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The genus Marinobacter is very broadly distributed in global environments and is considered as aerobic heterotroph. In this study, six Marinobacter strains were identified with autotrophic thiosulfate oxidation capacity. These strains, namely Marinobacter guineae M3BT, Marinobacter aromaticivorans D15-8PT, Marinobacter vulgaris F01T, Marinobacter profundi PWS21T, Marinobacter denitrificans JB02H27T, and Marinobacter sp. ST-1M (with a 99.93% similarity to the 16S rDNA sequences of Marinobacter salsuginis SD-14BT), were screened out of 32 Marinobacter strains by autotrophic thiosulfate oxidization medium. The population of cells grew in a chemolithotrophic medium, increasing from 105 cells/mL to 107 cells/mL within 5 d. This growth was accompanied by the consumption of thiosulfate 3.59 mmol/L to 9.64 mmol/L and the accumulation of sulfate up to 0.96 mmol/L, and occasionally produced sulfur containing complex particles. Among these Marinobacter strains, it was also found their capability of oxidizing thiosulfate to sulfate in a heterotrophic medium. Notably, M. vulgaris F01T and M. antarcticus ZS2-30T showed highly significant production of sulfate at 9.45 mmol/L and 3.10 mmol/L. Genome annotation indicated that these Marinobacter strains possess a complete Sox cluster for thiosulfate oxidation. Further phylogenetic analysis of the soxB gene revealed that six Marinobacter strains formed a separate lineage within Gammaproteobacteria and close to obligate chemolithoautotroph Thiomicrorhabdus arctica. The results indicated that thiosulfate oxidizing and chemolithoautotrophic potential in Marinobacter genus, which may contribute to the widespread of Marinobacter in the global ocean. [ABSTRACT FROM AUTHOR]

The aim of this study is to model a hydrogenotrophic denitrification process in a venturi-integrated submerged membrane bioreactor (MBR) system. The MBR was operated in batch mode using feed concentrations of 100 and 150 mg NO3-N/L. In contrast to most of the denitrification process models that represent the mixed culture with one composite biomass parameter, the biomass was subdivided into two main categories in this modelling study: mainly nitrate-reducing biomass and mainly nitrite-reducing biomass. The determination coefficients (r2) in the range of 0.97–0.99 indicate that the model successfully simulates the concentrations of nitrate- and nitrite-nitrogen in the bioreactor. The maximum specific growth rate of nitrite-reducing biomass (0.06 h−1) was found to be higher than that of nitrate-reducing biomass (0.0002 h−1). Similarly, the growth yield coefficient of nitrite-reducing biomass was higher than that of nitrate-reducing biomass (0.44 vs. 0.31 g biomass/g substrate). The kinetic and stoichiometric coefficients obtained from this modelling study suggest that the limiting step determining the overall conversion rate of hydrogenotrophic denitrification process is the conversion of nitrite to nitrogen gas. [ABSTRACT FROM AUTHOR]

Nodule bacteria (rhizobia) represent the highly developed model for the evolutionary genetics of symbiotic microorganisms. We propose to divide these polyphyletically originated bacteria into two groups that have arisen through: a) genomic rearrangements in free-living N2-fixers (primary rhizobia originated via the phyletic evolution strategy); b) transfer of symbiotically specialized (sym) genes from rhizobia to various soil and plant-associated bacteria (secondary rhizobia originated via the reticular evolution strategy). Primary rhizobia are represented by genus Bradyrhizobium close to Rhodopsedomonas. Transformation of these phototrophic N2-fixers into plant symbionts is evidenced by transitional (ancestral) Bradyrhizobium genotypes that combine the legume nodulation with photosynthesis. A crucial stage in rhizobia evolution was represented by acquisition of the ability to produce lipochitooligosaccharide Nod factors (NFs) eliciting the nodule development. Acquisition of NF synthesis allowed the ancestral Bradyrhizobium strains to switch from autotrophy to assimilation of the plant photosynthesis products resulted in heterotrophic bradyrhizobia (e.g., B. japonicum, B. elkanii) harboring sym genes in chromosomes. The best studied secondary rhizobia are represented by the Rhizobiaceae (Rhizobium, Sinorhizobium, Neorhizobium) species in which sym genes are located in mobile plasmids or chromids. Interactions of these species with legumes may be addressed as altruistic symbiosis based on development of non-reproducible bacteroids which supply hosts with N compounds. Since the rhizobia evolution involves the "gain-and-loss" genetic strategy, constructing highly active strains for legume crop inoculation should be based on activation of positive regulators of symbiotic N2 fixation and on inactivation of its negative regulators. [ABSTRACT FROM AUTHOR]

The use of functional feed additives is an important approach to both, prevent and fight, viral diseases in aquaculture. In this regard, microalgae-derived products, and, more specifically, microalgal exopolysaccharides (EPSs), have attracted attention, since multiple biotechnological applications are being described for these molecules. Furthermore, depending on culture conditions, the composition and, therefore, properties of EPSs can vary. In the present study, the antiviral activity of EPSs from Tetraselmis suecica and Porphyridium cruentum cultured under autotrophic and heterotrophic conditions has been evaluated in vitro against Viral Haemorrhagic Septicaemia Virus (VHSV), an important pathogen in fish farming. Results showed that EPSs from both species have anti-VHSV activity. T. suecica EPSs from autotrophic cultures showed the strongest effect, since both, adsorption and post-adsorption phases of the VHSV multiplication cycle were affected. In contrast, both, autotrophic and heterotrophic P. cruentum EPSs showed anti-VHSV activity only after the adsorption phase. These results pave the way to use these EPSs to fight VHSV infections, and animate to evaluate the EPS antiviral activity against other viral pathogens relevant to the aquaculture industry. [ABSTRACT FROM AUTHOR]

Background: Autotrophic carbon fixation is the primary route through which organic carbon enters the biosphere, and it is a key step in the biogeochemical carbon cycle. The Calvin–Benson–Bassham pathway, which is predominantly found in plants, algae, and some bacteria (mainly cyanobacteria), was previously considered to be the sole carbon-fixation pathway. However, the discovery of a new carbon-fixation pathway in sulfurous green bacteria almost two decades ago encouraged further research on previously overlooked ancient carbon-fixation pathways in taxonomically and phylogenetically distinct microorganisms. Aim of Review: In this review, we summarize the six known natural carbon-fixation pathways and outline the newly proposed additions to this list. We also discuss the recent achievements in synthetic carbon fixation and the importance of the metabolism of thermophilic microorganisms in this field. Key Scientific Concepts of Review: Currently, at least six carbon-fixation routes have been confirmed in Bacteria and Archaea. Other possible candidate routes have also been suggested on the basis of emerging “omics” data analyses, expanding our knowledge and stimulating discussions on the importance of these pathways in the way organisms acquire carbon. Notably, the currently known natural fixation routes cannot balance the excessive anthropogenic carbon emissions in a highly unbalanced global carbon cycle. Therefore, significant efforts have also been made to improve the existing carbon-fixation pathways and/or design new efficient in vitro and in vivo synthetic pathways.

Carbon circulation on Earth. Anthropogenic and natural carbon emissions and carbon sequestration routes. [Display omitted] • Carbon is often negatively associated with the anthropogenic emissions of greenhouse gases and, consequently, with environmental issues such as global warming. However, carbon is an element of paramount importance for life and ecological processes. • The knowledge of carbon fixation cycles, in addition to the ecological and evolutionary studies on the emergence of the first beings that inhabited Earth and metabolized carbon, provides a detailed understanding of the enzymes and important intermediaries involved in these cycles. • The central carbon metabolizing enzymes can be used for a variety of purposes; artificial CO 2 fixation pathways can be designed and implemented in suitable host organisms; new solutions are possible for manipulating carbon fixation pathways and increasing their final yields. • The multidisciplinary integration of omics, synthetic biology, molecular biology, and biochemistry can enable the scientific community to describe new carbon fixation pathways and predict important routes and enzymes involved in these processes. This integration may further provide guidance for overcoming the limitations of natural carbon fixation pathways and allow the development of biotechnological applications. • Investigating thermophilic microorganisms is crucial for understanding many evolutionary events. These microorganisms are investigated extensively for developing biotechnological applications because of their metabolic diversity. • In addition to the six well-known natural carbon fixation pathways, the development of omics and systems biology has spearheaded the discovery of new natural and synthetic pathways for carbon metabolism. Autotrophic carbon fixation is the primary route through which organic carbon enters the biosphere, and it is a key step in the biogeochemical carbon cycle. The Calvin–Benson–Bassham pathway, which is predominantly found in plants, algae, and some bacteria (mainly cyanobacteria), was previously considered to be the sole carbon-fixation pathway. However, the discovery of a new carbon-fixation pathway in sulfurous green bacteria almost two decades ago encouraged further research on previously overlooked ancient carbon-fixation pathways in taxonomically and phylogenetically distinct microorganisms. In this review, we summarize the six known natural carbon-fixation pathways and outline the newly proposed additions to this list. We also discuss the recent achievements in synthetic carbon fixation and the importance of the metabolism of thermophilic microorganisms in this field. Currently, at least six carbon-fixation routes have been confirmed in Bacteria and Archaea. Other possible candidate routes have also been suggested on the basis of emerging "omics" data analyses, expanding our knowledge and stimulating discussions on the importance of these pathways in the way organisms acquire carbon. Notably, the currently known natural fixation routes cannot balance the excessive anthropogenic carbon emissions in a highly unbalanced global carbon cycle. Therefore, significant efforts have also been made to improve the existing carbon-fixation pathways and/or design new efficient in vitro and in vivo synthetic pathways. [ABSTRACT FROM AUTHOR]

Electrical instruments are an integral part of human life resulting in a vast electronic waste generation (74.7 Mt by 2030), threatening human life and the environment due to its hazardous nature. Therefore, proper e-waste management is a necessity. Currently, bio-metallurgy is a sustainable process and an emerging research field. Simultaneous leaching of metals using two groups of indigenous heterotrophs and autotrophs was an exciting work done in this study. Bioleaching experiments using pre-adapted cultures were investigated at three e-waste densities: 5, 10, and 15 g/L. Statistical analysis was done using two-way ANOVA. Copper (93%), zinc (21.5%), and nickel (10.5%) had the highest recovery efficiencies. There was a significant difference between copper, nickel, tin, and zinc concentrations and the bacterial group (P < 0.05); Iron-oxidizing bacteria showed the most weight decrease and recovered 46–47% of total metals, mainly copper and nickel, while sulfur oxidizers were more capable of zinc leaching. The heterotrophs solubilized tin preferably and substantially decreased e-waste weight. Using heterotrophs alongside autotrophs is proposed to promote metal recovery. [ABSTRACT FROM AUTHOR]

Microalgae represent a promising solution in addressing the impacts associated with the current agricultural and manufacturing practices which are causing irreparable environmental damage. Microalgae have considerable biosynthetic potential, being a rich source of lipids, proteins, and high-value compounds. Under the scope of the H2020-BBI MULTI-STR3AM project, an innovative large-scale production system of valuable commodities for the food, feed, and fragrance sectors is being developed on the basis of microalgae, reducing costs, increasing the scale of production, and boosting value chain sustainability. In this work, we aimed to create a process model that can mimic an industrial plant to estimate mass and energy balances, optimize scheduling, and calculate production costs for a large-scale plant. Three autotrophic microalgae strains (Nannochloropsis sp., Dunaliella sp. and Spirulina sp.) were considered for this assessment, as well as the use of locally sourced CO2 (flue gas). The developed process model is a useful tool for obtaining the data required for techno-economic analysis (TEA) and life cycle assessment (LCA) of industrial biorefinery-based processes. Nannochloropsis sp. was the most economic option, whereas Dunaliella sp. was the most expensive strain to produce due to its lower productivity. Preliminary environmental assessments of the climate change impact category revealed that water recirculation and the use of flue gas could lead to values of 5.6, 10.6, and 9.2 kgCO2eq·kgAFDW−1 for Nannochloropsis sp., Dunaliella sp., and Spirulina sp., respectively, with electricity and NaCl as the main contributors. The obtained data allow for the quantification of the production costs and environmental impacts of the microalgal biomass fractions produced, which will be fundamental for future comparison studies and in determining if they are higher or lower than those of the replaced products. The process model developed in this work provides a useful tool for the evaluation and optimization of large-scale microalgae production systems. [ABSTRACT FROM AUTHOR]

Chloroplasts are cellular organelles specific to plants, containing pigments, including chlorophyll, necessary for photosynthesis. Our short paper is a discussion of cases of chloroplast-animal cell endosymbiosis, as well as the potential applications of chloroplast transfer to animals, something that has not yet been accomplished by the research groups involved in this challenge. [ABSTRACT FROM AUTHOR]

Microalgae represent a promising solution in addressing the impacts associated with the current agricultural and manufacturing practices which are causing irreparable environmental damage. Microalgae have considerable biosynthetic potential, being a rich source of lipids, proteins, and high-value compounds. Under the scope of the H2020-BBI MULTI-STR3AM project, an innovative large-scale production system of valuable commodities for the food, feed, and fragrance sectors is being developed on the basis of microalgae, reducing costs, increasing the scale of production, and boosting value chain sustainability. In this work, we aimed to create a process model that can mimic an industrial plant to estimate mass and energy balances, optimize scheduling, and calculate production costs for a large-scale plant. Three autotrophic microalgae strains (Nannochloropsis sp., Dunaliella sp. and Spirulina sp.) were considered for this assessment, as well as the use of locally sourced CO2 (flue gas). The developed process model is a useful tool for obtaining the data required for techno-economic analysis (TEA) and life cycle assessment (LCA) of industrial biorefinery-based processes. Nannochloropsis sp. was the most economic option, whereas Dunaliella sp. was the most expensive strain to produce due to its lower productivity. Preliminary environmental assessments of the climate change impact category revealed that water recirculation and the use of flue gas could lead to values of 5.6, 10.6, and 9.2 kgCO2eq·kgAFDW−1 for Nannochloropsis sp., Dunaliella sp., and Spirulina sp., respectively, with electricity and NaCl as the main contributors. The obtained data allow for the quantification of the production costs and environmental impacts of the microalgal biomass fractions produced, which will be fundamental for future comparison studies and in determining if they are higher or lower than those of the replaced products. The process model developed in this work provides a useful tool for the evaluation and optimization of large-scale microalgae production systems.

Carbon source serves as a crucial factor for microalgal lipid biosynthesis. The supplied exogenous inorganic or organic carbon affects lipid accumulation in microalgae under stress conditions. However, the impacts of different carbon availability on glycerolipid metabolism, triacylglycerol (TAG) metabolism in particular, still remain elusive in microalgae. Chlamydomonas starchless mutant BAFJ5 has emerged as a model system to study TAG metabolism, due to its property of hyper-accumulating TAG. In this study, the glycerolipidomic response of the starchless BAFJ5 to high light and nitrogen-deprived (HL-N) stress was deciphered in detail to distinguish glycerolipid metabolism under three carbon supply regimes. The results revealed that the autotrophically and mixotrophically grown BAFJ5 cells aerated with air containing 2% CO2 presented similar changes in growth, photosynthetic activity, biochemical components, and glycerolipid metabolism under HL-N conditions. But the mixotrophically grown BAFJ5 aerated with air containing 0.04% CO2 exhibited more superior accumulation in TAG, which was esterified with a significantly higher proportion of C18:1n9 and prominently the lower proportions of polyunsaturated fatty acids. In addition, these cells increased the relative levels of C18:2n6 in the membrane lipids, i.e., monogalactosyldiacylglycerol (MGDG) and digalactosyldiacylglycerol (DGDG), in priority, and decreased that of C18:3n3 and C18:4n3 in the betaine lipid, N , N , N -trimethylhomoserine diacylglycerol (DGTS), subsequently, to adapt to the HL-N stress conditions, compared to the cells under the other two conditions. Thus, it was suggested that C. reinhardtii starchless mutant appeared to present distinct metabolism for TAG biosynthesis involving membrane lipid remodeling under distinct carbon supply regimes. This study provides insights into how the different carbon supply regimes affect lipid metabolism in Chlamydomonas starchless cells, which will benefit the optimized production of storage lipids in microalgae. [ABSTRACT FROM AUTHOR]

BACKGROUND Microalgae biomass is regarded as one of the most promising renewable biomass energy resources with the potential as a sustainable biological climate change mitigation agent, raw material for commercially valuable products and fossil fuel replacement. In view of that, this study isolated, identified and evaluated the potential of an indigenous freshwater green microalga strain, Tetradesmus obliquus UJEA_AD, collected from Emmarentia Dam, Johannesburg, South Africa. RESULTS: Morphological analysis and sequencing of the rbcL biomarker aided in identification of the isolate as T. obliquus. Tetradesmus obliquus UJEA_AD was further batch‐cultivated autotrophically in BG11 medium and examined for biomass accumulation, CO2 biofixation rate, biochemical composition and fatty acid production. The results showed a maximum biomass accumulation of 2.78 ± 0.019 g L−1 with biomass productivity of 0.153 ± 0.001 g L−1 day−1 and specific growth rate of 0.13 ± 0.004 day–1 as well as CO2 biofixation rate of 0.265 ± 0.002 gCO2 L−1 day−1. The biochemical data of the isolate revealed 27.17% ± 0.021% carbohydrate, 38.00% ± 0.15% protein and 31.2% ± 0.80% lipids; with primary fatty acids such as palmitic acid (34.26% ± 2.02%), linolenic acid (18.08 ± 5.29), trans‐13‐octadecenoic acid (12.32 ± 0.92) and phytol, 2‐methylbutanoate (12.31 ± 1.02). CONCLUSION: These findings suggest that T. obliquus UJEA_AD is capable of producing bioproducts of economic value with an excellent CO2 bio‐mitigation potential when cultivated at optimum conditions in an autotrophic mode. Moreover, lipid extracted from T. obliquus UJEA_AD met the biodiesel quality standards of the USA and EU, making the isolate a promising commercial biodiesel feedstock. © 2021 The Authors. Journal of Chemical Technology and Biotechnology published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry (SCI). [ABSTRACT FROM AUTHOR]

Carbon source serves as a crucial factor for microalgal lipid biosynthesis. The supplied exogenous inorganic or organic carbon affects lipid accumulation in microalgae under stress conditions. However, the impacts of different carbon availability on glycerolipid metabolism, triacylglycerol (TAG) metabolism in particular, still remain elusive in microalgae. Chlamydomonas starchless mutant BAFJ5 has emerged as a model system to study TAG metabolism, due to its property of hyper-accumulating TAG. In this study, the glycerolipidomic response of the starchless BAFJ5 to high light and nitrogen-deprived (HL-N) stress was deciphered in detail to distinguish glycerolipid metabolism under three carbon supply regimes. The results revealed that the autotrophically and mixotrophically grown BAFJ5 cells aerated with air containing 2% CO2 presented similar changes in growth, photosynthetic activity, biochemical components, and glycerolipid metabolism under HL-N conditions. But the mixotrophically grown BAFJ5 aerated with air containing 0.04% CO2 exhibited more superior accumulation in TAG, which was esterified with a significantly higher proportion of C18:1n9 and prominently the lower proportions of polyunsaturated fatty acids. In addition, these cells increased the relative levels of C18:2n6 in the membrane lipids, i.e., monogalactosyldiacylglycerol (MGDG) and digalactosyldiacylglycerol (DGDG), in priority, and decreased that of C18:3n3 and C18:4n3 in the betaine lipid, N,N,N-trimethylhomoserine diacylglycerol (DGTS), subsequently, to adapt to the HL-N stress conditions, compared to the cells under the other two conditions. Thus, it was suggested that C. reinhardtii starchless mutant appeared to present distinct metabolism for TAG biosynthesis involving membrane lipid remodeling under distinct carbon supply regimes. This study provides insights into how the different carbon supply regimes affect lipid metabolism in Chlamydomonas starchless cells, which will benefit the optimized production of storage lipids in microalgae.

Soil respiration (Rs) is the second largest carbon (C) flux to the atmosphere and our understanding of how Rs and its components shift with plant-community composition remains an important question. We used high-frequency soil respiration measurements and root exclusion to evaluate how Rs, autotrophic respiration (Ra) and heterotrophic respiration (Rh) vary between a semi-arid perennial shrub community and annual invasive community. Over two growing seasons, total Rs was 40% higher under annual vegetation compared to shrubs. Partitioning revealed consistently higher Ra under annual vegetation which accounted for most of the difference in Rs. Under annual vegetation, Ra increased soon after the first rain events and remained high despite cooling temperatures while shrub Ra increased only when soil temperature began to warm up. The Rh rates were similar between vegetation types when daily soil temperatures were lower than 20 °C. As soil temperatures increased and soil moisture dropped below 10%, Rh was consistently higher under annual vegetation than shrubs. Seasonal dynamics of Rs and Rh were best modeled with an interaction term between soil moisture and temperature with significantly different model parameters for each vegetation type. Differences in the timing and magnitude of Rs and Ra between vegetation types are consistent with phenological differences between shrubs and annuals. Under annuals, larger Rh at high temperatures suggests that expansion of annual vegetation and future hotter and drier conditions could lead to greater C losses from this semi-arid shrub system. [ABSTRACT FROM AUTHOR]

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Autotrophic nitrate reduction coupled to Fe(II) oxidation is an important nitrate removal process in anoxic aquifers. However, it remains unknown how changes of O2 and carbon availability influence the community structure of nitrate-reducing Fe(II)-oxidizing (NRFeOx) microbial assemblages and what the genomic traits of these NRFeOx key players are. We compared three metabolically distinct denitrifying assemblages, supplemented with acetate, acetate/Fe(II) or Fe(II), enriched from an organic-poor, pyrite-rich aquifer. The presence of Fe(II) promoted the growth of denitrifying Burkholderiaceae spp. and an unclassified Gallionellaceae sp. This Gallionellaceae sp. was related to microaerophilic Fe(II) oxidizers; however, it did not grow under microoxic conditions. Furthermore, we explored a metagenome and 15 metagenome-assembled genomes from an aquifer-originating, autotrophic NRFeOx culture. The dominant Gallionellaceae sp. revealed the potential to oxidize Fe(II) (e.g. cyc2), fix CO2 (e.g. rbcL) and perform near-complete denitrification leading to N2O formation (e.g. narGHJI , nirK/S and norBC). In addition, Curvibacter spp. Methyloversatilis sp. and Thermomonas spp. were identified as novel putative NRFeOx taxa. Our findings provide first insights into the genetic traits of the so far only known autotrophic NRFeOx culture originating from an organic-poor aquifer, providing the genomic basis to study mechanisms of nitrate removal in organic-poor subsurface ecosystems. [ABSTRACT FROM AUTHOR]

Desulfotomaculum gibsoniae is a mesophilic member of the polyphyletic spore-forming genus Desulfotomaculum within the family Peptococcaceae. This bacterium was isolated from a freshwater ditch and is of interest because it can grow with a large variety of organic substrates, in particular several aromatic compounds, short-chain and medium-chain fatty acids, which are degraded completely to carbon dioxide coupled to the reduction of sulfate. It can grow autotrophically with H2 + CO2 and sulfate and slowly acetogenically with H2 + CO2, formate or methoxylated aromatic compounds in the absence of sulfate. It does not require any vitamins for growth. Here, we describe the features of D. gibsoniae strain Groll(T) together with the genome sequence and annotation. The chromosome has 4,855,529 bp organized in one circular contig and is the largest genome of all sequenced Desulfotomaculum spp. to date. A total of 4,666 candidate protein-encoding genes and 96 RNA genes were identified. Genes of the acetyl-CoA pathway, possibly involved in heterotrophic growth and in CO2 fixation during autotrophic growth, are present. The genome contains a large set of genes for the anaerobic transformation and degradation of aromatic compounds, which are lacking in the other sequenced Desulfotomaculum genomes.

Recent advances in the partitioning of autotrophic from heterotrophic respiration processes in soils in conjunction with new high temporal resolution soil respiration data sets offer insights into biotic and environmental controls of respiration. Besides temperature, many emerging controlling factors have not yet been incorporated into ecosystem-scale models. We synthesize recent research that has partitioned soil respiration into its process components to evaluate effects of nitrogen, temperature and photosynthesis on autotrophic flux from soils at the ecosystem level. Despite the widely used temperature dependence of root respiration, gross primary productivity (GPP) can explain most patterns of ecosystem root respiration (and to some extent heterotrophic respiration) at within-season time-scales. Specifically, heterotrophi crespiration is influenced by a seasonally variable supply of recent photosynthetic products in the rhizosphere. The contribution of stored root carbon (C) to root respiratory fluxes also varied seasonally, partially decoupling the proportion of photosynthetic C driving root respiration. In order to reflect recent insights, new hierarchical models, which incorporate root respiration as a primary function of GPP and which respond to environmental variables by modifying Callocation belowground, are needed for better prediction of future ecosystem C sequestration.

This paper investigated the cumulative impact of salinity, carbon source (glycerol and glucose) and photoperiod on the cultivation of the microalga Phaeodactylum tricornutum in mixotrophic growth in pure air supplied photobioreactors aiming at biomass output and lipid content enhancement for increased biodiesel productivity. For that, Phaeodactylum tricornutum was grown for 18 and 20 days in modified F2 medium which was supplied in the beginning of the culture, and with daily addition of glycerol (0.1 M) or glucose (0.05 M); salinity at 15 and 30‰, with the luminosity of 165 μmols photons m−2s−2 for 24 h day−1 or partial 12 h day−1. Biomass production was registered, total lipids quantified with the Bligh and Dyer methodology, and the lipids' drops observed with Nile Red staining. Regarding salinity, a value of 15‰ led to the highest microalgae growth. Glycerol 0.1 M was the carbon source which provided the best assimilation by the microalgae, reaching up to 1.3 g L−1 of biomass. The 24 h-illumination photoperiod with glycerol in mixotrophic cultivation led to 338.97 mg L−1 of lipids, which was roughly 80% higher than the lipid content obtained with autotrophic growth. In conclusion, the most effective conditions were glycerol 0.1 M (carbon source), 15‰ salinity, and 24 h-illumination. Image 1 • Salinity, carbon source and photoperiod effect on microalgae growth. • No CO 2 injection on microalgae mixotrophic cultivation outcome. • Lipids identification with Nile Red staining. • Glycerol and glucose comparative analysis on lipid production. • Glycerol addition produced 80% more lipid content than autotrophic growth. [ABSTRACT FROM AUTHOR]

The sustainable production of chemicals from non-petrochemical sources is one of the greatest challenges of our time. CO2 release from industrial activity is not environmentally friendly yet provides an inexpensive feedstock for chemical production. One means of addressing this problem is using acetogenic bacteria to produce chemicals from CO2, waste streams, or renewable resources. Acetogens are attractive hosts for chemical production for many reasons: they can utilize a variety of feedstocks that are renewable or currently waste streams, can capture waste carbon sources and covert them to products, and can produce a variety of chemicals with greater carbon efficiency over traditional fermentation technologies. Here we investigated the metabolism of Clostridium ljungdahlii, a model acetogen, to probe carbon and electron partitioning and understand what mechanisms drive product formation in this organism. We utilized CRISPR/Cas9 and an inducible riboswitch to target enzymes involved in fermentation product formation. We focused on the genes encoding phosphotransacetylase (pta), aldehyde ferredoxin oxidoreductases (aor1 and aor2), and bifunctional alcohol/aldehyde dehydrogenases (adhE1 and adhE2) and performed growth studies under a variety of conditions to probe the role of those enzymes in the metabolism. Finally, we demonstrated a switch from acetogenic to ethanologenic metabolism by these manipulations, providing an engineered bacterium with greater application potential in biorefinery industry.

In streams, gross primary production (GPP) and ecosystem respiration (ER) (i.e., stream metabolism) control the transport and fate of nutrients and organic carbon and vice versa. The importance of short-term and local factors in driving these processes is well known in the literature. However, little information exists regarding the extent of temporal variability of stream metabolism and how both local physicochemical and broad-scale climatic drivers affect this variability. We used 7 years of field data from an open-canopy headwater stream ecosystem in the southwestern United States to quantify the extent of seasonal and inter-annual variability in stream metabolism (GPP, ER, and net ecosystem production [NEP]) and to assess if temporal variation in these processes was related to the magnitude of snowmelt runoff. In spring, seasonal mean ER (p = 0.025, r 2 = 0.67) and NEP (p = 0.004, r 2 = 0.83) were more strongly related to discharge (Q) than GPP (p = 0.19, r 2 = 0.32), potentially because of an increased influx of nutrients and organic carbon during years with higher snowmelt runoff. There were no strong relationships between seasonal mean GPP and Q , light, temperature, turbidity, and specific conductance (p ≥ 0.27, r 2 ≤ 0.18). Our long-term data revealed unanticipated shifts from autotrophic to heterotrophic status within and across years. However, this variability was not strongly associated with environmental factors at either local (i.e., Q or photosynthetically-active radiation) or global (i.e., El Niño-Southern Oscillation) scales. Previous paradigms hold that local attributes dictated by geographic and landscape positioning (e.g., light and temperature regimes) control the trophic status of streams, but our findings suggest that complex combinations of spatiotemporally-variable factors, such as snow accumulation and melting, and their role in connecting terrestrial and aquatic ecosystems can lead to substantial within-stream variation in autotrophic or heterotrophic status. [ABSTRACT FROM AUTHOR]

For over two decades, sulfate reduction with ammonium oxidation (SRAO) had been reported from laboratory experiments. SRAO was considered an autotrophic process mediated by anammox bacteria, in which ammonium as electron donor was oxidized by the electron acceptor sulfate. This process had been attributed to observed transformations of nitrogenous and sulfurous compounds in natural environments. Results obtained differed largely for the conversion mole ratios (ammonium/sulfate), and even the intermediate and final products of sulfate reduction. Thus, the hypothesis of biological conversion pathways of ammonium and sulfate in anammox consortia is implausible. In this study, continuous reactor experiments (with working volume of 3.8L) and batch tests were conducted under normal anaerobic (0.2 ≤ DO > 0.5 mg/L) / strict anaerobic (DO > 0.2 mg/L) conditions with different biomass proportions to verify the SRAO phenomena and identify possible pathways behind substrate conversion. Key findings were that SRAO occurred only in cases of high amounts of inoculant biomass under normal anaerobic condition, while absent under strict anaerobic conditions for same anammox consortia. Mass balance and stoichiometry were checked based on experimental results and the thermodynamics proposed by previous studies were critically discussed. Thus anammox bacteria do not possess the ability to oxidize ammonium with sulfate as electron acceptor and the assumed SRAO could, in fact, be a combination of aerobic ammonium oxidation, anammox and heterotrophic sulfate reduction processes. [ABSTRACT FROM AUTHOR]

Overuse of the fossil fuels to fulfill existing energy requirements has generated various environmental problems like global warming. Emergence of environmental issues due to burning of the fossil fuel resources has provoked researchers to explore alternative sources of fuel. In this scenario, microalgal biofuels could present a promising alternative fuel if produced cost‐effectively without competing for freshwater resources and arable land. Aim of the present study was to grow microalgae by employing lignocellulosic waste for production of lipids. Scenedesmus dimorphus NT8c was chosen based on its ability to tolerate heat, rapid growth, and ease of harvesting by overnight settling. Biochemical composition and growth parameters of microalgae were analyzed when cultivated mixotrophically on sugarcane bagasse hydrolysate, a low‐value agricultural by‐product, that is, currently underutilized. Despite a slight increase in turbidity in the medium, S. dimorphus NT8c cultures raised mixotrophically in 5 g/L sugarcane bagasse hydrolysate displayed significantly higher growth rates compared to photoautotrophic cultivation with an overall biomass productivity of 119.5 mg L d−1, protein contents of 34.82% and fatty acid contents of 15.41%. Thus, microalgae cultivated mixotrophically are capable of photosynthesizing while metabolizing and assimilating organic carbon, significant increases of biomass and lipid productivity can be achieved. However, high supplementation with organic carbon can result in unfavorable levels of turbidity and bacterial growth, reducing microalgal biomass productivity. [ABSTRACT FROM AUTHOR]

The effects of autotrophic, heterotrophic, and mixotrophic conditions were examined on micro green alga Dunaliella salina (UTEX 200) in terms of cell growth, total chlorophyll concentration, and lipid production. Results revealed a minimum growth rate of microalgae in the heterotrophic condition which is not recommended for D. salina. When the cells were cultured in mixotrophic conditions containing different concentrations of acetate or glucose, in 100 mM acetate or 60 mM glucose, the highest levels of growth rate and lipid production were obtained compared with autotrophic culture; however, the chlorophyll concentration decreased. Moreover, a significant correlation between ROS production and lipid synthesis was observed. When the combined acetate and glucose was added to the culture, no increase in growth rate and lipid synthesis was observed. This might be due to substrate inhibition. In the presence of glucose, the acidification of culture and bleaching occurred. Results indicated that lipid production is not affected by acidified conditions. In general, our results confirmed that mixotrophic culture with 100 mM acetate or 60 mM glucose is the most appropriate culture for D. salina concerning high lipid production as well as high growth rate in the shortest period of time. [ABSTRACT FROM AUTHOR]

Separating ecosystem and soil respiration into autotrophic and heterotrophic component sources is necessary for understanding how the net ecosystem exchange of carbon (C) will respond to current and future changes in climate and vegetation. Here, we use an isotope mass balance method based on radiocarbon to partition respiration sources in three mature black spruce forest stands in Alaska. Radiocarbon (Δ14C) signatures of respired C reflect the age of substrate C and can be used to differentiate source pools within ecosystems. Recently-fixed C that fuels plant or microbial metabolism has Δ14C values close to that of current atmospheric CO2, while C respired from litter and soil organic matter decomposition will reflect the longer residence time of C in plant and soil C pools. Contrary to our expectations, the Δ14C of C respired by recently excised black spruce roots averaged 14% greater than expected for recently fixed photosynthetic products, indicating that some portion of the C fueling root metabolism was derived from C storage pools with turnover times of at least several years. The Δ14C values of C respired by heterotrophs in laboratory incubations of soil organic matter averaged 60% higher than the contemporary atmosphere Δ14CO2, indicating that the major contributors to decomposition are derived from a combination of sources consistent with a mean residence time of up to a decade. Comparing autotrophic and heterotrophic Δ14C end members with measurements of the Δ14C of total soil respiration, we calculated that 47-63% of soil CO2 emissions were derived from heterotrophic respiration across all three sites. Our limited temporal sampling also observed no significant differences in the partitioning of soil respiration in the early season compared with the late season. Future work is needed to address the reasons for high Δ14C values in root respiration and issues of whether this method fully captures the contribution of rhizosphere respiration. © 2005 Blackwell Publishing Ltd.

Abstract Background The light/dark cycle is one of the most important factors affecting the microalgal growth and lipid accumulation. Biomass concentration and lipid productivity could be enhanced by optimization of light/dark cycles, and this is considered an effective control strategy for microalgal cultivation. Currently, most research on effects of light/dark cycles on algae is carried out under autotrophic conditions and little information is about the effects under mixotrophic cultivation. At the same time, many studies related to mixotrophic cultivation of microalgal strains, even at large scale, have been performed to obtain satisfactory biomass and lipid production. Therefore, it is necessary to investigate cellular metabolism under autotrophic and mixotrophic conditions at different light/dark cycles. Even though microalgal lipid production under optimal environmental factors has been reported by some researchers, the light/dark cycle and temperature are regarded as separate parameters in their studies. In practical cases, light/dark cycling and temperature variation during the day occur simultaneously. Therefore, studies about the combined effects of light/dark cycles and temperature variation on microalgal lipid production are of practical value, potentially providing significant guidelines for large-scale microalgal cultivation under natural conditions. Results In this work, cell growth and lipid accumulation of an oleaginous microalgal mutant, Scenedesmus sp. Z-4, were investigated at five light/dark cycles (0 h/24 h, 8 h/16 h, 12 h/12 h, 16 h/8 h, and 24 h/0 h) in batch culture. The results showed that the optimal light/dark cycle was 12 h/12 h, when maximum lipid productivity rates of 56.8 and 182.6 mg L−1 day−1 were obtained under autotrophic and mixotrophic cultivation, respectively. Poor microalgal growth and lipid accumulation appeared in the light/dark cycles of 0 h/24 h and 24 h/0 h under autotrophic condition. Prolonging the light duration was unfavorable to the production of chlorophyll a and b, which was mainly due to photooxidation effect. Polysaccharide was converted into lipid and protein when the light irradiation time increased from 0 to 12 h; however, further increasing irradiation time had a negative effect on lipid accumulation. Due to the dependence of autotrophically cultured cells on light energy, the light/dark cycle has a more remarkable influence on cellular metabolism under autotrophic conditions. Furthermore, the combined effects of temperature variation and light/dark cycle of 12 h/12 h on cell growth and lipid accumulation of microalgal mutant Z-4 were investigated under mixotrophic cultivation, and the results showed that biomass was mainly produced at higher temperatures during the day, and a portion of biomass was converted into lipid under dark condition. Conclusions The extension of irradiation time was beneficial to biomass accumulation, but not in favor of lipid production. Even though effects of light/dark cycles on autotrophic and mixotrophic cells were not exactly the same, the optimal lipid productivities of Scenedesmus sp. Z-4 under both cultivation conditions were achieved at the light/dark of 12 h/12 h. This may be attributed to its long-term acclimation in natural environment. By combining temperature variation with optimal light/dark cycle of 12 h/12 h, this study will be of great significance for practical microalgae-biodiesel production in the outdoor conditions.

The successful ex vitro establishment of Dendrobium plantlets raised in vitro determines the quality of the end product (cut flowers or potted plants) in commercial production for economic gain. When in vitro Dendrobium plantlets are transplanted from the culture room to greenhouse conditions, they may desiccate or wilt rapidly and can die as a result of changes in the environment, unless substantial precautions are taken to adapt plantlets to a new environment. The acclimatization of in vitro-grown Dendrobium plantlets to an ex vitro environment by gradually weaning them towards ambient relative humidity and light levels facilitates better survival of young and physiologically sensitive plantlets. Dendrobium plantlets raised in vitro must thus undergo a period of acclimatization or transitional development to correct anatomical abnormalities and to enhance their physiological performance to ensure survival under ex vitro conditions. The most common approach to improve the survival of Dendrobium plantlets upon transfer to an ex vitro environment is their gradual adaptation to that environment. Under such conditions, plants convert rapidly from a heterotrophic or photomixotrophic state to an autotrophic growth, develop a fully functional root system, and better control their stomatal and cuticular transpiration. Gradual adaptation is carried out in a greenhouse by decreasing relative humidity using fog or mist chambers and by increasing light intensity using shading techniques. This review details the acclimatization and ex vitro survival of Dendrobium plants produced in vitro. This advice is also useful for other orchids.

Synthetic autotrophs can serve as chassis strains for bioproduction from CO 2 as a feedstock to take measures against the climate crisis. Integration of the Calvin-Benson-Bassham (CBB) cycle into the methylotrophic yeast Komagataella phaffii ( Pichia pastoris ) enabled it to use CO 2 as the sole carbon source. The key enzyme in this cycle is ribulose-1,5-bisphosphate carboxylase/oxygenase (RuBisCO) catalyzing the carboxylation step. However, this enzyme is error prone to perform an oxygenation reaction leading to the production of toxic 2-phosphoglycolate. Native autotrophs have evolved different recycling pathways for 2-phosphoglycolate. However, for synthetic autotrophs, no information is available for the existence of such pathways. Deletion of CYB2 in the autotrophic K. phaffii strain led to the accumulation of glycolate, an intermediate in phosphoglycolate salvage pathways, suggesting that such a pathway is enabled by native K. phaffii enzymes. 13 C tracer analysis with labeled glycolate indicated that the yeast pathway recycling phosphoglycolate is similar to the plant salvage pathway. This orthogonal yeast pathway may serve as a sensor for RuBisCO oxygenation, and as an engineering target to boost autotrophic growth rates in K. phaffii ., Competing Interests: None declared., (© The Author(s) 2023. Published by Oxford University Press on behalf of FEMS.)

• Co-cultivation of two microalgae species (Ettlia and Chlorella) was tested. • Co-cultivation returned the maximum biomass productivity at 1:08 inoculation ratio. • Biomass productivity in mono-culture was 0.26 g L−1 day−1. • Biomass productivity in co-cultivation was 0.70 g L−1 day−1. • Co-cultivation was more effective in mixotrophic condition than autotrophic. This study aimed to investigate the symbiotic relationship of two freshwater microalgae species, Ettlia sp. and Chlorella sp. HS-2 to improve biomass productivity. The species were co-cultivated autotrophically under the inoculation ratios (Chlorella / Ettlia) of 1:01, 1:04, 1:08, and 1:16. The performance of co-cultivation was compared with monoculture. It found that the co-cultivation returned higher biomass productivity (P < 0.05) than the monoculture under all inoculation ratios. The highest biomass productivity of 0.70 ± 0.02 g L−1 day−1 was achieved with an inoculation ratio of 1:08. The biomass productivity further increased to 0.74 ± 0.06 g L−1 day−1 by switching the cultivation mode to the mixotrophic condition. The biomass productivity of mixotrophic co-cultivation was higher P < 0.05 (0.74 ± 0.06 g L−1 day−1) than the mixotrophic mono-culture of Ettlia (0.41 ± 0.06 g L−1 day−1) but equal to mixotrophic mono-culture of Chlorella. FACS analysis revealed that the biomass obtained after co-cultivation contained 81% of Chlorella cells. In biochemical composition, co-cultivation (autotrophic) biomass contained protein 41%, carbohydrates 33%, lipids 11%, and pigments 2% of dry cell weight. The major fatty acids produced in the co-cultivation were C16–C18, which are favorable for biodiesel production. It is concluded that the co-cultivation is more favorable than the monoculture to obtain high biomass productivity and stable biomass composition. [ABSTRACT FROM AUTHOR]

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Biofloc systems are microbial mature environments that are potentially less conducive disease outbreaks. We hypothesized that the way in which biofloc microbial communities are managed determines the level of disease protection. To investigate such hypothesis, Litopenaeus vannamei post-larvae were cultured for 21 days in biofloc environments created by different water management procedures. Five different types of bioflocs were created: autotrophic bioflocs without probiotics, autotrophic bioflocs with probiotics, heterotrophic bioflocs without probiotics, heterotrophic bioflocs with probiotics, and a flow-through system as a control. Heterotrophic bioflocs were obtained by daily addition of carbon (glucose) at an estimated C/N ratio of 18 throughout the experiment. For autotrophic bioflocs this input of carbon was applied only to start up the system and upon appearance of bioflocs (TSS > 100 mg L−1) and a drop in total ammonium nitrogen concentration below 0.05 mg L−1, carbon dosing was stopped. Bioflocs cultured with addition of probiotics received a 0.5 ppm dose every 48 hours. After 21-d culture period, a 96 h challenge test was performed with a Vibrio parahaemolyticus strain known to cause AHPND. For each biofloc type, this challenge was performed in three different approaches: 1- Shrimp were taken out of their biofloc tanks and challenged by applying new seawater; 2-Shrimp from biofloc tanks were challenged in their respective biofloc suspensions; and 3- Non-experimental shrimp, randomly selected from a recirculation (RAS) system were challenged in the types of biofloc suspensions. Mortality was high when shrimp were challenged in new seawater, independent of treatment. When challenged in their respective biofloc suspensions shrimp survival was the highest in heterotrophic bioflocs with and without probiotic supplementation and the autotrophic bioflocs with probiotics, whereas shrimp survival in autotrophic bioflocs without probiotics was 50%. These results were similar when non-experimental shrimp originating from a RAS system were challenged in these biofloc suspensions. Taken together, results suggest that bioflocs as such can decrease the impact of a Vibrio parahaemolyticus challenge and that this protection depends on the operational parameters of the biofloc system. Moreover, probiotics can be used to complement the protective effect of bioflocs. This information reinforces the importance of microbial community management as a tool to reduce the risk of disease and establish highly biosecure systems. • Two operational parameters of biofloc system were evaluated based on carbon input and probiotic application. • Litopenaeus vannamei post-larvae previously cultured in the two types of bioflocs were challenged with Vibrio parahaemolyticus. • Heterotrophic bioflocs showed high survival with and without probiotic supplementation. • The use of probiotics increased the survival in bioflocs operated in an autotrophic way. [ABSTRACT FROM AUTHOR]

Highlights • Light irradiance exhibited variability in growth response based on substrate types. • Each substrate exhibited variability of light requirement for mixotrophic growth. • Continuous light-deficient condition was adequate for effective mixotrophy from glucose. • Acetic acid exhibited better mixotrophic yield at light-sufficient condition. • Variability in photosynthetic-efficiency in mixotrophy dependent on substrate types. Abstract Current research aimed to increase mixotrophic biomass from various organic carbon sources by exploring best light conditions. Three substrates glucose, acetic acid and glycerol were studied for their effects on mixotrophic microalgae cultivation under four light conditions. Light irradiance exhibited variability in growth response and photosynthetic efficiency based on type of substrates used in mixotrophic growth. Each substrate showed variability in light requirements for their effective assimilations. From growth responses, glucose and acetic acid respectively exhibited heterotrophic and mixotrophic (better growth in light) natures. Continuous light-deficient condition was adequate for effective mixotrophic growth as well as energy saving for glucose. However, light-sufficient condition required for effective acetic acid supported mixotrophic growth. Mixotrophic benefits from glycerol and its uptake by Chlorella protothecoides was negligible in all light conditions. Investigation of heterotrophic biomass contribution by various substrates in overall mixotrophic yield, glucose offered maximum approx. 43% contribution. [ABSTRACT FROM AUTHOR]

Aims: Long-duration drought can alter ecosystem plant species composition with subsequent effects on carbon cycling. We conducted a rainfall manipulation field experiment to address the question: how does drought-induced vegetation change, specifically shrub encroachment into grasslands, regulate impacts of subsequent drought on soil CO2 efflux (Rs) and its components (autotrophic and heterotrophic, Ra and Rh)? Methods: We conducted a two-year experiment in Inner Mongolia plateau, China, using constructed steppe communities including graminoids, shrubs and their mixture (graminoid + shrub) to test the effects of extreme-duration drought (60-yr return time) on Rs, Rh and Ra. Results: Our results indicated that extreme-duration drought reduced net primary production, with subsequent effects on Rs, Rh and Ra in all three vegetation communities. There was a larger relative decline in Ra (35–54%) than Rs (30–37%) and Rh (28–35%). Interestingly, we found Rs in graminoids is higher than in shrubs under extreme drought. Meanwhile, Rh declines were largest in the shrub community. Although Ra and Rh both decreased rapidly during drought treatment, Rh recovered quickly after the drought, while Ra did not, limiting the Rs recovery. Conclusions: This study suggests that plant species composition regulates several aspects of soil CO2 efflux response to climate extremes. This regulation may be limited by above- and below-ground net primary production depending on soil water availability. The results of this experiment address a critical knowledge gap in the relationship between soil respiration and plant species composition. With shrub encroachment into grasslands, total soil respiration is reduced and can partly offset the effect of reduction in productivity under drought stress. [ABSTRACT FROM AUTHOR]

The objective of this study was to demonstrate the pH effects on growth, survival, water quality, proximal composition of bioflocs and oxidative stress of Nile tilapia in biofloc technology (BFT) system. Twenty‐five fish (3.68 ± 0.93 g) were distributed in each tank (useful vol. 37.5 L), utilizing treatments with pH 8.3, 7.5 and 6.5 at 60 days. During the experiment, the oxidation of total ammonia was similar among the treatments. However, the NO2−‐N oxidation was slower at pH 6.5 (10.1 ± 1.0 mg/L) compared to pH 7.5 (7.0 ± 0.6 mg/L) and 8.3 (7.1 ± 1.5 mg/L). The final weight was higher for pH 7.5 treatment (44.1 ± 0.9 g) compared to pH 8.3 (37.1 ± 3.9 g), while the pH 6.5 (40.4 ± 4.1 g) was like to the other treatments. Moreover, the survival, daily growth rate and the food conversion rate were not affected by treatments. When evaluating physiological and biochemical parameters, no alterations were detected, therefore, indicating that fish have a good health status. Thus, the present study demonstrates that BFT for a Nile tilapia nursery, utilizing pH 6.5–7.5, promotes the best results in terms of growth, net yield and efficiency. [ABSTRACT FROM AUTHOR]

Abstract Mediterranean coastal aquatic ecosystems are heterogeneous systems covering a wide range of hydrological characteristics. Differences in the hydrological pattern determine the nutrient dynamics and microbial community composition of these habitats. We analysed the composition of the microbial community composition and the factors affecting the predominance of autotrophic (A) or heterotrophic (H) microorganisms in 17 coastal water bodies of the Empordà and Baix Ter wetlands (NE Iberian Peninsula) during mid-summer under severe drought conditions. We sampled three types of water bodies with differences in their water residence time: 6 isolated euhaline basins, 8 oligohaline basins and the estuaries of the three rivers that flood into the area. Our aim was to determine if differences exist in the microbial community structure in Mediterranean coastal water bodies with different residence time under conditions of severe drought or, on the other hand, if the lack of flooding during the summer makes isolated, choked and leaky ecosystems more similar. Isolated basins showed higher values than estuaries for temperature, conductivity and the proportion of nutrients in organic forms. Regarding microbial community composition, microphytoplankton (mainly dinoflagellates) dominated in isolated lagoons, while picoplankton dominated in estuaries. We found no significant differences between oligohaline basins and both estuaries and isolated basins for either physical and chemical variables or microbial community composition. Only the proportion between autotrophic and heterotrophic organisms was lower in oligohaline basins than in isolated ones. We conclude that the estuaries of rivers with measurable flow during the summer differ from lagoons long isolated from any surface water input; similarities that we expected to find between leaky and isolated ecosystems under drought conditions arise in only oligohaline waters with intermediate residence times. [ABSTRACT FROM AUTHOR]

In this study we describe a [15N] stable isotopic labeling study of amino acids in Spirodela polyrhiza (common duckweed) grown under three different light and carbon input conditions which represent unique potential metabolic modes. Plants were grown with a light cycle, either with supplemental sucrose (mixotrophic) or without supplemental sucrose (photoautotrophic) and in the dark with supplemental sucrose (heterotrophic). Labeling patterns, pool sizes (both metabolically active and inactive), and kinetics/turnover rates were estimated for 17 of the proteinogenic amino acids. Estimation of these parameters followed several overall trends. First, most amino acids showed plateaus in labeling patterns of

Bioreduction of nitrate to value-added ammonium is a potentially sustainable strategy to recycle nutrients from wastewater. Here, we have proven the feasibility of the reduction of autotrophic nitrate to ammonium with electrons extracted from Fe(0). Using a Geobacter -dominated anodic biofilm as an inoculum, we achieved nitrate-to-ammonium efficiency up to 90 ± 3% with a nitrate reduction rate of 35 ± 1.3 mg N/d/L. An electron acceptor instead of an inoculum greatly influenced the Fe(0)-dissimilatory nitrate reduction to ammonium (DNRA), where nitrite as the electron acceptor provided an effective selective pressure to enrich Geobacter from initial 5 to 56%. The DNRA repressing denitrification was demonstrated by the reverse tendencies of upregulated nrfA and downregulated nirS gene transcription. This finding provides a new route for autotrophic nitrate removal and recycling from water, which has a broader implication on biogeochemical nitrogen and iron cycling.