46 results on '"Ziwei Chang"'
Search Results
2. Nanopore targeted sequencing-based diagnosis of central nervous system infections in HIV-infected patients
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Xihong Yang, Shuilian Zhou, Ziwei Chang, Xiaotong Xi, Jiahui Li, Mengjiao Miao, Yaling Chen, Wei Chen, Hongying Zhang, Ran Ding, and Zhiliang Hu
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Nanopore targeted sequencing ,Central nervous system (CNS) infections ,HIV ,Cryptococcal meningitis ,Therapeutics. Pharmacology ,RM1-950 ,Infectious and parasitic diseases ,RC109-216 ,Microbiology ,QR1-502 - Abstract
Abstract Background Early and accurate etiological diagnosis is very important for improving the prognosis of central nervous system (CNS) infections in human immunodeficiency virus (HIV)-infected patients. The goal is not easily achieved by conventional microbiological tests. We developed a nanopore targeted sequencing (NTS) platform and evaluated the diagnostic performance for CNS infections in HIV-infected patients, with special focus on cryptococcal meningitis (CM). We compared the CM diagnostic performance of NTS with conventional methods and cryptococcal polymerase chain reaction (PCR). Methods This study included 57 hospitalized HIV-infected patients with suspected CNS infections from September 2018 to March 2022. The diagnosis established during hospitalization includes 27 cases of CM, 13 CNS tuberculosis, 5 toxoplasma encephalitis, 2 cytomegalovirus (CMV) encephalitis and 1 Varicella-zoster virus (VZV) encephalitis. The 2 cases of CMV encephalitis also have co-existing CM. Target-specific PCR amplification was used to enrich pathogen sequences before nanopore sequencing. NTS was performed on stored cerebrospinal fluid (CSF) samples and the results were compared with the diagnosis during hospitalization. Results 53 (93.0%) of the patients were male. The median CD4 cell count was 25.0 (IQR: 14.0–63.0) cells/uL. The sensitivities of CSF culture, India ink staining, cryptococcal PCR and NTS for CM were 70.4% (95%CI: 51.5 − 84.1%), 76.0% (95%CI: 56.6 − 88.5%), 77.8% (59.2 − 89.4%) and 85.2% (95%CI: 67.5 − 94.1%), respectively. All those methods had 100% specificity for CM. Our NTS platform could identify Cryptococcus at species level. Moreover, NTS was also able to identify all the 5 cases of toxoplasma encephalitis, 2 cases of CMV encephalitis and 1 VZV encephalitis. However, only 1 of 13 CNS tuberculosis cases was diagnosed by NTS, and so did Xpert MTB/RIF assay. Conclusions NTS has a good diagnostic performance for CM in HIV-infected patients and may have the ability of simultaneously detecting other pathogens, including mixed infections. With continuing improving of the NTS platform, it may be a promising alterative microbiological test for assisting with the diagnosis of CNS infections.
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- 2024
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3. Adsorption Site Regulations of [W–O]-Doped CoP Boosting the Hydrazine Oxidation-Coupled Hydrogen Evolution at Elevated Current Density
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Ge Meng, Ziwei Chang, Libo Zhu, Chang Chen, Yafeng Chen, Han Tian, Wenshu Luo, Wenping Sun, Xiangzhi Cui, and Jianlin Shi
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Self-powered H2 production system ,Electron redistribution ,[W–O] dopant ,Dehydrogenation kinetics ,Technology - Abstract
Highlights The [W–O] group with strong adsorption capacity is introduced into CoP to fabricate a bi-functional catalyst towards HER and HzOR. The cell voltage of HzOR coupled electrolyzer with 6W–O–CoP/NF as both anode and cathode catalysts is 1.634 V lower than that of the water splitting system at 100 mA cm−2. A proof-of-concept self-powered H2 production system is assembled to realize the H2 evolution rate of 3.53 mmol cm−2 h−1.
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- 2023
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4. Human islet amyloid polypeptide oligomers stabilized and probed by MAS NMR
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Ziwei Chang and Zhengfeng Zhang
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Physical and theoretical chemistry ,QD450-801 ,Analytical chemistry ,QD71-142 - Published
- 2024
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5. Active site recovery and N-N bond breakage during hydrazine oxidation boosting the electrochemical hydrogen production
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Libo Zhu, Jian Huang, Ge Meng, Tiantian Wu, Chang Chen, Han Tian, Yafeng Chen, Fantao Kong, Ziwei Chang, Xiangzhi Cui, and Jianlin Shi
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Science - Abstract
Abstract Substituting hydrazine oxidation reaction for oxygen evolution reaction can result in greatly reduced energy consumption for hydrogen production, however, the mechanism and the electrochemical utilization rate of hydrazine oxidation reaction remain ambiguous. Herein, a bimetallic and hetero-structured phosphide catalyst has been fabricated to catalyze both hydrazine oxidation and hydrogen evolution reactions, and a new reaction path of nitrogen-nitrogen single bond breakage has been proposed and confirmed in hydrazine oxidation reaction. The high electro-catalytic performance is attributed to the instantaneous recovery of metal phosphide active site by hydrazine and the lowered energy barrier, which enable the constructed electrolyzer using bimetallic phosphide catalyst at both sides to reach 500 mA cm−2 for hydrogen production at 0.498 V, and offer an enhanced hydrazine electrochemical utilization rate of 93%. Such an electrolyzer can be powered by a bimetallic phosphide anode-equipped direct hydrazine fuel cell, achieving self-powered hydrogen production at a rate of 19.6 mol h−1 m−2.
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- 2023
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6. Chromosome 1q21 gain is an adverse prognostic factor for newly diagnosed multiple myeloma patients treated with bortezomib-based regimens
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Xiao Liu, Shuangshuang Jia, Yuping Chu, Biao Tian, Yaya Gao, Chunyan Zhang, Yanhua Zheng, Weijing Jia, Xiangxiang Liu, Ruifeng Yuan, Na Zhang, Juan Feng, Hongjuan Dong, Xiaoli Xin, Ziwei Chang, Zhengcong Cao, Hailong Tang, and Guangxun Gao
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multiple myeloma ,1q21 ,bortezomib ,cytogenetics introduction ,prognostic factor and survival ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Chromosome 1q21 aberration is one of the most common cytogenetic abnormalities in multiple myeloma, and is considered an important prognostic factor. The present study analyzed the clinical relevance and prognostic impact of 1q21 gain in 194 patients with newly diagnosed multiple myeloma treated with bortezomib-based regimens. 1q21 gain was detected in 45.9% (89/194) of patients, and those with 1q21 gain had a worse prognosis. Strikingly, our results showed that excluding the effects of other coinciding genetic anomalies, patients carrying at least four copies of 1q21 had worse survival outcome. Moreover, del(13q) strongly correlates with 1q21 gain, and the coexistence of del(13q) and 1q21 gain plays an important role in reducing PFS and OS times. Therefore, 1q21 gain should be considered a high-risk feature in multiple myeloma patients treated with a bortezomib-based regimen.
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- 2022
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7. Construction of CoP2-Mo4P3/NF Heterogeneous Interfacial Electrocatalyst for Boosting Water Splitting
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Yafeng Chen, Ge Meng, Ziwei Chang, Ningning Dai, Chang Chen, Xinmei Hou, and Xiangzhi Cui
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heterogeneous interface ,transition metal phosphide ,bifunctional electrocatalyst ,overall water splitting ,Chemistry ,QD1-999 - Abstract
Developing highly efficient, cost effective and durable bifunctional electrocatalyst remains a key challenge for overall water splitting. Herein, a bifunctional catalyst CoP2-Mo4P3/NF with rich heterointerfaces was successfully prepared by a two-step hydrothermal-phosphorylation method. The synergistic interaction between CoP2 and Mo4P3 heterogeneous interfaces can optimize the electronic structure of active sites, leading to the weak adsorption of H on the Mo sites and the increased redox activity of the Co site, resultantly improving the HER/OER bifunctional catalytic activity. The synthesized CoP2-Mo4P3/NF catalyst exhibits excellent electrocatalytic activity in 1.0 M KOH with low overpotentials of 77.6 and 300.3 at 100 mA cm−2 for HER and OER, respectively. Additionally, the assembled CoP2-Mo4P3/NF||CoP2-Mo4P3/NF electrolyzer delivers a current density of 100 mA cm−2 at a cell voltage of 1.59 V and remains stable for at least 370 h at 110 mA cm−2, indicating the potential application prospective in water splitting.
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- 2022
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8. Molecular basis for curvature formation in SepF polymerization.
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Wenjing Liu, Chang Zhang, Huawei Zhang, Shaojie Ma, Jing Deng, Daping Wang, Ziwei Chang, and Jun Yang
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CURVATURE ,PROTEIN structure ,UNIFORM spaces ,CELL division ,BACILLUS subtilis ,HELICES (Algebraic topology) - Abstract
The self-assembly of proteins into curved structures plays an important role in many cellular processes. One good example of this phenomenon is observed in the septum-forming protein (SepF), which forms polymerized structures with uniform curvatures. SepF is essential for regulating the thickness of the septum during bacteria cell division. In Bacillus subtilis, SepF polymerization involves two distinct interfaces, the β-β and α-α interfaces, which define the assembly unit and contact interfaces, respectively. However, the mechanism of curvature formation in this step is not yet fully understood. In this study, we employed solid-state NMR (SSNMR) to compare the structures of cyclic wild-type SepF assemblies with linear assemblies resulting from a mutation of G137 on the β-β interface. Our results demonstrate that while the sequence differences arise from the internal assembly unit, the dramatic changes in the shape of the assemblies depend on the α-α interface between the units. We further provide atomic-level insights into how the angular variation of the α2 helix on the α-α interface affects the curvature of the assemblies, using a combination of SSNMR, cryo-electron microscopy, and simulation methods. Our findings shed light on the shape control of protein assemblies and emphasize the importance of interhelical contacts in retaining curvature. [ABSTRACT FROM AUTHOR]
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- 2024
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9. Ultrauniformly Dispersed Cu Nanoparticles Embedded in N-Doped Carbon as a Robust Oxygen Electrocatalyst
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Yifan Huang, Fantao Kong, Han Tian, Fenglai Pei, Yafeng Chen, Ge Meng, Ziwei Chang, Chang Chen, Xiangzhi Cui, and Jianlin Shi
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Renewable Energy, Sustainability and the Environment ,General Chemical Engineering ,Environmental Chemistry ,General Chemistry - Published
- 2022
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10. Efficient ammonia electrosynthesis by coupling to concurrent methanol oxidation
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Ziwei Chang, Fantao Kong, Min Wang, Shuhe Han, Xiangzhi Cui, Han Tian, Yafeng Chen, Ge Meng, Chang Chen, Yang Liu, Yifan Huang, and Jianlin Shi
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Chemistry (miscellaneous) ,Organic Chemistry ,Physical and Theoretical Chemistry - Published
- 2022
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11. An electrochemically reconstructed WC/WO2–WO3 heterostructure as a highly efficient hydrogen oxidation electrocatalyst
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Ge Meng, Heliang Yao, Han Tian, Fantao Kong, Xiangzhi Cui, Shaowen Cao, Yafeng Chen, Ziwei Chang, Chang Chen, and Jianlin Shi
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Renewable Energy, Sustainability and the Environment ,General Materials Science ,General Chemistry - Abstract
A WC/WO2–WO3 nanosheet heterostructure has been fabricated by an in situ electrochemical reconstruction approach, which significantly elevates the HOR performance by 7 times owing to the synergistic catalytic effect between WC and WOx species.
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- 2022
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12. Construction of CoP
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Yafeng, Chen, Ge, Meng, Ziwei, Chang, Ningning, Dai, Chang, Chen, Xinmei, Hou, and Xiangzhi, Cui
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Developing highly efficient, cost effective and durable bifunctional electrocatalyst remains a key challenge for overall water splitting. Herein, a bifunctional catalyst CoP
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- 2022
13. CoW Bimetallic Carbide Nanocatalysts: Computational Exploration, Confined Disassembly-Assembly Synthesis and Alkaline/Seawater Hydrogen Evolution
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Ge Meng, Yafeng Chen, Rongyan Wang, Libo Zhu, Heliang Yao, Chang Chen, Ziwei Chang, Han Tian, Fantao Kong, Xiangzhi Cui, and Jianlin Shi
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Biomaterials ,General Materials Science ,General Chemistry ,Biotechnology - Abstract
Earth-abundant tungsten carbide exhibits potential hydrogen evolution reaction (HER) catalytic activity owing to its Pt-like d-band electronic structure, which, unfortunately, suffers from the relatively strong tungsten-hydrogen binding, deteriorating its HER performance. Herein, a catalyst design concept of incorporating late transition metal into early transition metal carbide is proposed for regulating the metal-H bonding strength and largely enhancing the HER performance, which is employed to synthesize CoW bi-metallic carbide Co
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- 2022
14. Engineering single MnN4 atomic active sites on polydopamine-modified helical carbon tubes towards efficient oxygen reduction
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Chang Chen, Fantao Kong, Xiangzhi Cui, Jianlin Shi, Hongliang Dong, Ge Meng, Yafeng Chen, Ziwei Chang, Han Tian, and Lingxin Peng
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Battery (electricity) ,Materials science ,biology ,Renewable Energy, Sustainability and the Environment ,Energy Engineering and Power Technology ,Active site ,chemistry.chemical_element ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,Nitrogen ,0104 chemical sciences ,Catalysis ,chemistry ,Chemical engineering ,biology.protein ,Molecule ,General Materials Science ,Density functional theory ,0210 nano-technology ,Carbon ,Power density - Abstract
Among various earth-abundant and noble metal-free catalysts for oxygen reduction reaction (ORR), Mn and N co-doped carbon (Mn-N-C) is highly desirable and promising, which, however, suffer from the limited amount of active sites largely abating its ORR catalytic performance. Herein we demonstrate an effective strategy to elevate the ORR active site density by designing a helical graphitized carbon tubes to highly disperse the single Mn atomic sites coordinated with nitrogen. The obtained polydopamine-modified helical MnNC-PDA-700 catalyst shows excellent ORR electrocatalytic performance with a half-wave potential of 0.87 V and extra-high Zn-air battery power density of 122.7 mW cm−2, which are comparable to and even higher than those of Pt/C. Such an excellent electrocatalytic performance is attributed to the much enhanced amount of MnN4 active sites created on the helical graphitized carbon tubes owing to high surface area helical structure of the carbon tubes and the strong bonding of polydopamine molecules onto the tubes. The density functional theory (DFT) calculations further confirm that the MnN4 sites are the origin of the superior ORR activity via a 4e− pathway in alkaline media.
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- 2021
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15. Active site recovery and N-N bond breakage during hydrazine oxidation boosting the electrochemical hydrogen production
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Libo Zhu, Jian Huang, Ge Meng, Tiantian Wu, Chang Chen, Han Tian, Yafeng Chen, Fantao Kong, Ziwei Chang, Xiangzhi Cui, and Jianlin Shi
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Multidisciplinary ,General Physics and Astronomy ,General Chemistry ,General Biochemistry, Genetics and Molecular Biology - Abstract
Using hydrazine oxidation reaction (HzOR) substituting for oxygen evolution reaction can realize hydrogen production at largely reduced energy consumption. While the HzOR mechanism and the electrochemical utilization rate of hydrazine are still ambiguous. Herein, a bimetallic phosphide heterostructure nanoarrays (Ni-Co-P/NF) fabricated by an interface engineering strategy was used to catalyze both HzOR and hydrogen evolution reaction (HER), and more intensively, probe the HzOR mechanism. The extra-high HzOR performance is attributed to the instantaneous recovery of metal phosphide active site by hydrazine and the extremely low energy barrier with even a new HzOR pathway of N-N bond breakage, which enables the electrolyzer catalyzed by Ni-Co-P/NF to reach 500 mA cm-2 for H2 production at as low as 0.498 V, and offers a high hydrazine electrochemical utilization rate of 93%. The constructed electrolyzer can be powered by the direct hydrazine fuel cell with Ni-Co-P/NF as anodic catalyst, achieving self-powered hydrogen production at the rate up to 19.6 mol h-1 m-2.
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- 2022
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16. High cytomegalovirus viral load is associated with 182-day all-cause mortality in hospitalized people with human immunodeficiency virus (PWH)
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Mingxia Fang, Xiaoling Lin, Congyue Wang, Xihong Yang, Jiahui Li, Ziwei Chang, Yuanyuan Zhang, Hongxia Wei, Zhihang Peng, and Zhiliang Hu
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Microbiology (medical) ,Infectious Diseases - Abstract
Background Cytomegalovirus (CMV) infection is associated with increased mortality in persons with HIV (PWH). It is less clear whether CMV infection is still associated with mortality when routinely screened and adequately treated. Methods This retrospective cohort study recruited 1003 hospitalized adults with HIV with CD4 cell counts Results The median (IQR) CD4 cell count of patients was 33 (13–84) cells/μL. The prevalence of CMV DNAemia was 39.8% (95% CI: 36.7–42.9%) and was significantly associated with CD4 cell count. The 182-day all-cause mortality was 9.9% (95% CI: 8.0–11.7%). Univariable analysis showed that, compared with BLQ, LVL and HVL were associated with 1.73-fold and 3.81-fold increased risks of mortality, respectively (P = .032 and P < .001). After adjustment for predefined confounding factors, HVL but not LVL was still associated with increased risk of mortality (adjusted hazard ratio: 2.63; 95% CI: 1.61–4.29; P < .001). However, for patients on effective antiretroviral therapy, the impact of HVL on 182-day mortality was not significant (P = .713). Conclusions High CMV viral load in hospitalized PWH was associated with higher mortality, even when identified early by screening. Optimalization of the management for those patients needs to be explored in future studies.
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- 2022
17. Structural Insights into the Interaction between
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Chang, Zhang, Wenjing, Liu, Jing, Deng, Shaojie, Ma, Ziwei, Chang, and Jun, Yang
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Cytoskeletal Proteins ,Magnetic Resonance Spectroscopy ,Bacterial Proteins ,Cell Division ,Bacillus subtilis - Abstract
In many species of Gram-positive bacteria, SepF participated in the membrane tethering of FtsZ Z-ring during bacteria division. However, atomic-level details of interaction between SepF and FtsZ in an assembled state are lacking. Here, by combining solid-state NMR (SSNMR) with biochemical analyses, the interaction of
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- 2022
18. Fe 2+ /Fe 3+ Cycling for Coupling Self‐Powered Hydrogen Evolution and Preparation of Electrode Catalysts
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Chang Chen, Zhengqian Fu, Fenggang Qi, Yafeng Chen, Ge Meng, Ziwei Chang, Fantao Kong, Libo Zhu, Han Tian, Haitao Huang, Xiangzhi Cui, and Jianlin Shi
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General Chemistry ,General Medicine ,Catalysis - Published
- 2022
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19. Size effects of platinum particles@CNT on HER and ORR performance
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Ge Meng, Jianlin Shi, Chang Chen, Lianjun Wang, Ziwei Chang, Han Tian, Wan Jiang, Xiangzhi Cui, Zhonghua Ma, Yafeng Chen, and Lingxin Peng
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Materials science ,chemistry.chemical_element ,02 engineering and technology ,Carbon nanotube ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,Mass activity ,0104 chemical sciences ,Catalysis ,law.invention ,Metal ,Chemical engineering ,chemistry ,law ,visual_art ,visual_art.visual_art_medium ,Particle ,General Materials Science ,Particle size ,0210 nano-technology ,Efficient catalyst ,Platinum - Abstract
Platinum (Pt) is an efficient catalyst for hydrogen evolution reaction (HER) and oxygen reduction reaction (ORR), but the debate of the relevance between the Pt particle size and its electrocatalytic activity still exist. The strong metal-support interaction (SMSI) between the metal and carrier causes the charge transfer and mass transport from the support to the metal. Herein, Pt species (0.5 wt.%) with various particle sizes supported on carbon nanotubes (CNTs) have been synthesized by a photo-reduction method. The ~1.5 nm-sized Pt catalyst shows much higher HER performance than the counterparts in all pH solutions, and the mass activity of it is even 23–36 times that of Pt/C. While for ORR, the ~3 nm-sized Pt catalyst exhibits the optimal performance, and the mass activity is 3 times and even 16 times that of Pt/C in acidic and alkaline media, respectively. The high HER and ORR performances of the ~1.5 nm- and ~3 nm-sized Pt catalysts benefit from the SMSI between Pt and the CNTs matrix and the higher ratio of face sites to edge sites, which is meaningful for the design of efficient electrocatalysts for renewable energy application.
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- 2020
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20. Fe
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Chang, Chen, Zhengqian, Fu, Fenggang, Qi, Yafeng, Chen, Ge, Meng, Ziwei, Chang, Fantao, Kong, Libo, Zhu, Han, Tian, Haitao, Huang, Xiangzhi, Cui, and Jianlin, Shi
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A novel Zn-Fe flow battery featuring an Fe
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- 2022
21. Dual metal-organic frameworks-derived Fe-atomic sites bounded to fine Fe/Fe C nanoparticles for enhanced oxygen electroreduction
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Meixin Chen, Fantao Kong, Heliang Yao, Yafeng Chen, Ge Meng, Ziwei Chang, Chang Chen, Han Tian, Lianzhou Wang, Xiangzhi Cui, and Jianlin Shi
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General Chemical Engineering ,Environmental Chemistry ,General Chemistry ,Industrial and Manufacturing Engineering - Published
- 2023
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22. The co-effect of copper and lipid vesicles on Aβ aggregation
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Xuehang, Zhu, Wenjing, Liu, Weijing, Zhao, Ziwei, Chang, and Jun, Yang
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Ions ,Amyloid beta-Peptides ,Metals ,Biophysics ,Cell Biology ,Lipids ,Biochemistry ,Copper - Abstract
Both metal ions and lipid membranes have a wide distribution in amyloid plaques and play significant roles in AD pathogenesis. Although influences of different metal ions or lipid vesicles on the aggregation of Aβ peptides have been extensively studied, their combined effects are less understood. In this study, we reported a unique effect of copper ion on Aβ aggregation in the presence of lipid vesicles, different from other divalent metal ions. Cu
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- 2023
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23. Interfacial engineering of Co-doped 1T-MoS2 coupled with V2C MXene for efficient electrocatalytic hydrogen evolution
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Yafeng Chen, Ge Meng, Tao Yang, Chang Chen, Ziwei Chang, Fantao Kong, Han Tian, Xiangzhi Cui, Xinmei Hou, and Jianlin Shi
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General Chemical Engineering ,Environmental Chemistry ,General Chemistry ,Industrial and Manufacturing Engineering - Published
- 2022
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24. N-Doped Carbon Electrocatalyst: Marked ORR Activity in Acidic Media without the Contribution from Metal Sites?
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Fantao Kong, Xiangzhi Cui, Yifan Huang, Heliang Yao, Yafeng Chen, Han Tian, Ge Meng, Chang Chen, Ziwei Chang, and Jianlin Shi
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General Chemistry ,General Medicine ,Catalysis - Abstract
Fe-N-C electrocatalysts have been demonstrated to be the most promising substitutes for benchmark Pt/C catalysts for the oxygen reduction reaction (ORR). Herein, we report that N-doped carbon materials with trace amounts of iron (0-0.08 wt. %) show excellent ORR activity and durability comparable and even superior to those of Pt/C in both alkaline and acidic media without significant contribution by the metal sites. Such an N-doped carbon (denoted as N-HPCs) features a hollow and hierarchically porous architecture, and more importantly, a noncovalently bonded N-deficient/N-rich heterostructure providing the active sites for oxygen adsorption and activation owing to the efficient electron transfer between the layers. The primary Zn-air battery using N-HPCs as the cathode delivers a much higher power density of 158 mW cm
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- 2021
25. Structural Mechanism of Barriers to Interspecies Seeding Transmissibility of Full‐Length Prion Protein Amyloid
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Kunqian Yu, Shaojie Ma, Jing Deng, Jun Yang, Tao Ma, Ziwei Chang, and Weijing Zhao
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Steric effects ,Gene isoform ,Amyloid ,Prions ,Amyloidogenic Proteins ,Scrapie ,Molecular Dynamics Simulation ,010402 general chemistry ,Fibril ,01 natural sciences ,Biochemistry ,Prion Proteins ,Protein Structure, Secondary ,Mice ,Residue (chemistry) ,Molecular dynamics ,Species Specificity ,Side chain ,Animals ,Humans ,Protein Isoforms ,Amino Acid Sequence ,Amino Acids ,Nuclear Magnetic Resonance, Biomolecular ,Molecular Biology ,Sequence Homology, Amino Acid ,010405 organic chemistry ,Chemistry ,Organic Chemistry ,0104 chemical sciences ,Biophysics ,Molecular Medicine - Abstract
A puzzling feature of prion diseases is the cross-species barriers. The detailed molecular mechanisms underlying these interspecies barriers remain poorly understood because of a lack of high-resolution structural information on the scrapie isoform of the prion protein (PrPSc ). In this study we identified the critical role of the residues 165/167 in the barrier to seeding mouse PrP (mPrP) fibril seeds to human cellular prion protein (PrPC ). Solid-state NMR revealed a C-terminal β-sheet core spanning residues 165-230 and the packing arrangement of mPrP fibrils. Residues 165/167 are located on one end of the fibril core. Molecular dynamics simulations demonstrated that the stabilities of the seeding-induced β-strand structures are significantly impacted by hydrogen bonds involving the side chain of residue 167 and steric resistance involving residue 165. These findings suggest that the α2-β2 loop containing residues 165/167 could be the initial site of seed-template conformational conversion.
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- 2019
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26. Creation of densely exposed and cavity-edged single Fe active sites for enhanced oxygen electroreduction
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Fantao Kong, Yifan Huang, Meixin Chen, Ge Meng, Han Tian, Yafeng Chen, Ziwei Chang, Chang Chen, Wenping Sun, Xiangzhi Cui, and Jianlin Shi
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Process Chemistry and Technology ,Catalysis ,General Environmental Science - Published
- 2022
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27. Risk factors and prognosis analysis of acute myeloid leukemia in children
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Xiaoli, Xin, Huafeng, Zhu, Ziwei, Chang, Miaojuan, Feng, Shan, Gao, Liping, Hou, and Xiaoli, Su
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Male ,Leukemia, Myeloid, Acute ,Risk Factors ,Child, Preschool ,Humans ,Female ,Prognosis - Abstract
To explore the efficacy and related prognostic factors of acute myeloid leukemia (AML) in children except acute promyelocytic leukemia (APL).The clinical data of 89 non-APL children with AML treated in our hospital were retrospectively analyzed. The remission status was analyzed after chemotherapy, the long-term survival was evaluated using the Kaplan-Meier method, and the influencing factors for the prognosis were detected using univariate and multivariate Cox regression analyses.Complete remission (CR) was realized in 71 cases (79.8%) after the first course of treatment, 13 cases (14.6%) after the second course of treatment, and 5 cases (5.6%) after the third course of treatment. The 5-year event-free survival (EFS) rate and overall survival (OS) rate were 53.9% and 66.3%, respectively. The children were divided into low-risk group (n=31), middle-risk group (n=36) and high-risk group (n=22). In the three groups, the 5-year OS rate was 74.2%, 72.2% and 45.5%, respectively, while the 5-year EFS rate was 67.7%, 55.6% and 31.8%, respectively. Extramedullary infiltration at the time of initial diagnosis [HR=3.313 (95% CI: 1.748-13.664)], CD56+ [HR=1.592 (95% CI: 1.172-2.255)] and recurrence time1 year [HR=3.040 (95% CI: 1.087-5.508)] were independent risk factors affecting the prognosis, and CR achieved after the first course [HR=0.786 (95% CI: 0.228-0.803)] was an independent factor improving the prognosis of patients.The prognosis is poor in non-APL children with AML who have extramedullary infiltration at the time of initial diagnosis, CD56+ and recurrence time1 year, and CR achieved after the first course is an independent factor improving the prognosis of patients. The long-term EFS rate is significantly lower in high-risk group than that in low- and middle-risk groups. Intensive chemotherapy or early hematopoietic stem cell transplantation should be performed for high-risk patients.
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- 2021
28. Amyloid-like aggregation and fibril core determination of TDP-43 C-terminal domain
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Weijing Zhao, Jun Yang, Jing Deng, and Ziwei Chang
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0301 basic medicine ,Amyloid ,Cytoplasmic inclusion ,Protein Conformation ,Biophysics ,TAR DNA-Binding Protein 43 ,Protein aggregation ,Fibril ,Biochemistry ,Inclusion bodies ,03 medical and health sciences ,0302 clinical medicine ,Protein Domains ,mental disorders ,Humans ,Molecular Biology ,Nuclear Magnetic Resonance, Biomolecular ,Amyloid like ,Inclusion Bodies ,Chemistry ,C-terminus ,nutritional and metabolic diseases ,Cell Biology ,Nuclear magnetic resonance spectroscopy ,nervous system diseases ,DNA-Binding Proteins ,030104 developmental biology ,030220 oncology & carcinogenesis - Abstract
Cytoplasmic inclusion of TAR DNA-binding protein 43 (TDP-43) is a hallmark of most ALS (amyotrophic lateral sclerosis) and FTLD (Frontotemporal dementia), yet the aggregation of TDP-43 remains unclear. In this study, we proved the existence of amyloid-like structures of C-terminal domain of TDP-43 (TDP-C) in bacterial inclusion bodies (IBs), and obtained a homogenous fibril sample by seeding from the components of aggregated TDP-C in Escherichiacoli IBs. The results from solid-state NMR spectroscopy suggest that the homogenous fibrils were seeded from a tiny amount of aggregated TDP-C compositions in IBs; the structure characteristics of the rigid fibril core are identified of β-rich structures, and show subtle relativity with the hydrophobicity of residues. Our study here provides a further understanding of TDP-43 protein aggregation and fibrillation.
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- 2020
29. Pt NPs-loaded siloxene nanosheets for hydrogen co-evolutions from Zn-H2O fuel cells-powered water-splitting
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Chang Chen, Han Tian, Zhengqian Fu, Xiangzhi Cui, Fantao Kong, Ge Meng, Yafeng Chen, Fenggang Qi, Ziwei Chang, Libo Zhu, Haitao Huang, Bao Yu Xia, and Jianlin Shi
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Process Chemistry and Technology ,Catalysis ,General Environmental Science - Published
- 2022
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30. Corrigendum to 'SnO2/CeO2 nanoparticle-decorated mesoporous ZSM-5 as bifunctional electrocatalyst for HOR and ORR' [Chem. Eng. J. 417 (2021) 127913]
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Han Tian, Xiangzhi Cui, Ziwei Chang, Zhonghua Ma, Chang Chen, Yafeng Chen, Lingxin Peng, Ge Meng, and Jianlin Shi
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chemistry.chemical_compound ,Chemical engineering ,Chemistry ,General Chemical Engineering ,Environmental Chemistry ,Nanoparticle ,General Chemistry ,ZSM-5 ,Bifunctional ,Mesoporous material ,Electrocatalyst ,Industrial and Manufacturing Engineering - Published
- 2022
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31. Expression Procedure Optimization of Carassius aurantus CYP1A in Shewanella Using Plasmid Construction Strategy
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Yunqi Ma, Ming Lu, Ziwei Chang, Chu Lee, Hae-Kyun Yoo, and Jang-Su Park
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Biomedical Engineering ,Bioengineering ,Applied Microbiology and Biotechnology ,Biotechnology - Published
- 2018
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32. Nonsurgical Secondary Prophylaxis of Esophageal Variceal Bleeding in Cirrhotic Patients: A Systematic Review and Network Meta-analysis
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Xingyu Li, Jing Wang, Liwei Jing, Xuan Shi, Lizhuan Ma, Xiujing Zhang, Ziwei Chang, Hui Liu, Zhiting Li, Qiumeng Zhang, Chao Zhang, and Yan-bo Mo
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Liver Cirrhosis ,medicine.medical_specialty ,medicine.medical_treatment ,Network Meta-Analysis ,Argon plasma coagulation ,Cochrane Library ,Placebo ,Esophageal and Gastric Varices ,Gastroenterology ,law.invention ,03 medical and health sciences ,0302 clinical medicine ,Esophageal varices ,Randomized controlled trial ,law ,Internal medicine ,Sclerotherapy ,medicine ,Secondary Prevention ,Humans ,Ligation ,business.industry ,medicine.disease ,030220 oncology & carcinogenesis ,Meta-analysis ,030211 gastroenterology & hepatology ,Portasystemic Shunt, Transjugular Intrahepatic ,business ,Gastrointestinal Hemorrhage ,Transjugular intrahepatic portosystemic shunt ,Systematic Reviews as Topic - Abstract
Introduction The aim of this study was to evaluate the effectiveness of nonsurgical secondary prophylaxis interventions for esophageal varices (EV) rebleeding in cirrhotic patients using network meta-analysis. Materials and methods Secondary prophylaxis of EV rebleeding in cirrhosis is searched on PubMed, Embase, and the Cochrane Library databases. The quality of literatures was extracted by 2 independent investigators according to the requirements of Cochrane Handbook for Systematic Reviews of Interventions, Version 5.0.0. Meta-analysis was performed on Review Manager 5.3 software for the incidence of cirrhosis EV rebleeding, rebleeding-related mortality, and overall mortality; and STATA 15.1 software was used for network meta-analysis. Results In all, 57 randomized controlled trials were reviewed. Endoscopic band ligation (EBL)+argon plasma coagulation has not been recommended by guidelines, and it is rarely used; the number of existing studies and the sample size are small. Considering poor stability of the combined results, these studies were excluded; 55 literatures were included. In terms of reducing the incidence of rebleeding, transjugular intrahepatic portosystemic shunt (TIPS) surface under the cumulative ranking curve (SUCRA) (94.3%) was superior to EBL+endoscopic injection sclerotherapy (EIS) (84.4%), EIS+β-blockers (77.9%), EBL (59.8%), EBL+β-blockers+isosorbide-5-mononitrate (52.7%), EBL+β-blockers (51.4%), EIS (34.2%), β-blockers+isosorbide-5-mononitrate (23.7%), β-blockers (20.8%), and placebo (0.8%). In reducing rebleeding-related mortality, TIPS SUCRA (87.2%) was more efficacious than EBL+EIS (83.5%), EIS (47.9%), EBL+β-blockers (47.4%), β-blockers (41.8%), EBL (34.5%), and placebo (7.6%). In reducing overall mortality, TIPS SUCRA (81.1%) was superior to EBL+EIS (68.9%), EIS+β-blockers (59.2%), EBL+β-blockers (55.4%), EIS (48.8%), EBL (48.7%), β-blockers (34.2%), placebo (3.6%). Conclusions TIPS was more effective in reducing the incidence of cirrhosis EV rebleeding, rebleeding-related mortality, and overall mortality in cirrhosis. Combined with the above results, TIPS is more likely to be recommended as a secondary prophylaxis intervention for EV in cirrhosis.
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- 2020
33. Identification of a prognostic 28-gene expression signature for gastric cancer with lymphatic metastasis
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Li-wei Jing, Qing-yu Zhang, Zhiting Li, Ziwei Chang, Qiumeng Zhang, Chao Zhang, and Hui Liu
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Male ,0301 basic medicine ,Lymphatic metastasis ,Biophysics ,VEGF-C ,Biology ,Biochemistry ,Disease-Free Survival ,Metastasis ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Stomach Neoplasms ,Gene expression ,Biomarkers, Tumor ,medicine ,Humans ,Molecular Biology ,Gene ,Research Articles ,Proportional Hazards Models ,lymph node metastasis ,Proportional hazards model ,gastric cancer ,COX ,Elastic net ,Cancer ,Cell Biology ,Prognosis ,medicine.disease ,Neoplasm Proteins ,Gene Expression Regulation, Neoplastic ,Vascular endothelial growth factor ,030104 developmental biology ,Lymphatic system ,chemistry ,Lymphatic Metastasis ,030220 oncology & carcinogenesis ,Cancer research ,Female ,Transcriptome ,Research Article - Abstract
Gastric cancer (GC) patients have high mortality due to late-stage diagnosis, which is closely associated with lymph node metastasis. Exploring the molecular mechanisms of lymphatic metastasis may inform the research into early diagnostics of GC. In the present study, we obtained RNA-Seq data from The Cancer Genome Altas and used Limma package to identify differentially expressed genes (DEGs) between lymphatic metastases and non-lymphatic metastases in GC tissues. Then, we used an elastic net-regularized COX proportional hazard model for gene selection from the DEGs and constructed a regression model composed of 28-gene signatures. Furthermore, we assessed the prognostic performance of the 28-gene signature by analyzing the receive operating characteristic curves. In addition, we selected the gene PELI2 amongst 28 genes and assessed the roles of this gene in GC cells. The good prognostic performance of the 28-gene signature was confirmed in the testing set, which was also validated by GSE66229 dataset. In addition, the biological experiments showed that PELI2 could promote the growth and metastasis of GC cells by regulating vascular endothelial growth factor C. Our study indicates that the identified 28-gene signature could be considered as a sensitive predictive tool for lymphatic metastasis in GC.
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- 2019
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34. SnO2/CeO2 nanoparticle-decorated mesoporous ZSM-5 as bifunctional electrocatalyst for HOR and ORR
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Lingxin Peng, Han Tian, Chang Chen, Zhonghua Ma, Jianlin Shi, Xiangzhi Cui, Yafeng Chen, Ziwei Chang, and Ge Meng
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Battery (electricity) ,Materials science ,Hydrogen ,General Chemical Engineering ,Nanoparticle ,chemistry.chemical_element ,02 engineering and technology ,General Chemistry ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Electrocatalyst ,01 natural sciences ,Industrial and Manufacturing Engineering ,0104 chemical sciences ,Catalysis ,chemistry.chemical_compound ,chemistry ,Chemical engineering ,Environmental Chemistry ,ZSM-5 ,0210 nano-technology ,Bifunctional ,Mesoporous material - Abstract
Developing highly efficient noble metal-free electrocatalysts for hydrogen oxidation reaction (HOR) and oxygen reduction reaction (ORR) in alkaline exchange membrane fuel cells (AEMFCs) is of great importance for the large-scale applications, which, however, still remains a great challenge. Here we present the synthesis of SnO2 and CeO2 nanoparticle-decorated mesoporous ZSM-5 (denoted as SnCe-ZSM) via electrostatic interaction, which, surprisingly, not only exhibits excellent catalytic activity towards HOR, but also largely enhance ORR performance. The strong electronic interaction between SnO2 and CeO2 nanoparticles synergistically leads to the electron-enrichment on SnO2 and oxygen vacancy accumulation on CeO2, which respectively enable the hydrogen and oxygen adsorption/activation concurrently, finally resulting in the significant enhancements of the electrocatalytic activity towards both HOR and ORR. Additionally, the SnCe-ZSM based zinc-air battery exhibits a remarkably high power density of 98 mW/cm2 and excellent stability during discharging/charging cyclic tests for 60 h. The SnCe-ZSM electrocatalyst provides a significant paradigm for designing bifunctional composite catalysts for applications in clean energy devices.
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- 2021
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35. Exploring interactions between lipids and amyloid-forming proteins: A review on applying fluorescence and NMR techniques
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Jun Yang, Jing Deng, Ziwei Chang, and Weijing Zhao
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Magnetic Resonance Spectroscopy ,Amyloid ,Chemistry ,Organic Chemistry ,Molecular Conformation ,Amyloidogenic Proteins ,Cell Biology ,Multiple aggregation ,Fibril ,Lipids ,Biochemistry ,Fluorescence ,Amyloid disease ,Membrane ,Solid-state nuclear magnetic resonance ,Atomic resolution ,mental disorders ,Biophysics ,Humans ,Molecular Biology - Abstract
A hallmark of Alzheimer’s, Parkinson’s, and other amyloid diseases is the assembly of amyloid proteins into amyloid aggregates or fibrils. In many cases, the formation and cytotoxicity of amyloid assemblies are associated with their interaction with cell membranes. Despite studied for many years, the characterization of the interaction is challenged for reasons on the multiple aggregation states of amyloid-forming proteins, transient and weak interactions in the complex system. Although several strategies such as computation biology, spectroscopy, and imaging methods have been performed, there is an urgent need to detail the molecular mechanism in different time scales and high resolutions. This review highlighted the recent applications of fluorescence, solution and solid-state NMR in exploring the interactions between amyloid protein and membranes attributing to their advantages of high sensitivity and atomic resolution.
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- 2021
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36. Ru to W electron donation for boosted HER from acidic to alkaline on Ru/WNO sponges
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Yafeng Chen, Han Tian, Chang Chen, Jianlin Shi, Xiangzhi Cui, Ziwei Chang, Lingxin Peng, Ge Meng, and Zhonghua Ma
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Materials science ,Renewable Energy, Sustainability and the Environment ,Kinetics ,Inorganic chemistry ,02 engineering and technology ,Electron ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,Dissociation (chemistry) ,0104 chemical sciences ,Catalysis ,Molecule ,General Materials Science ,Hydrogen evolution ,Leaching (metallurgy) ,Electrical and Electronic Engineering ,0210 nano-technology ,Hydrogen production - Abstract
Developing high-efficiency hydrogen evolution reaction (HER) catalysts is of great interest for the large-scale high-purity hydrogen production, which, unfortunately, is largely blocked by the sluggish kinetics of the electro-chemical dissociation step of water molecules. Herein, a MOF-derived method has been developed to prepare Ru nanoparticles-anchored sponge-like WNO embedded in N-doped carbon layers (Ru@WNO-C). The fabricated catalyst Ru@WNO-C (Ru: 0.9 wt%) shows excellent HER catalytic activity and long-term stability with the overpotentials of 172, 358 and 24 mV at 10 mA/cm2 in 0.5 M H2SO4, 1 M Na2SO4 and 1 M KOH, respectively. More impressively, the overpotentials, especially in neutral medium, decrease markedly during the durability tests owing to the catalyst structure activation after residual Zn species leaching. The enhanced catalytic activity of Ru@WNO-C during operation is mainly attributed to the in-situ electron donation from Ru to W, leading to the easier cleavage of highly polarized H‒OH bond of water molecules and thus endowing Ru@WNO-C with excellent HER catalytic performance in non-acidic solution.
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- 2021
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37. Production of disulfide bond-rich peptides by fusion expression using small transmembrane proteins of Escherichia coli
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Yunqi Ma, Ji-Min Park, Young-Ok Kim, Dong-Geon Kwag, Huayue Li, Bo-Hye Nam, Jang-Su Park, Cheul-Min An, Ming Lu, Seo-Hyun Kim, Ziwei Chang, and Jee H. Jung
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beta-Defensins ,Recombinant Fusion Proteins ,Clinical Biochemistry ,Peptide ,medicine.disease_cause ,Biochemistry ,law.invention ,law ,Escherichia coli ,medicine ,Disulfides ,Protein disulfide-isomerase ,chemistry.chemical_classification ,Escherichia coli Proteins ,Organic Chemistry ,Membrane Proteins ,Periplasmic space ,Fusion protein ,Transmembrane protein ,chemistry ,Cytoplasm ,Periplasm ,Recombinant DNA ,Peptides - Abstract
Recombinant expression in Escherichia coli allows the simple, economical, and effective production of bioactive peptides. On the other hand, the production of native peptides, particularly those rich in disulfide bonds, is a major problem. Previous studies have reported that the use of carrier proteins for fusion expression can result in good peptide yields, but few are folded correctly. In this study, two transmembrane small proteins in E. coli, YoaJ and YkgR, which both orientate with their N-termini in cytoplasm and their C-termini in periplasm, were used for fusion expression. The recombinant production of two peptides, asteropsin A (ASPA) and β-defensin (BD), was induced in the periplasm of E. coli using a selected carrier protein. Both peptides were expressed at high levels, at yields of approximately 5-10 mg/L of culture. Mass spectrometry showed that the resulting peptide had the same molecular weight as their natural forms. After purification, single peaks were observed by reversed phase high-performance liquid chromatography (RP-HPLC), demonstrating the absence of isoforms. Furthermore, cytoplasmically expressed fusion proteins with a carrier at their C-termini did not contain disulfide bonds. This study provides new carrier proteins for fusion expression of disulfide bond-rich peptides in E. coli.
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- 2014
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38. Potential role of HSP90 in mediating the interactions between estrogen receptor (ER) and aryl hydrocarbon receptor (AhR) signaling pathways
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Jang-Su Park, So-Sun Kim, Ziwei Chang, and Ming Lu
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Fish Proteins ,Male ,Estrogen receptor ,Ligands ,Toxicology ,Binding, Competitive ,Vitellogenins ,Cadmium Chloride ,Goldfish ,Heat shock protein ,Cytochrome P-450 CYP1A1 ,Animals ,HSP90 Heat-Shock Proteins ,Receptor ,Transcription factor ,Cells, Cultured ,Dose-Response Relationship, Drug ,Estradiol ,biology ,Receptor Cross-Talk ,General Medicine ,Aryl hydrocarbon receptor ,Polychlorinated Biphenyls ,Hsp90 ,Molecular biology ,Up-Regulation ,Receptors, Aryl Hydrocarbon ,Receptors, Estrogen ,Enzyme Induction ,Hepatocytes ,biology.protein ,Signal transduction ,Water Pollutants, Chemical ,Signal Transduction - Abstract
The estrogen receptor (ER) and aryl hydrocarbon receptor (AhR) are ligand-activated transcription factors involved in estrogen or xenobiotic exposure, whereas the 90-kDa heat shock protein (HSP90), which is a ubiquitously expressed molecular chaperone, is involved in the signal transduction process. Although the interactions between these pathways have been under investigation, the mechanisms are unclear and the potential role of HSP90 in these interactions has not been reported. The results of goldfish primary hepatocytes showed that exposure to PCB77 and 17β-estradiol (E2) alone induced significant protein expression of cytochrome P450 1A (CYP1A) and vitellogenin (VTG), respectively. On the other hand, the combined exposure to PCB77 and E2 led to the reduction of CYP1A and VTG compared to the single treatments. Although the AhRs and ERs were naturally induced during the co-treatment, the total amount of HSP90 binding to the receptors was not changed. Furthermore, while the HSP90 chaperon activity was blocked by the specific inhibitor (geldanamycin), reciprocal inhibition between AhR and ER pathways was not observed. These findings indicate a potential role of HSP90 where competition between AhR and ER for binding to HSP90 can occur and cause reciprocal inhibition.
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- 2014
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39. Histidine (His83) is Essential for Heat Shock Factor 1 (HSF1) Activation in Protecting against Acid pH Stress
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Ming Lu, Ziwei Chang, and Jang-Su Park
- Subjects
Chemistry ,fungi ,Mutant ,General Chemistry ,In vitro ,Residue (chemistry) ,chemistry.chemical_compound ,Biochemistry ,Transcription (biology) ,Heat shock protein ,Biophysics ,Imidazole ,HSF1 ,Histidine - Abstract
The activation of heat shock factor 1 (HSF1) can be induced by the changes in environmental pH, but the mechanism of HSF1 activation by acidification is not completely understood. This paper reports that a low pH (pH~6.0) can trigger human HSF1 activation. Considering the involvement of the imidazole group of histidine residues under acid pH stress, an in vitro EMSA experiment, Trp-fluorescence spectroscopy, and protein structural analysis showed that the residue, His83, is the essential for pH-dependent human HSF1-activation. To determine the roles of His83 in the HSF1-mediated stress response affecting the cellular acid resistance, mouse embryo fibroblasts with normal wild-type or mutant mouse HSF1 expression were preconditioned by heating or pH stress. The results suggest that His83 is essential for HSF1 activation or the HSF1-mediated transcription of heat shock proteins, in protecting cells from acid pH stress.
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- 2013
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40. Estrogenic Response in Male Bullfrog (Rana catesbeiana) Hepatocytes After Single or Combined Exposure to Cadmium (Cd) and 17beta-Estradiol (E2)
- Author
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Ming Lu, Keun Woo Lee, Ziwei Chang, Beom-Seok Oh, and Jang-Su Park
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Male ,medicine.medical_specialty ,Cell Survival ,Health, Toxicology and Mutagenesis ,chemistry.chemical_element ,Endocrine Disruptors ,Biology ,Toxicology ,medicine.disease_cause ,Vitellogenins ,Vitellogenin ,Bullfrog ,Internal medicine ,medicine ,Water environment ,Animals ,chemistry.chemical_classification ,Cadmium ,Reactive oxygen species ,Rana catesbeiana ,Estradiol ,General Medicine ,Pollution ,Endocrinology ,chemistry ,Toxicity ,Hepatocytes ,biology.protein ,Vitellogenesis ,Reactive Oxygen Species ,Water Pollutants, Chemical ,Oxidative stress - Abstract
Contamination by heavy metals and sex hormones in a water environment is an important health issue. In this study, we investigated the estrogenic effects of cadmium (Cd) administration alone and in combination with 17beta-estradiol (E2) on the hepatocytes of male Bullfrog (Rana catesbeiana). Their vitellogenin (VTG) expression and reactive oxygen species (ROS) were analyzed upon exposure to Cd alone or to both Cd and E2. Our results suggest that the VTG levels induced by the co-treatment of 100 nM E2 and 100 nM CdCl2 were significantly higher than those induced by 100 nM E2 alone (p < 0.05), and were comparable to vitellogenin induction observed with 1 μM E2. A similar result was observed by western blot analysis in the culture medium of hepatocytes. Meanwhile, Cd (but not E2) increased the ROS levels. These results suggest that Cd has a cooperative effect with E2 in the induction of VTG, thus acting as an estrogenic disruptor. Cd also causes oxidative stress that occurs with the enhanced vitellogenesis.
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- 2010
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41. Erratum to Expression Procedure Optimization of Carassius aurantus CYP1A in Shewanella Using Plasmid Construction Strategy
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Ming Lu, Ziwei Chang, Hae-Kyun Yoo, Chu Lee, Jang-Su Park, and Yunqi Ma
- Subjects
0301 basic medicine ,Signal peptide ,Cytochrome ,biology ,Chemistry ,Biomedical Engineering ,Bioengineering ,Periplasmic space ,biology.organism_classification ,Applied Microbiology and Biotechnology ,Shewanella ,Yeast ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,Plasmid ,Biochemistry ,biology.protein ,Shewanella oneidensis ,Heme ,Biotechnology - Abstract
Cytochrome P4501A (CYP1A) has attracted an increasing interest due to its important role in metabolism of contaminants in aquatic environment and kinds of biomarkers to monitor the pollutants. CYPs are reported to express in E. coli, yeast and insect cells, while expression levels in these systems are too low to continue further study, such as functional and structural research. In this study, we construct an expression system using Shewanella oneidensis to produce goldfish CYP1A. RBS sequence that can elevate expression level by initiating the translation was added. A leading signal peptide which will direct the goal protein into periplasm of the host was introduced. Moreover, large-size plasmid construction strategy was applied during the successful construction process of expression system. At the position of ~60 kDa, a single band was seen clearly after expression; furthermore the amount of expressed CYP1A was as high as 0.02 micromoles per liter in the culture. Heme test was also performed, the result showed the typical P450 hemoprotein spectra. All these data suggest the possible suitable expression system for fish P4501A system was constructed.
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- 2018
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42. Roles of His101in DNA-Binding Domain of Human Heat Shock Factor 1 Under Acid pH Environment
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Jang-Su Park, Ziwei Chang, Bobae Kwon, Hyeon-Gyeong Park, and Ming Lu
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Biochemistry ,Chemistry ,General Chemistry ,DNA-binding domain ,Heat shock ,HSF1 ,Histidine - Abstract
E-mail: jaspark@pusan.ac.krReceived July 6, 2012, Accepted September 6, 2012Key Words : Human heat shock factor 1, Tryptophan-fluorescence spectroscopy, Acid pH, HistidineThe cellular response to acute and proteotoxic stresses,historically called “heat shock response” (HSR), is stronglyconserved throughout all known organisms.
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- 2012
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43. Identification, tissue distribution and characterization of two heat shock factors (HSFs) in goldfish (Carassius auratus)
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Ziwei Chang, So-Sun Kim, and Jang-Su Park
- Subjects
Gene isoform ,Fish Proteins ,DNA, Complementary ,Molecular Sequence Data ,Aquatic Science ,Transcription (biology) ,Heat shock protein ,Goldfish ,Environmental Chemistry ,Gene family ,Animals ,Amino Acid Sequence ,RNA, Messenger ,Cloning, Molecular ,HSF1 ,Zebrafish ,Heat-Shock Proteins ,Phylogeny ,biology ,Base Sequence ,fungi ,General Medicine ,biology.organism_classification ,Molecular biology ,Recombinant Proteins ,Hsp70 ,Cell biology ,Heat shock factor ,Organ Specificity ,Sequence Alignment - Abstract
Heat shock proteins (HSPs) are synthesized rapidly in response to a variety of physiological or environmental stressors, whereas the transcriptional activation of HSPs is regulated by a family of heat shock factors (HSFs). In vertebrates, multiple HSFs (HSF1-4) have been reported to have different roles in response to a range of stresses. This paper reports the cDNA cloning of two goldfish (Carassius auratus) HSF gene families, HSF1 and three isoforms of HSF2. Both HSF1 and HSF2s showed high homology to the known HSFs from other organisms, particularly the zebrafish. Different patterns of HSF1 and HSF2 mRNA expression were detected in several goldfish tissues, highlighting their distinct roles. In cadmium (Cd)-treated tissues, the responses of HSP70 showed less difference. However, the increase in HSF1 and HSF2 in these tissues differs considerable. In particular, HSF2 was induced strongly in the heart and liver. On the other hand, in heart tissue, HSF1 showed the smallest increment. These results suggest the potential role of HSF2 in assisting HSF1 in these tissues. In another in vitro experiment of hepatocyte cultures, Cd exposure caused similar patterns of goldfish HSF1 and HSF2 mRNA expression and induction of the HSP70 protein. On the other hand, an examination of the characterization of recombinant proteins showed that HSF1 undergoes a conformation change induced by heat shock above 30 °C and approaches each other in the trimer, whereas HSF2 could not sense thermal stress directly. Furthermore, immune-blot analysis of HSFs showed that both monomers and trimmers of HSF1 were observed in cadmium-induced tissues, whereas HSF2 were all in monomeric. These results show that HSF1 and HSF2 play different roles in the transcription of heat shock proteins.
- Published
- 2014
44. Functional expression of Carassius auratus cytochrome P4501A in a novel Shewanella oneidensis expression system and application for the degradation of benzo[a]pyrene
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Ming Lu, Jang-Su Park, Kwang-Jae Shon, and Ziwei Chang
- Subjects
Shewanella ,animal structures ,Cytochrome ,Bioengineering ,Protein Sorting Signals ,medicine.disease_cause ,Applied Microbiology and Biotechnology ,chemistry.chemical_compound ,Goldfish ,medicine ,Benzo(a)pyrene ,Cytochrome P-450 CYP1A1 ,Animals ,Shewanella oneidensis ,Escherichia coli ,Expression vector ,biology ,General Medicine ,Periplasmic space ,biology.organism_classification ,Recombinant Proteins ,chemistry ,Biochemistry ,Metabolic Engineering ,embryonic structures ,Periplasm ,biology.protein ,Pyrene ,Biotechnology - Abstract
Cytochrome P4501A (CYP1A) in fish has attracted an increasing interest because of its important roles in the metabolic activation of certain xenobiotics such as aromatic hydrocarbons. CYPs are reported to be expressed in yeast, insect cells and Escherichia coli , but are critical for high-level expression. Besides, this study found that the purification of recombinant goldfish CYP1A would result in a loss of enzyme activity. Because large quantities of functional CYP1A are required, it is necessary to find a suitable host with high-level expression. In the present study, a novel expression system using Shewanella oneidensis was established successfully for the production of goldfish CYP1A. A signal peptide in the expression vector leads to the high-level expression in the periplasmic space of Shewanella . The recombinant CYP1A in S hewanella reached up to 1 μmol per liter of culture, and showed the typical P450 hemoprotein spectra. An ethoxyresorufin O -deethylase assay revealed the amount of functional proteins in Shewanella to be almost ten times more than those in other expression systems. Furthermore, the CYP1A-mediated degradation of benzo[ a ]pyrene was also observed by 1 H NMR spectroscopy. These results indicate the possible application of periplasmic fractions to obtain sufficient quantities of functional CYP1A for further studies.
- Published
- 2014
45. Molecular characterization of the aryl hydrocarbon receptor (AhR) pathway in goldfish (Carassius auratus) exposure to TCDD: the mRNA and protein levels
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Ziwei Chang, Min-Ji Bae, Kyu-Hyuck Chung, Jang-Su Park, Ming Lu, and Seung Min Oh
- Subjects
Fish Proteins ,Male ,Polychlorinated Dibenzodioxins ,Cytochrome ,Molecular Sequence Data ,Environmental pollution ,Enzyme-Linked Immunosorbent Assay ,Aquatic Science ,Polymerase Chain Reaction ,Goldfish ,Environmental Chemistry ,Animals ,RNA, Messenger ,Gene ,Messenger RNA ,biology ,General Medicine ,Anatomy ,Aryl hydrocarbon receptor ,Biochemistry ,Gene Expression Regulation ,Receptors, Aryl Hydrocarbon ,Polyclonal antibodies ,Organ Specificity ,biology.protein ,Aryl Hydrocarbon Hydroxylases ,Antibody ,Signal transduction ,Injections, Intraperitoneal ,Water Pollutants, Chemical - Abstract
In bony fish or other aquatic vertebrates, the aryl hydrocarbon receptor (AhR) signaling pathway is initiated by exposure to polycyclic (or/and halogenated) aromatic hydrocarbons (PAHs, such as 2,3,7,8-tetrachlorodibenzo-p-dioxin, TCDD), which subsequently induces the up-regulated expression of a series of related genes (such as cytochrome P4501A (CYP1A)). However, a lack of applicable protein reagents hinders our further understanding of the AhR signaling pathway, which focuses only on gene-based investigations. The goldfish (Carassius auratus) is an ideal model for a study of environmental pollution in whole-Asian fresh water. Here, three sensitive and specific polyclonal antisera against goldfish AhR1, AhR2, and CYP1A proteins were developed. These antisera not only bound the in-vitro synthesized target proteins, but recognized the real proteins expressed in goldfish tissues, with minimal cross-reactivity to non-specific proteins. Together with the analysis of semi-quantitative RT-PCR and polyclonal-antibody-based sandwich ELISA, we confirmed that goldfish AhRs differed in the expression (mRNA and protein levels) patterns among test tissues. Importantly, the relative abundance of each AhR mRNA levels from the different tissues showed no obvious consistency with their protein levels. After exposure to TCDD, goldfish AhR2 showed a more sensitivity than AhR1, and stimulated CYP1A expression directly, similar with the other reported fish models. Overall, development of these antibodies in this study will allow valuable and versatile investigations to further understand the AhR signaling pathway, and different expression (mRNA and protein) patterns represent the first step in determining the regulatory mechanisms underlying the TCDD-exposed aquatic environment.
- Published
- 2012
46. Influence of divalent metal ions on E2-induced ER pathway in goldfish (Carassius auratus) hepatocytes
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Ming Lu, Beom-Seok Oh, Jang-Su Park, Keun Woo Lee, Min-Ji Bae, and Ziwei Chang
- Subjects
medicine.medical_specialty ,medicine.drug_class ,Health, Toxicology and Mutagenesis ,Metal ions in aqueous solution ,chemistry.chemical_element ,Estrogen receptor ,medicine.disease_cause ,Vitellogenin ,Vitellogenins ,Internal medicine ,Goldfish ,medicine ,Animals ,HSP70 Heat-Shock Proteins ,chemistry.chemical_classification ,Ions ,Cadmium ,Reactive oxygen species ,biology ,Estradiol ,Public Health, Environmental and Occupational Health ,General Medicine ,Pollution ,Hsp70 ,Endocrinology ,chemistry ,Receptors, Estrogen ,Estrogen ,Biophysics ,biology.protein ,Hepatocytes ,Oxidative stress ,Copper ,Water Pollutants, Chemical - Abstract
Metal ions existing in the environment could influence the estrogen pathway in aquatic animal, but the detailed mechanism is still delusive. We here showed that in male Carassius auratus hepatocytes, copper (Cu) or cadmium (Cd), did not directly induce vitellogenin (VTG) expression. Interestingly, co-exposure with Cd 2+ (or Cu 2+ ) and 17-β-estradiol (E2) greatly increased the VTG level, comparing with single treatment of E2. Meanwhile, Cd 2+ or Cu 2+ (but not E2) triggers HSP70 expression. But, mixture of Cd 2+ or Cu 2+ with E2 did not obviously raise HSP70 level. E2 also had no obvious effect on reactive oxygen species. Co-treatment of Cd 2+ and E2 showed no obvious increase compared to single treatment with Cd 2+ . We further assume that Cd 2+ -involved oxidative stress generates misfolded proteins, resulting in the competition of HSP70 proteins from a heterocomplex (with estrogen receptor). Thus, dissociation of the heterocomplex actives the receptor–ligand binding activity and promotes the E2-induced VTG expression.
- Published
- 2011
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