14 results on '"Zahra Sedghi"'
Search Results
2. An end-to-end approach to segmentation in medical images with CNN and posterior-CRF.
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Shuai Chen, Zahra Sedghi Gamechi, Florian Dubost, Gijs van Tulder, and Marleen de Bruijne
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- 2022
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3. Establishing a Data Fusion Water Resources Risk Map Based on Aggregating Drinking Water Quality and Human Health Risk Indices
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Zahra Sedghi, Rahim Barzegar, Ata Allah Nadiri, and Mohammad Reza Nikoo
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Geography, Planning and Development ,Aquatic Science ,human health risk assessment ,drinking water quality index ,non-carcinogenic ,data fusion ,water resources risk ,Biochemistry ,Water Science and Technology - Abstract
The Drinking Water Quality Index (DWQI) and the Human Health Risk Index (HHRI) are two of the most promising tools for assessing the health impact of water quality on humans. Each of these indices has its own ability to determine a specific level of safety for drinking, and their results may vary. This study aims to develop an aggregated index to identify vulnerable areas in relation to safe drinking water and, subsequently, risk areas for human health, particularly non-cancerous diseases, in the Maku–Bazargan–Poldasht area in NW Iran through the use of a data fusion technique. Nitrate (NO3−) and fluoride (F−) are the predominant contaminants that threaten the local population’s health. The DWQI revealed that the majority of the study sites had poor to improper quality for drinking water class. Health risk assessments showed an excessive potential for non-carcinogenic health risks because of high NO3− and F− exposure through drinking water. Children are at a higher risk for non-carcinogenic changes than adults, according to the total hazard index (THI; NO3− and F−), suggesting that locals have faced a lifetime risk of non-cancer changes as a consequence of their exposure to these pollutants. Using data fusion techniques can assist in developing a comprehensive water resources risk map for decision-making.
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- 2022
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4. Aorta and pulmonary artery segmentation using optimal surface graph cuts in non-contrast CT.
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Zahra Sedghi Gamechi, Andrés M. Arias Lorza, Jesper Holst Pedersen, and Marleen de Bruijne
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- 2018
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5. Mapping and aggregating groundwater quality indices for aquifer management using Inclusive Multiple Modeling practices
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Zahra Sedghi, Ali Asghar Rostami, Rahman Khatibi, Ata Allah Nadiri, Sina Sadeghfam, and Alireza Abdoallahi
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- 2022
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6. List of contributors
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Alireza Abdoallahi, Zaid Hazim Al-Saffar, Selvaraj Ambika, Danial Jahed Armagahni, Dipanjan Basu, Ramesh Murlidhar Bhatawdekar, Debarghya Chakraborty, Subhojit Chattaraj, Chin Siew Choo, Beste Cubukcuoglu, Deepthi Mary Dilip, Sufyan Ghani, Maryam Gharekhani, Mohammad Ali Ghorbani, Anasua GuhaRay, Koushik Halder, Dayang Zulaika Abang Hasbollah, Amal I. Hassan, Norhidayah Abdul Hassan, Dato Chengong Hock Soon, Samed Inyurt, Ramadhansyah Putra Jaya, Primož Jelušič, Rajesh Jha, Aleena Joy, Mohammad Rezaul Karim, Parthiban Kathirvel, Umair Khan, Rahman Khatibi, Anish Kumar, B.R.V. Susheel Kumar, Sunita Kumari, Mina Lee, Víctor Leiva, Carolina Marchant, Khairil Azman Masri, Mohd Firdaus Md Dan, Edy Tonnizam Mohamad, Sri Wiwoho Mudjanarko, Ata Allah Nadiri, Beeram Satya Narayana Reddy, Pranjal Pathak, S.K. Pramada, M.C. Raghucharan, Afia Rahman, Avtar K. Raina, Thendiyath Roshni, Ali Asghar Rostami, Sina Sadeghfam, Hosam M. Saleh, Helton Saulo, Zahra Sedghi, Muhammad Ikhsan Setiawan, Elham Shabani, Trilok Nath Singh, Sanjeev Sinha, Surendra Nadh Somala, Byomkesh Talukder, Aadil Towheed, Anamika Venu, J. Vijayalaxmi, Roberto Vila, Mohd Haziman Wan Ibrahim, Haryati Yaacob, Muhammad Faiz Bin Zainuddin, and Bojan Žlender
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- 2022
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7. Growth of the thoracic aorta in the smoking population: The Danish Lung Cancer Screening Trial
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Carlijn G.E. Thijssen, Isabella Kardys, Zaigham Saghir, Lidia R. Bons, Ricardo P.J. Budde, Jolien W. Roos-Hesselink, Jesper Holst Pedersen, Johanna J.M. Takkenberg, Marleen de Bruijne, Zahra Sedghi Gamechi, Klaus F. Kofoed, Cardiology, Radiology & Nuclear Medicine, and Cardiothoracic Surgery
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Male ,medicine.medical_specialty ,Longitudinal study ,Percentile ,Lung Neoplasms ,Denmark ,Population ,Aftercare ,Aorta, Thoracic ,Computed tomography ,030204 cardiovascular system & hematology ,Danish ,03 medical and health sciences ,0302 clinical medicine ,SDG 3 - Good Health and Well-being ,Internal medicine ,medicine.artery ,Multidetector Computed Tomography ,Humans ,Medicine ,Thoracic aorta ,030212 general & internal medicine ,education ,Early Detection of Cancer ,Netherlands ,education.field_of_study ,Smokers ,medicine.diagnostic_test ,business.industry ,Smoking ,Organ Size ,Middle Aged ,language.human_language ,Data Interpretation, Statistical ,cardiovascular system ,language ,Cardiology ,Female ,Radiography, Thoracic ,Aortic diameter ,Ex-Smokers ,Cardiology and Cardiovascular Medicine ,business ,Lung cancer screening - Abstract
Background Although the descending aortic diameter is larger in smokers, data about thoracic aortic growth is missing. Our aim is to present the distribution of thoracic aortic growth in smokers and to compare it with literature of the general population. Methods Current and ex-smokers aged 50–70 years from the longitudinal Danish Lung Cancer Screening Trial, were included. Mean and 95th percentile of annual aortic growth of the ascending aortic (AA) and descending aortic (DA) diameters were calculated with the first and last non-contrast computed tomography scans during follow-up. Determinants of change in aortic diameter over time were investigated with linear mixed models. Results A total of 1987 participants (56% male, mean age 57.4 ± 4.8 years) were included. During a median follow-up of 48 months, mean AA and DA growth rates were comparable between males (AA 0.12 ± 0.31 mm/year and DA 0.10 ± 0.30 mm/year) and females (AA 0.11 ± 0.29 mm/year and DA 0.13 ± 0.27 mm/year). The 95th percentile ranged from 0.42 to 0.47 mm/year, depending on sex and location. Aortic growth was comparable between current and ex-smokers and aortic growth was not associated with pack-years. Our findings are consistent with aortic growth rates of 0.08 to 0.17 mm/years in the general population. Larger aortic growth was associated with lower age, increased height, absence of medication for hypertension or hypercholesterolemia and lower Agatston scores. Conclusions This longitudinal study of smokers in the age range of 50–70 years shows that ascending and descending aortic growth is approximately 0.1 mm/year and is consistent with growth in the general population.
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- 2020
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8. Assessment of fully automatic segmentation of pulmonary artery and aorta on non-contrast CT with optimal surface graph cuts
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Zahra Sedghi Gamechi, Zaigham Saghir, Andres M. Arias-Lorza, Marleen de Bruijne, Daniel Bos, Radiology & Nuclear Medicine, and Epidemiology
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Aorta ,Lung Neoplasms ,business.industry ,Lumen (anatomy) ,General Medicine ,Pulmonary Artery ,Intensity (physics) ,SDG 3 - Good Health and Well-being ,medicine.artery ,Cut ,Descending aorta ,Ascending aorta ,Pulmonary artery ,Humans ,Medicine ,Segmentation ,Tomography, X-Ray Computed ,business ,Nuclear medicine ,Algorithms ,Early Detection of Cancer - Abstract
PURPOSE: Accurate segmentation of the pulmonary arteries and aorta is important due to the association of the diameter and the shape of these vessels with several cardiovascular diseases and with the risk of exacerbations and death in patients with Chronic Obstructive Pulmonary Disease (COPD). We propose a fully automatic method based on an optimal surface graph cut algorithm to quantify the full 3D shape and the diameters of the pulmonary arteries and aorta in non-contrast Computed Tomography (CT) scans.METHODS: The proposed algorithm first extracts seed points in the right and left pulmonary arteries, the pulmonary trunk, and the ascending and descending aorta by using multi-atlas registration. Subsequently, the centerlines of the pulmonary arteries and aorta are extracted by a minimum cost path tracking between the extracted seed points, with a cost based on a combination of lumen intensity similarity and multiscale medialness in 3 planes. The centerlines are refined by applying the path tracking algorithm to curved multi-planar reformatted scans and are then smoothed and dilated non-uniformly according to the extracted local vessel radius from the medialness filter. The resulting coarse estimates of the vessels are used as initialization for a graph-cut segmentation. Once the vessels are segmented, the diameters of the pulmonary artery (PA) and the ascending aorta (AA) and the ratio are automatically calculated both in a single axial slice and in a 10 mm volume around the automatically extracted pulmonary artery bifurcation level. The method is evaluated on non-contrast CT scans from the Danish Lung Cancer Screening Trial (DLCST). Segmentation accuracy is determined by comparing with manual annotations on 25 CT scans. Intra-class correlation (ICC) between manual and automatic diameters, both measured in axial slices at the pulmonary artery bifurcation level, is computed on an additional 200 CT scans. Repeatability of the automated 3D volumetric diameter and ratio calculations (perpendicular to the vessel axis) are evaluated on 118 scan-rescan pairs with an average in-between time of 3 months.RESULTS: We obtained a Dice segmentation overlap of 0.94 ± 0.02 for pulmonary arteries and 0.96 ± 0.01 for the aorta, with a mean surface distance of 0.62 ± 0.33 mm and 0.43 ± 0.07 mm, respectively. ICC between manual and automatic in-slice diameter measures was 0.92 for PA, 0.97 for AA, and 0.90 for the ratio, and for automatic diameters in 3D volumes around the pulmonary artery bifurcation level between scan and rescan were 0.89, 0.95, and 0.86, respectively.CONCLUSION: The proposed automatic segmentation method can reliably extract diameters of the large arteries in non-ECG-gated non-contrast CT scans such as are acquired in lung cancer screening. This article is protected by copyright. All rights reserved.
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- 2021
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9. Automated 3D segmentation and diameter measurement of the thoracic aorta on non-contrast enhanced CT
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Ricardo P.J. Budde, Marleen de Bruijne, Jesper Holst Pedersen, Daniel Bos, Zahra Sedghi Gamechi, Lidia R. Bons, Klaus F. Kofoed, Marco Giordano, Jolien W. Roos-Hesselink, Cardiology, Medical Informatics, Radiology & Nuclear Medicine, and Epidemiology
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Male ,medicine.medical_specialty ,Diameter measurement ,Computed Tomography Angiography ,Aorta, Thoracic ,Computed tomography, X-ray ,Thoracic aorta ,Three-dimensional image ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,0302 clinical medicine ,Computed Tomography ,Imaging, Three-Dimensional ,medicine.artery ,medicine ,Humans ,Radiology, Nuclear Medicine and imaging ,Segmentation ,Aorta ,Aged ,business.industry ,Ultrasound ,Reproducibility of Results ,General Medicine ,Repeatability ,Middle Aged ,Dilatation ,Computer-assisted image analysis ,Cross-Sectional Studies ,030220 oncology & carcinogenesis ,Descending aorta ,Pulmonary artery ,Radiographic Image Interpretation, Computer-Assisted ,Female ,Radiology ,business ,Tomography, X-Ray Computed ,Algorithms ,Biomedical engineering - Abstract
Objectives To develop and evaluate a fully automatic method to measure diameters of the ascending and descending aorta on non-ECG-gated, non-contrast computed tomography (CT) scans. Material and methods The method combines multi-atlas registration to obtain seed points, aorta centerline extraction, and an optimal surface segmentation approach to extract the aorta surface around the centerline. From the extracted 3D aorta segmentation, the diameter of the ascending and descending aorta was calculated at cross-sectional slices perpendicular to the extracted centerline, at the level of the pulmonary artery bifurcation, and at 1-cm intervals up to 3 cm above and below this level. Agreement with manual annotations was evaluated by dice similarity coefficient (DSC) for segmentation overlap, mean surface distance (MSD), and intra-class correlation (ICC) of diameters on 100 CT scans from a lung cancer screening trial. Repeatability of the diameter measurements was evaluated on 617 baseline-one year follow-up CT scan pairs. Results The agreement between manual and automatic segmentations was good with 0.95 ± 0.01 DSC and 0.56 ± 0.08 mm MSD. ICC between the diameters derived from manual and from automatic segmentations was 0.97, with the per-level ICC ranging from 0.87 to 0.94. An ICC of 0.98 for all measurements and per-level ICC ranging from 0.91 to 0.96 were obtained for repeatability. Conclusion This fully automatic method can assess diameters in the thoracic aorta reliably even in non-ECG-gated, non-contrast CT scans. This could be a promising tool to assess aorta dilatation in screening and in clinical practice. Key Points • Fully automatic method to assess thoracic aorta diameters. • High agreement between fully automatic method and manual segmentations. • Method is suitable for non-ECG-gated CT and can therefore be used in screening. Electronic supplementary material The online version of this article (10.1007/s00330-018-5931-z) contains supplementary material, which is available to authorized users.
- Published
- 2019
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10. Assessment of fully automatic segmentation of pulmonary artery and aorta on non-contrast CT with optimal surface graph cuts
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Gamechi, Zahra Sedghi, Arias-Lorza, Andres M, Saghir, Zaigham, Bos, Daniel, de Bruijne, Marleen, Gamechi, Zahra Sedghi, Arias-Lorza, Andres M, Saghir, Zaigham, Bos, Daniel, and de Bruijne, Marleen
- Abstract
PURPOSE: Accurate segmentation of the pulmonary arteries and aorta is important due to the association of the diameter and the shape of these vessels with several cardiovascular diseases and with the risk of exacerbations and death in patients with Chronic Obstructive Pulmonary Disease (COPD). We propose a fully automatic method based on an optimal surface graph cut algorithm to quantify the full 3D shape and the diameters of the pulmonary arteries and aorta in non-contrast Computed Tomography (CT) scans.METHODS: The proposed algorithm first extracts seed points in the right and left pulmonary arteries, the pulmonary trunk, and the ascending and descending aorta by using multi-atlas registration. Subsequently, the centerlines of the pulmonary arteries and aorta are extracted by a minimum cost path tracking between the extracted seed points, with a cost based on a combination of lumen intensity similarity and multiscale medialness in 3 planes. The centerlines are refined by applying the path tracking algorithm to curved multi-planar reformatted scans and are then smoothed and dilated non-uniformly according to the extracted local vessel radius from the medialness filter. The resulting coarse estimates of the vessels are used as initialization for a graph-cut segmentation. Once the vessels are segmented, the diameters of the pulmonary artery (PA) and the ascending aorta (AA) and the ratio are automatically calculated both in a single axial slice and in a 10 mm volume around the automatically extracted pulmonary artery bifurcation level. The method is evaluated on non-contrast CT scans from the Danish Lung Cancer Screening Trial (DLCST). Segmentation accuracy is determined by comparing with manual annotations on 25 CT scans. Intra-class correlation (ICC) between manual and automatic diameters, both measured in axial slices at the pulmonary artery bifurcation level, is computed on an additional 200 CT scans. Repeatability of the automated 3D volumetric diamete
- Published
- 2021
11. Mapping specific vulnerability of multiple confined and unconfined aquifers by using artificial intelligence to learn from multiple DRASTIC frameworks
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Sina Sadeghfam, Rahman Khatibi, Ata Allah Nadiri, and Zahra Sedghi
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Environmental Engineering ,Correlation coefficient ,Computer science ,0208 environmental biotechnology ,Vulnerability ,Aquifer ,02 engineering and technology ,Variation (game tree) ,010501 environmental sciences ,Management, Monitoring, Policy and Law ,01 natural sciences ,Anthropogenic pollution ,Artificial Intelligence ,Groundwater ,Waste Management and Disposal ,0105 earth and related environmental sciences ,geography ,Nitrates ,geography.geographical_feature_category ,business.industry ,General Medicine ,Models, Theoretical ,020801 environmental engineering ,Support vector machine ,Unsupervised learning ,Artificial intelligence ,Catastrophe theory ,business ,Environmental Monitoring - Abstract
An investigation is presented to improve on the performances of the Basic DRASTIC Framework (BDF) and its variation by the Fuzzy-Catastrophe Framework (FCF), both of which provide an estimate of intrinsic aquifer vulnerabilities to anthropogenic contamination. BDF prescribes rates and weights for 7 data layers but FCF is an unsupervised learning framework based on a multicriteria decision theory by integrating fuzzy membership function and catastrophe theory. The challenges in the paper include: (i) the study area comprises confined and unconfined aquifers and (ii) Artificial Intelligence (AI) is used to run Multiple Framework (AIMF) in order to map specific vulnerability due to a specific contaminant. Predicted results by AIMF are referred to as Specific Vulnerability Indices, as the learned VIs are referenced to site-specific nitrate-N. The results show that correlation coefficient between BDF or FCF with nitrate-N is lower than 0.7 but the AIMF strategy improves it to greater than 0.95. The results are evidence for the proof-of-concept for transforming frameworks to models capable of further learning.
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- 2018
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12. Qualitative risk aggregation problems for the safety of multiple aquifers exposed to nitrate, fluoride and arsenic contaminants by a ‘Total Information Management’ framework
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Ata Allah Nadiri, Rahman Khatibi, and Zahra Sedghi
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Pollution ,Information management ,geography ,geography.geographical_feature_category ,010504 meteorology & atmospheric sciences ,media_common.quotation_subject ,Pooling ,0207 environmental engineering ,Aquifer ,Sample (statistics) ,02 engineering and technology ,01 natural sciences ,chemistry.chemical_compound ,chemistry ,Conceptual model ,Environmental science ,020701 environmental engineering ,Baseline (configuration management) ,Water resource management ,Fluoride ,0105 earth and related environmental sciences ,Water Science and Technology ,media_common - Abstract
The aquifer at Varzeqan plain, with multiple confined/unconfined and hard-rock boundaries, is exposed to risks from several contaminants (nitrate-N, fluoride and arsenic) originated by anthropogenic and/or geogenic activities, which are possibly accelerating by anthropogenic activities. The study is a research initiative driven by impacts of poor or non-existent planning/ regulation practices to produce insights despite the sparsity of the available data and the unknown baseline. A methodology is given, which seeks ‘total information management’ by pooling together the following five dimensions: (i) a perceptual model to collect existing knowledge-base; (ii) a conceptual model to analyse a sample of ion-concentrations by a set of existing techniques (e.g. statistical, graphical and multivariate analysis); (iii) risk cells to contextualise each contaminant; (iv) “soft modelling” to firm up information by learning from convergences and/or divergences within the conceptual model; and (v) study the processes within each risk cell through the OSPRC framework (Origins, Sources, Pathways, Receptors and Consequence). The research caters for inherent variabilities in the study area by 15 risk cells delineated within the boundaries of confined, unconfined and hard-rock aquifers as follows: 4 risk cells account for minor ions of nitrate-N pollution of anthropogenic origins; 6 for minor ions of fluoride and 5 for trace ions of geogenic arsenic anomalies. It further identifies the possibility of anthropogenic activities encouraging geogenic anomalies. The findings are presented as a descriptive model but this will be transformed into quantitative models in due course when more data become available.
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- 2021
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13. Mapping vulnerability of multiple aquifers using multiple models and fuzzy logic to objectively derive model structures
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Rahman Khatibi, Ata Allah Nadiri, Maryam Gharekhani, and Zahra Sedghi
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Engineering ,Environmental Engineering ,0208 environmental biotechnology ,Aquifer ,02 engineering and technology ,010501 environmental sciences ,computer.software_genre ,01 natural sciences ,Fuzzy logic ,Multiple Models ,Environmental Chemistry ,Waste Management and Disposal ,0105 earth and related environmental sciences ,Vulnerability (computing) ,Hydrology ,geography ,geography.geographical_feature_category ,Artificial neural network ,business.industry ,Pollution ,Anthroposphere ,020801 environmental engineering ,Weighting ,Data mining ,business ,computer - Abstract
Driven by contamination risks, mapping Vulnerability Indices (VI) of multiple aquifers (both unconfined and confined) is investigated by integrating the basic DRASTIC framework with multiple models overarched by Artificial Neural Networks (ANN). The DRASTIC framework is a proactive tool to assess VI values using the data from the hydrosphere, lithosphere and anthroposphere. However, a research case arises for the application of multiple models on the ground of poor determination coefficients between the VI values and non-point anthropogenic contaminants. The paper formulates SCFL models, which are derived from the multiple model philosophy of Supervised Committee (SC) machines and Fuzzy Logic (FL) and hence SCFL as their integration. The Fuzzy Logic-based (FL) models include: Sugeno Fuzzy Logic (SFL), Mamdani Fuzzy Logic (MFL), Larsen Fuzzy Logic (LFL) models. The basic DRASTIC framework uses prescribed rating and weighting values based on expert judgment but the four FL-based models (SFL, MFL, LFL and SCFL) derive their values as per internal strategy within these models. The paper reports that FL and multiple models improve considerably on the correlation between the modeled vulnerability indices and observed nitrate-N values and as such it provides evidence that the SCFL multiple models can be an alternative to the basic framework even for multiple aquifers. The study area with multiple aquifers is in Varzeqan plain, East Azerbaijan, northwest Iran.
- Published
- 2016
14. Aorta and Pulmonary Artery Segmentation Using Optimal Surface Graph Cuts in Non-contrast CT.
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Gamechi, Zahra Sedghi, Arias-Lorza, Andres M., Pedersen, Jesper Holst, and de Bruijne, Marleen
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- 2018
- Full Text
- View/download PDF
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