21 results on '"Zhu, D. K."'
Search Results
2. Kerr rotation enhancement and correlation between perpendicular anisotropy and Kerr effect in PtCu(Al,Ag)/Co multilayers.
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Wang, Y. J., Guo, Z. H., Zhu, D. K., and Shang, C. H.
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SEMICONDUCTOR doping ,ANISOTROPY ,KERR electro-optical effect - Abstract
Investigates the effect of copper, aluminum, silver doping into the platinum spacer layers on the perpendicular anisotropy and magneto-optical Kerr effect of cobalt multilayers. Experimental details; Results and discussion.
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- 1996
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3. Power of a simplified multivariate test for genetic linkage
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GORLOVA, O. Y., primary, AMOS, C. I., additional, ZHU, D. K., additional, WANG, W., additional, TURNER, S., additional, and BOERWINKLE, E., additional
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- 2002
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4. Assessing genetic linkage and association with robust components of variance approaches
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AMOS, C. I., primary, ZHU, D. K., additional, and BOERWINKLE, E., additional
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- 1996
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5. Development and application of specific polymerase chain reaction assay targeting the gyrB gene for rapid detection of Riemerella anatipestifer.
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Wang, X. P., Zhu, D. K., Wang, M. S., Cheng, A. C., Jia, R. Y., Chen, S., Chen, X. Y., and Tang, T.
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POLYMERASE chain reaction , *GRAM-negative bacterial diseases , *GENES , *RNA , *CLINICAL trials , *DIAGNOSIS - Abstract
The article presents a study related to development and application of specific polymerase chain reaction (PCR) assay for detection of Riemerella anatipestifer (RA) by targeting the gyrB gene. It mentions that a 16S rRNA sequence-based PCR method was compared with a Biolog bacterial identification system that is used in the detection of RA in clinical trials. It concludes that PCR was consistent and more specific than the Biolog bacterial identification system.
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- 2012
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6. Tumour necrosis factor 5′ promoter single nucleotide polymorphisms influence susceptibility to rheumatoid arthritis (RA) in immunogenetically defined multiplex RA families.
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Waldron-Lynch, F, Adams, C, Amos, C, Zhu, D K, McDermott, M F, Shanahan, F, Molloy, M G, and O’Gara, F
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AUTOIMMUNITY ,IMMUNOGENETICS ,GENETIC polymorphisms - Abstract
Tumour necrosis factor (TNF) plays a pivotal role in the pathogenesis of rheumatoid arthritis (RA) and it has been shown that the TNF-lymphotoxin (TNF-LT) region influences susceptibility to RA. To investigate the role of the TNF-LT locus further, inheritance of TNF 5' promoter alleles was determined in multiplex RA families. Six previously defined TNF promoter single nucleotide polymorphisms (SNPs) (-238, -308, -376, -857, -863, -1031) were observed in these families and in addition, a heretofore undocumented adenine (A) to cytosine (C) substitution at position -572 relative to the transcription start site was defined. TNF 5' promoter SNPs were found to co-segregate with specific TNF microsatellite haplotypes. In particular, the SNP -308A allele was found to be inherited with the TNF a2, b3, c1, d1, e3 (H2) microsatellite haplotype (P < 0.001) which had previously been found to be associated with RA in individuals heterozygous for the HLA-DR 'shared epitope' (SE). When the data were stratified by the presence of the SE with further stratification according to SE DR subtypes and analysed by transmission disequilibrium test (TDT) for which offspring were assumed independent, the -308A and -857T alleles were found to be associated with RA in patients carrying the SE (P = 0.0076 and 0.0063 respectively). The data were further stratified to analyse for association in individuals homozygous or heterozygous for SE alleles. Results showed that the -308A allele was significantly associated with RA susceptibility in individuals heterozygous for the SE (P < 0.001) with the significance only occurring in patients carrying HLA-DR4 (P < 0.001), while the -857T allele was significant in individuals homozygous for the SE (P = 0.0039). Further analysis using the pedigree disequilibrium test (PDT) which conservatively adjusts for all sources of familial correlation except that conferred by linkage disequilibrium still indicated a significant role for the -308A and -857T alleles... [ABSTRACT FROM AUTHOR]
- Published
- 2001
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7. Genetic analysis of multiplex rheumatoid arthritis families.
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Bali, D, Gourley, S, Kostyu, D D, Goel, N, Bruce, I, Bell, A, Walker, D J, Tran, K, Zhu, D K, Costello, T J, Amos, C I, and Seldin, M F
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HLA class II antigens ,GENETICS of rheumatoid arthritis - Abstract
To examine the genetic contribution of HLA and non-HLA genes in the etiopathogenesis of rheumatoid arthritis (RA), 60 Caucasian multiplex families were identified and DNA analyzed for over 52 markers including DRB1, DQA1 and DQB1 alleles. Many of the markers were chosen because of close proximity to candidate genes suggested by previous studies or models of pathogenesis. Sibling pair analysis (SIBPAL), relative pair analysis (RELPAL) and linkage studies using two different models of inheritance suggested linkage for the MHC and two additional chromosomal regions: chromosome 2 (D2S443 near CD8 and IG[sub κ]; 2p13-2p11.1), and chromosome 15 (CYP19-estrogen synthase; 15q15). No support was found for two chromosomal regions, lp36 and 3q13, recently suggested by other studies. We used transmission disequilibrium testing (TDT), conditional logistic regression, and segregation analysis to study the contributions that the shared epitope and TNF-c have in contributing to risk for RA. These studies provide additional evidence that the association of HLA alleles in RA patients from multiplex families is similar to that observed in sporadic disease, suggest candidate regions for further analysis and find additional support for an association of TNF-c alleles with RA susceptibility. [ABSTRACT FROM AUTHOR]
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- 1999
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8. Genetic analysis of multiplex rheumatoid arthritis families
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Bali, D., Gourley, S., Kostyu, D. D., Goel, N., Ian Bruce, Bell, A., Walker, D. J., Tran, K., Zhu, D. K., Costello, T. J., Amos, C. I., and Seldin, M. F.
9. Genetic variability in the tumor necrosis factor-lymphotoxin region influences susceptibility to rheumatoid arthritis
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Mulcahy, B., Waldron-Lynch, F., Michael F. McDermott, Adams, C., Amos, C. I., Zhu, D. K., Ward, R. H., Clegg, D. O., Shanahan, F., Molloy, M. G., and O Gara, F.
10. Detection, differentiation, and VP1 sequencing of duck hepatitis A virus type 1 and type 3 by a 1-step duplex reverse-transcription PCR assay.
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Wen, X. J., Chen, A. C., Wang, M. S., Jia, R. Y., Zhu, D. K., Chen, S., Liu, M. F., Liu, F., and Chen, X. Y.
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HEPATITIS A virus , *DUCKLINGS , *REVERSE transcriptase polymerase chain reaction , *DUCKS , *BIRD phylogeny , *POULTRY diseases , *VACCINATION , *DISEASES - Abstract
Duck hepatitis A virus (DHAV) is an infectious pathogen causing fatal duck viral hepatitis in ducklings. Although both the inactivated vaccines and live attenuated vaccines have been used to protect ducklings, DHAV-1 and DHAV-3 still cause significant serious damage to the duck industry in China and South Korea. For rapid detection, differentiation, and epidemic investigation of DHAV in China, a genotypespecific 1-step duplex reverse-transcription (RT) PCR assay was established in this study. The sensitivity and specificity of the developed RT-PCR assay was evaluated with nucleic acids extracted from 2 DHAV reference strains, and 9 other infectious viruses and bacteria. The genotype-specific primers amplified different size DNA fragments encompassing the complete VP1 gene of the DHAV-1 or DHAV-3. The assay detected the liver samples collected from experimentally infected ducklings and dead ducklings collected from different regions of China. Sequence analysis of these DNA fragments indicated that VP1 sequences of DHAV-1 can be used to distinguish wild type and vaccine strains. The phylogenetic analysis of VP1 sequences indicated that the developed RT-PCR assay can be used for epidemic investigation of DHAV-1 and DHAV-3. The developed RT-PCR assay can be used as a specific molecular tool for simultaneous detection, differentiation, and sequencing the VP1 gene of DHAV-1 and DHAV-3, which can be used for understanding the epidemiology and evolution of DHAV [ABSTRACT FROM AUTHOR]
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- 2014
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11. Efficacy study and field application of an inactivated new type gosling viral enteritis virus vaccine for domestic geese.
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Chen, S., Ma, G. P., Wang, M. S., Cheng, A. C., Zhu, D. K., Luo, Q. H., Jia, R. Y., Liu, F., Chen, X. Y., Han, X. F., Bo, Y., and Zhou, D. C.
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ADENOVIRUSES , *ANIMAL vaccination , *GEESE , *ENTERITIS , *CELLULAR immunity , *OPACITY (Optics) , *MICROPLATES , *FIBROBLASTS , *DISEASES - Abstract
New type gosling viral enteritis virus (NGVEV) caused a serious disease in naive juvenile goslings. In the described studies the performance of 2 vaccines was analyzed: a vaccine containing adjuvanted inactivated NGVEV and a vaccine containing adjuvanted inactivated NGVEV and recombinant goose IL-2. Breeder geese were subcutaneously vaccinated at the beginning of the egg production period with the vaccines. Breeder geese sham vaccinated with PBS served as control. The cellular and humoral immune responses of the vaccinated breeder geese, as well as the presence of maternally derived antibody to NGVEV, were investigated by ELISA, virus neutralization test, and lymphocyte proliferation assay, respectively. A significantly higher immunogenicity (P < 0.05) was induced by the inactivated NGVEV-recombinant goose IL-2 adjuvant vaccine compared with the inactivated NGVEV vaccine. The offspring of the vaccinated birds were challenged with virulent NGVEV (100 50% lethal dose) and the protective efficacy of the vaccines was determined. Furthermore, in a field trial the efficacy of the inactivated NGVEV vaccine was recorded from years 2003 to 2007. No clinical signs or abnormal health status were observed in the vaccinated breeder geese and the progeny. After a single application, >80% protection was shown in the progeny of geese vaccinated against NGVEV challenge for approximately 5 mo. The extensive field trials further demonstrated that vaccination of breeder geese with the inactivated NGVEV vaccine could be a safe and efficacious means to control NGVE disease. Moreover, the level of maternally derived NGVEV antibody titer in the egg yolk reflected the level of NGVEV antibodies in the breeder geese, suggesting that the egg yolk could be used to monitor the vaccination efficacy in commercial goose breeder flocks. [ABSTRACT FROM AUTHOR]
- Published
- 2011
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12. Humoral and cellular immune responses in adult geese induced by an inactivated vaccine against new type gosling viral enteritis virus.
- Author
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Chen, S., Cheng, A. C., Wang, M. S., Zhu, D. K., Jia, R. Y., Luo, Q. H., Liu, F., Chen, X. Y., and Yang, J. L.
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GEESE , *IMMUNOREGULATION , *ENTERITIS , *VACCINES , *INTERLEUKIN-2 , *CELLULAR immunity , *THERAPEUTICS - Abstract
To assess the immunogenicity of an inactivated new type gosling viral enteritis virus (NGVEV) vaccine, we investigated 3 different doses of the inactivated vaccine and the inactivated vaccine in conjunction with 3 different doses of recombinant goose interleukin-2 (rGoIL-2) adjuvant. A virus concentration of 105 50% embryo infective dose/mL was subcutaneously inoculated into adult geese divided into 6 groups. The dynamic changes of the humoral and cellular immunity responses elicited by the vaccines in the adult geese postvaccination (PV) were investigated using ELISA, virus neutralization test, and lymphocyte proliferation assay. The clearance of virus from the intestines of geese (175 d PV) was studied by histopathological examination and indirect immunofluorescence assay after virulent NGVEV challenge. This study showed that the inactivated NGVEV vaccine elicits strong humoral and cellular responses in the vaccinated adult geese. The absorbance values of specific anti-NGVEV anti-bodies, the neutralization antibody titer, and the lymphocyte proliferation index rapidly increased, peaked at about 28 d PV, progressed to the plateau stage, and then decreased slightly. The rGoIL-2 adjuvant enhanced the immune response, and this adjuvant in conjunction with the inactivated NGVEV vaccine induces a significantly higher specific anti-NGVEV antibody absorbance value, neutralization antibody titer, and lymphocyte proliferation index than the non-adjuvantinactivated NGVEV vaccine (P < 0.05). The inactivated NGVEV vaccine conferred adequate efficient ability to clear NGVEV in vaccinated geese even in the last phase of the vaccination period (175 d PV). The inactivated NGVEV vaccine (0.5 mL/goose) with 1,000 units of rGoIL-2 adjuvant/goose is the most effective dose, thereby eliciting the strongest humoral and cellular immunity responses and providing the most efficacious clearance of NGVEV in vivo. [ABSTRACT FROM AUTHOR]
- Published
- 2010
- Full Text
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13. Development and application of an indirect immunohistochemical method for the detection of duck plague virus vaccine antigens in paraffin sections and localization in the vaccinated duckling tissues.
- Author
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Shen, F. X., Ma, G. P., Cheng, A. C., Wang, M. S., Li, C. F., Sun, K. F., Chang, H., Zhu, D. K., Jia, R. Y., Chen, X. Y., and Sun, T.
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IMMUNOHISTOCHEMISTRY , *DUCK plague virus , *VACCINES , *ANTIGENS , *DUCKLINGS , *PHOSPHATASES , *ULTRACENTRIFUGATION - Abstract
The objective of the present study was to develop and apply a streptavidin-alkaline phosphatase labeling system of indirect immunohistochemistry (SP-IHC) to detect antigenic distribution and localization regularity of duck plague virus (DPV) vaccine antigens in paraformaldehyde-fixed paraffin-embedded tissues of experimentally vaccinated ducklings. Male New Zealand rabbits were immunized with purified DPV antigens, which were engaged by a combination of differential centrifugation and sucrose-density gradient ultracentrifugation. The rabbit anti-DPV polyclonal antibodies were purified and used as the primary anti- bodies. Forty-eight 28-d-old DPV-free Pekin ducklings were subcutaneously inoculated with attenuated DPV vaccine in the immunization group and sterile PBS in the control group. The tissues were collected at sequential time points between 4 h and 18 wk postvaccination (PV) and were prepared for SP-IHC observation. The presence of DPV-specific antigens was first observed in the liver and spleen at 12 h PV; in the bursa of Fabricius, thymus, Harderian gland, esophagus, and intestinal tract at 1 d PV; and in the heart, lung, kidney, pancreas, and brain at 3 d PV. The positive staining reaction could be detected in the vaccinated duckling tissues until 18 wk PV, and no positive staining cells could be observed in the controls. The highest levels of positive staining reaction were found in the liver, spleen, bursa of Fabricius, thymus, and intestinal tract, whereas a few DPV vaccine antigens were distributed in the heart, pancreas, and esophagus. The target cells had a ubiquitous distribution, especially in the mucosal epithelial cells, lamina propria cells, macrophages, hepatocytes, and lymphocytes, which served as the principal sites for antigen localization. These findings demonstrated that SP-IHC was a reliable method for detecting antigenic distribution and localization regularity of DPV vaccine antigens in routine paraffin sections. The present study may be useful for describing proliferation and distribution regularity of DPV vaccine in the vaccinated duckling tissues and enhance further studies and clinical application of attenuated DPV vaccine. [ABSTRACT FROM AUTHOR]
- Published
- 2010
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14. Histopathology, immunohistochemistry, in situ apoptosis, and ultrastructure characterization of the digestive and lymphoid organs of new type gosling viral enteritis virus experimentally infected gosling.
- Author
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Chen, S., Cheng, A. C., Wang, M. S., Zhu, D. K., Jia, R. Y., Luo, Q. H., Cui, H. M., Zhou, Y., Wang, Y., Xu, Z. W., Chen, Z. L., Chen, X. Y., and Wang, X. Y.
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DIGESTIVE organ microbiology , *DIGESTIVE system diseases , *LYMPHOID tissue , *HISTOPATHOLOGY , *VIRAL antigens , *PATHOGENIC microorganisms , *ADENOVIRUSES - Abstract
Here, for the first time, to colocalize new type gosling viral enteritis virus (NGVEV) with histological lesions and in situ apoptosis in the digestive organs (esophagus, proventriculus, gizzard, small intestine, cecum, rectum, liver, and pancreas) and the lymphoid organs (bursa of Fabricius, thymus, Harderian gland, and spleen) of experimentally infected goslings, portions of tissues were collected at sequential infection time points and examined by histopathology for histological lesions, immunohistochemical staining for viral antigens, ultrastructural observation by transmission electron microscope (TEM) for virus particles and apoptotic cells, and terminal deoxynucleotidyl transferase-mediated deoxyuridine triphosphate nick end labeling assay for in situ apoptosis. The hyperernia, hemorrhage, infiltration of lymphocytes, progressive lymphoid depletion, apoptosis, and necrosis were readily observed in the lymphoid organs and intestine tract by histopathological examination. The NGVEV particles and viral antigens widely appeared in the small intestine and bursa of Fabricius as early as 2 d postinfection (PT) by TEM and immunohistochemical staining, and the presence and quantity of it reached a maximum during 6 to 12 d PT. The principal sites for NGVEV were endothelial cells, epithelia, mucosal cells, glandular cells, fibrocytes, macrophages, and lymphocytes. A series of apoptotic morphological changes including chromatin condensation and margination, cytoplasmic shrinkage, and formation of apoptotic body were observed by TEM, and the number of apoptotic cells was largely increased from 4 d PT and peaked at 9 d PT by terminal deoxynucleotidyl transferase-mediated deoxyuridine triphosphate nick end labeling analysis. The histological organ lesions and apoptosis in vivo were generally associated with sites of NGVEV localization, which can be regarded as the cause of death. This work may shed light on the pathogenesis of new type gosling viral enteritis and put new insight into the pathogenesis of goose adenovirus. [ABSTRACT FROM AUTHOR]
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- 2010
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15. Erratum to "Histopathology, immunohistochemistry, in situ apoptosis, and ultrastructure characterization of the digestive and lymphoid organs of new type gosling viral enteritis virus experimentally infected gosling".
- Author
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Chen, S., Cheng, A. C., Wang, M. S., Zhu, D. K., Jia, R. Y., Luo, Q. H., Cui, H. M., Zhou, Y., Wang, Y., Xu, Z. W., Clien, Z. L., Chen, X. Y., and X. Y.Wang
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IMMUNOHISTOCHEMISTRY , *ENTERITIS - Abstract
A correction to the article "Histopathology, immunohistochemistry, in situ apoptosis, and ultrastructure characterization of the digestive and lymphoid organs of new type gosling viral enteritis virus experimentally infected gosling" in the 2012 issue is presented.
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- 2012
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16. ERRATUM.
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Chen, S., Cheng, A. C., Wang, M. S., Zhu, D. K., Jia, R. Y., Luo, Q. H., Liu, F., Chen, X. Y., and Yang, J. L.
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ENTERITIS , *IMMUNE response - Abstract
A correction to the article "Humoral and Cellular Immune Responses in Adult Geese Induced by an Inactivated Vaccine Against New Type Gosling Viral Enteritis Virus" that was published in a previous issue is presented.
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- 2011
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- View/download PDF
17. Identification and characterization of the duck enteritis virus (DEV) US2 gene.
- Author
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Gao J, Cheng AC, Wang MS, Jia RY, Zhu DK, Chen S, Liu MF, Liu F, Yang Q, Sun KF, and Chen XY
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- Animals, Cell Line, Ducks, Fibroblasts, Gene Expression, Mardivirus drug effects, Protein Transport, Recombinant Proteins, Viral Envelope Proteins isolation & purification, Viral Envelope Proteins metabolism, Virion, Mardivirus genetics, Viral Envelope Proteins genetics
- Abstract
The US2 protein has been reported to contribute to duck enteritis virus (DEV) infection; however, its kinetics and localization during infection, and whether it is a component of virion, have not been previously reported. To elucidate the function of DEV US2, US2 was amplified by polymerase chain reaction (PCR) and inserted into pET-32a(+); this was expressed, the recombinant US2 protein was purified, and a polyclonal antibody generated. In addition, the kinetics and localization of the US2 gene and protein were determined by quantitative real-time fluorescent PCR, ganciclovir (GCV), and cycloheximide (CHX) treatment, western-blot, and indirect immunofluorescence assay. The packaging of US2 into DEV virions was revealed by a protease protection assay. US2 was found to be transcribed 24 h post-infection (pi) and peaked at 72 h pi; the US2 protein was detected 48 h pi, except in the presence of GCV or CHX. US2 was packed into virions and also localized to the plasma membrane and cytoplasm in infected cells. The results showed that the DEV US2 is a late gene, and that its encoding protein could be a tegument component localized mainly in the cytoplasm. This study provides useful data for the further analysis of DEV US2, including an explanation for the genetic conservation among alphaherpesviruses.
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- 2015
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18. Adhesion and invasion to duck embryo fibroblast cells by Riemerella anatipestifer.
- Author
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Li L, Zhu DK, Zhou Y, Wang MS, Cheng AC, Jia RY, Chen S, Liu F, Yang QM, and Chen XY
- Subjects
- Animals, Bacterial Proteins genetics, Bacterial Proteins metabolism, Gene Expression Regulation, Bacterial physiology, Bacterial Adhesion physiology, Ducks embryology, Fibroblasts microbiology, Riemerella physiology
- Abstract
Here, we investigated adhesion and invasion of Riemerella anatipestifer (RA) to primary duck embryo fibroblast (DEF) cells. The ability of RA to adhere to, and more importantly, to invade DEF cells was demonstrated by using a gentamicin invasion assay and was confirmed by transmission electron microscopy (TEM). Adhesion of RA could be found by TEM after 1 h of inoculation. Both apoptosis and necrocytosis of DEF were indicated by TEM after 10 h of incubation, which suggested a complex mechanism of DEF cell death induced by RA. Our results showed that internalized RA had the ability to leave the DEF cells. Inhibition studies indicated that RA proteins play a role in adhesion. Moreover, invasion of RA to DEF cells was shown to require rearrangement of actin microfilaments and microtubular cytoskeletal elements. Because the adhesion and invasion ability of RA to DEF cells could be demonstrated in vitro, similar processes might occur in vivo, where DEF cells play a crucial role in the diffusion of RA in ducks.
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- 2012
- Full Text
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19. Mutational analysis and clinical correlation in Leber congenital amaurosis.
- Author
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Dharmaraj SR, Silva ER, Pina AL, Li YY, Yang JM, Carter CR, Loyer MK, El-Hilali HK, Traboulsi EK, Sundin OK, Zhu DK, Koenekoop RK, and Maumenee IH
- Subjects
- Adult, Blindness congenital, Blindness diagnosis, Carrier Proteins, Child, Child, Preschool, DNA Mutational Analysis, Female, Follow-Up Studies, Genotype, Humans, Infant, Male, Optic Atrophies, Hereditary diagnosis, Pedigree, Phenotype, Polymerase Chain Reaction, Polymorphism, Single-Stranded Conformational, cis-trans-Isomerases, Blindness genetics, Eye Proteins genetics, Guanylate Cyclase genetics, Homeodomain Proteins genetics, Mutation genetics, Optic Atrophies, Hereditary genetics, Proteins genetics, Trans-Activators genetics
- Abstract
Unlabelled: Leber congenital amaurosis (LCA, MIM 204001) is a clinically and genetically heterogeneous retinal disorder characterized by severe visual loss from birth, nystagmus, poor pupillary reflexes, retinal pigmentary or atrophic changes, and a markedly diminished electroretinogram (ERG)., Purpose: To examine 100 consecutive patients with LCA in order to assess the relative burden of the three known genes involved in LCA, namely retinal guanylyl cyclase (GUCY2D), retinal pigment epithelium protein ( RPE65), and the cone-rod homeobox (CRX), and to define their clinical correlates., Methods: Mutational analysis and detailed clinical examinations were performed in patients diagnosed with LCA at the Johns Hopkins Center for Hereditary Eye Diseases and the Montreal Children's Hospital., Results: Mutations were identified in 11% of our patients: GUCY2D mutations accounted for 6%, while RPE65 and CRX gene mutations accounted for 3% and 2%, respectively. The clinical presentation was variable; however, the visual evolution in patients with mutations in GUCY2D and CRX remained stable, while individuals with mutations in the RPE65 gene showed progressive visual loss., Conclusions: This study suggests that molecular diagnosis of Leber congenital amaurosis could provide important information concerning prognosis and course of treatment.
- Published
- 2000
20. Comparison of model-free linkage mapping strategies for the study of a complex trait.
- Author
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Amos CI, Krushkal J, Thiel TJ, Young A, Zhu DK, Boerwinkle E, and de Andrade M
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- Analysis of Variance, Chromosome Mapping methods, Chromosomes, Human, Pair 5, Female, Genetic Markers, Humans, Likelihood Functions, Lod Score, Male, Genetic Linkage, Models, Genetic, Quantitative Trait, Heritable
- Abstract
We compared several strategies for identifying and estimating effects from a genetic locus in the etiology of a complex trait. For our analyses we used data from simulated trait 1 and chromosome 5. Results from analysis of the first 20 replicates showed that a components of variance test provided considerably better power for identifying linkage than tests that consider pair differences. We also compared the power from constructing tests with a single marker, an approximate method using five markers jointly, or a multipoint analysis using all 25 markers on chromosome 5 jointly. Results from this analysis showed substantially better power when all markers were jointly used in the analysis. Results from considering all replicates showed that all methods of estimation provided maximal test statistics at the correct marker position, but the components of variance procedure provided more power to detect the correct position than other methods.
- Published
- 1997
- Full Text
- View/download PDF
21. Genetic variability in the tumor necrosis factor-lymphotoxin region influences susceptibility to rheumatoid arthritis.
- Author
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Mulcahy B, Waldron-Lynch F, McDermott MF, Adams C, Amos CI, Zhu DK, Ward RH, Clegg DO, Shanahan F, Molloy MG, and O'Gara F
- Subjects
- Disease Susceptibility, Female, Genetic Markers, Genotype, HLA-B Antigens genetics, HLA-DR Antigens genetics, Haplotypes, Humans, Linkage Disequilibrium, Male, Microsatellite Repeats genetics, Arthritis, Rheumatoid genetics, Genetic Variation genetics, Lymphotoxin-alpha genetics, Major Histocompatibility Complex genetics, Tumor Necrosis Factor-alpha genetics
- Abstract
The major histocompatibility complex class III tumor necrosis factor-lymphotoxin (TNF-LT) region (6p21.3) was investigated as a possible susceptibility locus for rheumatoid arthritis (RA). Inheritance of five TNF microsatellite markers was determined in 50 multiplex families. Overall, 47 different haplotypes were observed. One of these, the TNF a6, b5, c1, d3, e3 (H1) haplotype, was present in 35.3% of affected, but in only 20.5% of unaffected, individuals (P < .005). This haplotype accounted for 21.5% of the parental haplotypes transmitted to affected offspring and only 7.3% not transmitted to affected offspring (P = .0003). The TNF a6 and TNF c1 alleles were individually associated with RA (P = .0005 and .0008, respectively), as were the HLA-DRB1 "shared epitope" (SE) (P = .0001) and HLA-DRB1*0401 (P = .0018). Both univariate and bivariate conditional logistic regression analysis showed significant effects of TNF c1 and SE in increasing risk to RA (P < .001). Stratification by the presence of SE indicated an independent effect of the TNFc1 allele (P = .0003) and the HLA A1, B8, DR3 extended haplotype (always TNFa2, b3, c1, d1, e3) (P = .0027) in SE heterozygotes, while the H1 haplotype was associated with RA in SE homozygotes (P = .0018). The TNF-LT region appears to influence susceptibility to RA, distinct from HLA-DR.
- Published
- 1996
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