75 results on '"Zuzana Gazova"'
Search Results
2. MIRRAGGE – Minimum Information Required for Reproducible AGGregation Experiments
- Author
-
Pedro M. Martins, Susanna Navarro, Alexandra Silva, Maria F. Pinto, Zsuzsa Sárkány, Francisco Figueiredo, Pedro José Barbosa Pereira, Francisca Pinheiro, Zuzana Bednarikova, Michał Burdukiewicz, Oxana V. Galzitskaya, Zuzana Gazova, Cláudio M. Gomes, Annalisa Pastore, Louise C. Serpell, Rostislav Skrabana, Vytautas Smirnovas, Mantas Ziaunys, Daniel E. Otzen, Salvador Ventura, and Sandra Macedo-Ribeiro
- Subjects
amyloid ,reproducible data ,protein ,peptide ,phase separation ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Reports on phase separation and amyloid formation for multiple proteins and aggregation-prone peptides are recurrently used to explore the molecular mechanisms associated with several human diseases. The information conveyed by these reports can be used directly in translational investigation, e.g., for the design of better drug screening strategies, or be compiled in databases for benchmarking novel aggregation-predicting algorithms. Given that minute protocol variations determine different outcomes of protein aggregation assays, there is a strong urge for standardized descriptions of the different types of aggregates and the detailed methods used in their production. In an attempt to address this need, we assembled the Minimum Information Required for Reproducible Aggregation Experiments (MIRRAGGE) guidelines, considering first-principles and the established literature on protein self-assembly and aggregation. This consensus information aims to cover the major and subtle determinants of experimental reproducibility while avoiding excessive technical details that are of limited practical interest for non-specialized users. The MIRRAGGE table (template available in Supplementary Information) is useful as a guide for the design of new studies and as a checklist during submission of experimental reports for publication. Full disclosure of relevant information also enables other researchers to reproduce results correctly and facilitates systematic data deposition into curated databases.
- Published
- 2020
- Full Text
- View/download PDF
3. 7-Methoxytacrine-Adamantylamine Heterodimers as Cholinesterase Inhibitors in Alzheimer’s Disease Treatment — Synthesis, Biological Evaluation and Molecular Modeling Studies
- Author
-
Kamil Kuca, Katarina Siposova, Lucie Drtinova, Zuzana Gazova, Ondrej Soukup, Kamil Musilek, Anna Horova, Katarina Spilovska, Jan Korabecny, and Jan Kral
- Subjects
7-MEOTA ,amantadine ,inhibitor ,Alzheimer’s disease ,acetylcholinesterase ,butyrylcholinesterase ,Organic chemistry ,QD241-441 - Abstract
A structural series of 7-MEOTA-adamantylamine thioureas was designed, synthesized and evaluated as inhibitors of human acetylcholinesterase (hAChE) and human butyrylcholinesterase (hBChE). The compounds were prepared based on the multi-target-directed ligand strategy with different linker lengths (n = 2–8) joining the well-known NMDA antagonist adamantine and the hAChE inhibitor 7-methoxytacrine (7-MEOTA). Based on in silico studies, these inhibitors proved dual binding site character capable of simultaneous interaction with the peripheral anionic site (PAS) of hAChE and the catalytic active site (CAS). Clearly, these structural derivatives exhibited very good inhibitory activity towards hBChE resulting in more selective inhibitors of this enzyme. The most potent cholinesterase inhibitor was found to be thiourea analogue 14 (with an IC50 value of 0.47 µM for hAChE and an IC50 value of 0.11 µM for hBChE, respectively). Molecule 14 is a suitable novel lead compound for further evaluation proving that the strategy of dual binding site inhibitors might be a promising direction for development of novel AD drugs.
- Published
- 2013
- Full Text
- View/download PDF
4. Neuroactive Multifunctional Tacrine Congeners with Cholinesterase, Anti-Amyloid Aggregation and Neuroprotective Properties
- Author
-
Maria Kozurkova, Pavol Kristian, Helena Paulikova, Slavka Hamulakova, and Zuzana Gazova
- Subjects
tacrine ,acetylcholinesterase inhibitor ,amyloid aggregation ,Alzheimer’s disease ,Medicine ,Pharmacy and materia medica ,RS1-441 - Abstract
The review summarizes research into the highly relevant topics of cholinesterase and amyloid aggregation inhibitors connected to tacrine congeners, both of which are associated with neurogenerative diseases. Various opinions will be discussed regarding the dual binding site inhibitors which are characterized by increased inhibitor potency against acetylcholin/butyrylcholine esterase and amyloid formation. It is suggested that these compounds can both raise levels of acetylcholine by binding to the active site, and also prevent amyloid aggregation. In connection with this problem, the mono/dual binding of the multifunctional derivatives of tacrine, their mode of action and their neuroprotective activities are reported. The influence of low molecular compounds on protein amyloid aggregation, which might be considered as a potential therapeutic strategy in the treatment of Alzheimer’s disease is also reported. Finally, attention is paid to some physico-chemical factors, such as desolvation energies describing the transfer of the substrate solvated by water, the metal-chelating properties of biometals reacting with amyloid precursor protein, amyloid beta peptide and tau protein.
- Published
- 2011
- Full Text
- View/download PDF
5. Modulation of Insulin Amyloid Fibrillization in Imidazolium-Based Ionic Liquids with Hofmeister Series Anions
- Author
-
Fedunova, Vladimir Vanik, Zuzana Bednarikova, Gabriela Fabriciova, Steven S.-S. Wang, Zuzana Gazova, and Diana
- Subjects
ionic liquids ,amyloid aggregation ,Hofmeister series ,amyloid fibril morphology - Abstract
Amyloid fibrils have immense potential to become the basis of modern biomaterials. The formation of amyloid fibrils in vitro strongly depends on the solvent properties. Ionic liquids (ILs), alternative solvents with tunable properties, have been shown to modulate amyloid fibrillization. In this work, we studied the impact of five ILs with 1-ethyl-3-methylimidazolium cation [EMIM+] and anions of Hofmeisterseries hydrogen sulfate [HSO4−], acetate [AC−], chloride [Cl−], nitrate [NO3−], and tetrafluoroborate [BF4−] on the kinetics of insulin fibrillization and morphology, and the structure of insulin fibrils when applying fluorescence spectroscopy, AFM and ATR-FTIR spectroscopy. We found that the studied ILs were able to speed up the fibrillization process in an anion- and IL-concentration-dependent manner. At an IL concentration of 100 mM, the efficiency of the anions at promoting insulin amyloid fibrillization followed the reverse Hofmeister series, indicating the direct binding of ions with the protein surface. At a concentration of 25 mM, fibrils with different morphologies were formed, yet with similar secondary structure content. Moreover, no correlation with the Hofmeister ranking was detected for kinetics parameters. IL with the kosmotropic strongly hydrated [HSO4−] anion induced the formation of large amyloid fibril clusters, while the other kosmotropic anion [AC−] along with [Cl−] led to the formation of fibrils with similar needle-like morphologies to those formed in the IL-free solvent. The presence of the ILs with the chaotropic anions [NO3−] and [BF4−] resulted in longer laterally associated fibrils. The effect of the selected ILs was driven by a sensitive balance and interplay between specific protein–ion and ion–water interactions and non-specific long-range electrostatic shielding.
- Published
- 2023
- Full Text
- View/download PDF
6. Silica-magnetite nanoparticles: Synthesis, characterization and nucleic acid separation potential
- Author
-
Zuzana Bednarikova, Martina Kubovcikova, Iryna Antal, Andrea Antosova, Miroslav Gancar, Jozef Kovac, Radka Sobotova, Vladimir Girman, Diana Fedunova, Martina Koneracka, Zuzana Gazova, and Vlasta Zavisova
- Subjects
General Physics and Astronomy ,Surfaces and Interfaces ,General Chemistry ,Condensed Matter Physics ,Surfaces, Coatings and Films - Published
- 2023
- Full Text
- View/download PDF
7. Green tea leaf constituents inhibit the formation of lysozyme amyloid aggregates: An effect of mutual interactions
- Author
-
Miroslav Gancar, Elena Kurin, Zuzana Bednarikova, Jozef Marek, Pavel Mucaji, Milan Nagy, and Zuzana Gazova
- Subjects
Structural Biology ,General Medicine ,Molecular Biology ,Biochemistry - Published
- 2023
- Full Text
- View/download PDF
8. The influence of cations on α-lactalbumin amyloid aggregation
- Author
-
Andrea, Antosova, Miroslav, Gancar, Zuzana, Bednarikova, Jozef, Marek, Eva, Bystrenova, and Zuzana, Gazova
- Subjects
Amyloid ,Chlorides ,Cations, Divalent ,Cations ,Lactalbumin ,Humans ,Amyloidogenic Proteins ,Salts ,Amyloidosis - Abstract
There is limited knowledge regarding α-lactalbumin amyloid aggregation and its mechanism. We examined the formation of α-lactalbumin amyloid fibrils (α-LAF) in the presence of cations (Mglt;supgt;2+lt;/supgt;, Calt;supgt;2+lt;/supgt;, Nalt;supgt;+lt;/supgt;, Klt;supgt;+lt;/supgt;, NHlt;subgt;4lt;/subgt;lt;supgt;+lt;/supgt;, and Cslt;supgt;+lt;/supgt;) in the form of chloride salts at two concentrations. We have shown that studied cations affect the conformation of α-lactalbumin, the kinetics of its amyloid formation, morphology, and secondary structure of α-LAF in a different manner. The higher salts concentration significantly accelerated the aggregation process. Both salt concentrations stabilized α-lactalbumin's secondary structure. However, the presence of divalent cations resulted in shorter fibrils with less β-sheet content. Moreover, strongly hydrated Mglt;supgt;2+lt;/supgt; significantly altered α-lactalbumin's tertiary structure, followed by Nalt;supgt;+lt;/supgt;, NHlt;subgt;4lt;/subgt;lt;supgt;+lt;/supgt;, Klt;supgt;+lt;/supgt;, and weakly hydrated Cslt;supgt;+lt;/supgt;. On the other hand, Calt;supgt;2+lt;/supgt;, despite being also strongly hydrated, stabilized the tertiary structure, supposedly due to its high affinity towards α-lactalbumin. Yet, Calt;supgt;2+lt;/supgt; was not able to inhibit α-lactalbumin amyloid aggregation.
- Published
- 2022
9. Atomic force microscopy as an imaging tool to study the bio/nonbio complexes
- Author
-
Francesco Valle, Zuzana Gazova, Eva Bystrenova, and Zuzana Bednarikova
- Subjects
spectroscopy ,Amyloid ,Histology ,Nanostructure ,Materials science ,Nanotechnology ,02 engineering and technology ,Microscopy, Atomic Force ,biomolecules ,Specimen Handling ,Pathology and Forensic Medicine ,Nanomaterials ,03 medical and health sciences ,Microscopy ,Nanobiotechnology ,Nanoscopic scale ,Amyloid fibrils ,030304 developmental biology ,chemistry.chemical_classification ,0303 health sciences ,Nanotubes, Carbon ,Biomolecule ,Resolution (electron density) ,Proteins ,DNA ,021001 nanoscience & nanotechnology ,Lipids ,Nanostructures ,chemistry ,Nanomedicine ,AFM ,0210 nano-technology - Abstract
Atomic force microscopy (AFM) besides X-ray crystallography and electron microscopy is one of the most attractive methods to study bio/nonbio complexes. Information on how biomacromolecules interact with nanomaterials under different environmental conditions has important implications for the practice of nanomedicine and concerning the safety of nanomaterials. These complexes cover a broad range both in terms of stability and composition. AFM offers a wealth of structural and functional data about such assemblies. The variety of samples investigated using AFM in biology includes nanometre-sized proteins, lipids, DNA, amyloid fibrils, as well as larger objects such as cells. Herein we choose to review the significance of AFM to study various biological aspects of selected assemblies. We have focused on the exploitation of AFM operating in the air. The presented AFM research offers a unique and often unexpected insight into the structure and function of the bio/nonbio complexes. LAY DESCRIPTION: Atomic force microscopy (AFM) besides X-ray crystallography and electron microscopy is one of the most attractive methods to study bio/nonbio complexes. Information on how biomacromolecules interact with nanomaterials under different environmental conditions has important implications for the practice of nanomedicine and concerning the safety of nanomaterials. These complexes cover a broad range both in terms of stability and composition. AFM offers a wealth of structural and functional data about such assemblies. The variety of samples investigated using AFM in biology includes nanometre-sized proteins, lipids, DNA, amyloid fibrils, as well as larger objects such as cells. Herein we choose to review the significance of AFM to study various biological aspects of selected assemblies. The presented AFM research offers a unique and often unexpected insight into the structure and function of the bio/nonbio complexes. Nature has set us a perfect example of how to elegantly optimise and fine tune different types of processes. The relatively young field of nanotechnology has studied biological processes and exploited their unique strengths as novel materials. The resulting area of bionanotechnology has adopted interaction schemes presented to us by biology, to provide enhanced selectivity, efficiency or versatility of molecular attachment strategies. Two scenarios of this synergistic scheme are: the conjugation of nanostructures as a tool for research in biological science and the conjugation of biological particles as a tool for nanotechnology. The use of nanotechnologies for medical applications raises high expectations regarding diagnosis, drug delivery, gene therapy, and tissue engineering. There is an increasing number of reports using AFM as a nanodiagnostic tool with patient cells. The use of AFM, in combination with more conventional analytical approaches, could inform decisions related to recommendations for treatments. Applying AFM techniques in nanomedicine is becoming well established. Atomic force microscopy (AFM) is one of the most functional and powerful microscopy technology for studying biological and material samples at the nanoscale. It is advantageous because an atomic force microscope can image three-dimensional topography of very small objects. It also provides various types of surface measurements to the needs of scientists and engineers if combined with other electromagnetic waves. It is powerful because an AFM can generate images at atomic resolution with 10-9 m scale resolution height information, with minimum sample preparation. AFM gives details on how biological molecules, such as nucleic acids, proteins, and amyloid aggregates, interact with nanomaterials under different environmental conditions. Here, we have shown several examples of relevant applications of AFM to study structural, functional and mechanical properties useful for the medicine and concerning the safety of nanomaterials.
- Published
- 2020
- Full Text
- View/download PDF
10. Molecular Details of a Salt Bridge and Its Role in Insulin Fibrillation by NMR and Raman Spectroscopic Analysis
- Author
-
Bhisma N Ratha, Anirban Bhunia, Soumya De, Samuel A. Kotler, Nakul C. Maiti, Zuzana Bednarikova, Zuzana Gazova, Sreyan Raha, and Rajiv K. Kar
- Subjects
Circular dichroism ,Magnetic Resonance Spectroscopy ,Protein Conformation ,medicine.medical_treatment ,Kinetics ,Spectrum Analysis, Raman ,010402 general chemistry ,01 natural sciences ,Molecular dynamics ,symbols.namesake ,Protein structure ,0103 physical sciences ,Materials Chemistry ,medicine ,Insulin ,Amino Acid Sequence ,Physical and Theoretical Chemistry ,Peptide sequence ,010304 chemical physics ,Chemistry ,Circular Dichroism ,Salt bridge (protein and supramolecular) ,0104 chemical sciences ,Surfaces, Coatings and Films ,Biophysics ,symbols ,Salts ,Raman spectroscopy ,human activities - Abstract
Insulin, a simple polypeptide hormone with huge biological importance, has long been known to self-assemble in vitro and form amyloid-like fibrillar aggregates. Utilizing high-resolution NMR, Raman spectroscopy, and computational analysis, we demonstrate that the fluctuation of the carboxyl terminal (C-ter) residues of the insulin B-chain plays a key role in the growth phase of insulin aggregation. By comparing the insulin sourced from bovine, human, and the modified glargine (GI), we observed reduced aggregation propensity in the GI variant, resulting from two additional Arg residues at its C-ter. NMR analysis showed atomic contacts and residue-specific interactions, particularly the salt bridge and H-bond formed among the C-ter residues Arg31B, Lys29B, and Glu4A. These inter-residue interactions were reflected in strong nuclear Overhauser effects among Arg31BδH-Glu4AδH and Lys29BδHs-Glu4AδH in GI, as well as the associated downfield chemical shift of several A-chain amino terminal (N-ter) residues. The two additional Arg residues of GI, Arg31B and Arg32B, enhanced the stability of the GI native structure by strengthening the Arg31B, Lys29B, and Glu4A salt bridge, thus reducing extensive thermal distortion and fluctuation of the terminal residues. The high stability of the salt bridge retards tertiary collapse, a crucial biochemical event for oligomerization and subsequent fibril formation. Circular dichroism and Raman spectroscopic measurement also suggest slow structural distortion in the early phase of the aggregation of GI because of the restricted mobility of the C-ter residues as explained by NMR. In addition, the structural and dynamic parameters derived from molecular dynamics simulations of insulin variants highlight the role of residue-specific contacts in aggregation and amyloid-like fibril formation.
- Published
- 2020
- Full Text
- View/download PDF
11. Effect of 1-Ethyl-3-methylimidazolium Tetrafluoroborate and Acetate Ionic Liquids on Stability and Amyloid Aggregation of Lysozyme
- Author
-
Diana Fedunova, Andrea Antosova, Jozef Marek, Vladimir Vanik, Erna Demjen, Zuzana Bednarikova, and Zuzana Gazova
- Subjects
Models, Molecular ,Amyloid ,amyloid aggregation ,Protein Conformation ,QH301-705.5 ,Amyloidogenic Proteins ,macromolecular substances ,Acetates ,Catalysis ,Article ,Inorganic Chemistry ,ionic liquids ,Protein Aggregates ,Physical and Theoretical Chemistry ,Biology (General) ,Molecular Biology ,QD1-999 ,Spectroscopy ,protein stability ,amyloid fibril polymorphism ,Organic Chemistry ,Imidazoles ,Temperature ,General Medicine ,Computer Science Applications ,Kinetics ,Chemistry ,Solvents ,Thermodynamics ,Muramidase ,Hydrophobic and Hydrophilic Interactions - Abstract
Amyloid fibrils draw attention as potential novel biomaterials due to their high stability, strength, elasticity or resistance against degradation. Therefore, the controlled and fast fibrillization process is of great interest, which raises the demand for effective tools capable of regulating amyloid fibrillization. Ionic liquids (ILs) were identified as effective modulators of amyloid aggregation. The present work is focused on the study of the effect of 1-ethyl-3-methyl imidazolium-based ILs with kosmotropic anion acetate (EMIM-ac) and chaotropic cation tetrafluoroborate (EMIM-BF4) on the kinetics of lysozyme amyloid aggregation and morphology of formed fibrils using fluorescence and CD spectroscopy, differential scanning calorimetry, AFM with statistical image analysis and docking calculations. We have found that both ILs decrease the thermal stability of lysozyme and significantly accelerate amyloid fibrillization in a dose-dependent manner at concentrations of 0.5%, 1% and 5% (v/v) in conditions and time-frames when no fibrils are formed in ILs-free solvent. The effect of EMIM-BF4 is more prominent than EMIM-ac due to the different specific interactions of the anionic part with the protein surface. Although both ILs induced formation of amyloid fibrils with typical needle-like morphology, a higher variability of fibril morphology consisting of a different number of intertwining protofilaments was identified for EMIM-BF4.
- Published
- 2022
- Full Text
- View/download PDF
12. Surface tension and intrinsic amyloid fluorescence of serum and cerebrospinal fluid samples in Alzheimer´s disease
- Author
-
Zuzana Bednarikova, Zdenka Kristofikova, Zuzana Gazova, Jan Klaschka, and Ales Bartos
- Subjects
Adult ,Male ,Amyloid ,Clinical Biochemistry ,030204 cardiovascular system & hematology ,Fluorescence ,Surface tension ,03 medical and health sciences ,0302 clinical medicine ,Cerebrospinal fluid ,Pulmonary surfactant ,Alzheimer Disease ,Drug Discovery ,Humans ,Surface Tension ,Medicine ,Diagnostic biomarker ,Aged ,business.industry ,Biochemistry (medical) ,Prognosis ,Fluorescence intensity ,Case-Control Studies ,030220 oncology & carcinogenesis ,Biophysics ,Biomarker (medicine) ,Female ,business ,Biomarkers ,Follow-Up Studies - Abstract
Aim: Surface tension of biological fluids can be influenced by changes in oligomerization or aggregation of surfactant peptides or proteins. Amphiphilic peptides of amyloid-β or other amyloidogenic peptides/proteins display properties of surfactants, oligomerization and aggregation increase also their fluorescence intensity compared with native structures. Results/methodology: We estimated surface tension and native/ThioflavinT-based/intrinsic amyloid fluorescence intensity in serum and cerebrospinal fluid samples for their evalution as diagnostic biomarkers for Alzheimer´s disease (AD). Discussion/conclusion: Our results indicate that values of surface tension are not a suitable biomarker for AD. However, the ratio of ThioflavinT-based fluorescence to intrinsic amyloid fluorescence in cerebrospinal fluid appears to be an acceptable supportive diagnostic biomarker for AD (its sensitivity was 61.1%, and the specificity 70.8% when compared with aged controls).
- Published
- 2019
- Full Text
- View/download PDF
13. Destroying activity of glycine coated magnetic nanoparticles on lysozyme, α-lactalbumin, insulin and α-crystallin amyloid fibrils
- Author
-
Andrea Antosova, Zuzana Bednarikova, Iryna Antal, Josephine W. Wu, Martina Koneracka, Zuzana Gazova, Martina Kubovcikova, Vlasta Zavisova, and Steven S.-S. Wang
- Subjects
010302 applied physics ,Lactalbumin ,Amyloid ,Chemistry ,02 engineering and technology ,Protein aggregation ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,01 natural sciences ,Electronic, Optical and Magnetic Materials ,chemistry.chemical_compound ,Amyloid disease ,Isoelectric point ,Crystallin ,0103 physical sciences ,Glycine ,Biophysics ,Lysozyme ,0210 nano-technology - Abstract
A great variety of human protein deposition and protein aggregation diseases (Alzheimer’s disease, diabetes mellitus, cataract, systemic amyloidosis and other) have been associated with the accumulation of amyloid fibrils in different tissues. Therefore, development of the agents able to reduce amyloid deposits represents an attractive strategy for their treatment. We have investigated ability of glycine coated magnetic nanoparticles (Gly-MNPs) to destroy protein amyloid fibrils. The properties of Gly-MNPs were characterized with the aim to identify the optimized conditions for the glycine adsorption on surface of MNPs. It was found that Gly-MNPs have superparamagnetic behavior and their size, isoelectric point and stability depend on the amount of the glycine in the samples. The obtained results suggest that optimal weight ratio (w/w) for the modification of MNPs by glycine (Gly/Fe3O4) is equal to 5/1. The selected Gly5-MNPs1 were used for the study of their effect on amyloid fibrils of four globular proteins, namely lysozyme, bovine α-lactalbumin, insulin and α-crystallin. It was found that Gly5-MNPs1 destroy lysozyme, α-lactalbumin and insulin amyloid fibrils in concentration dependence manner. However, Gly5-MNPs1 were not able significantly destroy bovine α-crystallin amyloid fibrils. We assume that obtained results represent important contribution for rational design of potential therapeutics of amyloid diseases based on nanoparticles.
- Published
- 2019
- Full Text
- View/download PDF
14. Examining the effects of dextran-based polymer-coated nanoparticles on amyloid fibrillogenesis of human insulin
- Author
-
Ning-Hui Lu, Diana Fedunova, Shen-Long Tsai, Zuzana Bednarikova, Josephine W. Wu, Zuzana Gazova, Steven S.-S. Wang, Su-Chun How, and Chien-Yu Lin
- Subjects
0301 basic medicine ,Amyloid ,Biocompatibility ,Static Electricity ,02 engineering and technology ,Protein aggregation ,Protein Structure, Secondary ,Protein Aggregates ,03 medical and health sciences ,chemistry.chemical_compound ,Amyloid disease ,Colloid and Surface Chemistry ,Coated Materials, Biocompatible ,medicine ,Humans ,Insulin ,Benzothiazoles ,Physical and Theoretical Chemistry ,Chemistry ,Circular Dichroism ,Amyloidosis ,Dextrans ,Fibrillogenesis ,Surfaces and Interfaces ,General Medicine ,021001 nanoscience & nanotechnology ,medicine.disease ,Dynamic Light Scattering ,Protein Structure, Tertiary ,Spectrometry, Fluorescence ,030104 developmental biology ,Dextran ,Drug delivery ,Biophysics ,Nanoparticles ,0210 nano-technology ,Biotechnology - Abstract
More than thirty human proteins and/or peptides can aggregate to form amyloid deposits that are linked to several amyloid diseases including clinical syndrome injection-localized amyloidosis, which is correlated with the aggregation of the 51-residue polypeptide insulin. While no cure is currently available toward tackling amyloid diseases, prevention or suppression of amyloid fibrillization is considered as the primary therapeutic strategy. Nanomaterials have been demonstrated to possess great potential in the fields of biomedical diagnosis and drug delivery, they are also able to affect the amyloid aggregation of proteins. This work explores the effects of three different magnetic nanoparticles coated with dextran-based polymers on the in vitro amyloid fibrillogenesis of human insulin. Surface modification of nanoparticles with dextran-based polymers was used to improve the biocompatibility of maghemite nanoparticles. We demonstrated that insulin fibrillization may be mitigated by the studied nanoparticles in a concentration-dependent fashion as verified by ThT binding assay and transmission electron microscopy. The extent of inhibitory activity against human insulin fibril formation was found to be associated with the physico-chemical properties of nanoparticles, with the highest inhibitory activity observed for diethylaminoethyl-dextran-coated nanoparticles. Using circular dichroism spectroscopy, ANS fluorescence spectroscopy, and right-angle light scattering, we probed the structural/conformational changes and investigated the aggregating behavior of insulin upon treatment with nanoparticles. This work demonstrates that nanoparticles with an appropriate surface modification can be utilized to suppress or even inhibit amyloid fibril formation of proteins.
- Published
- 2018
- Full Text
- View/download PDF
15. Tacrine - Benzothiazoles: Novel class of potential multitarget anti-Alzheimeŕs drugs dealing with cholinergic, amyloid and mitochondrial systems
- Author
-
Jana Janockova, Jana Kubackova, Karel Vales, Petr Jost, João Pina, Zuzana Bednarikova, Jan Korabecny, Katarina Motykova, Eugenie Nepovimova, Luísa Cortes, Zofia Chrienova, Kamil Musilek, Carlos Serpa, Rafael Dolezal, Lucie Svobodova, Lucie Junova, Laura Aitken, Vendula Hepnarova, Martin Vališ, Katarina Chalupova, Ondrej Soukup, Danijela Rostohar, Marketa Chvojkova, Daniel Jun, Lubica Muckova, Catarina S. H. Jesus, Zuzana Gazova, Kamil Kuca, Rebecca E. Hughes, and Tomas Kucera
- Subjects
Amyloid ,Cholinergic Agents ,Pharmacology ,01 natural sciences ,Biochemistry ,chemistry.chemical_compound ,Protein Aggregates ,Structure-Activity Relationship ,In vivo ,Alzheimer Disease ,Drug Discovery ,medicine ,Humans ,Benzothiazoles ,Enzyme Inhibitors ,Molecular Biology ,IC50 ,Amyloid beta-Peptides ,Dose-Response Relationship, Drug ,Molecular Structure ,010405 organic chemistry ,Organic Chemistry ,3-Hydroxyacyl CoA Dehydrogenases ,Acetylcholinesterase ,In vitro ,0104 chemical sciences ,Mitochondria ,010404 medicinal & biomolecular chemistry ,Neuroprotective Agents ,Benzothiazole ,chemistry ,Tacrine ,Cholinergic ,medicine.drug - Abstract
A series of tacrine – benzothiazole hybrids incorporate inhibitors of acetylcholinesterase (AChE), amyloid β (Aβ) aggregation and mitochondrial enzyme ABAD, whose interaction with Aβ leads to mitochondrial dysfunction, into a single molecule. In vitro, several of 25 final compounds exerted excellent anti-AChE properties and interesting capabilities to block Aβ aggregation. The best derivative of the series could be considered 10w that was found to be highly potent and selective towards AChE with the IC50 value in nanomolar range. Moreover, the same drug candidate exerted absolutely the best results of the series against ABAD, decreasing its activity by 23% at 100 µM concentration. Regarding the cytotoxicity profile of highlighted compound, it roughly matched that of its parent compound – 6-chlorotacrine. Finally, 10w was forwarded for in vivo scopolamine-induced amnesia experiment consisting of Morris Water Maze test, where it demonstrated mild procognitive effect. Taking into account all in vitro and in vivo data, highlighted derivative 10w could be considered as the lead structure worthy of further investigation.
- Published
- 2020
16. Inhibition behavior of Sennoside A and Sennoside C on amyloid fibrillation of human lysozyme and its possible mechanism
- Author
-
Huijun Dong, Hans-Christian Siebert, Zuzana Bednarikova, Zuzana Gazova, Li Jin, Ruiyan Zhang, Anirban Bhunia, Wen Gao, Ning Zhang, and Chunhong Liu
- Subjects
Amyloid ,Sennosides ,02 engineering and technology ,Biochemistry ,Hydrophobic effect ,03 medical and health sciences ,chemistry.chemical_compound ,Protein Aggregates ,Structural Biology ,medicine ,Humans ,Molecular Biology ,IC50 ,030304 developmental biology ,Fibrillation ,0303 health sciences ,Hydrogen bond ,Senna Extract ,General Medicine ,Sennoside C ,021001 nanoscience & nanotechnology ,Congo red ,chemistry ,Biophysics ,Muramidase ,medicine.symptom ,Lysozyme ,0210 nano-technology - Abstract
Amyloid proteins were recognized as the crucial cause of many senile diseases. In this study, the inhibitory effects of Sennoside A (SA) and Sennoside C (SC) on amyloid fibrillation were evaluated by the combination of biophysical approaches and molecular docking tool using human lysozyme (HL) as amyloid-forming model. The results of thioflavin-T (ThT), 8-anilino-1-naphthalenesulfonic acid (ANS) and congo red (CR) assays indicated that both SA and SC could inhibit the amyloid fibrillation of HL in a dose-dependent manner. The IC50 value of SA and SC on HL fibrillation was 200.09 μM and 186.20 μM, respectively. These findings were further verified by transmission electron microscopy (TEM) and atomic force microscopy (AFM), which showed that the addition of SA or SC could sharply reduce the amyloid fibrillation of HL. Additionally, the interactions of HL with SA and SC were investigated by steady-state fluorescence spectra and molecular docking studies. The results suggested that both SA and SC could bind to the binding pocket of HL and form a stable complex mainly via hydrogen bonds, van-der-Waals forces and hydrophobic interactions. In conclusion, our experiments revealed that both SA and SC can significantly inhibit amyloid fibrillation of HL.
- Published
- 2020
17. Extracts from Chinese herbs with anti-amyloid and neuroprotective activities
- Author
-
Yun Tang, Zuzana Bednarikova, Miroslav Gancar, Lei Ma, Yating Luo, Zuzana Gazova, Lu-Lu Zheng, Barbora Spodniakova, Rui Wang, and Yan Huang
- Subjects
Carbamate ,China ,Amyloid ,Stereochemistry ,medicine.medical_treatment ,Peptide ,Salvia miltiorrhiza ,02 engineering and technology ,Fibril ,Biochemistry ,Neuroprotection ,Cell Line ,03 medical and health sciences ,chemistry.chemical_compound ,Structural Biology ,Alzheimer Disease ,medicine ,Spirostans ,Moiety ,Humans ,Molecular Biology ,030304 developmental biology ,Benzofurans ,chemistry.chemical_classification ,0303 health sciences ,Anemarrhena ,Amyloid beta-Peptides ,Plant Extracts ,General Medicine ,Sarsasapogenin ,021001 nanoscience & nanotechnology ,Peptide Fragments ,Neuroprotective Agents ,chemistry ,Abietanes ,0210 nano-technology - Abstract
Many Chinese herbs are well known for their neuroprotective and anti-oxidant properties. Extracts of Salvia miltiorrhiza and Anemarrhenae asphodeloides, tanshinone IIA (tanIIA), salvianolic acid B (Sal B) and sarsasapogenin (ML-1), were selected to study their dissociation potential towards Aβ42 peptide fibrils and neuroprotective effect on cells. Moreover, derivatives of sarsasapogenin (ML-2, ML-3 and ML-4) have been prepared by the addition of modified carbamate moiety. TanIIA and Sal B have shown to possess a strong ability to dissociate Aβ42 fibrils. The dissociation potential of ML-1 increased upon the introduction of carbamate moiety with N-heterocycles. In silico data revealed that derivatives ML-4 and Sal B interact with Aβ42 regions responsible for fibril stabilization through hydrogen bonds. Contrary, tanIIA binds close to a central hydrophobic region, which may lead to destabilization of fibrils. Sarsasapogenin derivative ML-2 decreased nitride oxide production, and derivative ML-4 enhanced the growth of neurites. The reported data highlight the possibility of using active compounds to design novel treatment agents for Alzheimer's disease.
- Published
- 2020
18. Destabilization effect of imidazolium cation-Hofmeister anion salts on cytochrome c
- Author
-
Katarína Garajová, Martin Berta, Erik Sedlák, Dagmar Sedláková, and Zuzana Gazova
- Subjects
Anions ,Protein Denaturation ,Sodium ,Iodide ,chemistry.chemical_element ,Salt (chemistry) ,Ionic Liquids ,02 engineering and technology ,Biochemistry ,Medicinal chemistry ,Hydrophobic effect ,03 medical and health sciences ,chemistry.chemical_compound ,Structural Biology ,Bromide ,Cations ,Surface Tension ,Molecular Biology ,030304 developmental biology ,chemistry.chemical_classification ,0303 health sciences ,Thiocyanate ,Protein Stability ,Imidazoles ,Cytochromes c ,General Medicine ,Hydrogen-Ion Concentration ,021001 nanoscience & nanotechnology ,Solvent ,chemistry ,Ionic liquid ,Salts ,0210 nano-technology ,Hydrophobic and Hydrophilic Interactions - Abstract
We have analyzed an effect of imidazolium cation-Hofmeister anion salts on stability of basic horse heart cytochrome c (cyt c) at pH4.5 (net charge +17). The effect of salts consisting of imidazolium cations, 1-ethyl-3-methylimidazolium (EMIm+) and 1-butyl-3-methylimidazolium (BMIm+), and five anions: chloride, bromide, iodide, nitrate, and thiocyanate on thermal and pH stability of cyt c was compared with the effect of corresponding sodium salts. Correlation between parameter of dTtrs/d [ion] (Ttrs; thermal midpoints) with surface tension changes of solvent in the presence of both imidazolium and sodium salts implies direct interaction between ions and proteins. Surprisingly, the imidazolium salts have more pronounced destabilization effect on highly positively charged cyt c than the corresponding sodium counterparts. Our analysis suggests the direct interaction of imidazolium cations with polypeptide chain, in analogy to guanidium cation, but the destabilization effect is significantly strengthened by decreased surface tension of imidazolium salt solvents. Comparison of an effect of imidazolium and sodium salts on acidic and alkaline transitions and to thermal transition of cyt c implies a role of hydrophobic interaction between imidazolium cation and polypeptide chain.
- Published
- 2020
19. Amyloid Aggregation of Insulin: An Interaction Study of Green Tea Constituents
- Author
-
Pavel Mučaji, Zuzana Bednarikova, Elena Kurin, Jozef Marek, Zuzana Gazova, Miroslav Gancar, and Milan Nagy
- Subjects
0301 basic medicine ,Amyloid ,medicine.medical_treatment ,Biophysics ,lcsh:Medicine ,01 natural sciences ,complex mixtures ,Article ,Catechin ,Protein Structure, Secondary ,03 medical and health sciences ,chemistry.chemical_compound ,Protein Aggregates ,Protein structure ,Caffeine ,Gallic Acid ,medicine ,Humans ,Insulin ,Gallic acid ,Binding site ,lcsh:Science ,Multidisciplinary ,Binding Sites ,Tea ,010405 organic chemistry ,Chemistry ,lcsh:R ,food and beverages ,Biological activity ,Chemical biology ,In vitro ,0104 chemical sciences ,Molecular Docking Simulation ,Kinetics ,030104 developmental biology ,Biochemistry ,lcsh:Q - Abstract
Exogenous insulin, used as a therapeutic agent for diabetes, forms insoluble deposits containing amyloid fibrillar structures near the administration site. We have analyzed the in vitro anti-amyloid activity of four green tea constituents: (-)-epigallocatechin gallate (EGCG), (-)-epicatechin (EC), gallic acid (GA), caffeine (CF), and their equimolar mixtures. Regarding individually tested compounds, only EGCG inhibited the fibrillization process. The individual EC, GA, and CF molecules were ineffective. The presence of EGCG in equimolar combinations with GA, EC, or CF was required for the inhibitory activity of most mixtures. Molecular docking revealed that EGCG interacts with an essential amyloidogenic region of insulin chain B. Individually inactive GA had a potentiating effect on the activity of EGCG. In contrast, EC and CF had a negative impact on the activity of the mixtures. We have observed diverse morphology and the amount of insulin amyloid aggregates formed in the presence of studied compounds. The distinct types of amyloid aggregates created in vitro in the presence of EGCG and other green tea constituents were characterized. Results indicate that the biological activity of individual molecules is not directly applicable to the pooled samples effects prediction.
- Published
- 2020
20. 7-Methoxytacrine and 2-Aminobenzothiazole Heterodimers: Structure-Mechanism Relationship of Amyloid Inhibitors Based on Rational Design
- Author
-
Mai Suan Li, Anirban Bhunia, Zuzana Gazova, Miroslav Gancar, Sk. Abdul Mohid, H Linh Nguyen, Kiet Ho, Eugenie Nepovimova, Zuzana Bednarikova, and Nguyen Quoc Thai
- Subjects
Amyloid ,Physiology ,Cognitive Neuroscience ,Amyloidogenic Proteins ,Protein aggregation ,Biochemistry ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,medicine ,Humans ,Prospective Studies ,030304 developmental biology ,0303 health sciences ,Amyloidosis ,Rational design ,Cell Biology ,General Medicine ,medicine.disease ,Small molecule ,In vitro ,chemistry ,Biophysics ,Tacrine ,Lysozyme ,Linker ,030217 neurology & neurosurgery - Abstract
The formation and accumulation of amyloid aggregates are the phenomena that accompany amyloidoses, which are currently untreatable and include Alzheimer's and Parkinson's diseases, diabetes mellitus, non-neuropathic lysozyme systemic amyloidosis, and others. One of the very promising therapeutic approaches seems to be an inhibition of amyloid formation and/or clearance of amyloid aggregates. Small molecules have a great potential to interfere with amyloid fibrillation of peptides and polypeptides, which can be improved by connection of cyclic structures into single multicyclic molecules and their dimerization. In our study, we focused on heterodimers consisting of 7-methoxytacrine (7-MEOTA) and 2-aminobenzothiazole (BTZ) parent molecules connected by an aliphatic linker. Using in vitro and in silico methods, we investigated the ability of studied compounds to inhibit the amyloid aggregation of hen egg white lysozyme. Heterodimerization led to significant improvement of inhibitory activity compared to that of the parent molecules. The efficiency of the heterodimers varied; the most effective inhibitor contained the longest linker, eight carbons long. We suggest that binding of a heterodimer to a lysozyme blocks the interaction between the β-domain and C-helix region essential for the formation of amyloid cross-β structure. Elongation of the linker ultimately enhances the compound's ability to prevent this interaction by allowing the BTZ part of the heterodimer to bind more effectively, increasing the compound's binding affinity, and also by greater steric obstruction. This study represents an important contribution to the recent rational design of potential lead small molecules with anti-amyloid properties, and the heterodimers studied are prospective candidates for the treatment of systemic lysozyme amyloidosis and other amyloid-related diseases.
- Published
- 2020
21. Effect of metallic nanoparticles on amyloid fibrils and their influence to neural cell toxicity
- Author
-
Zuzana Bednarikova, Andrea Antosova, Cristiano Albonetti, Marianna Barbalinardo, Paola Sassi, Eva Bystrenova, Zuzana Gazova, Francesco Valle, Loredana Latterini, and Marta Gambucci
- Subjects
Circular dichroism ,spectroscopy ,Amyloid ,Nanoparticle ,02 engineering and technology ,Protein aggregation ,010402 general chemistry ,Fibril ,01 natural sciences ,Nanomaterials ,chemistry.chemical_compound ,amyloid fibrils ,General Materials Science ,Electrical and Electronic Engineering ,Cytotoxicity ,lysozyme ,toxicity ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,Atomic and Molecular Physics, and Optics ,0104 chemical sciences ,chemistry ,Biophysics ,nanoparticles ,Lysozyme ,Amyloid | Amyloidogenic Protein | Fibrillation ,0210 nano-technology - Abstract
The modification of amyloid fibrils cytotoxicity through exogenous nanomaterials is crucial to understand the processes controlling the role of protein aggregation in the related diseases. The influence of nanoparticles on amyloid stability yields great interest due to the small size and high surface area-to-volume ratio of nanoparticles. Various physico-chemical parameters play a role in the interaction of proteins and nanoparticles in solution, thus influencing the disaggregation of preformed fibrils. We have examined the influence of two kinds of metallic nanoparticles on lysozyme amyloid fibrils using a multi-technique approach and focalized their impact on cytotoxicity on human neuroblastoma cells (SH-SY5Y). In particular, fluorescence, infrared and circular dichroism spectroscopies, optical and atomic force microscopy experiments have been carried out; the results are analyzed to rationalize the effects of these complexes on neural cell viability. It is remarkable, that the fibrils in the presence of AuNPs, unlike fibrils alone or with AgNPs, do not generate a significant cytotoxic effect even at high concentration and an amyloid degradation effect is visible.
- Published
- 2020
- Full Text
- View/download PDF
22. Exploring the effects of methylene blue on amyloid fibrillogenesis of lysozyme
- Author
-
Josephine W. Wu, Su Chun How, Zuzana Bednarikova, Steven S.-S. Wang, Andrea Antosova, Ta Hsien Lin, Jinn Tsyy Lai, Zuzana Gazova, Yu-Hong Cheng, and Chun Hsien Lo
- Subjects
0301 basic medicine ,Amyloid ,Molecular Conformation ,02 engineering and technology ,Molecular Dynamics Simulation ,Fibril ,Protein Aggregation, Pathological ,Biochemistry ,Protein Aggregates ,Structure-Activity Relationship ,03 medical and health sciences ,chemistry.chemical_compound ,Structural Biology ,Molecular Biology ,Spectrum Analysis ,Fibrillogenesis ,Amyloidosis ,General Medicine ,021001 nanoscience & nanotechnology ,Fluorescence ,Small molecule ,In vitro ,Methylene Blue ,Molecular Docking Simulation ,030104 developmental biology ,chemistry ,Biophysics ,Muramidase ,Lysozyme ,0210 nano-technology ,Methylene blue ,Protein Binding - Abstract
The 129-residue lysozyme has been shown to form amyloid fibrils in vitro. While methylene blue (MB), a compound in the phenothiazinium family, has been shown to dissemble tau fibril formation, its anti-fibrillogenic effect has not been thoroughly characterized in other proteins/peptides. This study examines the effects of MB on the in vitro fibrillogenesis of lysozyme at pH 2.0 and 55 °C. Our results demonstrated that, upon 7-day incubation, the plateau ThT fluorescence of the sample was found to be ~8.69% or ~2.98% of the control when the molar ratio of lysozyme to MB was at 1:1.11 or 1:3.33, respectively, indicating that the inhibitory potency of MB against lysozyme fibrillogenesis is positively correlated with its concentration. We also found that MB is able to destabilize the preformed lysozyme fibrils. Moreover, molecular docking and molecular dynamics simulations results revealed that MB's mechanism of fibril formation inhibition may be triggered by binding with lysozyme's aggregation-prone region. Results reported here provide solid support for MB's effect on amyloid fibrillogenesis. We believe the additional insights gained herein may pave way to the discovery of other small molecules that may have similar action toward amyloid fibril formation and its associated diseases.
- Published
- 2018
- Full Text
- View/download PDF
23. Compound CID 9998128 Is a Potential Multitarget Drug for Alzheimer’s Disease
- Author
-
Mai Suan Li, Huynh Quang Linh, Zuzana Bednarikova, Zuzana Gazova, Chin-Kun Hu, Miroslav Gancar, and Nguyen Quoc Thai
- Subjects
0301 basic medicine ,Amyloid ,Indazoles ,Pyridines ,Physiology ,Cognitive Neuroscience ,In Vitro Techniques ,Molecular Dynamics Simulation ,Protein aggregation ,010402 general chemistry ,Fibril ,01 natural sciences ,Biochemistry ,Molecular mechanics ,03 medical and health sciences ,chemistry.chemical_compound ,Alzheimer Disease ,Amyloid precursor protein ,Humans ,Computer Simulation ,Indazole ,Amyloid beta-Peptides ,biology ,Cell Biology ,General Medicine ,Small molecule ,Peptide Fragments ,In vitro ,0104 chemical sciences ,030104 developmental biology ,chemistry ,Quinazolines ,Biophysics ,biology.protein ,Amyloid Precursor Protein Secretases - Abstract
We have probed small molecule compound CID 9998128 as a potential multitarget drug for the Alzheimer’s disease (AD) using in silico and in vitro experiments. By all-atom simulation and molecular mechanics Poisson–Boltzmann surface area (MM-PBSA) method, we have demonstrated that this compound strongly binds to both amyloid β42 (Aβ42) fibrils and β-secretase, and the van der Waals interaction dominates over the electrostatic interaction in binding affinity. A detailed analysis at the atomic level revealed that indazole in CID 99998128 structure made a major contribution to instability of all studied complexes. In vitro experiments have shown that CID 9998128 inhibits the Aβ42 amyloid fibrillization and is capable to clear Aβ42 fibrils. Moreover, the compound dose-dependently decreases β-site amyloid precursor protein cleaving enzyme (BACE-1) activity with EC50 value in micromolar range. Thus, our study has revealed that CID 9998128 is a good candidate for AD treatment through preventing production of Aβ pe...
- Published
- 2018
- Full Text
- View/download PDF
24. Bexarotene cannot reduce amyloid beta plaques through inhibition of production of amyloid beta peptides:in silicoandin vitrostudy
- Author
-
Zuzana Bednarikova, Mai Suan Suan Li, Huynh Quang Linh, Zuzana Gazova, Huy Dinh Quoc Pham, and Nguyen Quoc Thai
- Subjects
Models, Molecular ,0301 basic medicine ,Amyloid ,Protein Conformation ,Amyloid beta ,General Physics and Astronomy ,Plaque, Amyloid ,Plasma protein binding ,Molecular Dynamics Simulation ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Amyloid precursor protein ,Humans ,Computer Simulation ,Physical and Theoretical Chemistry ,Receptor ,Bexarotene ,Amyloid beta-Peptides ,biology ,Chemistry ,In vitro ,Cell biology ,Molecular Docking Simulation ,PPAR gamma ,Retinoid X Receptors ,030104 developmental biology ,biology.protein ,Amyloid Precursor Protein Secretases ,030217 neurology & neurosurgery ,Intracellular ,Protein Binding ,medicine.drug - Abstract
Recently, it has been reported that anti-cancer drug bexarotene can remarkably destroy amyloid beta (Aβ) plaques in mouse models suggesting therapeutic potential for Alzheimer's disease. However, the effect of bexarotene on clearance of plaques has not been seen in some mouse models. One of the possible mechanisms explaining this phenomenon is that bexarotene levels up expression of apolipoprotein 4 (ApoE4) leading to intracellular clearance of Aβ peptide. Therefore, an interesting question emerges of whether bexarotene can destroy Aβ plaques by direct interaction with them or by preventing production of Aβ peptides. In our previous work we have shown that bexarotene cannot clear amyloid aggregates due to their weak interaction using in silico and in vitro experiments. Here we explore the possibility of inhibiting Aβ production through bexarotene binding to β-secretase which can cleave Aβ peptides from amyloid precursor protein. Using the molecular mechanics-Poisson-Boltzmann surface area method and all-atom simulations we have shown that bexarotene has a very low binding affinity to β-secretase. This result has been also confirmed by our in vitro experiment implying that bexarotene cannot clear amyloid plaques through inhibition of Aβ production. We have also shown that bexarotene tightly binds to both peroxisome proliferator-activated receptor γ (PPAR-γ) and retinoid X receptors (RXRs). Thus, our result does not contradict the hypothesis that the reduction of Aβ plaques occurs due to bexarotene-induced overexpression of ApoE4.
- Published
- 2018
- Full Text
- View/download PDF
25. Insulin amyloid structures and their influence on neural cells
- Author
-
Eva Bystrenova, Fabio Biscarini, Zuzana Gazova, Francesco Valle, Marianna Barbalinardo, and Zuzana Bednarikova
- Subjects
0301 basic medicine ,Amyloid ,medicine.medical_treatment ,macromolecular substances ,02 engineering and technology ,Protein aggregation ,Fibril ,Protein Aggregation, Pathological ,Cell membrane ,Neuroblastoma ,Protein Aggregates ,03 medical and health sciences ,Amyloid disease ,Colloid and Surface Chemistry ,Cell Line, Tumor ,Amyloid precursor protein ,medicine ,Humans ,Hypoglycemic Agents ,Insulin ,Physical and Theoretical Chemistry ,Cell Proliferation ,Microscopy ,biology ,Chemistry ,Temperature ,P3 peptide ,Surfaces and Interfaces ,General Medicine ,Hydrogen-Ion Concentration ,021001 nanoscience & nanotechnology ,AmyloidAmyloid diseasesProtein aggregationNeural cellsMicroscopy ,Neural cells ,030104 developmental biology ,medicine.anatomical_structure ,Microscopy, Fluorescence ,Biochemistry ,Cell culture ,Biophysics ,biology.protein ,0210 nano-technology ,Biotechnology - Abstract
Peptide aggregation into oligomers and fibrillar architectures is a hallmark of severe neurodegenerative pathologies, diabetes mellitus or systemic amyloidoses. The polymorphism of amyloid forms and their distribution are both effectors that potentially modulate the disease, thus it is important to understand the molecular basis of protein amyloid disorders through the interaction of the different amyloid forms with neural cells and tissues. Here we explore the effect of amyloid fibrils on the human neuroblastoma (SH-SY5Y) cell line in vitro. We control the kinetic of fibrillization of insulin at low pH and higher temperature. We use a multiscale characterization via fluorescence microscopy and multimodal scanning probe microscopy to correlate the number of cells and their morphology, with the finer details of the insulin deposits. Our results show that insulin aggregates deposited on neuroblastoma cell cultures lead to a progressive modification and decreased number of cells that correlates with the degree of fibrillization. SPM unravels that the aggregates strongly interact with the cell membrane, forming a stiff encase that possibly leads to an increased cell membrane stiffness and deficit in the metabolic exchanges between the cells and their environment. The presence of fibrils does not affect the number of cells at 24h whereas drop down to 60% is observed after 48h of incubation.
- Published
- 2018
- Full Text
- View/download PDF
26. Photoswitchable dismantlers of biomaterials made of amyloid fibrils
- Author
-
Przemyslaw Kozminski, Krzysztof Lyczko, Zuzana Bednarikova, Zuzana Gazova, Imola Wilhelm, Istvan Krizbai, Grzegorz Wieczorek, and Dorota Niedzialek
- Subjects
Inorganic Chemistry ,Structural Biology ,General Materials Science ,Physical and Theoretical Chemistry ,Condensed Matter Physics ,Biochemistry - Published
- 2021
- Full Text
- View/download PDF
27. Bexarotene Does Not Clear Amyloid Beta Plaques but Delays Fibril Growth: Molecular Mechanisms
- Author
-
Pham Dinh Quoc Huy, Zuzana Bednarikova, Mai Suan Li, Huynh Quang Linh, Zuzana Gazova, Le Huu Phuc, and Nguyen Quoc Thai
- Subjects
0301 basic medicine ,Apolipoprotein E ,Tetrahydronaphthalenes ,Physiology ,Amyloid beta ,Cognitive Neuroscience ,Plaque, Amyloid ,Molecular Dynamics Simulation ,Microscopy, Atomic Force ,010402 general chemistry ,Fibril ,01 natural sciences ,Biochemistry ,Protein Structure, Secondary ,03 medical and health sciences ,chemistry.chemical_compound ,medicine ,Humans ,Benzothiazoles ,Bexarotene ,Amyloid beta-Peptides ,Dose-Response Relationship, Drug ,Molecular Structure ,biology ,Water ,Cell Biology ,General Medicine ,Anticancer drug ,In vitro ,0104 chemical sciences ,Molecular Docking Simulation ,Kinetics ,Thiazoles ,Neuroprotective Agents ,030104 developmental biology ,chemistry ,biology.protein ,Biophysics ,Thioflavin ,Protein Multimerization ,Intracellular ,medicine.drug - Abstract
In 2012, it was reported that anticancer drug bexarotene reduced amyloid plaque and improved mental functioning in a small sample of mice engineered to exhibit Alzheimer's like symptoms. It has been suggested that bexarotene stimulates expression of apolipoprotein E (ApoE) leading to intracellular clearance of amyloid beta (Aβ). However, the effect of bexarotene on clearance of plaques has not been seen in some mouse models. Two interesting questions include whether bexarotene can destroy Aβ fibrils via direct interaction with them and how this compound impacts the lag phase in the fibril growth process. By the Thioflavin T fluorescence assay and atomic force microscopy, we have shown that bexarotene prolongs the lag phase, but it does not degrade Aβ fibrils. The impotence of bexarotene in destroying fibrils means that this compound is weakly bound to Aβ. On the other hand, the weak binding would prevent bexarotene from prolonging the lag phase. Thus, our two main in vitro observations seem to contradict each other. In order to settle this problem at the atomic level, we have performed all-atom molecular dynamics simulations in explicit water. We have demonstrated that bexarotene is not capable to reduce amyloid deposits due to weak binding to Aβ fibrils. However, it delays the self-assembly through reduction of the β-content of Aβ monomers at high enough ligand concentrations. Bexarotene is the first compound which displays such an unusual behavior. We have also shown that bexarotene has a low binding propensity to Aβ monomer and dimer.
- Published
- 2017
- Full Text
- View/download PDF
28. The molecular mass of dextran used to modify magnetite nanoparticles affects insulin amyloid aggregation
- Author
-
Zuzana Bednarikova, Peter Kopcansky, Katarina Siposova, Ivo Safarik, Zuzana Gazova, Martina Kubovcikova, Mirka Safarikova, and Kristyna Pospiskova
- Subjects
0301 basic medicine ,Amyloid ,Molecular mass ,Insulin ,medicine.medical_treatment ,Nanoparticle ,Nanotechnology ,02 engineering and technology ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,Fibril ,Electronic, Optical and Magnetic Materials ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,Dextran ,chemistry ,medicine ,Biophysics ,Molecule ,0210 nano-technology ,Superparamagnetism - Abstract
Protein transformation from its soluble state into amyloid aggregates is associated with amyloid-related diseases. Amyloid deposits of insulin fibrils have been found in the sites of subcutaneous insulin application in patients with prolonged diabetes. Using atomic force microscopy and ThT fluorescence assay we have investigated the interference of insulin amyloid aggregation with superparamagnetic Fe 3 O 4 -based nanoparticles (SPIONs) coated with dextran (DEX); molecular mass of dextran was equal to 15–20, 40 or 70 kDa. The obtained data indicate that all three types of dextran coated nanoparticles (NP-FeDEXs) are able to inhibit insulin fibrillization and to destroy amyloid fibrils. The extent of anti-amyloid activities depends on the properties of NP-FeDEXs, mainly on the size of nanoparticles which is determined by molecular mass of dextran molecules. The most effective inhibiting activity was observed for the smallest nanoparticles coated with 15–20 kDa dextran. Contrary, the highest destroying activity was observed for the largest NP-FeDEX (70 kDa dextran).
- Published
- 2017
- Full Text
- View/download PDF
29. Targeted inhibition of amyloidogenesis using a non-toxic, serum stable strategically designed cyclic peptide with therapeutic implications
- Author
-
Ranit Pariary, Dipita Bhattacharyya, Zuzana Bednarikova, Sreyan Raha, Atin K. Mandal, Zuzana Gazova, Kyriakos G. Varnava, Baijayanti Ghosh, Vijayalekshmi Sarojini, Bhisma N Ratha, and Anirban Bhunia
- Subjects
Amyloid ,medicine.medical_treatment ,Biophysics ,Model system ,02 engineering and technology ,Computational biology ,Biochemistry ,Peptides, Cyclic ,Analytical Chemistry ,Amyloidogenic Proteins ,03 medical and health sciences ,medicine ,Insulin ,Molecular Biology ,030304 developmental biology ,chemistry.chemical_classification ,0303 health sciences ,Chemistry ,Aggregation kinetics ,Biological activity ,021001 nanoscience & nanotechnology ,Cyclic peptide ,Fiber elongation ,Protein Multimerization ,0210 nano-technology - Abstract
Amyloidogenic disorders are currently rising as a global health issue, prompting more and more studies dedicated to the development of effective targeted therapeutics. The innate affinity of these amyloidogenic proteins towards the biomembranes adds further complexities to the systems. Our previous studies have shown that biologically active peptides can effectively target amyloidogenesis serving as an efficient therapeutic alternative in several amyloidogenic disorders. The structural uniqueness of the PWWP motif in the de novo designed heptapeptide, KR7 (KPWWPRR-NH2) was demonstrated to target insulin fiber elongation specifically. By working on insulin, an important model system in amyloidogenic studies, we gained several mechanistic insights into the inhibitory actions at the protein-peptide interface. Here, we report a second-generation non-toxic and serum stable cyclic peptide, based primarily on the PWWP motif that resulted in complete inhibition of insulin fibrillation both in the presence and absence of the model membranes. Using both low- and high-resolution spectroscopic techniques, we could delineate the specific mechanism of inhibition, at atomistic resolution. Our studies put forward an effective therapeutic intervention that redirects the default aggregation kinetics towards off-pathway fibrillation. Based on the promising results, this novel cyclic peptide can be considered an excellent lead to design pharmaceutical molecules against amyloidogenesis.
- Published
- 2019
30. Amino Acid Functionalized Superparamagnetic Nanoparticles Inhibit Lysozyme Amyloid Fibrillization
- Author
-
Alena Juríková, Zuzana Gazova, Zuzana Bednarikova, Iryna Antal, Martina Kubovcikova, Vlasta Zavisova, Andrea Antosova, Jozef Marek, and Martina Koneracka
- Subjects
Models, Molecular ,Amyloid ,Protein Conformation ,Lysine ,010402 general chemistry ,01 natural sciences ,Catalysis ,chemistry.chemical_compound ,Amyloid disease ,Protein Aggregates ,Cell Line, Tumor ,Animals ,Humans ,Amino Acids ,Cytotoxicity ,Magnetite Nanoparticles ,chemistry.chemical_classification ,010405 organic chemistry ,Organic Chemistry ,Tryptophan ,General Chemistry ,0104 chemical sciences ,Amino acid ,Kinetics ,chemistry ,Glycine ,Biophysics ,Muramidase ,Lysozyme ,Chickens - Abstract
Nanoparticles have great potential to be used in various biomedical applications, including therapy or diagnosis of amyloid-related diseases. The physical and chemical properties of iron oxide superparamagnetic nanoparticles (MNPs) functionalized with different amino acids (AAs), namely, with lysine (Lys), glycine (Gly), or tryptophan (Trp), have been characterized. The cytotoxicity of nanoparticles and their effect on amyloid fibrillization of lysozymes in vitro was also verified. The AA-MNPs under study are nontoxic to human SHSY5Y neuroblastoma cells. Moreover, the AA-MNPs were able to significantly inhibit lysozyme amyloid fibrillization and destroy amyloid fibrils. Kinetic studies revealed that the presence of AA-MNPs affected lysozyme fibrillization, namely, the lag phase and steady-state phase of the growth curves. The most effective activities were observed for Trp-MNPs, which revealed the importance of aromatic rings in the structure of AAs used as coating agents. The obtained results indicate the possible application of these AA-MNPs in the treatment of amyloid diseases associated with lysozyme or other amyloidogenic proteins.
- Published
- 2018
31. Modified polymer nanospheres – Characterization and their anti-amyloid activity to insulin amyloid aggregation
- Author
-
Martina Kubovcikova, Vladimír Girman, Zuzana Gazova, Zuzana Bednarikova, Iryna Antal, Vlasta Zavisova, and Martina Koneracka
- Subjects
Nanoparticle ,macromolecular substances ,02 engineering and technology ,01 natural sciences ,chemistry.chemical_compound ,stomatognathic system ,Polylactic acid ,0103 physical sciences ,Zeta potential ,Bovine serum albumin ,010302 applied physics ,chemistry.chemical_classification ,biology ,Chemistry ,Polymer ,respiratory system ,equipment and supplies ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,Electronic, Optical and Magnetic Materials ,biology.protein ,Biophysics ,Surface modification ,lipids (amino acids, peptides, and proteins) ,0210 nano-technology ,Iron oxide nanoparticles ,Superparamagnetism - Abstract
Polylactic acid-based nanoparticles are promising materials due to their tunable properties that are connected to surface modification. We have prepared polylactic acid nanospheres (PLA) with a non-magnetic phase (PLA loaded with various bovine serum albumin (BSA) concentrations) and magnetic phase (PLA loaded with magnetite nanoparticles coated with different amount of BSA (MFBSA)). The morphology, physico-chemical, magnetic and anti-amyloid properties were characterized by several biophysical methods. The amount of BSA used for PLA nanospheres or MFBSA modification played an important role in controlling the hydrodynamic size and zeta potential. In addition, magnetite loaded PLA nanospheres and MFBSA were all superparamagnetic. The potential of modified PLA nanospheres compared to MFBSA and 'naked' PLA to inhibit insulin amyloid fibrillation and destroy mature insulin fibrils was studied in vitro for samples with BSA/Fe3O4 weight ratio of 0.5. Destroying potential of samples was size–dependent, with the smallest MFBSA0.5 having the most significant effect. The strongest inhibitory effect on insulin fibrillation showed PLA-MFBSA0.5, slightly smaller than BSA modified PLA nanospheres.
- Published
- 2021
- Full Text
- View/download PDF
32. In vitrostudy on potential pharmacological activity of curcumin analogues and their copper complexes
- Author
-
Rois Benassi, Monica Saladini, Zuzana Gazova, Katarina Siposova, Erika Ferrari, and Giulia Orteca
- Subjects
0301 basic medicine ,Curcumin ,Antioxidant ,Amyloid ,Stereochemistry ,medicine.medical_treatment ,Drug Evaluation, Preclinical ,chemistry.chemical_element ,Curcumin analogues ,Microscopy, Atomic Force ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Antioxidants ,Inhibitory Concentration 50 ,Structure-Activity Relationship ,03 medical and health sciences ,chemistry.chemical_compound ,Alzheimer Disease ,Coordination Complexes ,Drug Discovery ,medicine ,Humans ,In vitro study ,Moiety ,IC50 ,Alzheimer's disease ,Aβ amyloid ,Copper complexes ,Protein aggregation inhibition ,Molecular Medicine ,Pharmacology ,Amyloid beta-Peptides ,Molecular Structure ,Chemistry ,Organic Chemistry ,Biological activity ,DNA ,Free Radical Scavengers ,Copper ,Peptide Fragments ,0104 chemical sciences ,030104 developmental biology - Abstract
Curcumin and its derivatives have attracted great interest in the prevention and treatment of Alzheimer's disease (AD), thanks both to the ability to hinder the formation of amyloid-beta (Aβ) aggregates and the ability to bind Cu (II) ion. In this article, we explore the ability of curcumin derivatives of K2T series to affect amyloid Aβ1-40 aggregation. These derivatives were obtained by introducing the t-butyl ester group through a methylenic spacer on the central carbon atom of the β-diketo moiety of curcumin frame. The studied curcuminoids were demonstrated to inhibit Aβ1-40 fibrillization at substoichiometric concentrations with IC50 value near that of curcumin. In addition the antioxidant properties and DNA interaction of their Cu(II) complexes is evaluated. The structure of Cu(II)-K2T31 complex is also proposed on the basis of DFT calculation. This article is protected by copyright. All rights reserved.
- Published
- 2016
- Full Text
- View/download PDF
33. Targeting copper(II)-induced oxidative stress and the acetylcholinesterase system in Alzheimer's disease using multifunctional tacrine-coumarin hybrid molecules
- Author
-
Ondrej Soukup, Patrik Poprac, Vlasta Brezová, Zuzana Bednarikova, Klaudia Jomová, Peter Lauro, Daniel Jun, Slavka Hamulakova, Zuzana Gazova, Martina Hrabinova, Kamil Kuca, Vendula Sepsova, Pavol Kristian, Lenka Drostinova, and Marian Valko
- Subjects
0301 basic medicine ,Antioxidant ,DNA damage ,medicine.medical_treatment ,chemistry.chemical_element ,GPI-Linked Proteins ,medicine.disease_cause ,01 natural sciences ,Biochemistry ,Inorganic Chemistry ,03 medical and health sciences ,chemistry.chemical_compound ,Alzheimer Disease ,Coumarins ,medicine ,Humans ,Organic chemistry ,Hydrogen peroxide ,Cholinesterase ,Amyloid beta-Peptides ,biology ,010405 organic chemistry ,Chemistry ,Combinatorial chemistry ,Acetylcholinesterase ,Copper ,Peptide Fragments ,0104 chemical sciences ,Oxidative Stress ,030104 developmental biology ,Butyrylcholinesterase ,Tacrine ,biology.protein ,Cholinesterase Inhibitors ,Oxidative stress ,medicine.drug - Abstract
Alzheimer's disease is a multifactorial disease that is characterized mainly by Amyloid-β (A-β) deposits, cholinergic deficit and extensive metal (copper, iron)-induced oxidative stress. In this work we present details of the synthesis, antioxidant and copper-chelating properties, DNA protection study, cholinergic activity and amyloid-antiaggregation properties of new multifunctional tacrine-7-hydroxycoumarin hybrids. The mode of interaction between copper(II) and hybrids and interestingly, the reduction of Cu(II) to Cu(I) species (for complexes Cu-5e-g) were confirmed by EPR measurements. EPR spin trapping on the model Fenton reaction, using 5,5-dimethyl-1-pyrroline N-oxide (DMPO) as a spin trap, demonstrated a significantly suppressed formation of hydroxyl radicals for the Cu-5e complex in comparison with free copper(II). This suggests that compound 5e upon coordination to free copper ion prevents the Cu(II)-catalyzed decomposition of hydrogen peroxide, which in turn may alleviate oxidative stress-induced damage. Protective activity of hybrids 5c and 5e against DNA damage in a Fenton system (copper catalyzed) was found to be in excellent agreement with the EPR spin trapping study. Compound 5g was the most effective in the inhibition of acetylcholinesterase (hAChE, IC50=38nM) and compound 5b was the most potent inhibitor of butyrylcholinesterase (hBuChE, IC50=63nM). Compound 5c was the strongest inhibitor of A-β1-40 aggregation, although a significant inhibition (>50%) was detected for compounds 5b, 5d, 5e and 5g. Collectively, these results suggest that the design and investigation of multifunctional agents containing along with the acetylcholinesterase inhibitory segment also an antioxidant moiety capable of alleviating metal (copper)-induced oxidative stress, may be of importance in the treatment of Alzheimer's disease.
- Published
- 2016
- Full Text
- View/download PDF
34. Evidence for Inhibition of Lysozyme Amyloid Fibrillization by Peptide Fragments from Human Lysozyme: A Combined Spectroscopy, Microscopy, and Docking Study
- Author
-
Zuzana Bednarikova, Zuzana Gazova, Nikolay E. Nifantiev, Rajiv K. Kar, Katarina Ulicna, Hans-Christian Siebert, Ruiyan Zhang, Anirban Bhunia, Anirban Ghosh, and Kamal H. Mroue
- Subjects
0301 basic medicine ,Amyloid ,Polymers and Plastics ,Protein Conformation ,Bioengineering ,Peptide ,Microscopy, Atomic Force ,010402 general chemistry ,Fibril ,01 natural sciences ,Biomaterials ,03 medical and health sciences ,chemistry.chemical_compound ,Protein structure ,Materials Chemistry ,Point Mutation ,Amino Acid Sequence ,Nuclear Magnetic Resonance, Biomolecular ,Peptide sequence ,chemistry.chemical_classification ,Circular Dichroism ,Rational design ,Peptide Fragments ,0104 chemical sciences ,Molecular Docking Simulation ,Spectrometry, Fluorescence ,030104 developmental biology ,chemistry ,Biochemistry ,Docking (molecular) ,Muramidase ,Protein folding ,Lysozyme ,Protein Binding - Abstract
Degenerative diseases, such as Alzheimer's and prion diseases, as well as type II diabetes, have a pathogenesis associated with protein misfolding, which routes with amyloid formation. Recent strategies for designing small-molecule and polypeptide antiamyloid inhibitors are mainly based on mature fibril structures containing cross β-sheet structures. In the present study, we have tackled the hypothesis that the rational design of antiamyloid agents that can target native proteins might offer advantageous prospect to design effective therapeutics. Lysozyme amyloid fibrillization was treated with three different peptide fragments derived from lysozyme protein sequence R(107)-R(115). Using low-resolution spectroscopic, high-resolution NMR, and STD NMR-restrained docking methods such as HADDOCK, we have found that these peptide fragments have the capability to affect lysozyme fibril formation. The present study implicates the prospect that these peptides can also be tested against other amyloid-prone proteins to develop novel therapeutic agents.
- Published
- 2016
- Full Text
- View/download PDF
35. Generation-dependent effect of PAMAM dendrimers on human insulin fibrillation and thermal stability
- Author
-
Katarina Siposova, Maria Bryszewska, Zuzana Gazova, Bartłomiej Pałecz, Olga Nowacka, Sylwia Belica-Pacha, and Katarzyna Milowska
- Subjects
0301 basic medicine ,Amyloid ,Dendrimers ,Polymers ,medicine.medical_treatment ,macromolecular substances ,02 engineering and technology ,Protein aggregation ,Microscopy, Atomic Force ,Biochemistry ,Protein Aggregates ,03 medical and health sciences ,Differential scanning calorimetry ,Structural Biology ,Dendrimer ,medicine ,Humans ,Insulin ,Organic chemistry ,Thermal stability ,Molecular Biology ,chemistry.chemical_classification ,Fibrillation ,Calorimetry, Differential Scanning ,Protein Stability ,Chemistry ,General Medicine ,Polymer ,021001 nanoscience & nanotechnology ,Fluorescence ,030104 developmental biology ,Biophysics ,medicine.symptom ,0210 nano-technology ,Protein Binding - Abstract
We have studied the effect of polyamidoamine (PAMAM) dendrimers of various generations on the thermal stability and fibrillation of human insulin. Thermostability of human insulin used differential scanning calorimetry (DSC), which showed two phase-transitions for insulin at 60 and 82°C. After adding dendrimers at 0.6 μmol/l, the first peaks disappeared and the second peaks were higher. We posited that, in the presence of dendrimers, the dimers in the solution were transformed into hexamers. The effect of dendrimers on insulin fibrillation was monitored by measuring ThT fluorescence, and visualization of insulin fibrils by transmission electron microscopy (TEM) and atomic force microscopy (AFM). The effect of PAMAM dendrimers on insulin fibrillation was strongly dependent on the dendrimers generation and dendrimer:protein ratio.
- Published
- 2016
- Full Text
- View/download PDF
36. Fullerenol C60(OH)16 prevents amyloid fibrillization of Aβ40 – in vitro and in silico approach
- Author
-
Zuzana Bednarikova, Maria-Magdalena Mocanu, Mai Suan Li, Diana Fedunova, Pham Dinh Quoc Huy, and Zuzana Gazova
- Subjects
Amyloid ,Stereochemistry ,General Physics and Astronomy ,Amyloidogenic Proteins ,Peptide ,02 engineering and technology ,010402 general chemistry ,01 natural sciences ,chemistry.chemical_compound ,Alzheimer Disease ,Computer Simulation ,Benzothiazoles ,Senile plaques ,Physical and Theoretical Chemistry ,chemistry.chemical_classification ,Chemistry ,021001 nanoscience & nanotechnology ,In vitro ,0104 chemical sciences ,Amino acid ,Thiazoles ,Monomer ,Thioflavin ,Fullerenes ,Salt bridge ,0210 nano-technology - Abstract
The generation of Aβ amyloid aggregates in the form of senile plaques in the brain is one of the pathological hallmarks of Alzheimer's disease (AD). There is no cure for AD and one of the recent treatment strategies is focused on the inhibition of amyloid fibrillization of Aβ peptide. Fullerene C60 has been proposed as a candidate for destroying Aβ aggregates but it is not soluble in water and its toxicity to cells remains largely ambiguous. To overcome these drawbacks, we synthesized and studied the effect of water-soluble fullerenol C60(OH)16 (fullerene C60 carrying 16 hydroxyl groups) on the amyloid fibrillization of Aβ40 peptide in vitro. Using a Thioflavin T fluorescent assay and atomic force microscopy it was found that C60(OH)16 effectively reduces the formation of amyloid fibrils. The IC50 value is in the low range (μg ml(-1)) suggesting that fullerenol interferes with Aβ40 aggregation at stoichiometric concentrations. The in silico calculations supported the experimental data. It was revealed that fullerenol tightly binds to monomer Aβ40 and polar, negatively charged amino acids play a key role. Electrostatic interactions dominantly contribute to the binding propensity via interaction of the oxygen atoms from the COO(-) groups of side chains of polar, negatively charged amino acids with the OH groups of fullerenol. This stabilizes contact with either the D23 or K28 of the salt bridge. Due to the lack of a well-defined binding pocket fullerenol is also inclined to locate near the central hydrophobic region of Aβ40 and can bind to the hydrophobic C-terminal of the peptide. Upon fullerenol binding the salt bridge becomes flexible, inhibiting Aβ aggregation. In order to assess the toxicity of fullerenol, we found that exposure of neuroblastoma SH-SY5Y cells to fullerenol caused no significant changes in viability after 24 h of treatment. These results suggest that fullerenol C60(OH)16 represents a promising candidate as a therapeutic for Alzheimer's disease.
- Published
- 2016
- Full Text
- View/download PDF
37. Bioactive properties of chitosan stabilized magnetic nanoparticles – Focus on hyperthermic and anti-amyloid activities
- Author
-
Alena Juríková, Vlasta Zavisova, Iryna Khmara, Martina Kubovcikova, Matus Molcan, Zuzana Bednarikova, Zuzana Gazova, Eva Baranovicova, Andrea Antosova, Martina Koneracka, and Vladimír Girman
- Subjects
010302 applied physics ,chemistry.chemical_classification ,Amyloid ,Chemistry ,Coprecipitation ,02 engineering and technology ,engineering.material ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,Polysaccharide ,01 natural sciences ,Electronic, Optical and Magnetic Materials ,Chitosan ,chemistry.chemical_compound ,Magnetic hyperthermia ,Coating ,Chemical engineering ,0103 physical sciences ,engineering ,Magnetic nanoparticles ,0210 nano-technology ,Iron oxide nanoparticles - Abstract
The magnetic nanoparticles have great potential in biomedical and clinical applications because of their unique physicochemical properties. We have synthesized magnetite nanoparticles (MNPs) by coprecipitation method followed by their coating with biodegradable, biocompatible and bioactive polysaccharide chitosan. Complex physicochemical characterization of chitosan-coated MNPs (Chit-MNPs) dispersed in water was performed using various methods to determine their structure, morphology, magnetic and bioactive properties. The experimental evaluation of the specific absorption rate (SAR) of both uncoated MNPs and modified Chit-MNPs was made by calorimetric measurements. The SAR values of prepared samples increased with the applied magnetic fields H up to ~7.9 kA·m−1. Moreover, the SAR values of Chit-MNPs were higher than those of MNPs demonstrating the possibility of their utilization as nanoheaters for hyperthermic treatment. The bioactivity of Chit-MNPs was investigated to characterize their anti-amyloid properties. The ability of Chit-MNPs to interfere with α-lactalbumin amyloid fibrils (αLAF) was studied using ThT assay and AFM microscopy. It was observed that Chit-MNPs are able to destroy α-lactalbumin amyloid fibrils in a concentration-dependent manner.
- Published
- 2020
- Full Text
- View/download PDF
38. Nanomedical Relevance of the Intermolecular Interaction Dynamics-Examples from Lysozymes and Insulins
- Author
-
Bhisma N Ratha, Andrea Antosova, Axel J. Scheidig, Tibor Kozár, Slavomira Ponikova, Zuzana Bednarikova, Zuzana Gazova, J. Steinmeyer, Mushira Abdelaziz Enani, Ruiyan Zhang, Ning Zhang, Anirban Bhunia, Roland Schauer, Lisha Wu, Nikolay E. Nifantiev, Marzieh Mohri, Martin Billeter, Thomas Eckert, Bengt Nordén, Philipp Markart, Andreas Günther, Athanasios K. Petridis, Vadim B. Krylov, Karsten Hesse, and Hans-Christian Siebert
- Subjects
0303 health sciences ,Molecular model ,General Chemical Engineering ,Dimer ,Insulin ,medicine.medical_treatment ,Trimer ,General Chemistry ,Nuclear magnetic resonance spectroscopy ,010402 general chemistry ,Fibril ,01 natural sciences ,Article ,0104 chemical sciences ,lcsh:Chemistry ,03 medical and health sciences ,chemistry.chemical_compound ,lcsh:QD1-999 ,chemistry ,Biophysics ,medicine ,Thioflavin ,Lysozyme ,030304 developmental biology - Abstract
Insulin and lysozyme share the common features of being prone to aggregate and having biomedical importance. Encapsulating lysozyme and insulin in micellar nanoparticles probably would prevent aggregation and facilitate oral drug delivery. Despite the vivid structural knowledge of lysozyme and insulin, the environment-dependent oligomerization (dimer, trimer, and multimer) and associated structural dynamics remain elusive. The knowledge of the intra- and intermolecular interaction profiles has cardinal importance for the design of encapsulation protocols. We have employed various biophysical methods such as NMR spectroscopy, X-ray crystallography, Thioflavin T fluorescence, and atomic force microscopy in conjugation with molecular modeling to improve the understanding of interaction dynamics during homo-oligomerization of lysozyme (human and hen egg) and insulin (porcine, human, and glargine). The results obtained depict the atomistic intra- and intermolecular interaction details of the homo-oligomerization and confirm the propensity to form fibrils. Taken together, the data accumulated and knowledge gained will further facilitate nanoparticle design and production with insulin or lysozyme-related protein encapsulation.
- Published
- 2018
39. Curcumin derivatives and Aβ-fibrillar aggregates: An interactions’ study for diagnostic/therapeutic purposes in neurodegenerative diseases
- Author
-
Zuzana Bednarikova, Maria Cristina Menziani, Giovanna Rigillo, Zuzana Gazova, Francesco Tavanti, Valentina Basile, Monica Saladini, Giulia Orteca, Luca Rigamonti, Carol Imbriano, Mattia Asti, and Erika Ferrari
- Subjects
0301 basic medicine ,Curcumin ,Amyloid ,Cell Survival ,Clinical Biochemistry ,Pharmaceutical Science ,Molecular Dynamics Simulation ,010402 general chemistry ,medicine.disease_cause ,Fibril ,01 natural sciences ,Biochemistry ,03 medical and health sciences ,chemistry.chemical_compound ,Mice ,Protein Aggregates ,Structure-Activity Relationship ,Drug Discovery ,medicine ,Animals ,Molecular Biology ,Cells, Cultured ,Cell Proliferation ,Amyloid β fibrillar aggregates ,Amyloid beta-Peptides ,Dose-Response Relationship, Drug ,Molecular Structure ,Alzheimer's disease ,Curcumin-derivatives ,Hippocampal HT-22 mouse cells ,Molecular dynamics simulations ,Molecular Medicine ,3003 ,Drug Discovery3003 Pharmaceutical Science ,Organic Chemistry ,Glutamate receptor ,Biological activity ,Neurodegenerative Diseases ,In vitro ,0104 chemical sciences ,Molecular Docking Simulation ,030104 developmental biology ,chemistry ,Biophysics ,Protein folding ,Oxidative stress - Abstract
Several neurodegenerative diseases, like Alzheimer’s (AD), are characterized by amyloid fibrillar deposition of misfolded proteins, and this feature can be exploited for both diagnosis and therapy design. In this paper, structural modifications of curcumin scaffold were examined in order to improve its bioavailability and stability in physiological conditions, as well as its ability to interfere with β-amyloid fibrils and aggregates. The acid-base behaviour of curcumin derivatives, their pharmacokinetic stability in physiological conditions, and in vitro ability to interfere with Aβ fibrils at different incubation time were investigated. The mechanisms governing these phenomena have been studied at atomic level by means of molecular docking and dynamic simulations. Finally, biological activity of selected curcuminoids has been investigated in vitro to evaluate their safety and efficiency in oxidative stress protection on hippocampal HT-22 mouse cells. Two aromatic rings, π-conjugated structure and H-donor/acceptor substituents on the aromatic rings showed to be the sine qua non structural features to provide interaction and disaggregation activity even at very low incubation time (2h). Computational simulations proved that upon binding the ligands modify the conformational dynamics and/or interact with the amyloidogenic region of the protofibril facilitating disaggregation. Significantly, in vitro results on hippocampal cells pointed out protection against glutamate toxicity and safety when administered at low concentrations (1 μM). On the overall, in view of its higher stability in physiological conditions with respect to curcumin, of his rapid binding to fibrillar aggregates and strong depolymerizing activity, phtalimmide derivative K2F21 appeared a good candidate for both AD diagnostic and therapeutic purposes.
- Published
- 2018
40. In Silico and in Vitro Study of Binding Affinity of Tripeptides to Amyloid β Fibrils: Implications for Alzheimer’s Disease
- Author
-
Zuzana Bednarikova, Zuzana Gazova, Andrea Antosova, Mai Suan Li, Katarina Siposova, Truc Trang Nguyen, and Man Hoang Viet
- Subjects
Models, Molecular ,Amyloid beta-Peptides ,Chemistry ,In silico ,macromolecular substances ,Plasma protein binding ,Tripeptide ,Fibril ,Molecular mechanics ,In vitro ,Surfaces, Coatings and Films ,chemistry.chemical_compound ,Biochemistry ,Alzheimer Disease ,Docking (molecular) ,Materials Chemistry ,Computer Simulation ,Thioflavin ,Physical and Theoretical Chemistry ,Oligopeptides ,Protein Binding - Abstract
Self-assembly of Aβ peptides into amyloid aggregates has been suggested as the major cause of Alzheimer's disease (AD). Nowadays, there is no medication for AD, but experimental data indicate that reversion of the process of amyloid aggregation reduces the symptoms of disease. In this paper, all 8000 tripeptides were studied for their ability to destroy Aβ fibrils. The docking method and the more sophisticated MM-PBSA (molecular mechanics Poisson-Boltzmann surface area) method were employed to calculate the binding affinity and mode of tripeptides to Aβ fibrils. The ability of these peptides to depolymerize Aβ fibrils was also investigated experimentally using atomic force microscopy and fluorescence spectroscopy (Thioflavin T assay). It was shown that tripeptides prefer to bind to hydrophobic regions of 6Aβ9-40 fibrils. Tripeptides WWW, WWP, WPW and PWW were found to be the most potent binders. In vitro experiments showed that tight-binding tripeptides have significant depolymerizing activities and their DC50 values determined from dose-response curves were in micromolar range. The ability of nonbinding (GAM, AAM) and weak-binding (IVL and VLA) tripeptides to destroy Aβ fibrils was negligible. In vitro data of tripeptide depolymerizing activities support the predictions obtained by molecular docking and all-atom simulation methods. Our results suggest that presence of multiple complexes of heterocycles forming by tryptophan and proline residues in tripeptides is crucial for their tight binding to Aβ fibrils as well as for extensive fibril depolymerization. We recommend PWW for further studies as it has the lowest experimental binding constant.
- Published
- 2015
- Full Text
- View/download PDF
41. Destroying activity of magnetoferritin on lysozyme amyloid fibrils
- Author
-
Zuzana Bednarikova, Andrea Antosova, Peter Kopcansky, Mikhail V. Avdeev, Z. Mitróová, Milan Timko, Viktor I. Petrenko, Katarina Siposova, Zuzana Gazova, L. Melníková, and Vasil M. Garamus
- Subjects
Amyloid ,Chemistry ,Magnetoferritin ,macromolecular substances ,Condensed Matter Physics ,Amyloid fibril ,Fibril ,Fluorescence spectroscopy ,Electronic, Optical and Magnetic Materials ,chemistry.chemical_compound ,ddc:539.1 ,mental disorders ,Biophysics ,Thioflavin ,Lysozyme - Abstract
Presence of protein amyloid aggregates (oligomers, protofilaments, fibrils) is associated with many diseases as diabetes mellitus or Alzheimer\'s disease. The interaction between lysozyme amyloid fibrils and magnetoferritin loaded with different amount of iron atoms (168 or 532 atoms) has been investigated by small-angle X-rays scattering and thioflavin T fluorescence measurements. Results suggest that magnetoferritin caused an iron atom-concentration dependent reduction of lysozyme fibril size.
- Published
- 2015
- Full Text
- View/download PDF
42. Design, synthesis and in vitro testing of 7-methoxytacrine-amantadine analogues: a novel cholinesterase inhibitors for the treatment of Alzheimer’s disease
- Author
-
Katarina Siposova, Kamil Musilek, Daniel Jun, Zuzana Gazova, Anna Horova, Eugenie Nepovimova, Katarina Spilovska, Jan Korabecny, Rafael Dolezal, Kamil Kuca, and Lucie Drtinova
- Subjects
biology ,Stereochemistry ,Organic Chemistry ,Amantadine ,Pharmacology ,Acetylcholinesterase ,In vitro ,chemistry.chemical_compound ,chemistry ,Thiourea ,biology.protein ,Urea ,medicine ,General Pharmacology, Toxicology and Pharmaceutics ,Binding site ,Butyrylcholinesterase ,Cholinesterase ,medicine.drug - Abstract
A series of cholinesterase inhibitors acting as dual binding site heterodimers for the management of Alzheimer’s disease were developed. The series of 7-methoxytacrine (7-MEOTA)-amantadine ureas (11–17) was designed, prepared evaluated in vitro towards human acetyl/butyryl cholinesterase (hAChE, hBChE) and compared with the series of 7-MEOTA-amantadine thioureas (4–10). The heterodimers have different length of linkers combining 7-MEOTA and amantadine moieties. In comparison with 7-MEOTA, the newly synthesized compounds were better inhibitors of both cholinesterases. The urea analogues did not have the anticipated benefit of increased inhibitory activity and have comparable IC50 values with thiourea derivatives.
- Published
- 2015
- Full Text
- View/download PDF
43. Inhibition of insulin amyloid fibrillization by glyco-acridines: an in vitro and in silico study
- Author
-
Nguyen Anh Tuan, Mai Suan Li, Zuzana Bednarikova, Andrea Antosova, Quan V. Vuong, Zuzana Gazova, Katarina Siposova, and Pham Dinh Quoc Huy
- Subjects
Pharmacology ,Amyloid ,Insulin ,medicine.medical_treatment ,In silico ,Organic Chemistry ,Pharmaceutical Science ,Protein aggregation ,Biochemistry ,Small molecule ,In vitro ,chemistry.chemical_compound ,Molecular dynamics ,chemistry ,Drug Discovery ,Acridine ,medicine ,Molecular Medicine - Abstract
The formation of insulin amyloid fibrils leads to accumulation of protein aggregates at the sites of insulin injection and interferes with insulin delivery for treatment of diabetes. We investigated the ability of small molecules, aromatic glyco-acridine derivatives, to prevent insulin fibrillization. Fluorescence spectroscopy and atomic force microscopy have shown that glyco-acridines interfere with insulin aggregation and that their inhibitory activity depends on their structure. The binding free energies, estimated by all-atom molecular dynamics simulations, indicate that the non-polar interaction is the key factor controlling the binding affinity of glyco-acridine derivatives to insulin. We introduced, for the first time, geometrical descriptors that allowed us to distinguish the binding affinities of stereo-isomers. The binding free energies correlate with the distance between the planes of the acridine tricyclic core and the side parts in the unbound and bound states. In addition, the aromatic part of glyco-acridines is important for directing the ligand–dimer insulin interaction. Our findings may provide a basis for the development of new small moleculeinhibitors for the treatment of amyloid-related diseases.
- Published
- 2015
- Full Text
- View/download PDF
44. Alzheimer's Disease Drugs- In Vitro Comparison of Cholinesterase Inhibition and beta-amyloid Modulation
- Author
-
Ondrej Holas, Jan Korabecny, Zuzana Gazova, Eugenie Nepovimova, Katarina Spilovska, Katarina Siposova, Kamil Musilek, Lukas Gorecki, Veronika Opletalova, Kamil Kuca, and Eva Mezeiova
- Subjects
Amyloid ,Chemistry ,Drug Discovery ,Pharmaceutical Science ,Molecular Medicine ,Disease ,Pharmacology ,Beta (finance) ,In vitro ,Cholinesterase inhibition - Published
- 2017
- Full Text
- View/download PDF
45. Inhibition of lysozyme amyloidogenesis by phospholipids. Focus on long-chain dimyristoylphosphocholine
- Author
-
Andrey Musatov, Jana Kubackova, Erna Demjen, Slavomira Ponikova, Andrea Antosova, Zuzana Bednarikova, Zuzana Gazova, and Jozef Marek
- Subjects
0301 basic medicine ,Circular dichroism ,Amyloid ,Phosphorylcholine ,Biophysics ,Phospholipid ,Amyloidogenic Proteins ,Fibril ,Microscopy, Atomic Force ,Biochemistry ,Protein Aggregation, Pathological ,Protein–protein interaction ,03 medical and health sciences ,chemistry.chemical_compound ,medicine ,Animals ,Humans ,Molecular Biology ,Phospholipids ,Liposome ,Amyloidosis ,technology, industry, and agriculture ,Phospholipid Ethers ,medicine.disease ,030104 developmental biology ,chemistry ,Phosphatidylcholines ,lipids (amino acids, peptides, and proteins) ,Muramidase ,Lysozyme ,Dimyristoylphosphatidylcholine ,Chickens - Abstract
Background Protein amyloid aggregation is an important pathological feature of a group of different degenerative human diseases called amyloidosis. We tested effect of two phospholipids, 1,2-dimyristoyl-sn-glycero-3-phosphocholine (DMPC) and 1,2-dihexanoyl-sn-glycero-3-phosphocholine (DHPC) on amyloid aggregation of hen egg white (HEW) lysozyme in vitro. Methods Effect of phospholipids was investigated using spectroscopic techniques (fluorescence and CD spectroscopy), atomic force microscopy and image analysis. Results Phospholipids DMPC and DHPC are able dose-dependently inhibit lysozyme fibril formation. The length of the phospholipid tails and different structural arrangement of the phospholipid molecules affect inhibitory activity; long-chain DMPC inhibits fibrillization more efficiently. Interestingly, interference of DMPC with lysozyme amyloid fibrils has no effect on their morphology or amount. Conclusions Phospholipid molecules have significant effect on lysozyme amyloid fibrillization. We suggest that inhibitory activity is due to the interference of phospholipids with lysozyme leading to the blocking of the intermolecular protein interactions important for formation of the cross-β structure within the core of the fibrils. The higher inhibitory activity of DMPC is probably due to adsorption of protein molecules on the liposome surfaces which caused decrease of species needed for fibrillization. Interaction of the phospholipids with formed fibrils is not sufficient enough to interrupt the bonds in β-sheets which are required for destroying of amyloid fibrils. General significance The obtained results contribute to a better understanding of the effect of phospholipids on amyloid fibrillization of the lysozyme. The data suggest that DMPC and DHPC phospholipids represent agents able to modulate lysozyme amyloid aggregation.
- Published
- 2017
46. Metabolic Response of Human Osteoarthritic Cartilage to Biochemically Characterized Collagen Hydrolysates
- Author
-
Steinmeyer, Saskia Schadow, Viktor Simons, Guenter Lochnit, Jens Kordelle, Zuzana Gazova, Hans-Christian Siebert, and Juergen
- Subjects
collagen hydrolysate ,osteoarthritis ,cartilage ,ADAMTS ,MMP ,TIMP ,IL6, MALDI-TOF ,Peptan® F ,Mobiforte® - Abstract
The most frequent disease of the locomotor system is osteoarthritis (OA), which, as a chronic joint disease, might benefit more from nutrition than acute illnesses. Collagen hydrolysates (CHs) are peptidic mixtures that are often used as nutraceuticals for OA. Three CHs were characterized biochemically and pharmacologically. Our biophysical (MALDI-TOF-MS, NMR, AFM) and fluorescence assays revealed marked differences between CHs of fish (Peptan® F 5000, Peptan® F 2000) and porcine (Mobiforte®) origin with respect to the total number of peptides and common peptides between them. Using a novel dual radiolabeling procedure, no CH modulated collagen biosynthesis in human knee cartilage explants. Peptan® F 2000 enhanced the activities of the aggrecanase ADMATS4 and ADMATS5 in vitro without loss of proteoglycan from cartilage explants; the opposite effect was observed with Mobiforte®. Interleukin (IL)-6, matrix metalloproteinase (MMP)-1, -3 and -13 levels were elevated in explants that were treated with Mobiforte® and Peptan® F 5000, but not with Peptan® F 2000. In conclusion, the heterogeneous peptide composition and disparate pharmacological effects between CHs suggest that the effect of a CH preparation cannot be extrapolated to other formulations. Thus, the declaration of a CH as a safe and effective nutraceutical requires a thorough examination of its pleiotropic effects.
- Published
- 2017
- Full Text
- View/download PDF
47. Metabolic response of human osteoarthritic cartilage to biochemically characterized collagen hydrolysates
- Author
-
Saskia Schadow, Viktor S. Simons, Guenter Lochnit, Jens Kordelle, Zuzana Gazova, Hans-Christian Siebert, Juergen Steinmeyer, and Laboratory for Experimental Orthopaedics, Department of Orthopaedics
- Subjects
Cartilage, Articular ,Peptan® F ,Magnetic Resonance Spectroscopy ,Cell Survival ,Protein Hydrolysates ,Swine ,Mobiforte® ,ADAMTS ,Microscopy, Atomic Force ,Article ,lcsh:Chemistry ,Tissue Culture Techniques ,Chondrocytes ,collagen hydrolysate ,Endopeptidases ,Osteoarthritis ,Animals ,Humans ,TIMP ,ddc:610 ,cartilage ,lcsh:QH301-705.5 ,Dose-Response Relationship, Drug ,MMP ,Interleukin-6 ,Fishes ,Tissue Inhibitor of Metalloproteinases ,Receptors, Interleukin-6 ,Medical sciences Medicine ,Matrix Metalloproteinases ,osteoarthritis ,lcsh:Biology (General) ,lcsh:QD1-999 ,Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization ,IL6, MALDI-TOF ,Proteoglycans ,Collagen - Abstract
The most frequent disease of the locomotor system is osteoarthritis (OA), which, as a chronic joint disease, might benefit more from nutrition than acute illnesses. Collagen hydrolysates (CHs) are peptidic mixtures that are often used as nutraceuticals for OA. Three CHs were characterized biochemically and pharmacologically. Our biophysical (MALDI-TOF-MS, NMR, AFM) and fluorescence assays revealed marked differences between CHs of fish (Peptan® F 5000, Peptan® F 2000) and porcine (Mobiforte®) origin with respect to the total number of peptides and common peptides between them. Using a novel dual radiolabeling procedure, no CH modulated collagen biosynthesis in human knee cartilage explants. Peptan® F 2000 enhanced the activities of the aggrecanase ADMATS4 and ADMATS5 in vitro without loss of proteoglycan from cartilage explants; the opposite effect was observed with Mobiforte®. Interleukin (IL)-6, matrix metalloproteinase (MMP)-1, -3 and -13 levels were elevated in explants that were treated with Mobiforte® and Peptan® F 5000, but not with Peptan® F 2000. In conclusion, the heterogeneous peptide composition and disparate pharmacological effects between CHs suggest that the effect of a CH preparation cannot be extrapolated to other formulations. Thus, the declaration of a CH as a safe and effective nutraceutical requires a thorough examination of its pleiotropic effects.
- Published
- 2017
- Full Text
- View/download PDF
48. Polymorphism of hen egg white lysozyme amyloid fibrils influences the cytotoxicity in LLC-PK1 epithelial kidney cells
- Author
-
Alexandru Filippi, Zuzana Bednarikova, Andrea Antosova, Constanta Ganea, Zuzana Gazova, Erna Demjen, Katarina Siposova, Jozef Marek, Maria-Magdalena Mocanu, and Irina Baran
- Subjects
Amyloid ,Programmed cell death ,Apoptosis ,macromolecular substances ,Biology ,Kidney ,Fibril ,Biochemistry ,Protein Structure, Secondary ,Necrosis ,Amyloid disease ,chemistry.chemical_compound ,Structural Biology ,Animals ,Cytotoxic T cell ,Cytotoxicity ,Molecular Biology ,Cell Proliferation ,Cytotoxins ,Cell growth ,Epithelial Cells ,General Medicine ,Hydrogen-Ion Concentration ,chemistry ,Biophysics ,Muramidase ,Protein Multimerization ,Lysozyme - Abstract
The polymorphism of amyloid fibrils is potentially crucial as it may underlie the natural variability of amyloid diseases and could be important in developing a fuller understanding of the molecular basis of protein deposition disorders. This study examines morphological differences in lysozyme fibrils and the implications of these differences in terms of cytotoxicity. The structural characteristics of amyloid fibrils formed under two different experimental conditions (acidic and neutral) were evaluated using spectroscopic methods, atomic force microscopy and image analysis. Growth curves and apoptotic/necrotic assays were used to determine the cytotoxic effect of fibrils on the LLC-PK1 renal cells. The results reveal that both types of mature lysozyme amyloid fibrils are actively involved in the cytotoxic process, however each exhibit different levels of cytotoxicity. Fibrils formed at acidic pH affect cell growth in a dose-dependent manner, but a threshold-dependent inhibition of cell growth was observed in the case of lysozyme fibrils prepared at neutral pH. Experiments examining the mechanism of the cell death suggest that both types of mature lysozyme fibrils trigger late apoptosis/necrosis at different fibril concentrations. Our findings clearly indicate that the intrinsic differences between amyloid fibrils due to their polymorphism result in different degrees of cytotoxicity.
- Published
- 2014
- Full Text
- View/download PDF
49. On the determination of the helical structure parameters of amyloid protofilaments by small-angle neutron scattering and atomic force microscopy
- Author
-
László Almásy, Artem Feoktystov, Milan Timko, Hubert Gojzewski, Andrea Antosova, Zuzana Gazova, V. L. Aksenov, Peter Kopcansky, Katarina Siposova, Mikhail V. Avdeev, and Viktor I. Petrenko
- Subjects
Crystallography ,Chemistry ,Atomic force microscopy ,Kinetic isotope effect ,Sample preparation ,Mica ,Neutron scattering ,Impulse (physics) ,Small-angle neutron scattering ,General Biochemistry, Genetics and Molecular Biology ,Alpha helix - Abstract
The helical structure of amyloid protofilaments of hen egg white lysozyme was analyzed by small-angle neutron scattering (SANS) and atomic force microscopy (AFM). The structure of these formations in bulk solutions was adequately described by SANS in terms of a simplified model of a helix with spherical structural units. The found main helix parameters (pitch and effective diameter) are consistent with the results of AFM analysis for amyloid fibrils adsorbed on a mica surface. Both methods reveal a strong isotope effect on the structure of amyloid fibrils with respect to the substitution of heavy for light water in the solvent. Specific details responsible for the structural differences when comparing SANS and AFM data are discussed from the viewpoint of methodological aspects, the influence of different (native and adsorbed) amyloid states and sample preparation.
- Published
- 2013
- Full Text
- View/download PDF
50. Anti-amyloidogenic activity of glutathione-covered gold nanoparticles
- Author
-
Zuzana Daxnerova, Andrea Antosova, Francesco Valle, Fabio Biscarini, Eva Valušová, Eva Bystrenova, Zuzana Gazova, Marián Antalík, and Diana Fedunova
- Subjects
Materials science ,Amyloid ,Nanoparticle ,Bioengineering ,HEREDITARY RENAL AMYLOIDOSIS, OXIDATIVE STRESS, HEN LYSOZYME, PROTEIN FIBRILLATION, ALZHEIMERS-DISEASE, CLUSTERS, INTERMEDIATE, FIBRILLOGENESIS, NANOCRYSTALS, SPECTROSCOPY ,Biomaterials ,chemistry.chemical_compound ,mental disorders ,OXIDATIVE STRESS ,PROTEIN FIBRILLATION ,SPECTROSCOPY ,HEREDITARY RENAL AMYLOIDOSIS ,Depolymerization ,Fibrillogenesis ,Glutathione ,ALZHEIMERS-DISEASE ,INTERMEDIATE ,NANOCRYSTALS ,chemistry ,Biochemistry ,Mechanics of Materials ,Colloidal gold ,FIBRILLOGENESIS ,Biophysics ,Thioflavin ,Lysozyme ,CLUSTERS ,HEN LYSOZYME - Abstract
This study is an investigation of the effect of biocompatible glutathione-covered gold nanoparticles (AuSG_7) with an average size of 3 nm on the amyloid fibrils of hen egg-white lysozyme. The anti-amyloid activity of AuSG_7 nanoparticles on this protein was monitored with thioflavin T assay, atomic force microscopy and transmission electron microscopy. The study found that AuSG_7 nanoparticles in vitro depolymerize the amyloid aggregates and inhibit lysozyme aggregate formation. The ability to inhibit amyloid formation and promote amyloid disassembly has concentration-dependent characteristics: the concentration of nanoparticles at which inhibition is half maximal (IC 50 ) was found to be 6.19 μg/mL, and the concentration at which depolymerization is half maximal (DC 50 ) was found to be 8.26 μg/mL.
- Published
- 2012
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.