gene Expression ,Organogenesis ,Biology ,SOXE Transcription Factors ,General Biochemistry, Genetics and Molecular Biology ,Article ,03 medical and health sciences ,0302 clinical medicine ,Pluripotent stem cells ,Peripheral Nervous System ,medicine ,Humans ,Tube formation ,Multidisciplinary ,Neural crest ,Cell Differentiation ,Forkhead Transcription Factors ,General Chemistry ,030104 developmental biology ,medicine.anatomical_structure ,Phenotype ,Transcription Factor AP-2 ,Neural Crest ,embryonic structures ,Pattern formation ,Endoderm ,Stem cell ,Neuroscience ,030217 neurology & neurosurgery ,Biomarkers ,Neural patterning - Abstract
Stem cell technologies including self-assembling 3D tissue models provide access to early human neurodevelopment and fundamental insights into neuropathologies. Gastruloid models have not been used to investigate co-developing central and peripheral neuronal systems with trunk mesendoderm which we achieve here in elongating multi-lineage organized (EMLO) gastruloids. We evaluate EMLOs over a forty-day period, applying immunofluorescence of multi-lineage and functional biomarkers, including day 16 single-cell RNA-Seq, and evaluation of ectodermal and non-ectodermal neural crest cells (NCCs). We identify NCCs that differentiate to form peripheral neurons integrated with an upstream spinal cord region after day 8. This follows initial EMLO polarization events that coordinate with endoderm differentiation and primitive gut tube formation during multicellular spatial reorganization. This combined human central-peripheral nervous system model of early organogenesis highlights developmental events of mesendoderm and neuromuscular trunk regions and enables systemic studies of tissue interactions and innervation of neuromuscular, enteric and cardiac relevance., The authors generate EMLOs (elongating multi-lineage organized gastruloids): organoids that self-organize to form compartments with characteristics of the central nervous system, peripheral nervous system, mesenchyme, and gut tube.
- Published
- 2020
27. Can dogs and cats really help our spinal cord stimulation patients?
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Eleni N. Varelas, Marisa DiMarzio, Zachary T. Olmsted, Julie G. Pilitsis, Olga Khazen, Michelle Williams, and Breanna L. Sheldon
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Male ,medicine.medical_specialty ,Spinal cord stimulation ,Disability Evaluation ,Rating scale ,medicine ,Animals ,Humans ,Failed Back Surgery Syndrome ,Depression (differential diagnoses) ,Aged ,Spinal Cord Stimulation ,business.industry ,Human-Animal Bond ,Beck Depression Inventory ,Chronic pain ,General Medicine ,Pets ,Middle Aged ,medicine.disease ,humanities ,Oswestry Disability Index ,Treatment Outcome ,McGill Pain Questionnaire ,Physical therapy ,Neuralgia ,Surgery ,Pain catastrophizing ,Female ,Neurology (clinical) ,business ,Complex Regional Pain Syndromes - Abstract
Pet ownership has been shown to decrease morbidity and mortality in several aspects of health but has not been studied in chronic pain patients. We evaluate whether subjects who underwent spinal cord stimulation (SCS) and own a pet have improved outcomes compared to non-pet owners.After obtaining IRB approval, we re-contacted 38 subjects who underwent SCS surgery with preoperative and 1-year postoperative data on Numerical Rating Scale (NRS), McGill Pain Questionnaire (MPQ), Oswestry Disability Index (ODI), Beck Depression Inventory (BDI), and Pain Catastrophizing scale (PCS). We examined influence of pets and pet ownership-specific behaviors on improvement in SCS outcomes.Patients included 24 males/14 females with a mean age of 59.9 ± 11.5 years. At mean follow-up of 12.2 months (range 10-14), there were improvements in NRS, ODI, BDI, PCS and MPQ. Twenty subjects owned pets and 18 did not; all believed pet ownership could improve health. Pet owners improved more on NRS-right now (p = 0.05) and BDI (p = 0.05), and were more satisfied with SCS (p = 0.04). No significant improvement was seen in ODI, MPQ, or PCS. However, PCS did improve in pet owners who exercised their pet (PCS-total, p 0.01; PCS-helplessness, p 0.01; PCS-rumination, p = 0.05; PCS-magnification, p = 0.02).We provide preliminary evidence that pet ownership is associated with improved pain, depression and SCS satisfaction. Exercising with a pet also appears to be beneficial in limiting pain catastrophizing. Pets show promise as a novel means to improve patient SCS outcomes.
- Published
- 2020
28. Neuromesodermal Progenitors Advance Network Formation of Spinal Neurons and Support Cells in Neural Ribbons In Vitro and Unprotected Survival in a Rat Subacute Contusion Model
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Annalisa Scimemi, Brandon Marzullo, Jose Cibelli, Philip J. Horner, Cinzia Stigliano, Janet L. Paluh, Tatiana Wolfe, and Zachary T. Olmsted
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education.field_of_study ,Cell type ,Population ,Cell ,Synaptogenesis ,Biology ,Neural stem cell ,Transplantation ,medicine.anatomical_structure ,medicine ,Progenitor cell ,Stem cell ,education ,Neuroscience - Abstract
Improved human stem cell interventions to treat CNS trauma requires continued expansion of in vitro models and delivery platforms to fill gaps in analysis and treatment. Transplanted neural stem cells (NSCs) face unique, multi-faceted challenges beyond survival that include differentiation, maturation, and integration into a complex cytokine-releasing microenvironment that impinges on a multipotent cell type. Alternate strategies to transplant neurons and neuronal networks deserve reevaluation, particularly since novel differentiation protocols mimicking region-specific developmental and positional cues have recently emerged. To investigate transplantation of neurons and their early networks, we generate in vitro neural ribbons containing spinal neurons and support cells anatomically matched for cervical spinal cord injury (SCI). These glutamate-responsive, electrically-active neural ribbons apply a new hiPSC differentiation strategy transiting through neuromesodermal progenitors (NMps) to derive developmentally relevant spinal motor neurons (SMNs), interneurons (INs), and oligodendrocyte progenitor cells (OPCs). Bioinformatic profiling validates region-specific identities. Neurons and neuronal networks are functionally evaluated for action potential firing, calcium signaling, population activity, and synaptogenesis. NMp-derived neurons survive in vivo within the subacute phase hemi-contusion injury cavity when delivered either as free suspension or as encapsulated networks of pre-formed CNS cytoarchitectures. Delivery as encapsulated networks further supports survival of lower cell numbers and rapid graft penetration into host tissue. Neural network ribbons therefore provide a novel intermediary approach between cell suspensions and complex organoids for investigating network formation and early transplantation events with hiPSC-derived neurons, providing flexibility to rapidly tune cell type(s), cell ratios, and traceable biomarkers.Significance StatementIn the two decades since human stem cell technologies have emerged, the challenge has remained to improve the developmentally relevant derivation of therapeutic cells. The ability to now generate anatomically matched neurons for SCI necessitates a re-evaluation of these cells and their networks in vitro and in vivo. In this study, we apply developmental cues via neuromesodermal progenitors to generate spinal neurons from hiPSCs. Genetic and functional evaluation of these cells as in vitro neuronal networks, due to their capacity to survive and graft effectively within the rat subacute contusion cavity, offer novel approaches for customizing SCI transplantation. This work demonstrates a strategy to develop transplantable, chemically-responsive networks linking in vitro models with injury customization towards improved in vivo outcomes.
- Published
- 2020
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29. Fabrication of homotypic neural ribbons as a multiplex platform optimized for spinal cord delivery
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Mattheos A. G. Koffas, Asher Williams, Robert J. Linhardt, Jose Cibelli, Cinzia Stigliano, Yubing Xie, Zachary T. Olmsted, Janet L. Paluh, Philip J. Horner, Fuming Zhang, and Abinaya Badri
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Cell death in the nervous system ,Neuroimmunology ,Glycobiology ,lcsh:Medicine ,Stem cells ,Chondroitin ABC Lyase ,Imaging ,Extracellular matrix ,Cell therapy ,Cell growth ,Neural Stem Cells ,Multiplex ,Stem cells in the nervous system ,lcsh:Science ,Cytoskeleton ,Cell proliferation ,Microscopy ,Multidisciplinary ,Chemistry ,Biological techniques ,Chemical biology ,Neural stem cell ,Enzymes ,medicine.anatomical_structure ,Spinal Cord ,Differentiation ,Pattern formation ,Female ,Experimental organisms ,Stem cell ,Cell signalling ,Biotechnology ,Cell death ,Pluripotency ,Cell biology ,Cell division ,Bioinformatics ,Neurogenesis ,Stem-cell differentiation ,Cellular imaging ,Article ,Glial scar ,In vivo ,Developmental biology ,medicine ,Animals ,Humans ,Implants ,Rats, Long-Evans ,Spinal Cord Injuries ,Biological models ,lcsh:R ,Model vertebrates ,Cell adhesion ,Glial biology ,Recovery of Function ,Spinal cord ,Disease Models, Animal ,lcsh:Q ,Biomaterials - cells ,Peripheral nervous system ,Neuroscience ,Stem-cell niche ,Stem Cell Transplantation - Abstract
Cell therapy for the injured spinal cord will rely on combined advances in human stem cell technologies and delivery strategies. Here we encapsulate homotypic spinal cord neural stem cells (scNSCs) in an alginate-based neural ribbon delivery platform. We perform a comprehensive in vitro analysis and qualitatively demonstrate graft survival and injury site retention using a rat C4 hemi-contusion model. Pre-configured neural ribbons are transport-stable modules that enable site-ready injection, and can support scNSC survival and retention in vivo. Neural ribbons offer multifunctionality in vitro including co-encapsulation of the injury site extracellular matrix modifier chondroitinase ABC (chABC), tested here in glial scar models, and ability of cervically-patterned scNSCs to differentiate within neural ribbons and project axons for integration with 3-D external matrices. This is the first extensive in vitro characterization of neural ribbon technology, and constitutes a plausible method for reproducible delivery, placement, and retention of viable neural cells in vivo.
- Published
- 2020
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30. Neural Ribbons Stabilize Network Formation for CNS Delivery
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Annalisa Scimemi, Jose B. Cibelli, Zachary T. Olmsted, Cinzia Stigliano, Brandon Marzullo, Janet L. Paluh, and Philip J. Horner
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Nervous system ,Transplantation ,medicine.anatomical_structure ,medicine ,Synaptogenesis ,Biological neural network ,Biology ,Spinal cord ,Induced pluripotent stem cell ,Neuroscience ,Neural stem cell ,Progenitor - Abstract
As a renewable source of progenitor and mature cell types, human iPSCs offer promise to replace or restore impaired neural circuits in the injured nervous system. CNS delivery of neural stem cell suspensions lacking pre-connected networks requires their differentiation, maturation, and connectivity in vivo. By contrast, integrating specified neural networks and their support cells with biomaterials allows the advancement of tailored transplantation strategies. Here, we demonstrate encapsulated 3D electrically-active and glutamate-responsive neural ribbon networks using differentiated hiPSC-derived spinal motor neurons and oligodendrocyte progenitor support cells. We apply comprehensive multi-parameter analysis in vitro to interrogate synaptogenesis, myotube innervation, action potential firing and relevant bioinformatics profiles. As proof-of-principle for spinal cord delivery, we inject neural ribbons within the contused injury cavity in rat and qualitatively demonstrate cell viability. Neural ribbons therefore constitute a tunable method to deliver pre-configured, physiologically-matched functional cytoarchitectures to the CNS.
- Published
- 2020
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31. The Human Embryoid Body Cystic Core Exhibits Architectural Complexity Revealed by use of High Throughput Polymer Microarrays
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Janet L. Paluh, Martin L. Tomov, and Zachary T. Olmsted
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chemistry.chemical_classification ,education.field_of_study ,Polymers and Plastics ,Cell ,Population ,Bioengineering ,Nanotechnology ,Embryoid body ,Polymer ,Biology ,Embryonic stem cell ,Cell biology ,Biomaterials ,Multicellular organism ,medicine.anatomical_structure ,chemistry ,Materials Chemistry ,medicine ,DNA microarray ,education ,Induced pluripotent stem cell ,Biotechnology - Abstract
In pluripotent stem cell differentiation, embryoid bodies (EBs) provide a three-dimensional [3D] multicellular precursor in lineage specification. The internal structure of EBs is not well characterized yet is predicted to be an important parameter to differentiation. Here, we use custom SU-8 molds to generate transparent lithography-templated arrays of polydimethylsiloxane (LTA-PDMS) for high throughput analysis of human embryonic stem cell (hESC) EB formation and internal architecture. EBs formed in 200 and 500 μm diameter microarray wells by use of single cells, 2D clusters, or 3D early aggregates were compared. We observe that 200 μm EBs are monocystic versus 500 μm multicystic EBs that contain macro, meso and microsized cysts. In adherent differentiation of 500 μm EBs, the multicystic character impairs the 3D to 2D transition creating non-uniform monolayers. Our findings reveal that EB core structure has a size-dependent character that influences its architecture and cell population uniformity during early differentiation.
- Published
- 2015
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32. Functional replacement of fission yeast γ-tubulin small complex proteins Alp4 and Alp6 by human GCP2 and GCP3
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Timothy D. Riehlman, Lan Seo, Zachary T. Olmsted, Leilani O. Cruz, Carmen N. Branca, Adam M. Winnie, and Janet L. Paluh
- Subjects
Models, Molecular ,Fission ,Molecular Sequence Data ,Cell Biology ,Biology ,Fusion protein ,Protein Structure, Secondary ,Yeast ,Cell biology ,Tubulin ,Microtubule ,Schizosaccharomyces ,biology.protein ,Humans ,Amino Acid Sequence ,Schizosaccharomyces pombe Proteins ,Microtubule-Associated Proteins ,Gene ,Function (biology) ,Microtubule nucleation - Abstract
Summary Microtubule-organizing centers such as the γ-tubulin ring complex (γ-TuRC) act as a template for polarized growth and regulation of microtubules that are essential for diverse cellular structures and processes in eukaryotes. New structural models of the budding yeast γ-tubulin small complex (γ-TuSC) of the γ-TuRC combined with functional studies done in multiple eukaryotes are revealing the first mechanistic clues into control of microtubule nucleation and organization. Cross-species studies of human and budding yeast γ-TuSC proteins in fission yeast revealed conserved and divergent structural and functional features of the γ-TuSC. We show genetically that GCP3/Spc98 function is fully conserved with Alp6 across species but that functional differences exist between GCP2/Spc97 and Alp4. By further analysis of human γ-TuSC proteins, we found that GCP3 assembles normally into the >2000 kDa fission yeast γ-TuRC and that the GCP3 gene replaces fission yeast alp6. Interestingly, human GCP2 replaces the essential alp4 gene but is unable to rescue a normally recessive G1 defect of the alp4-1891 allele that results in loss of γ-TuRC from poles in subsequent cell cycles. Biochemically, GCP2 incorporation into fission yeast γ-TuRC is limited in the presence of Alp4; instead, the bulk of GCP2 fractionates as smaller complexes. By generating a functional Alp4–GCP2 chimeric protein we determined that the GCP2 N-terminal domain limits its ability to fully displace or compete with Alp4 during γ-TuRC assembly. Our findings have broad importance for understanding the essential domains of γ-TuSC proteins in the γ-TuRC mechanism.
- Published
- 2013
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33. Distinct and Shared Determinants of Cardiomyocyte Contractility in Multi-Lineage Competent Ethnically Diverse Human iPSCs
- Author
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Janet L. Paluh, Eda Gongorurler, Maria Tsompana, Zachary T. Olmsted, Hasan H. Otu, Jose B. Cibelli, Martin L. Tomov, Haluk Dogan, Michael J. Buck, and Eun Ah Chang
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0301 basic medicine ,Cell type ,Lineage (genetic) ,Cellular differentiation ,Induced Pluripotent Stem Cells ,Computational biology ,Biology ,Article ,Transcriptome ,03 medical and health sciences ,Ethnicity ,Humans ,Myocytes, Cardiac ,Precision Medicine ,Induced pluripotent stem cell ,Epigenomics ,Multidisciplinary ,business.industry ,Gene Expression Regulation, Developmental ,Cell Differentiation ,030104 developmental biology ,Personalized medicine ,business ,Reprogramming ,Biomarkers - Abstract
The realization of personalized medicine through human induced pluripotent stem cell (iPSC) technology can be advanced by transcriptomics, epigenomics, and bioinformatics that inform on genetic pathways directing tissue development and function. When possible, population diversity should be included in new studies as resources become available. Previously we derived replicate iPSC lines of African American, Hispanic-Latino and Asian self-designated ethnically diverse (ED) origins with normal karyotype, verified teratoma formation, pluripotency biomarkers, and tri-lineage in vitro commitment. Here we perform bioinformatics of RNA-Seq and ChIP-seq pluripotency data sets for two replicate Asian and Hispanic-Latino ED-iPSC lines that reveal differences in generation of contractile cardiomyocytes but similar and robust differentiation to multiple neural, pancreatic, and smooth muscle cell types. We identify shared and distinct genes and contributing pathways in the replicate ED-iPSC lines to enhance our ability to understand how reprogramming to iPSC impacts genes and pathways contributing to cardiomyocyte contractility potential.
- Published
- 2016
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34. Derivation of Ethnically Diverse Human Induced Pluripotent Stem Cell Lines
- Author
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Janet L. Paluh, Eun Ah Chang, Jose B. Cibelli, Zachary T. Olmsted, Steven T. Suhr, Martin L. Tomov, and Jiesi Luo
- Subjects
Mesoderm ,Cellular differentiation ,Genetic Vectors ,Induced Pluripotent Stem Cells ,Karyotype ,Ectoderm ,Embryoid body ,Biology ,Article ,Cell Line ,Mice ,Gene Order ,medicine ,Ethnicity ,Animals ,Humans ,Cell Lineage ,Transgenes ,Induced pluripotent stem cell ,Embryoid Bodies ,Multidisciplinary ,Gene Expression Profiling ,Endoderm ,Teratoma ,Genetic Variation ,Cell Differentiation ,Fibroblasts ,Cell biology ,Gene expression profiling ,medicine.anatomical_structure ,Cell Transformation, Neoplastic ,Stem cell ,Biomarkers - Abstract
The human genome with all its ethnic variations contributes to differences in human development, aging, disease, repair and response to medical treatments and is an exciting area of research and clinical study. The availability of well-characterized ethnically diverse stem cell lines is limited and has not kept pace with other advances in stem cell research. Here we derived xenofree ethnically diverse-human induced pluripotent stem cell (ED-iPSC) lines from fibroblasts obtained from individuals of African American, Hispanic-Latino, Asian and Caucasian ethnic origin and have characterized the lines under a uniform platform for comparative analysis. Derived ED-iPSC lines are low passage number and evaluated in vivo by teratoma formation and in vitro by high throughput microarray analysis of EB formation and early differentiation for tri-lineage commitment to endoderm, ectoderm and mesoderm. These new xenofree ED-iPSC lines represent a well-characterized valuable resource with potential for use in future research in drug discovery or clinical investigations.
- Published
- 2015
35. The Human Embryoid Body Cystic Core Exhibits Architectural Complexity Revealed by use of High Throughput Polymer Microarrays
- Author
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Martin L, Tomov, Zachary T, Olmsted, and Janet L, Paluh
- Subjects
Tissue Array Analysis ,Humans ,Cell Differentiation ,Dimethylpolysiloxanes ,Embryoid Bodies - Abstract
In pluripotent stem cell differentiation, embryoid bodies (EBs) provide a three-dimensional [3D] multicellular precursor in lineage specification. The internal structure of EBs is not well characterized yet is predicted to be an important parameter to differentiation. Here, we use custom SU-8 molds to generate transparent lithography-templated arrays of polydimethylsiloxane (LTA-PDMS) for high throughput analysis of human embryonic stem cell (hESC) EB formation and internal architecture. EBs formed in 200 and 500 μm diameter microarray wells by use of single cells, 2D clusters, or 3D early aggregates were compared. We observe that 200 μm EBs are monocystic versus 500 μm multicystic EBs that contain macro, meso and microsized cysts. In adherent differentiation of 500 μm EBs, the multicystic character impairs the 3D to 2D transition creating non-uniform monolayers. Our findings reveal that EB core structure has a size-dependent character that influences its architecture and cell population uniformity during early differentiation.
- Published
- 2015
36. Kinesin-14 and kinesin-5 antagonistically regulate microtubule nucleation by γ-TuRC in yeast and human cells
- Author
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Janet L. Paluh, Timothy D. Riehlman, Zachary T. Olmsted, and Andrew G. Colliver
- Subjects
Kinesins ,General Physics and Astronomy ,Breast Neoplasms ,Spindle Apparatus ,macromolecular substances ,Biology ,Microtubules ,Article ,General Biochemistry, Genetics and Molecular Biology ,Spindle pole body ,Tubulin ,Microtubule ,Cell Line, Tumor ,Chromosome Segregation ,Schizosaccharomyces ,Humans ,Mitosis ,Microtubule nucleation ,Microbial Viability ,Multidisciplinary ,Microtubule organizing center ,General Chemistry ,Protein Structure, Tertiary ,Cell biology ,Spindle apparatus ,Mutation ,MCF-7 Cells ,biology.protein ,Kinesin ,Female ,Schizosaccharomyces pombe Proteins ,Peptides ,Microtubule-Organizing Center ,Protein Binding - Abstract
Bipolar spindle assembly is a critical control point for initiation of mitosis through nucleation and organization of spindle microtubules and is regulated by kinesin-like proteins. In fission yeast, the kinesin-14 Pkl1 binds the γ-tubulin ring complex (γ-TuRC) microtubule-organizing centre at spindle poles and can alter its structure and function. Here we show that kinesin-14 blocks microtubule nucleation in yeast and reveal that this inhibition is countered by the kinesin-5 protein, Cut7. Furthermore, we demonstrate that Cut7 binding to γ-TuRC and the Cut7 BimC domain are both required for inhibition of Pkl1. We also demonstrate that a yeast kinesin-14 peptide blocks microtubule nucleation in two human breast cancer cell lines, suggesting that this mechanism is evolutionarily conserved. In conclusion, using genetic, biochemical and cell biology approaches we uncover antagonistic control of microtubule nucleation at γ-TuRC by two kinesin-like proteins, which may represent an attractive anti-mitotic target for cancer therapies., Mitotic spindle assembly requires strict control of microtubule nucleation by γ-tubulin ring complexes. Olmsted et al. report that the kinesin-like proteins Pkl1 and Cut7 antagonistically regulate nucleation in fission yeast, and show that a Pkl1 peptide blocks spindle assembly in human cancer cells.
- Published
- 2014
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37. Novel Kinesin Regulators of Gamma-TuRC
- Author
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Timothy D. Riehlman, Janet L. Paluh, Andrew G. Colliver, Zachary T. Olmsted, and Adam M. Winnie
- Subjects
Kinetochore ,Microtubule ,Biophysics ,Spindle organization ,Kinesin ,Microtubule organizing center ,Biology ,Spindle pole body ,Cell biology ,Microtubule nucleation ,Spindle apparatus - Abstract
Mitotic spindle assembly is a critical control point in eukaryotic chromosome segregation. In fission yeast conserved mitotic kinesin-like proteins (Klps) Kinesin-14 and Kinesin-5 are emerging as novel regulators of the γ-tubulin ring complex (γ-TuRC) MTOC. While these Klps typically participate in microtubule roles for spindle assembly, alternatively in fission yeast they localize to γ-TuRC and when co-deleted a bipolar spindle forms. Our analysis by genetics, biochemistry, cell biology and nanotechnology provides new knowledge on mitotic mechanisms in S. pombe. Previous work from our lab and others uncovered a novel functional relationship between Kinesin-14 Pkl1 and all proteins of the γ-tubulin small complex (γ-TuSC). We demonstrated that Pkl1 binds γ-TuRC through Motor and Tail interactions to directly regulate its function. A Pkl1 Tail peptide is sufficient in vitro and disrupts γ-TuRC structure by removal of γ-tubulin subunits (Cell Cycle 2013), an action that is reversible. New data from our lab indicates that the essential Kinesin-5 Cut7 is actually dispensable in the absence of Pkl1 with which it shares an important antagonistic MTOC regulatory relationship. Cut-7 associates with FPLC purified γ-TuRC and binds to γ-tubulin similarly as Pkl1. We demonstrate in vivo that Pkl1 blocks microtubule nucleation from γ-TuRC and additionally influences spindle microtubule numbers and microtubule overlap. Kinetochore-based microtubule motors Klp5 and Klp6 may facilitate spindle organization, since triple mutants of Pkl1, Cut7 and either Kinesin-6 Klp9 or Kinesin-14 Klp2 are viable. Previously we showed in vivo that human Kinesin-14 HSET, but not Drosophila Ncd, functionally replaces Pkl1 and more recently that human γ-TuSC proteins GCP2 and GCP3 replace fission yeast Alp4 and Alp6 (JCS 2013). Our research highlights conserved in vivo functions of γ-TuSC and provides a new model of spindle assembly in S. pombe.
- Published
- 2014
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38. Kinesin-14 Pkl1 targets γ-tubulin for release from the γ-tubulin ring complex (γ-TuRC)
- Author
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Leilani O. Cruz, Carmen N. Branca, Janet L. Paluh, Timothy D. Riehlman, Zachary T. Olmsted, and Andrew G. Colliver
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Molecular Sequence Data ,Kinesins ,Plasma protein binding ,Spindle Apparatus ,Biology ,Models, Biological ,Motor protein ,03 medical and health sciences ,Structure-Activity Relationship ,spindle assembly ,0302 clinical medicine ,Microtubule ,Tubulin ,Report ,Schizosaccharomyces ,Amino Acid Sequence ,Molecular Biology ,Mitosis ,030304 developmental biology ,0303 health sciences ,γ-TuSC ,Microtubule organizing center ,Cell Biology ,microtubule motor ,Cell biology ,Spindle apparatus ,Protein Structure, Tertiary ,MTOC ,Multiprotein Complexes ,biology.protein ,Kinesin ,Schizosaccharomyces pombe Proteins ,030217 neurology & neurosurgery ,Developmental Biology ,Protein Binding - Abstract
The γ-tubulin ring complex (γ-TuRC) is a key part of microtubule-organizing centers (MTOCs) that control microtubule polarity, organization and dynamics in eukaryotes. Understanding regulatory mechanisms of γ-TuRC function is of fundamental importance, as this complex is central to many cellular processes, including chromosome segregation, fertility, neural development, T-cell cytotoxicity and respiration. The fission yeast microtubule motor kinesin-14 Pkl1 regulates mitosis by binding to the γ-tubulin small complex (γ-TuSC), a subunit of γ-TuRC. Here we investigate the binding mechanism of Pkl1 to γ-TuSC and its functional consequences using genetics, biochemistry, peptide assays and cell biology approaches in vivo and in vitro. We identify two critical elements in the Tail domain of Pkl1 that mediate γ-TuSC binding and trigger release of γ-tubulin from γ-TuRC. Such action disrupts the MTOC and results in failed mitotic spindle assembly. This study is the first demonstration that a motor protein directly affects the structural composition of the γ-TuRC, and we provide details of this mechanism that may be of broad biological importance.
- Published
- 2013
39. Molecular Motors
- Author
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Timothy D. Riehlman, Zachary T. Olmsted, and Janet L. Paluh
- Published
- 2012
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40. Cover Picture: Macromol. Biosci. 7/2015
- Author
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Martin L. Tomov, Zachary T. Olmsted, and Janet L. Paluh
- Subjects
Biomaterials ,Geography ,Polymers and Plastics ,Materials Chemistry ,Bioengineering ,Cover (algebra) ,Physical geography ,Biotechnology - Published
- 2015
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41. Metamorphic Pattern Formation and Deformation: In Vivo and In Vitro Mechanisms
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Carmen N. Branca, Janet L. Paluh, Zachary T. Olmsted, Tim D. Riehlman, Adam M. Winnie, and Andrew G. Colliver
- Subjects
Chromosome segregation ,Microtubule ,Mechanism (biology) ,Centrosome ,Biophysics ,Microtubule organizing center ,Biomimetics ,Biology ,Spindle pole body ,Spindle apparatus ,Cell biology - Abstract
Mitotic spindle formation into a bipolar structure suitable for chromosome segregation requires reorganization of the interphase microtubule cytoskeleton. A multi-protein complex at spindle poles acts as a microtubule organizing center (MTOC). Microtubules are assembled from this site through the addition of α/β-tubulin heterodimers onto a template complex containing γ-tubulin (γ-TuSC) imbedded into a larger macromolecular ring (γ-TuRC). Our goal is to apply insights on patterning biological polymers in vivo to development of hybrid biosynthetic systems capable of utilizing microtubules in self-assembling metamorphic patterns including parquet deformation behavior. Dynamic patterning has applications in biosensing, materials design and new nanomanufacturing paradigms. Building off of recent structural insights into γ-TuSC and GCP4 with our own detailed genetic analysis, site-directed mutagenesis, cross-species functional studies and biochemical purification and nucleation assays we provide novel insights on MTOC structural requirements to nucleation. Additionally we have identified an associated regulatory mechanism utilized by a subset of Kinesin-14 members for targeting and regulatory interference at poles (TRIP) distinct from microtubule targeting elements found in other Kinesin-14 members such as Drosophila Ncd. Our in vivo analysis supports application of the recent Kollman-Agard structure as a general eukaryotic model however with species-specific protein and domain constraints as well as contact sites for Kinesin-14 regulation of γ-TuRC. Our findings have broad application towards a general understanding of cellular MTOC machinery and reiterates the flexibility of Klps to localize to multiple spindle compartments and participate in a diversity of cellular roles. Natural cellular machines provide tools and inspiration for biomimicry and for resolution of societal grand challenges through redirected applications. Using tools available through the semiconductor industry and materials science we are generating artificial centrosomes (ACENs) from nanoparticles to act as simplified nucleation centers for use in synthetic self-assembly paradigms.
- Published
- 2013
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42. The kinesin–tubulin complex: considerations in structural and functional complexity
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Andrew G. Colliver, Zachary T. Olmsted, and Janet L. Paluh
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Tubulin complex ,Histology ,Structural Biology ,Chemistry ,Biophysics ,Kinesin ,macromolecular substances ,Cell Biology ,Biochemistry - Published
- 2015
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43. Moving Towards Self-Assembling Machines: Harnessing Spindle Components for Biosynthetic Devices
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Timothy D. Riehlman, Zachary T. Olmsted, Ani Levine, Carmen N. Branca, Janet L. Paluh, and Laura Patrick
- Subjects
Chromosome segregation ,Tubulin ,biology ,Microtubule ,Biophysics ,biology.protein ,Interphase ,Microtubule organizing center ,Multipolar spindles ,Spindle pole body ,Microtubule nucleation ,Cell biology - Abstract
The remarkably dynamic and complex manufacturing environment of the eukaryotic cell is currently unrivaled by manmade systems. Through dissection and harnessing of biological machines and underlying processes, and merger with synthetic materials, we hope to scale manufacturing into realms currently restricted from physical manipulation. Spindle assembly is the first critical step in chromosome segregation and a primary target for anti-cancer therapeutics. An assemblage of nanoscale components and communication networks must be integrated for spindle formation and function. We are applying nanotechnology in parallel with traditional methods of yeast genetics, timelapse microscopy, AFM and biochemistry. Dramatic reorganization of interphase microtubules into a bipolar organization for chromosome segregation requires focused nucleation from spindle pole body microtubule organizing centers (MTOCs). The γ-tubulin small complex (γ-TuSC) MTOC associates with growing microtubules and is part of a larger ring complex (γ-TuRC). The complex controls microtubule nucleation, organization and dynamics. Three conserved kinesin-like protein (Klp) families in fission yeast contribute in critical roles in spindle assembly. Kinesin-14 Pkl1 and Kinesin-5 associate with γ-TuSC at poles and provide counterbalanced roles in microtubule nucleation and organization, while Kinesin-6 acts on overlapping anti-parallel microtubules. The coupled action of the MTOC and Klps enables multiple levels of control. By purifying the γ-TuSC and γ-TuRC complexes from human and fission yeast cells using superose 6 FPLC chromatography, co-immunoprecipitation with magnetic beads and western analysis and attachment of these complexes to functionalized surfaces we are analyzing minimal components and frameworks for generating anti-parallel, bipolar and more complex microtubule array structures in the presence of multiple Klps. Our goal is to incorporate the MTOC, tubulin and multiple Klp families in different biosynthetic platforms to better understand self-assembling machines and transitional dynamic architectures thereby refining both in vivo models and in vitro advanced applications.
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