39 results on '"Zerti D"'
Search Results
2. CRX Expression in Pluripotent Stem Cell‐Derived Photoreceptors Marks a Transplantable Subpopulation of Early Cones
- Author
-
Collin, J., Zerti, D., Queen, R., Santos-Ferreira, T., Bauer, R., Coxhead, J., Hussain, R., Steel, D., Mellough, C., Ader, M., Sernagor, E., Armstrong, L., and Lako, M.
- Subjects
Photoreceptors ,Pluripotent Stem Cells ,genetic structures ,CRX ,Induced Pluripotent Stem Cells ,Retinal Degeneration ,Single cell RNA‐seq ,Cell Differentiation ,Pde6brd1 mice ,Pluripotent stem cells ,Single cell RNA-seq ,Subretinal transplantation ,Animals ,Cell Lineage ,Humans ,Mice ,Organoids ,Retina ,Retinal Cone Photoreceptor Cells ,Retinal Rod Photoreceptor Cells ,Transcriptome ,eye diseases ,Embryonic Stem Cells/Induced Pluripotent Stem Cells ,sense organs - Abstract
Death of photoreceptors is a common cause of age‐related and inherited retinal dystrophies, and thus their replenishment from renewable stem cell sources is a highly desirable therapeutic goal. Human pluripotent stem cells provide a useful cell source in view of their limitless self‐renewal capacity and potential to not only differentiate into cells of the retina but also self‐organize into tissue with structure akin to the human retina as part of three‐dimensional retinal organoids. Photoreceptor precursors have been isolated from differentiating human pluripotent stem cells through application of cell surface markers or fluorescent reporter approaches and shown to have a similar transcriptome to fetal photoreceptors. In this study, we investigated the transcriptional profile of CRX‐expressing photoreceptor precursors derived from human pluripotent stem cells and their engraftment capacity in an animal model of retinitis pigmentosa (Pde6brd1), which is characterized by rapid photoreceptor degeneration. Single cell RNA‐Seq analysis revealed the presence of a dominant cell cluster comprising 72% of the cells, which displayed the hallmarks of early cone photoreceptor expression. When transplanted subretinally into the Pde6brd1 mice, the CRX+ cells settled next to the inner nuclear layer and made connections with the inner neurons of the host retina, and approximately one‐third of them expressed the pan cone marker, Arrestin 3, indicating further maturation upon integration into the host retina. Together, our data provide valuable molecular insights into the transcriptional profile of human pluripotent stem cells‐derived CRX+ photoreceptor precursors and indicate their usefulness as a source of transplantable cone photoreceptors. Stem Cells 2019;37:609–622
- Published
- 2019
3. SARS-CoV-2 Entry Factors are Highly Expressed in Nasal Epithelial Cells Together with Innate Immune Genes
- Author
-
Sungnak, W., Huang, N., Becavin, C., Berg, M., Queen, R., Litvinukova, M., Talavera-Lopez, C., Maatz, H., Reichart, D., Sampaziotis, F., Worlock, K. B., Yoshida, M., Barnes, J. L., Banovich, N. E., Barbry, P., Brazma, A., Collin, J., Desai, T. J., Duong, T. E., Eickelberg, O., Falk, C., Farzan, M., Glass, I., Gupta, R. K., Haniffa, M., Horvath, P., Hubner, N., Hung, D., Kaminski, N., Krasnow, M., Kropski, J. A., Kuhnemund, M., Lako, M., Lee, H., Leroy, S., Linnarson, S., Lundeberg, J., Meyer, K. B., Miao, Z., Misharin, A. V., Nawijn, M. C., Nikolic, M. Z., Noseda, M., Ordovas-Montanes, J., Oudit, G. Y., Pe'Er, D., Powell, J., Quake, S., Rajagopal, J., Tata, P. R., Rawlins, E. L., Regev, A., Reyfman, P. A., Rozenblatt-Rosen, O., Saeb-Parsy, K., Samakovlis, C., Schiller, H. B., Schultze, J. L., Seibold, M. A., Seidman, C. E., Seidman, J. G., Shalek, A. K., Shepherd, D., Spence, J., Spira, A., Sun, X., Teichmann, S. A., Theis, F. J., Tsankov, A. M., Vallier, L., van den Berge, M., Whitsett, J., Xavier, R., Xu, Y., Zaragosi, L. -E., Zerti, D., Zhang, H., Zhang, K., Rojas, M., Figueiredo, F., Sungnak, Waradon [0000-0002-0136-4960], Bécavin, Christophe [0000-0003-1555-3153], Sampaziotis, Fotios [0000-0003-0812-7586], Yoshida, Masahiro [0000-0002-3521-5322], Apollo - University of Cambridge Repository, Centre National de la Recherche Scientifique (CNRS), Université Côte d'Azur (UCA), Institut de pharmacologie moléculaire et cellulaire (IPMC), Centre National de la Recherche Scientifique (CNRS)-Université Nice Sophia Antipolis (... - 2019) (UNS), COMUE Université Côte d'Azur (2015-2019) (COMUE UCA)-COMUE Université Côte d'Azur (2015-2019) (COMUE UCA)-Université Côte d'Azur (UCA), Groningen Research Institute for Asthma and COPD (GRIAC), and Institute for Molecular Medicine Finland
- Subjects
PNEUMONIA ,0301 basic medicine ,TRANSMISSION ,viruses ,[SDV]Life Sciences [q-bio] ,Priming (immunology) ,PROTEIN ,CORONAVIRUS ,Biology ,medicine.disease_cause ,TMPRSS2 ,CHINA ,General Biochemistry, Genetics and Molecular Biology ,Article ,03 medical and health sciences ,0302 clinical medicine ,Immune system ,HCA Lung Biological Network ,FUNCTIONAL RECEPTOR ,Viral entry ,medicine ,Receptor ,Gene ,ComputingMilieux_MISCELLANEOUS ,Coronavirus ,General Medicine ,3. Good health ,WUHAN ,030104 developmental biology ,030220 oncology & carcinogenesis ,Immunology ,Tissue tropism ,3111 Biomedicine - Abstract
The SARS-CoV-2 coronavirus, the etiologic agent responsible for COVID-19 coronavirus disease, is a global threat. To better understand viral tropism, we assessed the RNA expression of the coronavirus receptor, ACE2, as well as the viral S protein priming protease TMPRSS2 thought to govern viral entry in single-cell RNA-sequencing (scRNA-seq) datasets from healthy individuals generated by the Human Cell Atlas consortium. We found that ACE2, as well as the protease TMPRSS2, are differentially expressed in respiratory and gut epithelial cells. In-depth analysis of epithelial cells in the respiratory tree reveals that nasal epithelial cells, specifically goblet/secretory cells and ciliated cells, display the highest ACE2 expression of all the epithelial cells analyzed. The skewed expression of viral receptors/entry-associated proteins towards the upper airway may be correlated with enhanced transmissivity. Finally, we showed that many of the top genes associated with ACE2 airway epithelial expression are innate immune-associated, antiviral genes, highly enriched in the nasal epithelial cells. This association with immune pathways might have clinical implications for the course of infection and viral pathology, and highlights the specific significance of nasal epithelia in viral infection. Our findings underscore the importance of the availability of the Human Cell Atlas as a reference dataset. In this instance, analysis of the compendium of data points to a particularly relevant role for nasal goblet and ciliated cells as early viral targets and potential reservoirs of SARS-CoV-2 infection. This, in turn, serves as a biological framework for dissecting viral transmission and developing clinical strategies for prevention and therapy.
- Published
- 2020
- Full Text
- View/download PDF
4. Developing a simple method to enhance the generation of cone and rod photoreceptors in pluripotent stem cell derived retinal organoids
- Author
-
Zerti, D., Dorgau, B., Felemban, M., Ghareeb, A. E., Yu, M., Yuchun, D., Krasnogor, N., and Lako, M.
- Published
- 2020
5. Unravelling the heterogeneity of progenitor cells in the developing human retina through single cell analyses
- Author
-
Collin, J, Zerti, D, Queen, R, Dorgau, B, and Lako, M
- Published
- 2020
6. Understanding the molecular and cellular complexity of adult human cornea through single cell RNA-Seq analysis
- Author
-
Zerti, D, Collin, J, Queen, R, Rooney, P, Connon, C, Armstrong, L, Figueiredo, F, and Lako, M
- Published
- 2020
7. Defining the optimal stage for transplantation of pluripotent stem cell derivedphotoreceptorprecursors
- Author
-
Zerti, D., Collin, J., Steel, D., Mellough, C. B., Sernagor, E., Armstrong, L., and Lako, M.
- Published
- 2019
8. Decellularised extracellular matrix-derived from neural retinal and retinal pigment epithelium enhance the expression of synaptic markers and light responsiveness of human pluripotent stem cell derived retinal organoids
- Author
-
Dorgau, B, Felemban, M, Hilgen, G, Kiening, M, Zerti, D, Hunt, Nc, Doherty, M, Whitfield, P, Hallam, D, White, K, Ding, Y, Krasnogor, N, Al-Aama, J, Asfour, Hz, Sernagor, E, and Lako, M
- Published
- 2019
9. Deconstructing Retinal Organoids: Single Cell RNA-Seq Reveals the Cellular Components of Human Pluripotent Stem Cell-Derived Retina
- Author
-
Collin, J., Queen, R., Zerti, D., Dorgau, B., Hussain, R., Coxhead, J., Cockell, S., and Lako, M.
- Subjects
Pluripotent Stem Cells ,Retinal Ganglion Cells ,Ependymoglial Cells ,Human Embryonic Stem Cells ,Single cell RNA‐Seq ,Retinal organoids ,Cell Differentiation ,Retinal Pigment Epithelium ,Pluripotent stem cells ,Single cell RNA-Seq ,Extracellular Matrix ,Humans ,Organoids ,RNA-Seq ,Retina ,Retinal Cone Photoreceptor Cells ,Retinal Rod Photoreceptor Cells ,Single-Cell Analysis ,Embryonic Stem Cells/Induced Pluripotent Stem Cells ,sense organs - Abstract
The rapid improvements in single cell sequencing technologies and analyses afford greater scope for dissecting organoid cultures composed of multiple cell types and create an opportunity to interrogate these models to understand tissue biology, cellular behavior and interactions. To this end, retinal organoids generated from human embryonic stem cells (hESCs) were analyzed by single cell RNA‐sequencing (scRNA‐Seq) at three time points of differentiation. Combinatorial data from all time points revealed the presence of nine clusters, five of which corresponded to key retinal cell types: retinal pigment epithelium (RPE), retinal ganglion cells (RGCs), cone and rod photoreceptors, and Müller glia. The remaining four clusters expressed genes typical of mitotic cells, extracellular matrix components and those involved in homeostasis. The cell clustering analysis revealed the decreasing presence of mitotic cells and RGCs, formation of a distinct RPE cluster, the emergence of cone and rod photoreceptors from photoreceptor precursors, and an increasing number of Müller glia cells over time. Pseudo‐time analysis resembled the order of cell birth during retinal development, with the mitotic cluster commencing the trajectory and the large majority of Müller glia completing the time line. Together, these data demonstrate the feasibility and potential of scRNA‐Seq to dissect the inherent complexity of retinal organoids and the orderly birth of key retinal cell types. Stem Cells 2019;37:593–598
- Published
- 2018
10. Extracellular matrix expression in human pluripotent stem cell derived retinal organoids recapitulates retinogenesis in vivo and reveals an important role for IMPG1 and CD44 in the development of photoreceptors and interphotoreceptor matrix
- Author
-
Felemban, M, Dorgau, B, Hunt, Nc, Hallam, D, Zerti, D, Bauer, R, Ding, Y, Collin, J, Steel, D, Krasnogor, N, Al-Aama, J, Lindsay, S, Mellough, C, and Lako, M.
- Published
- 2018
11. Deconstructing Retinal Organoids: To assess the heterogeneity, maturity and transplantationpotential of hESC-derivedphotoreceptors
- Author
-
Collin, J., Zerti, D., Queen, R., Santos-Ferreira, T., Coxhead, J., Hussain, R., Steel, D., Mellough, C., Ader, M., Sernagor, E., Armstrong, L., and Lako, M.
- Published
- 2018
12. Defining the optimal stage for transplantation of pluripotent stem cell derived photoreceptor precursors
- Author
-
Zerti, D, Collin, J, Steel, D, Mellough, Cb, Sernagor, E, Armstrong, L, and Lako, M
- Published
- 2018
13. Type-1 and type-2 cannabinoid receptor signalling is involved in the neuroprotectiv eeffect of Saffron of rat retina
- Author
-
Rapino, C., Maccarone, R., Zerti, D., Di Tommaso, M., Battista, N., Di Marco, S., Bisti, S., and Maccarrone, M.
- Published
- 2016
14. Targeting retinal degeneration in ABCr(-/-) mice with dietary saffron
- Author
-
Di Marco, S, Zerti, D, Maccarone, R, Falsini, B, and Bisti, S
- Published
- 2016
15. Comparing neuroprotective actions in a rat model of retinal degeneration
- Author
-
Di Paolo, M. and Zerti, D.
- Published
- 2015
16. Neuroprotectants in degenerating retinas
- Author
-
Zerti, D. and Di Paolo, M.
- Published
- 2015
17. Neurodegeneration and neuroprotection in ABCR-\- mice: a model of Stargardt disease
- Author
-
Zerti, D, Maccarone, Rita, Falsini, B, and Bisti, Silvia
- Published
- 2014
18. EFFECTS OF SAFFRON ON HEPATOCARCINOGENESIS PROCESS: A STUDY ON A MOUSE MODEL
- Author
-
Tessitore, Alessandra, Gaggiano, A, Del Vecchio, F, Piccoli, Mt, Fischietti, M, Verzella, D, Vecchiotti, D, DI PAOLO, Mattia, Zerti, D, Maggi, M, Maccarone, Rita, Bisti, Silvia, Zazzeroni, F, and Alesse, Edoardo
- Published
- 2013
19. Unravelling genotype-phenotype correlations in Stargardt disease using patient-derived retinal organoids.
- Author
-
Watson A, Queen R, Ferrández-Peral L, Dorgau B, Collin J, Nelson A, Hussain R, Coxhead J, McCorkindale M, Atkinson R, Zerti D, Chichagova V, Conesa A, Armstrong L, Cremers FPM, and Lako M
- Subjects
- Humans, Genetic Association Studies, ATP-Binding Cassette Transporters genetics, ATP-Binding Cassette Transporters metabolism, Male, Female, Stargardt Disease genetics, Stargardt Disease pathology, Organoids metabolism, Organoids pathology, Retina metabolism, Retina pathology, Induced Pluripotent Stem Cells metabolism
- Abstract
Stargardt disease is an inherited retinopathy affecting approximately 1:8000 individuals. It is characterised by biallelic variants in ABCA4 which encodes a vital protein for the recycling of retinaldehydes in the retina. Despite its prevalence and impact, there are currently no treatments available for this condition. Furthermore, 35% of STGD1 cases remain genetically unsolved. To investigate the cellular and molecular characteristics associated with STGD1, we generated iPSCs from two monoallelic unresolved (PT1 & PT2), late-onset STGD1 cases with the heterozygous complex allele - c.[5461-10 T > C;5603 A > T]. Both patient iPSCs and those from a biallelic affected control (AC) carrying -c.4892 T > C and c.4539+2001G > A, were differentiated to retinal organoids, which developed all key retinal neurons and photoreceptors with outer segments positive for ABCA4 expression. We observed patient-specific disruption to lamination with OPN1MW/LW
+ cone photoreceptor retention in the retinal organoid centre during differentiation. Photoreceptor retention was more severe in the AC case affecting both cones and rods, suggesting a genotype/phenotype correlation. scRNA-Seq suggests retention may be due to the induction of stress-related pathways in photoreceptors. Whole genome sequencing successfully identified the missing alleles in both cases; PT1 reported c.-5603A > T in homozygous state and PT2 uncovered a rare hypomorph - c.-4685T > C. Furthermore, retinal organoids were able to recapitulate the retina-specific splicing defect in PT1 as shown by long-read RNA-seq data. Collectively, these results highlight the suitability of retinal organoids in STGD1 modelling. Their ability to display genotype-phenotype correlations enhances their utility as a platform for therapeutic development., Competing Interests: Competing interests: The authors declare no competing interests Ethics approval and consent to participate: All participants in this research study were identified and enlisted with informed consent by collaborators in the Marie-Skłodowska Curie Innovative Training Network – StarT (Grant no: 813490). All samples were collected in accordance with the tenets of the Declaration of Helsinki and written informed consent was obtained for all patients participating in the study., (© 2025. The Author(s).)- Published
- 2025
- Full Text
- View/download PDF
20. Conditioned media from dental pulp stem cells to counteract age-related macular degeneration.
- Author
-
Carozza G, Zerti D, Pulcini F, Lancia L, Delle Monache S, Mattei V, and Maccarone R
- Subjects
- Culture Media, Conditioned pharmacology, Rats, Animals, Cells, Cultured, Intravitreal Injections, Male, Rats, Wistar, Humans, Retinal Pigment Epithelium metabolism, Retinal Pigment Epithelium pathology, Retinal Pigment Epithelium drug effects, Dental Pulp cytology, Macular Degeneration prevention & control, Macular Degeneration metabolism, Macular Degeneration pathology, Stem Cells, Disease Models, Animal
- Abstract
Purpose: Age-related macular degeneration (AMD) is the leading cause of blindness in the elderly. To date, there are no effective therapies to counteract AMD towards the most severe stages characterised by a progressive loss of photoreceptors triggered by retinal pigmented epithelium dysfunction. Given their easy source and their high proliferative potential, Dental Pulp Stem Cells (DPSCs) are considered promising for regenerative medicine. The main advantage of DPSCs is related to their paracrine immunosuppressive and immunoregulatory abilities, including the capability to promote regeneration of damaged tissues. Recent studies demonstrated the therapeutic potential of DPSCs-conditioned media (CM) in neurodegenerative diseases. In addition, we have already shown a differential expression of some growth factors and cytokines in CM derived from DPSCs cultured in hypoxia and normoxia conditions., Aim: In this study we evaluated the capability of DPSCs-CM to counteract retinal degeneration in an animal model of AMD. DPSCs-CM were intravitreally injected the day before the exposure of albino rats to high intensity light (LD)., Results: We evaluated the retinal function, and we performed morphological and molecular analysis a week after the LD, in accordance with the well-established protocol of our light damage model. DPSCs-CM obtained from hypoxia (HYPO-CM) or normoxia (NORM-CM), were able to preserve the retinal function, to reduce the damaged area and to counteract the upregulation of key factors involved in retinal degeneration, like FGF-2. Furthermore, we demonstrated that neither conditioned media modified inflammatory activation, as shown by both microglia activation and GFAP upregulation, but in vitro studies demonstrated a significant effect of both CM to counteract oxidative stress, one of the main causes of AMD., Conclusion: Taken together, our study demonstrated that NORM-CM and HYPO-CM, albeit with a different chemical composition, could represent eligible candidates to counteract retinal degeneration in an animal model of AMD. Further studies are needed to obtain conditioned media with the best performance in term of retinal protection., (Copyright © 2024 Elsevier Ltd. All rights reserved.)
- Published
- 2025
- Full Text
- View/download PDF
21. Single-cell analyses reveal transient retinal progenitor cells in the ciliary margin of developing human retina.
- Author
-
Dorgau B, Collin J, Rozanska A, Zerti D, Unsworth A, Crosier M, Hussain R, Coxhead J, Dhanaseelan T, Patel A, Sowden JC, FitzPatrick DR, Queen R, and Lako M
- Subjects
- Humans, Organoids metabolism, Organoids cytology, Gene Expression Regulation, Developmental, Chromatin metabolism, Transcription Factors metabolism, Transcription Factors genetics, Pluripotent Stem Cells cytology, Pluripotent Stem Cells metabolism, RNA-Seq, Cell Lineage, Transcriptome, Single-Cell Analysis methods, Retina cytology, Retina metabolism, Cell Differentiation, Stem Cells cytology, Stem Cells metabolism
- Abstract
The emergence of retinal progenitor cells and differentiation to various retinal cell types represent fundamental processes during retinal development. Herein, we provide a comprehensive single cell characterisation of transcriptional and chromatin accessibility changes that underline retinal progenitor cell specification and differentiation over the course of human retinal development up to midgestation. Our lineage trajectory data demonstrate the presence of early retinal progenitors, which transit to late, and further to transient neurogenic progenitors, that give rise to all the retinal neurons. Combining single cell RNA-Seq with spatial transcriptomics of early eye samples, we demonstrate the transient presence of early retinal progenitors in the ciliary margin zone with decreasing occurrence from 8 post-conception week of human development. In retinal progenitor cells, we identified a significant enrichment for transcriptional enhanced associate domain transcription factor binding motifs, which when inhibited led to loss of cycling progenitors and retinal identity in pluripotent stem cell derived organoids., (© 2024. The Author(s).)
- Published
- 2024
- Full Text
- View/download PDF
22. An overview of retinal light damage models for preclinical studies on age-related macular degeneration: identifying molecular hallmarks and therapeutic targets.
- Author
-
Carozza G, Zerti D, Tisi A, Ciancaglini M, Maccarrone M, and Maccarone R
- Subjects
- Animals, Humans, Macular Degeneration drug therapy, Macular Degeneration pathology
- Abstract
Age-related macular degeneration (AMD) is a complex, multifactorial disease leading to progressive and irreversible retinal degeneration, whose pathogenesis has not been fully elucidated yet. Due to the complexity and to the multiple features of the disease, many efforts have been made to develop animal models which faithfully reproduce the overall AMD hallmarks or that are able to mimic the different AMD stages. In this context, light damage (LD) rodent models of AMD represent a suitable and reliable approach to mimic the different AMD forms (dry, wet and geographic atrophy) while maintaining the time-dependent progression of the disease. In this review, we comprehensively reported how the LD paradigms reproduce the main features of human AMD. We discuss the capability of these models to broaden the knowledge in AMD research, with a focus on the mechanisms and the molecular hallmarks underlying the pathogenesis of the disease. We also critically revise the remaining challenges and future directions for the use of LD models., (© 2023 the author(s), published by De Gruyter, Berlin/Boston.)
- Published
- 2023
- Full Text
- View/download PDF
23. Single-cell RNA sequencing reveals transcriptional changes of human choroidal and retinal pigment epithelium cells during fetal development, in healthy adult and intermediate age-related macular degeneration.
- Author
-
Collin J, Hasoon MSR, Zerti D, Hammadi S, Dorgau B, Clarke L, Steel D, Hussain R, Coxhead J, Lisgo S, Queen R, and Lako M
- Subjects
- Humans, Adult, Endothelial Cells metabolism, Choroid metabolism, Fetal Development, Sequence Analysis, RNA, Retinal Pigment Epithelium metabolism, Macular Degeneration genetics, Macular Degeneration metabolism
- Abstract
Age-related macular degeneration (AMD) is the most prevalent cause of blindness in the developed world. Vision loss in the advanced stages of the disease is caused by atrophy of retinal photoreceptors, overlying retinal pigment epithelium (RPE) and choroidal endothelial cells. The molecular events that underline the development of these cell types from in utero to adult as well as the progression to intermediate and advanced stages AMD are not yet fully understood. We performed single-cell RNA-sequencing (RNA-Seq) of human fetal and adult RPE-choroidal tissues, profiling in detail all the cell types and elucidating cell type-specific proliferation, differentiation and immunomodulation events that occur up to midgestation. Our data demonstrate that progression from the fetal to adult state is characterized by an increase in expression of genes involved in the oxidative stress response and detoxification from heavy metals, suggesting a better defence against oxidative stress in the adult RPE-choroid tissue. Single-cell comparative transcriptional analysis between a patient with intermediate AMD and an unaffected subject revealed a reduction in the number of RPE cells and melanocytes in the macular region of the AMD patient. Together these findings may suggest a macular loss of RPE cells and melanocytes in the AMD patients, but given the complex processing of tissues required for single-cell RNA-Seq that is prone to technical artefacts, these findings need to be validated by additional techniques in a larger number of AMD patients and controls., (© The Author(s) 2023. Published by Oxford University Press.)
- Published
- 2023
- Full Text
- View/download PDF
24. pRB-Depleted Pluripotent Stem Cell Retinal Organoids Recapitulate Cell State Transitions of Retinoblastoma Development and Suggest an Important Role for pRB in Retinal Cell Differentiation.
- Author
-
Rozanska A, Cerna-Chavez R, Queen R, Collin J, Zerti D, Dorgau B, Beh CS, Davey T, Coxhead J, Hussain R, Al-Aama J, Steel DH, Benvenisty N, Armstrong L, Parulekar M, and Lako M
- Subjects
- Cell Differentiation, Child, Humans, Organoids metabolism, Retina metabolism, Retinoblastoma Protein genetics, Pluripotent Stem Cells metabolism, Retinal Neoplasms genetics, Retinal Neoplasms metabolism, Retinal Neoplasms pathology, Retinoblastoma genetics, Retinoblastoma metabolism, Retinoblastoma pathology
- Abstract
Retinoblastoma (Rb) is a childhood cancer of the developing retina, accounting for up to 17% of all tumors in infancy. To gain insights into the transcriptional events of cell state transitions during Rb development, we established 2 disease models via retinal organoid differentiation of a pRB (retinoblastoma protein)-depleted human embryonic stem cell line (RB1-null hESCs) and a pRB patient-specific induced pluripotent (iPSC) line harboring a RB1 biallelic mutation (c.2082delC). Both models were characterized by pRB depletion and accumulation of retinal progenitor cells at the expense of amacrine, horizontal and retinal ganglion cells, which suggests an important role for pRB in differentiation of these cell lineages. Importantly, a significant increase in the fraction of proliferating cone precursors (RXRγ+Ki67+) was observed in both pRB-depleted organoid models, which were defined as Rb-like clusters by single-cell RNA-Seq analysis. The pRB-depleted retinal organoids displayed similar features to Rb tumors, including mitochondrial cristae aberrations and rosette-like structures, and were able to undergo cell growth in an anchorage-independent manner, indicative of cell transformation in vitro. In both models, the Rb cones expressed retinal ganglion and horizontal cell markers, a novel finding, which could help to better characterize these tumors with possible therapeutic implications. Application of Melphalan, Topotecan, and TW-37 led to a significant reduction in the fraction of Rb proliferating cone precursors, validating the suitability of these in vitro models for testing novel therapeutics for Rb., (© The Author(s) 2022. Published by Oxford University Press.)
- Published
- 2022
- Full Text
- View/download PDF
25. Characterization of SARS-CoV-2 Entry Factors' Expression in Corneal and Limbal Tissues of Adult Human Donors Aged from 58 to 85.
- Author
-
Tisi A, Zerti D, Genitti G, Vicentini MT, Baccante M, Flati V, and Maccarone R
- Subjects
- Aged, Aged, 80 and over, Angiotensin-Converting Enzyme 2 metabolism, Female, Gene Expression Regulation, Viral physiology, Humans, Male, Middle Aged, Serine Endopeptidases metabolism, Conjunctiva metabolism, Conjunctiva virology, Cornea metabolism, Cornea virology, SARS-CoV-2 metabolism, Virus Internalization
- Abstract
Purpose: Recent studies have shown the presence of SARS-CoV-2 entry factors on the ocular surface, identifying the eye as an additional entry route for the virus. Moreover, the coexpression of angiotensin-converting enzyme 2 (ACE2) with other SARS-CoV-2 entry factors [transmembrane protease serine 2 (TMPRSS2), transmembrane protease serine 4 (TMPRSS4), and dipeptidyl peptidase-4 (DPP4)] facilitates the virus infection. Methods: Here, we performed a study over 10 adult corneal and limbal tissues from human donors, both male and female between 58 and 85 years of age. Some of the main virus entry factors were analyzed and their expression was quantified and correlated with the age and sex of the donors through western blot. The receptors' localization was investigated through immunofluorescence. Results: Immunofluorescence confirmed the localization of ACE2 and TMPRSS2 on the ocular surface and showed, for the first time, the localization of TMPRSS4 and DPP4 in limbal and corneal epithelial superficial cells. The quantitative analysis showed that the expression of SARS-CoV-2 entry factors on corneal and limbal cells is likely to be modulated in an age-dependent manner, in agreement with the increased susceptibility to COVID-19 in the elderly. Moreover, we found a relationship between the expression of TMPRSS proteases with the activation state of limbal cells in 80-year-old donors. Conclusion: This study provides information on the expression of SARS-CoV-2 entry factors on the ocular surface of 10 adult human donors and is a first observation of a possible age-dependent modulation on corneal and limbal tissues. Our data pave the way to further investigate the susceptibility to the infection through the ocular surface in the elderly.
- Published
- 2022
- Full Text
- View/download PDF
26. A single cell atlas of human cornea that defines its development, limbal progenitor cells and their interactions with the immune cells.
- Author
-
Collin J, Queen R, Zerti D, Bojic S, Dorgau B, Moyse N, Molina MM, Yang C, Dey S, Reynolds G, Hussain R, Coxhead JM, Lisgo S, Henderson D, Joseph A, Rooney P, Ghosh S, Clarke L, Connon C, Haniffa M, Figueiredo F, Armstrong L, and Lako M
- Subjects
- Adult, Cell Differentiation, Cells, Cultured, Cornea, Epithelial Cells, Humans, Stem Cells, Epithelium, Corneal, Limbus Corneae
- Abstract
Purpose: Single cell (sc) analyses of key embryonic, fetal and adult stages were performed to generate a comprehensive single cell atlas of all the corneal and adjacent conjunctival cell types from development to adulthood., Methods: Four human adult and seventeen embryonic and fetal corneas from 10 to 21 post conception week (PCW) specimens were dissociated to single cells and subjected to scRNA- and/or ATAC-Seq using the 10x Genomics platform. These were embedded using Uniform Manifold Approximation and Projection (UMAP) and clustered using Seurat graph-based clustering. Cluster identification was performed based on marker gene expression, bioinformatic data mining and immunofluorescence (IF) analysis. RNA interference, IF, colony forming efficiency and clonal assays were performed on cultured limbal epithelial cells (LECs)., Results: scRNA-Seq analysis of 21,343 cells from four adult human corneas and adjacent conjunctivas revealed the presence of 21 cell clusters, representing the progenitor and differentiated cells in all layers of cornea and conjunctiva as well as immune cells, melanocytes, fibroblasts, and blood/lymphatic vessels. A small cell cluster with high expression of limbal progenitor cell (LPC) markers was identified and shown via pseudotime analysis to give rise to five other cell types representing all the subtypes of differentiated limbal and corneal epithelial cells. A novel putative LPCs surface marker, GPHA2, expressed on the surface of 0.41% ± 0.21 of the cultured LECs, was identified, based on predominant expression in the limbal crypts of adult and developing cornea and RNAi validation in cultured LECs. Combining scRNA- and ATAC-Seq analyses, we identified multiple upstream regulators for LPCs and demonstrated a close interaction between the immune cells and limbal progenitor cells. RNA-Seq analysis indicated the loss of GPHA2 expression and acquisition of proliferative limbal basal epithelial cell markers during ex vivo LEC expansion, independently of the culture method used. Extending the single cell analyses to keratoconus, we were able to reveal activation of collagenase in the corneal stroma and a reduced pool of limbal suprabasal cells as two key changes underlying the disease phenotype. Single cell RNA-Seq of 89,897 cells obtained from embryonic and fetal cornea indicated that during development, the conjunctival epithelium is the first to be specified from the ocular surface epithelium, followed by the corneal epithelium and the establishment of LPCs, which predate the formation of limbal niche by a few weeks., Conclusions: Our scRNA-and ATAC-Seq data of developing and adult cornea in steady state and disease conditions provide a unique resource for defining genes/pathways that can lead to improvement in ex vivo LPCs expansion, stem cell differentiation methods and better understanding and treatment of ocular surface disorders., (Copyright © 2021 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2021
- Full Text
- View/download PDF
27. Transplanted pluripotent stem cell-derived photoreceptor precursors elicit conventional and unusual light responses in mice with advanced retinal degeneration.
- Author
-
Zerti D, Hilgen G, Dorgau B, Collin J, Ader M, Armstrong L, Sernagor E, and Lako M
- Subjects
- Animals, Mice, Retinal Ganglion Cells pathology, Pluripotent Stem Cells transplantation, Retinal Cone Photoreceptor Cells, Retinal Degeneration therapy, Stem Cell Transplantation
- Abstract
Retinal dystrophies often lead to blindness. Developing therapeutic interventions to restore vision is therefore of paramount importance. Here we demonstrate the ability of pluripotent stem cell-derived cone precursors to engraft and restore light responses in the Pde6brd1 mouse, an end-stage photoreceptor degeneration model. Our data show that up to 1.5% of precursors integrate into the host retina, differentiate into cones, and engraft in close apposition to the host bipolar cells. Half of the transplanted mice exhibited visual behavior and of these 33% showed binocular light sensitivity. The majority of retinal ganglion cells exhibited contrast-sensitive ON, OFF or ON-OFF light responses and even motion sensitivity; however, quite a few exhibited unusual responses (eg, light-induced suppression), presumably reflecting remodeling of the neural retina. Our data indicate that despite relatively low engraftment yield, pluripotent stem cell-derived cone precursors can elicit light responsiveness even at advanced degeneration stages. Further work is needed to improve engraftment yield and counteract retinal remodeling to achieve useful clinical applications., (© 2021 The Authors. Stem Cells published by Wiley Periodicals LLC on behalf of AlphaMed Press.)
- Published
- 2021
- Full Text
- View/download PDF
28. Dissecting the Transcriptional and Chromatin Accessibility Heterogeneity of Proliferating Cone Precursors in Human Retinoblastoma Tumors by Single Cell Sequencing-Opening Pathways to New Therapeutic Strategies?
- Author
-
Collin J, Queen R, Zerti D, Steel DH, Bowen C, Parulekar M, and Lako M
- Subjects
- Cell Cycle physiology, Cells, Cultured, Child, Preschool, Chromatin Immunoprecipitation Sequencing, Humans, Infant, Male, Retina embryology, Retinal Neoplasms pathology, Retinoblastoma pathology, Retinoblastoma Binding Proteins genetics, Sequence Analysis, RNA, Signal Transduction, Single-Cell Analysis, Ubiquitin-Protein Ligases genetics, Cell Transformation, Neoplastic genetics, Chromatin genetics, Retinal Cone Photoreceptor Cells pathology, Retinal Neoplasms genetics, Retinoblastoma genetics, Stem Cells pathology, Transcriptional Activation genetics
- Abstract
Purpose: Retinoblastoma (Rb) is a malignant neoplasm arising during retinal development from mutations in the RB1 gene. Loss or inactivation of both copies of RB1 results in initiation of retinoblastoma tumors; however, additional genetic changes are needed for the continued growth and spread of the tumor. Ex vivo research has shown that in humans, retinoblastoma may initiate from RB1-depleted cone precursors. Notwithstanding, it has not been possible to assess the full spectrum of clonal types within the tumor itself in vivo and the molecular changes occurring at the cells of origin, enabling their malignant conversion. To overcome these challenges, we have performed the first single cell (sc) RNA- and ATAC-Seq analyses of primary tumor tissues, enabling us to dissect the transcriptional and chromatin accessibility heterogeneity of proliferating cone precursors in human Rb tumors., Methods: Two Rb tumors each characterized by two pathogenic RB1 mutations were dissociated to single cells and subjected to scRNA-Seq and scATAC-Seq using the 10× Genomics platform. In addition, nine human embryonic and fetal retina samples were dissociated to single cells and subjected to scRNA- and ATAC-Seq analyses. The scRNA- and ATAC-Seq data were embedded using Uniform Manifold Approximation and Projection and clustered with Seurat graph-based clustering. Integrated scATAC-Seq analysis of Rb tumors and human embryonic/fetal retina samples was performed to identify Rb cone enriched subclusters. Pseudo time analysis of proliferating cones in the Rb samples was performed with Monocle. Ingenuity Pathway Analysis was used to identify the signaling pathway and upstream regulators in the Rb cone-enriched subclusters., Results: Our single cell analyses revealed the predominant presence of cone precursors at different stages of the cell cycle in the Rb tumors and among those identified the G2/M subset as the cell type of origin. scATAC-Seq analysis identified two Rb enriched cone subclusters, each characterized by activation of different upstream regulators and signaling pathways, enabling proliferating cone precursors to escape cell cycle arrest and/or apoptosis., Conclusions: Our study provides evidence of Rb tumor heterogeneity and defines molecular pathways that can be targeted to define new treatment strategies.
- Published
- 2021
- Full Text
- View/download PDF
29. IGFBPs mediate IGF-1's functions in retinal lamination and photoreceptor development during pluripotent stem cell differentiation to retinal organoids.
- Author
-
Zerti D, Molina MM, Dorgau B, Mearns S, Bauer R, Al-Aama J, and Lako M
- Subjects
- Catechols pharmacology, Cell Differentiation drug effects, ELAV-Like Protein 3 genetics, ELAV-Like Protein 3 metabolism, ELAV-Like Protein 4 genetics, ELAV-Like Protein 4 metabolism, Gene Expression Regulation, Homeodomain Proteins genetics, Homeodomain Proteins metabolism, Humans, Insulin-Like Growth Factor Binding Proteins antagonists & inhibitors, Insulin-Like Growth Factor Binding Proteins metabolism, Insulin-Like Growth Factor I metabolism, Insulin-Like Growth Factor I pharmacology, Insulin-Like Growth Factor II metabolism, Isoquinolines pharmacology, Ki-67 Antigen genetics, Ki-67 Antigen metabolism, Neoplasm Proteins genetics, Neoplasm Proteins metabolism, Organoids cytology, Organoids drug effects, Photoreceptor Cells, Vertebrate cytology, Photoreceptor Cells, Vertebrate drug effects, Pluripotent Stem Cells cytology, Pluripotent Stem Cells drug effects, Recoverin genetics, Recoverin metabolism, Signal Transduction, Trans-Activators genetics, Trans-Activators metabolism, Transcription Factors genetics, Transcription Factors metabolism, gamma-Synuclein genetics, gamma-Synuclein metabolism, Insulin-Like Growth Factor Binding Proteins genetics, Insulin-Like Growth Factor I genetics, Insulin-Like Growth Factor II genetics, Organoids metabolism, Photoreceptor Cells, Vertebrate metabolism, Pluripotent Stem Cells metabolism
- Abstract
Development of the retina is regulated by growth factors, such as insulin-like growth factors 1 and 2 (IGF-1/2), which coordinate proliferation, differentiation, and maturation of the neuroepithelial precursors cells. In the circulation, IGF-1/2 are transported by the insulin growth factor binding proteins (IGFBPs) family members. IGFBPs can impact positively and negatively on IGF-1, by making it available or sequestering IGF-1 to or from its receptor. In this study, we investigated the expression of IGFBPs and their role in the generation of human retinal organoids from human pluripotent stem cells, showing a dynamic expression pattern suggestive of different IGFBPs being used in a stage-specific manner to mediate IGF-1 functions. Our data show that IGF-1 addition to culture media facilitated the generation of retinal organoids displaying the typical laminated structure and photoreceptor maturation. The organoids cultured in the absence of IGF-1, lacked the typical laminated structure at the early stages of differentiation and contained significantly less photoreceptors and more retinal ganglion cells at the later stages of differentiation, confirming the positive effects of IGF-1 on retinal lamination and photoreceptor development. The organoids cultured with the IGFBP inhibitor (NBI-31772) and IGF-1 showed lack of retinal lamination at the early stages of differentiation, an increased propensity to generate horizontal cells at mid-stages of differentiation and reduced photoreceptor development at the later stages of differentiation. Together these data suggest that IGFBPs enable IGF-1's role in retinal lamination and photoreceptor development in a stage-specific manner., (©2021 The Authors. Stem Cells published by Wiley Periodicals LLC on behalf of AlphaMed Press 2021.)
- Published
- 2021
- Full Text
- View/download PDF
30. Co-expression of SARS-CoV-2 entry genes in the superficial adult human conjunctival, limbal and corneal epithelium suggests an additional route of entry via the ocular surface.
- Author
-
Collin J, Queen R, Zerti D, Dorgau B, Georgiou M, Djidrovski I, Hussain R, Coxhead JM, Joseph A, Rooney P, Lisgo S, Figueiredo F, Armstrong L, and Lako M
- Subjects
- Aged, Aged, 80 and over, Conjunctiva virology, Epithelium, Corneal virology, Humans, Middle Aged, SARS-CoV-2, Angiotensin-Converting Enzyme 2 genetics, COVID-19, Conjunctiva metabolism, Epithelium, Corneal metabolism, Receptors, Virus genetics, Serine Endopeptidases genetics
- Abstract
Purpose: The high infection rate of SARS-CoV-2 necessitates the need for multiple studies identifying the molecular mechanisms that facilitate the viral entry and propagation. Currently the potential extra-respiratory transmission routes of SARS-CoV-2 remain unclear., Methods: Using single-cell RNA Seq and ATAC-Seq datasets and immunohistochemical analysis, we investigated SARS-CoV-2 tropism in the embryonic, fetal and adult human ocular surface., Results: The co-expression of ACE2 receptor and entry protease TMPRSS2 was detected in the human adult conjunctival, limbal and corneal epithelium, but not in the embryonic and fetal ocular surface up to 21 post conception weeks. These expression patterns were corroborated by the single cell ATAC-Seq data, which revealed a permissive chromatin in ACE2 and TMPRSS2 loci in the adult conjunctival, limbal and corneal epithelium. Co-expression of ACE2 and TMPRSS2 was strongly detected in the superficial limbal, corneal and conjunctival epithelium, implicating these as target entry cells for SARS-CoV-2 in the ocular surface. Strikingly, we also identified the key pro-inflammatory signals TNF, NFKβ and IFNG as upstream regulators of the transcriptional profile of ACE2
+ TMPRSS2+ cells in the superficial conjunctival epithelium, suggesting that SARS-CoV-2 may utilise inflammatory driven upregulation of ACE2 and TMPRSS2 expression to enhance infection in ocular surface., Conclusions: Together our data indicate that the human ocular surface epithelium provides an additional entry portal for SARS-CoV-2, which may exploit inflammatory driven upregulation of ACE2 and TMPRSS2 entry factors to enhance infection., (Copyright © 2020. Published by Elsevier Inc.)- Published
- 2021
- Full Text
- View/download PDF
31. Understanding the complexity of retina and pluripotent stem cell derived retinal organoids with single cell RNA sequencing: current progress, remaining challenges and future prospective.
- Author
-
Zerti D, Collin J, Queen R, Cockell SJ, and Lako M
- Subjects
- Humans, Organoids cytology, Pluripotent Stem Cells cytology, Retina cytology, Sequence Analysis, RNA methods, Transcriptome genetics
- Abstract
Single-cell sequencing technologies have emerged as a revolutionary tool with transformative new methods to profile genetic, epigenetic, spatial, and lineage information in individual cells. Single-cell RNA sequencing (scRNA-Seq) allows researchers to collect large datasets detailing the transcriptomes of individual cells in space and time and is increasingly being applied to reveal cellular heterogeneity in retinal development, normal physiology, and disease, and provide new insights into cell-type specific markers and signaling pathways. In recent years, scRNA-Seq datasets have been generated from retinal tissue and pluripotent stem cell-derived retinal organoids. Their cross-comparison enables staging of retinal organoids, identification of specific cells in developing and adult human neural retina and provides deeper insights into cell-type sub-specification and geographical differences. In this article, we review the recent rapid progress in scRNA-Seq analyses of retina and retinal organoids, the questions that remain unanswered and the technical challenges that need to be overcome to achieve consistent results that reflect the complexity, functionality, and interactions of all retinal cell types.
- Published
- 2020
- Full Text
- View/download PDF
32. Developing a simple method to enhance the generation of cone and rod photoreceptors in pluripotent stem cell-derived retinal organoids.
- Author
-
Zerti D, Dorgau B, Felemban M, Ghareeb AE, Yu M, Ding Y, Krasnogor N, and Lako M
- Subjects
- Cell Differentiation, Humans, Organoids cytology, Photoreceptor Cells, Vertebrate cytology, Retina cytology, Retinal Cone Photoreceptor Cells cytology, Retinal Rod Photoreceptor Cells cytology, Organoids metabolism, Photoreceptor Cells, Vertebrate metabolism, Pluripotent Stem Cells metabolism, Retina metabolism, Retinal Cone Photoreceptor Cells metabolism, Retinal Rod Photoreceptor Cells metabolism
- Abstract
Cell replacement therapy is a promising treatment for irreversible retinal cell death in diverse diseases such as Stargardt's disease, age-related macular degeneration, and retinitis pigmentosa. The final impact of all retinal dystrophies is the loss of photoreceptors; hence, there is a pressing need for research into replacement. Seminal work has shown that a simple three-dimensional culture system enables differentiation of human pluripotent stem cells to retinal organoids containing large numbers of photoreceptors developing alongside retinal neurons and Müller glia cells in a laminated structure that resembles the native retina. Despite these promising developments, current protocols show different efficiencies across pluripotent stem cells and result in retinal organoids with a mixture of photoreceptor cells at varying maturation states, along with nonphotoreceptor cell types. In this study, we investigated the impact of stage-specific addition of retinoic acid (RA), 9-cis-retinal, 11-cis-retinal, levodopa (l-DOPA), triiodothyronine (T3), and γ-secretase inhibitor ((2S)-N-[(3,5-Difluorophenyl)acetyl]-l-alanyl-2-phenyl]glycine1,1-dimethylethyl ester2L [DAPT]) in the generation of cone and rod photoreceptors. Our results indicate that addition of RA + T3 during days 90 to 120 of differentiation enhanced the generation of rod and S-cone photoreceptor formation, while the combined addition of DAPT from days 28 to 42 with RA during days 30 to 120 of differentiation led to enhanced generation of L/M-cones at the expense of rods. l-DOPA when added together with RA during days 90 to 120 of differentiation also promoted the emergence of S-cones at the expense of rod photoreceptors. Collectively, these data represent an advance in our ability to direct generation of rod and cone photoreceptors in vitro., (©2019 The Authors. Stem Cells published by Wiley Periodicals, Inc. on behalf of AlphaMed Press 2019.)
- Published
- 2020
- Full Text
- View/download PDF
33. Systematic Comparison of Retinal Organoid Differentiation from Human Pluripotent Stem Cells Reveals Stage Specific, Cell Line, and Methodological Differences.
- Author
-
Mellough CB, Collin J, Queen R, Hilgen G, Dorgau B, Zerti D, Felemban M, White K, Sernagor E, and Lako M
- Subjects
- Adult, Cell Line, Female, Human Embryonic Stem Cells cytology, Humans, Induced Pluripotent Stem Cells cytology, Organoids cytology, Retina cytology, Cell Culture Techniques, Cell Differentiation, Embryoid Bodies metabolism, Human Embryonic Stem Cells metabolism, Induced Pluripotent Stem Cells metabolism, Organoids metabolism, Retina metabolism
- Abstract
A major goal in the stem cell field is to generate tissues that can be utilized as a universal tool for in vitro models of development and disease, drug development, or as a resource for patients suffering from disease or injury. Great efforts are being made to differentiate human pluripotent stem cells in vitro toward retinal tissue, which is akin to native human retina in its cytoarchitecture and function, yet the numerous existing retinal induction protocols remain variable in their efficiency and do not routinely produce morphologically or functionally mature photoreceptors. Herein, we determine the impact that the method of embryoid body (EB) formation and maintenance as well as cell line background has on retinal organoid differentiation from human embryonic stem cells and human induced pluripotent stem cells. Our data indicate that cell line-specific differences dominate the variables that underline the differentiation efficiency in the early stages of differentiation. In contrast, the EB generation method and maintenance conditions determine the later differentiation and maturation of retinal organoids. Of the latter, the mechanical method of EB generation under static conditions, accompanied by media supplementation with Y27632 for the first 48 hours of differentiation, results in the most consistent formation of laminated retinal neuroepithelium containing mature and electrophysiologically responsive photoreceptors. Collectively, our data provide substantive evidence for stage-specific differences in the ability to give rise to laminated retinae, which is determined by cell line-specific differences in the early stages of differentiation and EB generation/organoid maintenance methods at later stages., (© 2019 The Authors. STEM CELLS TRANSLATIONAL MEDICINE published by Wiley Periodicals, Inc. on behalf of AlphaMed Press.)
- Published
- 2019
- Full Text
- View/download PDF
34. Deconstructing Retinal Organoids: Single Cell RNA-Seq Reveals the Cellular Components of Human Pluripotent Stem Cell-Derived Retina.
- Author
-
Collin J, Queen R, Zerti D, Dorgau B, Hussain R, Coxhead J, Cockell S, and Lako M
- Subjects
- Ependymoglial Cells cytology, Ependymoglial Cells metabolism, Extracellular Matrix genetics, Extracellular Matrix metabolism, Human Embryonic Stem Cells cytology, Humans, RNA-Seq methods, Retina cytology, Retinal Cone Photoreceptor Cells cytology, Retinal Cone Photoreceptor Cells metabolism, Retinal Ganglion Cells cytology, Retinal Ganglion Cells metabolism, Retinal Pigment Epithelium growth & development, Retinal Pigment Epithelium metabolism, Retinal Rod Photoreceptor Cells cytology, Retinal Rod Photoreceptor Cells metabolism, Single-Cell Analysis methods, Cell Differentiation genetics, Organoids cytology, Pluripotent Stem Cells cytology, Retina growth & development
- Abstract
The rapid improvements in single cell sequencing technologies and analyses afford greater scope for dissecting organoid cultures composed of multiple cell types and create an opportunity to interrogate these models to understand tissue biology, cellular behavior and interactions. To this end, retinal organoids generated from human embryonic stem cells (hESCs) were analyzed by single cell RNA-sequencing (scRNA-Seq) at three time points of differentiation. Combinatorial data from all time points revealed the presence of nine clusters, five of which corresponded to key retinal cell types: retinal pigment epithelium (RPE), retinal ganglion cells (RGCs), cone and rod photoreceptors, and Müller glia. The remaining four clusters expressed genes typical of mitotic cells, extracellular matrix components and those involved in homeostasis. The cell clustering analysis revealed the decreasing presence of mitotic cells and RGCs, formation of a distinct RPE cluster, the emergence of cone and rod photoreceptors from photoreceptor precursors, and an increasing number of Müller glia cells over time. Pseudo-time analysis resembled the order of cell birth during retinal development, with the mitotic cluster commencing the trajectory and the large majority of Müller glia completing the time line. Together, these data demonstrate the feasibility and potential of scRNA-Seq to dissect the inherent complexity of retinal organoids and the orderly birth of key retinal cell types. Stem Cells 2019;37:593-598., (© 2018 The Authors. Stem Cells published by Wiley Periodicals, Inc. on behalf of AlphaMed Press 2018.)
- Published
- 2019
- Full Text
- View/download PDF
35. Decellularised extracellular matrix-derived peptides from neural retina and retinal pigment epithelium enhance the expression of synaptic markers and light responsiveness of human pluripotent stem cell derived retinal organoids.
- Author
-
Dorgau B, Felemban M, Hilgen G, Kiening M, Zerti D, Hunt NC, Doherty M, Whitfield P, Hallam D, White K, Ding Y, Krasnogor N, Al-Aama J, Asfour HZ, Sernagor E, and Lako M
- Subjects
- Adult, Animals, Cattle, Cell Differentiation drug effects, Culture Media, Conditioned pharmacology, Extracellular Matrix drug effects, Extracellular Matrix radiation effects, Human Embryonic Stem Cells cytology, Human Embryonic Stem Cells drug effects, Human Embryonic Stem Cells radiation effects, Human Embryonic Stem Cells ultrastructure, Humans, Organoids drug effects, Organoids radiation effects, Organoids ultrastructure, Photoreceptor Cells, Vertebrate cytology, Photoreceptor Cells, Vertebrate drug effects, Photoreceptor Cells, Vertebrate radiation effects, Photoreceptor Cells, Vertebrate ultrastructure, Pluripotent Stem Cells drug effects, Pluripotent Stem Cells radiation effects, Synapses drug effects, Synapses radiation effects, Biomarkers metabolism, Extracellular Matrix chemistry, Light, Organoids cytology, Peptides pharmacology, Pluripotent Stem Cells cytology, Retinal Pigment Epithelium metabolism, Synapses metabolism
- Abstract
Tissue specific extracellular matrices (ECM) provide structural support and enable access to molecular signals and metabolites, which are essential for directing stem cell renewal and differentiation. To mimic this phenomenon in vitro, tissue decellularisation approaches have been developed, resulting in the generation of natural ECM scaffolds that have comparable physical and biochemical properties of the natural tissues and are currently gaining traction in tissue engineering and regenerative therapies due to the ease of standardised production, and constant availability. In this manuscript we report the successful generation of decellularised ECM-derived peptides from neural retina (decel NR) and retinal pigment epithelium (decel RPE), and their impact on differentiation of human pluripotent stem cells (hPSCs) to retinal organoids. We show that culture media supplementation with decel RPE and RPE-conditioned media (CM RPE) significantly increases the generation of rod photoreceptors, whilst addition of decel NR and decel RPE significantly enhances ribbon synapse marker expression and the light responsiveness of retinal organoids. Photoreceptor maturation, formation of correct synapses between retinal cells and recording of robust light responses from hPSC-derived retinal organoids remain unresolved challenges for the field of regenerative medicine. Enhanced rod photoreceptor differentiation, synaptogenesis and light response in response to addition of decellularised matrices from RPE and neural retina as shown herein provide a novel and substantial advance in generation of retinal organoids for drug screening, tissue engineering and regenerative medicine., (Crown Copyright © 2019. Published by Elsevier Ltd. All rights reserved.)
- Published
- 2019
- Full Text
- View/download PDF
36. An integrated transcriptional analysis of the developing human retina.
- Author
-
Mellough CB, Bauer R, Collin J, Dorgau B, Zerti D, Dolan DWP, Jones CM, Izuogu OG, Yu M, Hallam D, Steyn JS, White K, Steel DH, Santibanez-Koref M, Elliott DJ, Jackson MS, Lindsay S, Grellscheid S, and Lako M
- Subjects
- Alternative Splicing genetics, Animals, Biomarkers metabolism, Cilia metabolism, Fetus metabolism, Gene Expression Regulation, Developmental, Organogenesis genetics, Photoreceptor Cells, Vertebrate cytology, Photoreceptor Cells, Vertebrate metabolism, Principal Component Analysis, RNA genetics, RNA metabolism, RNA Precursors genetics, RNA Precursors metabolism, RNA, Circular, Retina cytology, Retina ultrastructure, Transcriptome genetics, Gene Expression Profiling, Retina embryology, Retina metabolism
- Abstract
The scarcity of embryonic/foetal material as a resource for direct study means that there is still limited understanding of human retina development. Here, we present an integrated transcriptome analysis combined with immunohistochemistry in human eye and retinal samples from 4 to 19 post-conception weeks. This analysis reveals three developmental windows with specific gene expression patterns that informed the sequential emergence of retinal cell types and enabled identification of stage-specific cellular and biological processes, and transcriptional regulators. Each stage is characterised by a specific set of alternatively spliced transcripts that code for proteins involved in the formation of the photoreceptor connecting cilium, pre-mRNA splicing and epigenetic modifiers. Importantly, our data show that the transition from foetal to adult retina is characterised by a large increase in the percentage of mutually exclusive exons that code for proteins involved in photoreceptor maintenance. The circular RNA population is also defined and shown to increase during retinal development. Collectively, these data increase our understanding of human retinal development and the pre-mRNA splicing process, and help to identify new candidate disease genes., Competing Interests: Competing interestsThe authors declare no competing or financial interests., (© 2019. Published by The Company of Biologists Ltd.)
- Published
- 2019
- Full Text
- View/download PDF
37. Extracellular matrix component expression in human pluripotent stem cell-derived retinal organoids recapitulates retinogenesis in vivo and reveals an important role for IMPG1 and CD44 in the development of photoreceptors and interphotoreceptor matrix.
- Author
-
Felemban M, Dorgau B, Hunt NC, Hallam D, Zerti D, Bauer R, Ding Y, Collin J, Steel D, Krasnogor N, Al-Aama J, Lindsay S, Mellough C, and Lako M
- Subjects
- Animals, Humans, Macaca, Mice, Organoids cytology, Photoreceptor Cells, Vertebrate cytology, Pluripotent Stem Cells cytology, Extracellular Matrix classification, Extracellular Matrix Proteins metabolism, Eye Proteins metabolism, Hyaluronan Receptors metabolism, Organoids metabolism, Photoreceptor Cells, Vertebrate metabolism, Pluripotent Stem Cells metabolism, Proteoglycans metabolism
- Abstract
The extracellular matrix (ECM) plays an important role in numerous processes including cellular proliferation, differentiation, migration, maturation, adhesion guidance and axonal growth. To date, there has been no detailed analysis of the ECM distribution during retinal ontogenesis in humans and the functional importance of many ECM components is poorly understood. In this study, the expression of key ECM components in adult mouse and monkey retina, developing and adult human retina and retinal organoids derived from human pluripotent stem cells was studied. Our data indicate that basement membrane ECMs (Fibronectin and Collagen IV) were expressed in Bruch's membrane and the inner limiting membrane of the developing human retina, whilst the hyalectins (Versican and Brevican), cluster of differentiation 44 (CD44), photoreceptor-specific ECMs Interphotoreceptor Matrix Proteoglycan 1 (IMPG1) and Interphotoreceptor Matrix Proteoglycan 2 (IMPG2) were detected in the developing interphotoreceptor matrix (IPM). The expression of IMPG1, Versican and Brevican in the developing IPM was conserved between human developing retina and human pluripotent stem cell-derived retinal organoids. Blocking the action of CD44 and IMPG1 in pluripotent stem cell derived retinal organoids affected the development of photoreceptors, their inner/outer segments and connecting cilia and disrupted IPM formation, with IMPG1 having an earlier and more significant impact. Together, our data suggest an important role for IMPG1 and CD44 in the development of photoreceptors and IPM formation during human retinogenesis., Statement of Significance: The expression and the role of many extracellular matrix (ECM) components during human retinal development is not fully understood. In this study, expression of key ECM components (Collagen IV, Fibronectin, Brevican, Versican, IMPG1 and IMPG2) was investigated during human retinal ontogenesis. Collagen IV and Fibronectin were expressed in Bruch's membrane; whereas Brevican, Versican, IMPG1 & IMPG2 in the developing interphotoreceptor matrix (IPM). Retinal organoids were successfully generated from pluripotent stem cells. The expression of ECM components was examined in the retinal organoids and found to recapitulate human retinal development in vivo. Using functional blocking experiments, we were able to highlight an important role for IMPG1 and CD44 in the development of photoreceptors and IPM formation., (Copyright © 2018 Acta Materialia Inc. All rights reserved.)
- Published
- 2018
- Full Text
- View/download PDF
38. Cellular regeneration strategies for macular degeneration: past, present and future.
- Author
-
Chichagova V, Hallam D, Collin J, Zerti D, Dorgau B, Felemban M, Lako M, and Steel DH
- Subjects
- Humans, Macular Degeneration therapy, Photoreceptor Cells, Vertebrate transplantation, Retinal Degeneration therapy, Retinal Pigment Epithelium transplantation, Stem Cell Transplantation methods
- Abstract
Despite considerable effort and significant therapeutic advances, age-related macular degeneration (AMD) remains the commonest cause of blindness in the developed world. Progressive late-stage AMD with outer retinal degeneration currently has no proven treatment. There has been significant interest in the possibility that cellular treatments may slow or reverse visual loss in AMD. A number of modes of action have been suggested, including cell replacement and rescue, as well as immune modulation to delay the neurodegenerative process. Their appeal in this enigmatic disease relate to their generic, non-pathway-specific effects. The outer retina in particular has been at the forefront of developments in cellular regenerative therapies being surgically accessible, easily observable, as well as having a relatively simple architecture. Both the retinal pigment epithelium (RPE) and photoreceptors have been considered for replacement therapies as both sheets and cell suspensions. Studies using autologous RPE, and to a lesser extent, foetal retina, have shown proof of principle. A wide variety of cell sources have been proposed with pluripotent stem cell-derived cells currently holding the centre stage. Recent early-phase trials using these cells for RPE replacement have met safety endpoints and hinted at possible efficacy. Animal studies have confirmed the promise that photoreceptor replacement, even in a completely degenerated outer retina may restore some vision. Many challenges, however, remain, not least of which include avoiding immune rejection, ensuring long-term cellular survival and maximising effect. This review provides an overview of progress made, ongoing studies and challenges ahead.
- Published
- 2018
- Full Text
- View/download PDF
39. Modulation of Type-1 and Type-2 Cannabinoid Receptors by Saffron in a Rat Model of Retinal Neurodegeneration.
- Author
-
Maccarone R, Rapino C, Zerti D, di Tommaso M, Battista N, Di Marco S, Bisti S, and Maccarrone M
- Subjects
- Animals, Apoptosis drug effects, Apoptosis genetics, Dietary Supplements, Endocannabinoids metabolism, Gene Expression Regulation drug effects, Light, Neuroprotective Agents administration & dosage, Photoreceptor Cells drug effects, Photoreceptor Cells metabolism, Photoreceptor Cells radiation effects, Plant Extracts administration & dosage, Protein Transport, Rats, Receptor, Cannabinoid, CB1 genetics, Receptor, Cannabinoid, CB2 genetics, Retina pathology, Retina radiation effects, Retinal Degeneration drug therapy, Retinal Degeneration genetics, Retinal Degeneration pathology, Crocus chemistry, Neuroprotective Agents pharmacology, Plant Extracts pharmacology, Receptor, Cannabinoid, CB1 metabolism, Receptor, Cannabinoid, CB2 metabolism, Retina drug effects, Retina metabolism, Retinal Degeneration metabolism
- Abstract
Experimental studies demonstrated that saffron (Crocus sativus) given as a dietary supplement counteracts the effects of bright continuous light (BCL) exposure in the albino rat retina, preserving both morphology and function and probably acting as a regulator of programmed cell death [1]. The purpose of this study was to ascertain whether the neuroprotective effect of saffron on rat retina exposed to BCL is associated with a modulation of the endocannabinoid system (ECS). To this aim, we used eight experimental groups of Sprague-Dawley rats, of which six were exposed to BCL for 24 hours. Following retinal function evaluation, retinas were quickly removed for biochemical and morphological analyses. Rats were either saffron-prefed or intravitreally injected with selective type-1 (CB1) or type-2 (CB2) cannabinoid receptor antagonists before BCL. Prefeeding and intravitreally injections were combined in two experimental groups before BCL. BCL exposure led to enhanced gene and protein expression of retinal CB1 and CB2 without affecting the other ECS elements. This effect of BCL on CB1 and CB2 was reversed by saffron treatment. Selective CB1 and CB2 antagonists reduced photoreceptor death, preserved morphology and visual function of retina, and mitigated the outer nuclear layer (ONL) damage due to BCL. Of interest, CB2-dependent neuroprotection was more pronounced than that conferred by CB1. These data suggest that BCL modulates only distinct ECS elements like CB1 and CB2, and that saffron and cannabinoid receptors could share the same mechanism in order to afford retinal protection., Competing Interests: Competing Interests: This investigation was partially supported by the commercial companies Essse Caffè S.p.A. and Hortus Novus s.r.l. We confirm that this does not alter our adherence to PLOS ONE policies on sharing data and materials.
- Published
- 2016
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.