370 results on '"haloperoxidase"'
Search Results
2. ¿Presenta la enfermedad de Parkinson una haloenzimopatía?
- Author
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E. Fernández-Espejo
- Subjects
Parkinson's disease ,Halogenative stress ,Haloperoxidase ,Dehalogenase ,Oxyacid ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Resumen: Los estudios en el laboratorio han permitido identificar cambios del metabolismo de halógenos en suero y líquido cefalorraquídeo (LCR) de pacientes con enfermedad de Parkinson, que indican la presencia de «autohalogenación acelerada» del LCR de los pacientes o aumento de haloperoxidasas, en concreto, tiroperoxidasa en sangre y lactoperoxidasa en LCR. Además, se ha detectado un exceso en suero y LCR de algunos derivados halogenados, como proteínas con halogenación avanzada tipo advanced oxidation protein products (AOPP). Estos hechos, «autohalogenación acelerada» e incremento de haloperoxidasas y proteínas AOPP, indican la presencia de estrés halogenativo en la enfermedad de Parkinson. Además, un derivado halogenado, la 3-yodo-L-tirosina, muestra toxicidad parkinsoniana en modelos experimentales, pues se ha observado que induce agregados de α-sinucleína y daño de las neuronas de dopamina en cerebro e intestino en ratones. La hipótesis que se maneja es que en la enfermedad de Parkinson existe un exceso halogenativo, relacionado con una alteración haloenzimática de síntesis o degradación de oxiácidos de halógenos y sus derivados halogenados. Este estrés halogenativo se relacionaría con el daño del sistema nervioso. Abstract: Laboratory studies identified changes in the metabolism of halogens in the serum and cerebrospinal fluid (CSF) of patients with Parkinson's disease, which indicates the presence of «accelerated self-halogenation» of CSF and/or an increase in haloperoxidases, specifically serum thyroperoxidase and CSF lactoperoxidase. Furthermore, an excess of some halogenated derivatives, such as advanced oxygenation protein products (AOPP), has been detected in the CSF and serum. «Accelerated self-halogenation» and increased levels of haloperoxidases and AOPP proteins indicate that halogenative stress is present in Parkinson's disease. In addition, 3-iodo-L-tyrosine, a halogenated derivative, shows «parkinsonian» toxicity in experimental models, since it has been observed to induce α-synuclein aggregation and damage to dopaminergic neurons in the mouse brain and intestine. The hypothesis is that patients with Parkinson's disease display halogenative stress related to a haloenzymatic alteration of the synthesis or degradation of oxyacid of halogens and their halogenated derivatives. This halogenative stress would be related to nervous system damage.
- Published
- 2022
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3. Functional Enzyme Mimics for Oxidative Halogenation Reactions that Combat Biofilm Formation
- Author
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Herget, Karoline, Frerichs, Hajo, Pfitzner, Felix, Tahir, Muhammad Nawaz, Tremel, Wolfgang, Lockwood, David J., Series Editor, and Yan, Xiyun, editor
- Published
- 2020
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4. Evidence for an N-Halohistidyl Intermediate in the Catalytic Cycle of Vanadium Chloroperoxidase (VCPO) and an Artificial Enzyme Derived from VCPO: A Computational Investigation.
- Author
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Anderson, Gregory A., Behera, Raghu Nath, and Gomatam, Ravi
- Subjects
- *
SYNTHETIC enzymes , *VANADIUM , *BIOCATALYSIS , *GIBBS' free energy , *DRUG synthesis , *ACTIVATION energy - Abstract
Vanadium haloperoxidases play an important catalytic role in the natural production of antibiotics which are difficult to make in the laboratory. Understanding the catalytic mechanism of these enzymes will aid in the production of artificial enzymes useful in bioengineering the synthesis of drugs and useful chemicals. However, the catalytic mechanism remains not fully understood yet. In this paper, we investigate one of the key steps of the catalytic mechanism using QM/MM. Our investigation reveals a new N-halohistidyl intermediate in the catalytic cycle of vanadium chloroperoxidase (VCPO). This new intermediate, in turn, can explain the known inhibition of the enzyme by substrate under acidic conditions (pH < 4). Additionally, we examine the possibility of replacing V in VCPO by Nb or Ta using QM modeling. We report the new result that the Gibbs free energy barriers of several steps of the catalytic cycle are lower in the case of artificial enzymes, incorporating NbO 4 3 − or TaO 4 3 − instead of VO 4 3 − . Our results suggest that these new artificial enzymes may catalyze the oxidation of halide faster than the natural enzyme. The catalytic mechanism of vanadium chloroperoxidase is investigated using QM/MM, and evidence for a new N-halohistidyl intermediate is found in the last step of mechanism. When V is replaced with Nb or Ta, the barrier heights in the mechanism are calculated to be lower for some steps, using a QM model. Thus, we suggest that replacement of V with Nb or Ta may lead to an artificial enzyme with a faster rate of catalysis. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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5. Defect Engineered Bi 2 Te 3 Nanosheets with Enhanced Haloperoxidase Activity for Marine Antibiofouling.
- Author
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Kulkarni SS, Tong DK, Wu CT, Kao CY, and Chattopadhyay S
- Subjects
- Staphylococcus aureus drug effects, Biofouling prevention & control, Anti-Bacterial Agents pharmacology, Anti-Bacterial Agents chemistry, Peroxidases metabolism, Microbial Sensitivity Tests, Bismuth chemistry, Bismuth pharmacology, Tellurium chemistry, Nanostructures chemistry, Pseudomonas aeruginosa drug effects
- Abstract
Defective bismuth telluride (Bi
2 Te3 ) nanosheets, an artificial nanozyme mimicking haloperoxidase activity (hPOD), show promise as eco-friendly, bactericidal, and antimicrofouling materials by enhancing cytotoxic hypohalous acid production from halides and H2 O2 . Microscopic and spectroscopic characterization reveals that controlled NaOH (upto X = 250 µL) etching of the nearly inactive non-transition metal chalcogenide Bi2 Te3 nanosheets creates controlled defects (d), such as Bi3+ species, in d-Bi2 Te3 -X that induces enhanced hPOD activity. d-Bi2 Te3 -250 exhibits approximately eight-fold improved hPOD than the as-grown Bi2 Te3 nanosheets. The antibacterial activity of d-Bi2 Te3 -250 nanozymes, studied by bacterial viability, show 1, and 45% viability for Staphylococcus aureus and Pseudomonas aeruginosa, respectively, prevalent in marine environments. The hPOD mechanism is confirmed using scavengers, implicating HOBr and singlet oxygen for the effect. The antimicrofouling property of the d-Bi2 Te3 -250 nanozyme has been studied on Pseudomonas aeruginosa biofilm in a lab setting by multiple assays, and also on titanium (Ti) plates coated with the nanozyme mixed commercial paint, exposed to seawater in a real setting. All studies, including direct microscopic evidence, exhibit inhibition of microfouling, up to ≈73%, in the presence of nanozymes. This approach showcases that defect engineering can induce antibacterial, and antimicrofouling activity in non-transition metal chalcogenides, offering an inexpensive alternative to noble metals., (© 2024 The Author(s). Small published by Wiley‐VCH GmbH.)- Published
- 2024
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6. Enzymatic Bromocyclization of α‐ and γ‐Allenols by Chloroperoxidase from Curvularia inaequalis
- Author
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Janne M. Naapuri, Philip K. Wagner, Prof. Dr. Frank Hollmann, and Prof. Dr. Jan Deska
- Subjects
allenes ,cyclization ,halogenation ,haloperoxidase ,heterocycles ,Chemistry ,QD1-999 - Abstract
Abstract Vanadate‐dependent chloroperoxidase from Curvularia inaequalis catalyzes 5‐endo‐trig bromocyclizations of α‐allenols to produce valuable halofunctionalized furans as versatile synthetic building blocks. In contrast to other haloperoxidases, also the more challenging 5‐exo‐trig halocyclizations of γ‐allenols succeed with this system even though the scope still remains more narrow. Benefitting from the vanadate chloroperoxidase‘s high resiliency towards oxidative conditions, cyclization‐inducing reactive hypohalite species are generated in situ from bromide salts and hydrogen peroxide. Crucial requirements for high conversions are aqueous biphasic emulsions as reaction media, stabilized by either cationic or non‐ionic surfactants.
- Published
- 2022
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7. Enzymatic Bromocyclization of α‐ and γ‐Allenols by Chloroperoxidase from Curvularia inaequalis.
- Author
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Naapuri, Janne M., Wagner, Philip K., Hollmann, Frank, and Deska, Jan
- Subjects
CURVULARIA ,NONIONIC surfactants ,HYDROGEN bromide ,FURANS ,HYDROGEN peroxide ,CATIONIC surfactants ,EMULSIONS ,FURAN derivatives - Abstract
Vanadate‐dependent chloroperoxidase from Curvularia inaequalis catalyzes 5‐endo‐trig bromocyclizations of α‐allenols to produce valuable halofunctionalized furans as versatile synthetic building blocks. In contrast to other haloperoxidases, also the more challenging 5‐exo‐trig halocyclizations of γ‐allenols succeed with this system even though the scope still remains more narrow. Benefitting from the vanadate chloroperoxidase's high resiliency towards oxidative conditions, cyclization‐inducing reactive hypohalite species are generated in situ from bromide salts and hydrogen peroxide. Crucial requirements for high conversions are aqueous biphasic emulsions as reaction media, stabilized by either cationic or non‐ionic surfactants. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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8. Hybrid nickel-molybdenum bimetallic sulfide nanozymes for antibacterial and antibiofouling applications
- Author
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Wang, Wei, Luo, Qiang, Li, Linqian, Chen, Shipeng, Wang, Yifan, Du, Xiwen, and Wang, Ning
- Published
- 2023
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9. Vanadium-dependent haloperoxidase activity and phlorotannin incorporation into the cell wall during early embryogenesis of Fucus vesiculosus (Phaeophyceae).
- Author
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Lemesheva, Valeriya, Birkemeyer, Claudia, Garbary, David, and Tarakhovskaya, Elena
- Subjects
- *
FUCUS vesiculosus , *BROWN algae , *ALGAL development , *REACTIVE oxygen species , *ALGINIC acid , *MARINE algae , *BACTERIAL cell walls - Abstract
Vanadium-dependent haloperoxidases (V-HPO) are specific enzymes involved in the metabolism of reactive oxygen species in marine algae. These enzymes contribute to early embryogenesis of algae in the order Fucales, catalyzing the reactions which result in phlorotannin incorporation into the newly forming zygote cell wall and adhesive material. In this study we showed that early embryogenesis in Fucus vesiculosus is accompanied by synchronous changes of V-HPO activity, hydrogen peroxide content and content of cell-wall-associated phlorotannins. Phlorotannin incorporation into the cell wall of Fucus zygotes had already begun 1 h after fertilization, and this process was accompanied by rapid increase of H2O2 content and V-HPO activity. We suggest that altogether this initiates polymerization of phenolics and their cross-linking with the major cell wall constituent, alginic acid. Presumably, de novo phlorotannin biosynthesis is involved in this process, as GC-MS analysis showed dramatic changes in content of intracellular phloroglucinol and low-molecular-weight phlorotannins during the first 9 days of F. vesiculosus embryogenesis. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
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10. An Ultrasensitive Fluorescence Assay for the Detection of Halides and Enzymatic Dehalogenation.
- Author
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Aslan‐Üzel, Aşkın S., Beier, Andy, Kovář, David, Cziegler, Clemens, Padhi, Santosh K., Schuiten, Eva D., Dörr, Mark, Böttcher, Dominique, Hollmann, Frank, Rudroff, Florian, Mihovilovic, Marko D., Buryška, Tomáš, Damborský, Jiří, Prokop, Zbyněk, Badenhorst, Christoffel P. S., and Bornscheuer, Uwe T.
- Subjects
- *
DEHALOGENATION , *HALIDES , *FLUORESCENCE , *BROMIDE ions , *DEHALOGENASES , *FLUORESCEIN - Abstract
Halide assays are important for the study of enzymatic dehalogenation, a topic of great industrial and scientific importance. Here we describe the development of a very sensitive halide assay that can detect less than a picomole of bromide ions, making it very useful for quantifying enzymatic dehalogenation products. Halides are oxidised under mild conditions using the vanadium‐dependent chloroperoxidase from Curvularia inaequalis, forming hypohalous acids that are detected using aminophenyl fluorescein. The assay is up to three orders of magnitude more sensitive than currently available alternatives, with detection limits of 20 nM for bromide and 1 μM for chloride and iodide. We demonstrate that the assay can be used to determine specific activities of dehalogenases and validate this by comparison to a well‐established GC‐MS method. This new assay will facilitate the identification and characterisation of novel dehalogenases and may also be of interest to those studying other halide‐producing enzymes. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
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11. Haloperoxidase-Catalyzed Luminol Luminescence
- Author
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Robert C. Allen
- Subjects
haloperoxidase ,myeloperoxidase ,eosinophil peroxidase ,horseradish peroxidase ,halide oxidation ,singlet molecular oxygen ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Common peroxidase action and haloperoxidase action are quantifiable as light emission from dioxygenation of luminol (5-amino-2,3-dihydrophthalazine-1,4-dione). The velocity of enzyme action is dependent on the concentration of reactants. Thus, the reaction order of each participant reactant in luminol luminescence was determined. Horseradish peroxidase (HRP)-catalyzed luminol luminescence is first order for hydrogen peroxide (H2O2), but myeloperoxidase (MPO) and eosinophil peroxidase (EPO) are second order for H2O2. For MPO, reaction is first order for chloride (Cl−) or bromide (Br−). For EPO, reaction is first order for Br−. HRP action has no halide requirement. For MPO and EPO, reaction is first order for luminol, but for HRP, reaction is greater than first order for luminol. Haloperoxidase-catalyzed luminol luminescence requires acidity, but HRP action requires alkalinity. Unlike the radical mechanism of common peroxidase, haloperoxidases (XPO) catalyze non-radical oxidation of halide to hypohalite. That reaction is second order for H2O2 is consistent with the non-enzymatic reaction of hypohalite with a second H2O2 to produce singlet molecular oxygen (1O2*) for luminol dioxygenation. Alternatively, luminol dehydrogenation by hypohalite followed by reaction with H2O2 yields dioxygenation consistent with the same reaction order. Haloperoxidase action, Cl−, and Br− are specifically quantifiable as luminol luminescence in an acidic milieu.
- Published
- 2022
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12. Molecular Approaches in Marine Pharmacology
- Author
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Butler, Alison
- Subjects
haloperoxidase ,halogenated marine natural products ,terpenes ,Rhodophyta ,marine algae - Abstract
Many marine natural products and enzymes have important medical applications in the pharmaceutical, diagnostic and biotechnological industries. These compounds and enzymes are at various stages of development, ranging from evaluation of their biological activities, to testing in clinical trials, and to their incorporation into commercial products. Notwithstanding this success, the rise in drug-resistant infections demands new drugs and strategies for eradication or control of invading pathogenic organisms. In addition, early disease detection requires new or more sensitive biochemical diagnostic tools. Solutions to these problems can be provided through discovery of new bioactive compounds, studies of their biogenesis, including endogenous biosynthetic enzyme investigations, and elucidation of their molecular mechanisms of action. Such strategies will allow chemists and pharmacologists, working in a collaborative effort, to pursue the development of novel drugs and diagnostics.
- Published
- 2005
13. β-Dicarbonyls Facilitate Engineered Microbial Bromoform Biosynthesis.
- Author
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Loan TD, Vickers CE, Ayliffe M, and Luo M
- Subjects
- Biosynthetic Pathways genetics, Animals, Fermentation, Methane metabolism, Methane biosynthesis, Seaweed metabolism, Seaweed genetics, Halogenation, Saccharomyces cerevisiae metabolism, Saccharomyces cerevisiae genetics, Metabolic Engineering methods
- Abstract
Ruminant livestock produce around 24% of global anthropogenic methane emissions. Methanogenesis in the animal rumen is significantly inhibited by bromoform, which is abundant in seaweeds of the genus Asparagopsis . This has prompted the development of livestock feed additives based on Asparagopsis to mitigate methane emissions, although this approach alone is unlikely to satisfy global demand. Here we engineer a non-native biosynthesis pathway to produce bromoform in vivo with yeast as an alternative biological source that may enable sustainable, scalable production of bromoform by fermentation. β-dicarbonyl compounds with low p K a values were identified as essential substrates for bromoform production and enabled bromoform synthesis in engineered Saccharomyces cerevisiae expressing a vanadate-dependent haloperoxidase gene. In addition to providing a potential route to the sustainable biological production of bromoform at scale, this work advances the development of novel microbial biosynthetic pathways for halogenation.
- Published
- 2024
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14. The reaction of lignin model compounds during enzymatic bleaching with a Curvularia verruculosa haloperoxidase: impact on chlorination.
- Author
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Herold-Majumdar, Owik M., Loureiro, Pedro E.G., Ullrich, René, and Felby, Claus
- Subjects
- *
CHLORINATION , *LIGNINS , *SCISSION (Chemistry) , *AMMONIUM chloride , *SODIUM hypochlorite , *HYDROGEN chloride , *SALT , *BLEACHING (Chemistry) , *CURVULARIA - Abstract
Recent developments in enzymatic bleaching processes have led to replacement strategies of harsh chemicals by haloperoxidases. For this purpose, it is important to control the haloperoxidase-mediated formation of adsorbable organic halides (AOX). In this study, we studied the chlorination of monomeric and dimeric lignin model substrates. Guaiacol, acetovanillone, veratryl alcohol, pinoresinol and adlerol were treated with Curvularia verruculosa haloperoxidase and compared to a sodium hypochlorite treatment. High-performance liquid chromatography-diode array detection-mass spectrometry (HPLC-DAD-MS) analysis was employed for the characterization of the reaction products. Our results show that while treatment with haloperoxidases in the presence of sodium chloride and hydrogen peroxide leads to no improvement in AOX formation compared to chemical treatment with NaOCl, addition of ammonium chloride substantially lessens chlorination and promotes β-O-4 ether bond cleavage. The use of ammonium chloride in conjunction with enzymatic haloperoxidase-based bleaching could be a route to minimize lignin chlorination. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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15. Fluorescent Detection of Bromoperoxidase Activity in Microalgae and Planktonic Microbial Communities Using Aminophenyl Fluorescein
- Author
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Stephen D. Archer, Kevin M. Posman, Janice DeStefano, Amelia O. Harrison, Albertha Ladina, Elizabeth A. Cheff, and Daniel P. Witt
- Subjects
haloperoxidase ,bromoperoxidase ,microalgae ,diatom ,fluorescent assay ,enzyme activity ,Science ,General. Including nature conservation, geographical distribution ,QH1-199.5 - Abstract
Among planktonic communities haloperoxidase enzymes may play a role in the control of intracellular and extracellular reactive oxygen species, in the generation of halogenated organic compounds and in chemical interactions between microbes. We introduce a sensitive fluorometric assay with a large dynamic range that is based on the dearylation of aminophenyl fluorescein (APF) to fluorescein by highly reactive oxygen species. Bromoperoxidase and chloroperoxidase enzymes catalyze the reaction between hydrogen peroxide and halides to generate highly reactive hypohalite intermediates able to dearylate APF. The fundamentals and standardization of the approach are illustrated using a partially purified, vanadium-dependent bromoperoxidase from the red seaweed Corallina officinalis. Laboratory cultures of two polar diatoms, Porosira glacialis and Fragilariopsis cylindrus, are used to illustrate the sensitivity and potential applications of the approach for in vitro, in vivo and in situ measurements of bromoperoxidase activity. These two diatoms differ in biovolume-specific bromoperoxidase activity by 2-orders of magnitude, from 5.4 to 0.044 fmol fluorescein μm-3 h-1, respectively. The approach is also used to investigate the partition of haloperoxidase activity between different size fractions of summer coastal planktonic communities, illustrating that generally more than 50% of the haloperoxidase activity occurred in a >10 μm size fraction that was dominated by diatoms. The assay has the potential to be of value in many aspects of haloperoxidase research, including developing an improved understanding of the roles of haloperoxidase enzymes in microbial planktonic communities.
- Published
- 2019
- Full Text
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16. Coordination environment changes of the vanadium in vanadium-dependent haloperoxidase enzymes.
- Author
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McLauchlan, Craig C., Murakami, Heide A., Wallace, Craig A., and Crans, Debbie C.
- Subjects
- *
VANADIUM , *CATALYSIS , *HALOGENASES , *ENZYMES , *CHLOROPEROXIDASE - Abstract
Vanadium-dependent haloperoxidases are a class of enzymes that catalyze oxidation reactions with halides to form halogenated organic products and water. These enzymes include chloroperoxidase and bromoperoxidase, which have very different protein sequences and sizes, but regardless the coordination environment of the active sites is surprisingly constant. In this manuscript, the comparison of the coordination chemistry of V-containing-haloperoxidases of the trigonal bipyramidal geometry was done by data mining. The catalytic cycle imposes changes in the coordination geometry of the vanadium to accommodate the peroxidovanadium(V) intermediate in an environment we describe as a distorted square pyramidal geometry. During the catalytic cycle, this intermediate converts to a trigonal bipyramidal intermediate before losing the halogen and forming a tetrahedral vanadium-protein intermediate. Importantly, the catalysis is facilitated by a proton-relay system supplied by the second sphere coordination environment and the changes in the coordination environment of the vanadium(V) making this process unique among protein catalyzed processes. The analysis of the coordination chemistry shows that the active site is very tightly regulated with only minor changes in the coordination geometry. The coordination geometry in the protein structures deviates from that found for both small molecules crystalized in the absence of protein and the reported functional small molecule model compounds. At this time there are no examples reported of a structurally similar small molecule with the geometry observed for the peroxidovanadium(V) in the active site of the vanadium-containing haloperoxidases. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
17. Cover Feature: Erythronium Bonds: Noncovalent Interactions Involving Group 5 Elements as Electron‐Density Acceptors (Chem. Eur. J. 60/2023).
- Author
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Calabrese, Miriam, Gomila, Rosa M., Pizzi, Andrea, Frontera, Antonio, and Resnati, Giuseppe
- Subjects
- *
SOCIAL interaction , *NIOBIUM compounds - Abstract
Cover Feature: Erythronium Bonds: Noncovalent Interactions Involving Group 5 Elements as Electron-Density Acceptors (Chem. Eur. J. 60/2023) Cambridge Structural Database, haloperoxidase, noncovalent interactions, sigma-hole interactions, vanadium Keywords: Cambridge Structural Database; haloperoxidase; noncovalent interactions; sigma-hole interactions; vanadium EN Cambridge Structural Database haloperoxidase noncovalent interactions sigma-hole interactions vanadium 1 1 1 10/31/23 20231026 NES 231026 B Vanadium(V) derivatives b , and to a lesser extent analogous compounds of niobium and tantalum, form attractive interactions with electron-rich atoms (neutral or anionic). [Extracted from the article]
- Published
- 2023
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18. Halogenating Enzymes for Active Agent Synthesis: First Steps Are Done and Many Have to Follow
- Author
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Alexander Veljko Fejzagić, Jan Gebauer, Nikolai Huwa, and Thomas Classen
- Subjects
bromination ,chlorination ,pharmaceuticals ,active agent synthesis ,biocatalysis ,haloperoxidase ,halogenase ,Organic chemistry ,QD241-441 - Abstract
Halogens can be very important for active agents as vital parts of their binding mode, on the one hand, but are on the other hand instrumental in the synthesis of most active agents. However, the primary halogenating compound is molecular chlorine which has two major drawbacks, high energy consumption and hazardous handling. Nature bypassed molecular halogens and evolved at least six halogenating enzymes: Three kind of haloperoxidases, flavin-dependent halogenases as well as α-ketoglutarate and S-adenosylmethionine (SAM)-dependent halogenases. This review shows what is known today on these enzymes in terms of biocatalytic usage. The reader may understand this review as a plea for the usage of halogenating enzymes for fine chemical syntheses, but there are many steps to take until halogenating enzymes are reliable, flexible, and sustainable catalysts for halogenation.
- Published
- 2019
- Full Text
- View/download PDF
19. Enzymology and Molecular Genetics of Biological Halogenation
- Author
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van Pée, Karl-Heinz, Zehner, Susanne, and Gribble, G., editor
- Published
- 2003
- Full Text
- View/download PDF
20. Disease Resistant Transgenic Cotton to Prevent Preharvest Aflatoxin Contamination
- Author
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Rajasekaran, K., Jacks, T. J., Cary, J. W., Cleveland, T. E., and Vasil, Indra K., editor
- Published
- 2003
- Full Text
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21. From Reactive Oxygen Species to Reactive Brominating Species: Fenton Chemistry for Oxidative Bromination
- Author
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Eryu Wang, Rongbiao Tong, and Guodong Zhao
- Subjects
chemistry.chemical_classification ,Reactive oxygen species ,Renewable Energy, Sustainability and the Environment ,General Chemical Engineering ,Halogenation ,02 engineering and technology ,General Chemistry ,Oxidative phosphorylation ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Photochemistry ,01 natural sciences ,0104 chemical sciences ,chemistry.chemical_compound ,chemistry ,Bromide ,Haloperoxidase ,Environmental Chemistry ,Organic synthesis ,Fine chemical ,0210 nano-technology ,Hydrogen peroxide - Abstract
Fenton chemistry (Feᴵᴵ + H₂O₂ → HO•/HOO• + H₂O) generates reactive oxygen species (ROS) that are used for treatment of wastewater and oxidation of organic molecules and play a key role in biological oxidation systems. This study shows that Fenton chemistry can be used for generation of reactive brominating species (RBS) under neutral conditions at room temperature. The in situ RBS are successfully used for three types of oxidative bromination reactions. This green and nonacidic new method addresses the safety and environmental challenges of existing oxidative bromination methods. Additionally, this neutral Fenton–bromide system addresses the long-lasting problem of many functional haloperoxidase mimics that required strong acids for oxidation of bromide ion with hydrogen peroxide. This new green and mild method for generating RBS will significantly benefit the wide applications of brominated organic compounds in organic synthesis and the fine chemical and pharmaceutical industries.
- Published
- 2021
- Full Text
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22. Asymmetric Alkene and Arene Halofunctionalization Reactions in Meroterpenoid Biosynthesis.
- Author
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Moore, Bradley S.
- Subjects
- *
TERPENES synthesis , *BIOMIMETIC synthesis , *CHLOROPEROXIDASE , *BOND formation mechanism , *ANTIBIOTIC-producing organisms - Abstract
Meroterpenoid natural products are important bioactive molecules with broad distribution throughout nature. In Streptomyces bacteria, naphthoquinone-based meroterpenoids comprise a simple yet structurally fascinating group of natural product antibiotics that are enzymatically constructed through a series of asymmetric alkene and arene halofunctionalization reactions. This account article highlights our discovery and characterization of a group of vanadium-dependent chloroperoxidase enzymes that catalyze halogen-assisted cyclization and rearrangement reactions and have inspired biomimetic syntheses of numerous meroterpenoid natural products. 1 Introduction 2 Early Biosynthetic Insights and the Characterization of Alkene Halofunctionalization in Napyradiomycin Biosynthesis 3 Discovery of the Merochlorin Natural Products and Enzymatic Aryl Halofunctionalization 4 Discovery and Development of Unifying THN-Based Meroterpenoid Biosynthesis and Synthesis Approaches 5 Insights into Naphterpin and Marinone Biosynthesis Involving Cryptic Aryl Halofunctionalization Reactions 6 Closing Thoughts [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
23. Haloperoxidase Mediated Quorum Quenching by Nitzschia cf pellucida: Study of the Metabolization of N-Acyl Homoserine Lactones by a Benthic Diatom
- Author
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Michail Syrpas, Ewout Ruysbergh, Lander Blommaert, Bart Vanelslander, Koen Sabbe, Wim Vyverman, Norbert De Kimpe, and Sven Mangelinckx
- Subjects
quorum sensing ,haloperoxidase ,degradation pathway ,AHL ,reference compounds ,diatom-bacteria interactions ,Biology (General) ,QH301-705.5 - Abstract
Diatoms are known to produce a variety of halogenated compounds, which were recently shown to have a role in allelopathic interactions between competing species. The production of these compounds is linked to haloperoxidase activity. This research, has shown that this system may also be involved in diatom-bacteria interactions via the H2O2 dependent inactivation of a type of quorum sensing (QS) molecule, i.e., N-β-ketoacylated homoserine lactones (AHLs), by a natural haloperoxidase system from the benthic diatom Nitzschia cf pellucida. The AHL degradation pathway towards corresponding halogenated derivatives was elucidated via HPLC-MS analysis and the synthesis of a broad series of novel halogenated AHL analogues as reference compounds. Furthermore, their biological activity as quorum sensing modulators was directly compared and evaluated against a series of naturally occurring β-keto-AHLs. It has been demonstrated that the loss of the QS activity results from the final cleavage of the halogenated N-acyl chain of the signal molecules.
- Published
- 2014
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24. Some aspects of the iodine metabolism of the giant kelp Macrocystis pyrifera (phaeophyceae).
- Author
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Tymon, Teresa M., Miller, Eric P., Gonzales, Jennifer L., Raab, Andrea, Küpper, Frithjof C., and Carrano, Carl J.
- Subjects
- *
IODINE , *GIANT kelp , *COASTAL ecology , *HALOGENS , *METABOLISM , *CHEMICAL processes - Abstract
Despite its paramount role in the functioning of coastal ecosystems, relatively little is known about halogen metabolism in giant kelp ( Macrocystis pyrifera ). This is an important shortcoming given the potential implications for marine and atmospheric chemical processes in the wide distribution range of Macrocystis . The work presented here constitutes the first in depth investigation of the uptake, efflux, and of the physiological function of iodide in this important kelp species. Iodide uptake and efflux rates were measured in adult sporophytes of Macrocystis under normal and stressed (exogenous hydrogen peroxide and an elicitor-triggered oxidative burst) conditions. Kelp tissue took up iodide according to Michaelis-Menten type kinetics when incubated in seawater enriched with various concentrations of iodide. Upon the addition of exogenous hydrogen peroxide, simulating oxidative stress, a marked efflux of iodide occurred. In situ generation of hydrogen peroxide was elicited in Macrocystis upon the addition of oligomeric degradation products of alginate as well as arachidonic acid and methyl jasmonate constituting a defensive oxidative burst that could be linked to iodine accumulation. H 2 O 2 was detected at the single cell level using dichlorohydrofluorescein diacetate, a fluorogenic probe capable of detecting intracellular H 2 O 2 . When assayed for vanadium haloperoxidase activity, several bromoperoxidase isoforms were detected as well as a single iodoperoxidase. Altogether, the results of this study show that Macrocystis has an elaborate iodine metabolism, which is likely significant for impacting iodine speciation in seawater around kelp beds and for volatile halogen emissions into the coastal atmosphere. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
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25. Phytase from Aspergillus oryzae SBS50: Biocatalytic reduction of anti-nutritional factor and exhibiting vanadium-dependent haloperoxidase activity.
- Author
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Pragya, Sharma, Krishna Kant, and Singh, Bijender
- Subjects
PHYTASES ,FLOUR ,KOJI ,INDUSTRIAL enzymology ,PHYTIC acid ,SOLID-state fermentation ,RICE flour - Abstract
Phytases are valuable industrial enzymes widely used in food and feed production for monogastric animals. The purpose of this research is to study the possibility of employing solid-state fermentation (SSF) for phytase production by Aspergillus oryzae SBS50 using mixed substrates. Medium components for improvement of phytase production were optimized using 'one variable at a time' method. Optimization resulted in an overall 2.1 times increase in phytase production (506.12 U/g DMR) at 30 °C, pH 5.0 and moisture ratio of 1:4 supplemented with 0.75% ammonium sulphate. There was reduction in phytase production with reduction in water activity. The phytic acid was extracted from flours using hydrochloric acid (HCl) and trichloroacetic acid (TCA). Higher phytic acid content was extracted from wheat flour (3881.6 μg/g), among all the tested flours by HCl extraction method. Fungal phytase was used in the dephytinization of flours. Phytase supplementation enhanced the release of inorganic phosphate, reducing sugars and soluble proteins from all the flours. Treatment of different cereal flours with Aspergillus oryzae phytase resulted in 90–97% reduction in phytic acid content after 24h. A significant amount of inorganic phosphorus was released from wheat flour (10.42 mg/g), pearl millet flour (9.1 mg/g) followed by gram flour (6.2 mg/g) and rice flour (3.9 mg/g). The addition of vanadium resulted in the catalytic conversion of phytase into haloperoxidase, as well as the suppression of phytase activity. This study revealed that phytase from A. oryzae SBS50 can be utilized to improve the nutritional content of cereal-based meals and food products in the food processing sectors. Furthermore, semisynthetic haloperoxidase could be useful in various biotechnological applications. • Estimation of phytic acid in commonly used food ingredients. • Enzymatic reduction of anti-nutritional factor using phytase. • Conversion of phytase into vanadium-dependent haloperoxidase. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
26. Fenton chemistry enables the catalytic oxidative rearrangement of indoles using hydrogen peroxide
- Author
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Guodong Zhao, Rongbiao Tong, Eryu Wang, Lixin Liang, Rui Qi, and Shaoyan Lou
- Subjects
Bromine ,Radical ,chemistry.chemical_element ,Pollution ,Combinatorial chemistry ,Catalysis ,chemistry.chemical_compound ,chemistry ,Bromide ,Haloperoxidase ,Hypobromous acid ,Environmental Chemistry ,Organic synthesis ,Hydrogen peroxide - Abstract
Oxidative rearrangement of indoles is an important transformation to yield 2-oxindoles and spirooxindoles, which are present in many pharmaceutical agents and bioactive natural products. Previous oxidation methods show either broad applicability or greenness but rarely achieve both. Reported is the discovery of Fenton chemistry-enabled green catalytic oxidative rearrangement of indoles, which has wide substrate scope (42 examples) and greenness (water as the only stoichiometric byproduct) at the same time. Detailed mechanistic studies revealed that the Fenton chemistry generated hydroxyl radicals that further oxidize bromide to reactive brominating species (RBS: bromine or hypobromous acid). This in situ generated RBS is the real catalyst for the oxidative rearrangement. Importantly, the RBS is generated under neutral conditions, which addresses a long-lasting problem of many haloperoxidase mimics that require a strong acid for the oxidation of bromide with hydrogen peroxide. It is expected that this new catalytic Fenton-halide system will find wide applications in organic synthesis.
- Published
- 2021
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27. Haloperoxidase Mimicry by CeO2–x Nanorods of Different Aspect Ratios for Antibacterial Performance
- Author
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Xiaoyan He, Anne Neville, Chengqing Yuan, Jiangfan Chang, Feng Tian, Chun Wang, and Xiuqin Bai
- Subjects
Cerium oxide ,Renewable Energy, Sustainability and the Environment ,Chemistry ,General Chemical Engineering ,02 engineering and technology ,General Chemistry ,010402 general chemistry ,021001 nanoscience & nanotechnology ,01 natural sciences ,Aspect ratio (image) ,0104 chemical sciences ,Chemical engineering ,Haloperoxidase ,Environmental Chemistry ,Nanorod ,0210 nano-technology - Abstract
Cerium oxide nanorods as haloperoxidase started to gain attention due to their great potential as a biologically benign antifoulant. The antibacterial efficiency induced by haloperoxidase activity ...
- Published
- 2020
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- View/download PDF
28. Modeling the biological chemistry of vanadium: Structural and reactivity studies elucidating biological function
- Author
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Slebodnick, Carla, Hamstra, Brent J., Pecoraro, Vincent L., Clarke, Michael J., editor, Goodenough, John B., editor, Jørgensen, Christian K., editor, Mingos, David M. P., editor, Palmer, Graham A., editor, Sadler, Peter J., editor, Weiss, Raymond, editor, Williams, Robert J. P., editor, Hill, H. A. O., editor, Sadler, P. J., editor, and Thomson, A. J., editor
- Published
- 1997
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29. Vanadium bromoperoxidase and functional mimics
- Author
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Butler, Alison, Baldwin, Anne H., Clarke, Michael J., editor, Goodenough, John B., editor, Jørgensen, Christian K., editor, Mingos, David M. P., editor, Palmer, Graham A., editor, Sadler, Peter J., editor, Weiss, Raymond, editor, Williams, Robert J. P., editor, Hill, H. A. O., editor, Sadler, P. J., editor, and Thomson, A. J., editor
- Published
- 1997
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30. Enzymatic Bromocyclization of alpha- and gamma-Allenols by Chloroperoxidase from Curvularia inaequalis
- Author
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Naapuri, Janne M., Wagner, Philip K., Hollmann, Frank, Deska, Jan, and Department of Chemistry
- Subjects
Halogenation ,Cyclization ,116 Chemical sciences ,Heterocycles ,Allenes ,Haloperoxidase - Abstract
Vanadate-dependent chloroperoxidase from Curvularia inaequalis catalyzes 5-endo-trig bromocyclizations of alpha-allenols to produce valuable halofunctionalized furans as versatile synthetic building blocks. In contrast to other haloperoxidases, also the more challenging 5-exo-trig halocyclizations of gamma-allenols succeed with this system even though the scope still remains more narrow. Benefitting from the vanadate chloroperoxidase's high resiliency towards oxidative conditions, cyclization-inducing reactive hypohalite species are generated in situ from bromide salts and hydrogen peroxide. Crucial requirements for high conversions are aqueous biphasic emulsions as reaction media, stabilized by either cationic or non-ionic surfactants.
- Published
- 2022
31. Bacterial peroxidases – Multivalent enzymes that enable the use of hydrogen peroxide for microaerobic and anaerobic proliferation.
- Author
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Barreiro, Daniela S., Oliveira, Ricardo N.S., and Pauleta, Sofia R.
- Subjects
- *
PEROXIDASE , *CYTOCHROME c , *HYDROGEN peroxide , *ENZYMES , *ESCHERICHIA coli , *THERMAL equilibrium , *CYTOCHROMES - Abstract
[Display omitted] • Bacterial peroxidases belong to the widespread CCP_MauG family. • Bacterial peroxidases are divided into classical and non-classical enzymes. • The active P heme has a OH–/His HS coordination in a HS/LS thermal equilibrium. • Activation and catalytic mechanism are reviewed. • Non-classical YhjA structural model shows the architecture of this tri-hemic enzyme. Bacterial peroxidases are responsible for the reduction of hydrogen peroxide to water. Found in the periplasm of gram-negative bacteria, they are one of the defense mechanisms against endogenous and exogenous peroxide stress under low oxygen tensions. Besides being involved in peroxide detoxification, bacterial peroxidases have been proposed to constitute an alternative pathway to the respiratory chain under anoxic conditions, as demonstrated in E. coli that can use hydrogen peroxide as an electron acceptor in the absence of oxygen. Bacterial peroxidases are c -type cytochromes with either two or three c -type hemes bound to the polypeptide chain, being divided into classical or non-classical, respectively. Orthologous to the classical bacterial peroxidases are the MauG enzymes that share some structural, spectroscopic and sequence similarities but have distinct physiological roles (though for most their function remains unknown). The spectroscopic and kinetic data on bacterial peroxidases are reviewed for both classes. Most classical bacterial peroxidases require reductive activation that consists in structural changes so that the catalytic heme becomes accessible to the substrate. However, non-classical enzymes are ready to bind the hydrogen peroxide as their catalytic center is penta-coordinated, which is also observed in their structural model. The few studies that report the involvement of bacterial peroxidases from pathogenic bacteria in biofilms, is an indication that these enzymes might contribute to their infection mechanism and thus can constitute alternative drug targets. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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32. Synthesis and characterization of new CNT-loaded CeO2 nanoparticles for antibacterial applications.
- Author
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Xiong, Hanzhen, He, Xiaoyan, Lou, Tong, and Bai, Xiuqin
- Subjects
- *
CARBON nanotubes , *CERIUM oxides , *NANOPARTICLES , *COMPOSITE materials , *ANTIBACTERIAL agents - Abstract
Cerium oxide (CeO 2), with haloperoxidase mimic activity, has attracted attention because it can break through many limitations of biological enzymes as a green and efficient antibacterial agent. However, low Ce3+ concentration in CeO 2 restricts the activities of haloperoxidase mimicry, which hinders its application. Here, CeO 2 was loaded onto carbon nanotubes (CNTs), where dopamine hydrochloride (DA) was polymerized as the "linker" and CNTs the "skeleton." Two types of samples, termed CeO 2 -CNT (CeO 2 49@PDA/CNT and CeO 2 77@PDA/CNT), were prepared and CeO 2 was found to be uniformly distributed on CNTs, and their Ce3+ and oxygen (O) vacancy concentrations analyzed. CeO 2 77@PDA/CNT, with the higher Ce3+ and O vacancy concentration, showed excellent antibacterial performance, up to 98.03%. This study demonstrated a method for enhancing the activities of haloperoxidase mimicry and antibacterial performance of CeO 2 with CNTs as the skeleton. • CNT loaded CeO 2 NPs, CeO 2 -CNT composite material were prepared. • CeO 2 -CNT could mimic natural haloperoxidase, which breaked through the limitation of natural biological enzymes. • CeO 2 -CNT had stronger activity of haloperoxidase mimicry and antibacterial performance than CeO 2. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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33. Vanadium in biological systems and medicinal applications.
- Author
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Rehder, Dieter
- Subjects
- *
VANADIUM , *BIOLOGICAL systems , *NITROGEN fixation , *ASCOPHYLLUM nodosum , *COORDINATION compounds , *MARINE bacteria , *RHIZOBIUM , *LEGUMES - Abstract
[Display omitted] • The transformation of mineralized vanadium into bioavailable H 2 VO 4 -/VO2+ is addressed. • Vanadium is an essential factor in nitrogen fixation, algal haloperoxidases, fan worms and ascidians. • The role of vanadium in medicinal applications is covered. • Vanadium exhibits promising potentiality in the treatment of diabetes, carcinoma and bacterial infections. The present review covers the environmental availability of vanadium and vanadium's impact on the life sphere (geo-sphere, atmosphere, marine environments), as well as its potentiality in the treatment of diseases such as cancer, diabetes and bacterial infections. In particular, the following topics are addressed: (1) vanadium in marine environments (halide oxidation by haloperoxidases in the seaweed Ascophyllum nodosum and by marine bacteria associated with macroalgae; accumulation and redox transformation of vanadium by ascidians and fan worms); (2) the role of vanadium in nitrogen fixation by diazotrophs in the root nodules of legumes, and in liverworts and hornwarts; (3) amavadin in the fly agaric mushroom; (4) vanadium speciation by unicellular organisms (bacteria, protozoa) and adjunctive medicinal applications; (5) the potentiality of vanadium (coordination compounds) in the treatment of diseases such as cancer and diabetes, and bacterial infections. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
34. Ce-MOF composite electrospinning as antibacterial adsorbent for the removal of 2,4-dichlorophenoxyacetic acid.
- Author
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Zhang, Hao, Wang, Jing, Teng, Yakun, Jia, Shushu, Huang, Hui, Li, Yongxin, and Wang, Ce
- Subjects
- *
HERBICIDES , *ADSORPTION capacity , *MEMBRANE separation , *FIBROUS composites , *ELECTROSPINNING , *SORBENTS , *SURFACE structure - Abstract
[Display omitted] • Preparation of a novel adsorbent with antibacterial properties. • Ce-MOF loading can greatly improve the adsorption capacity of fibers for 2,4-D. • The haloperoxidase activity of Ce-MOF can give the fiber excellent antibacterial activity. • Ce-MOF@ABP is easier to recycle than powdered Ce-MOF. • Ce-MOF@ABP can be used as a filtration membrane to purify organic wastewater. 2,4-dichlorophenoxyacetic acid (2,4-D) is one of the most widely used herbicides with strong environmental toxicity, and it is necessary to be removed from water. However, some traditional adsorbents may be contaminated by bacteria during the removal process, which will affect the adsorption performance. Therefore, a novel adsorbent (Ce-MOF@ABP) with antibacterial properties was developed for the removal of 2,4-D. The adsorbent is prepared by in-situ growth of Ce-based MOF with UiO-66 structure on the surface of electrospun nanofibers by solvothermal method. The results of static adsorption experiments show that the composite fibrous membrane has a good removal effect on 2,4-D. The adsorption process is more consistent with the pseudo-second-order model and Langmuir model. The theoretical maximum adsorption capacity is 200.80 mg/g. The dynamic filtration experiment also shows a removal rate of 90.3% within 6 min (the membrane thickness is 0.12 mm). And most importantly, the haloperoxidase activity of Ce-MOF could endows fibrous membrane with excellent antibacterial properties, and the bacteriostatic rate of Escherichia coli is 92.91%. This study provides an innovative idea for the development of adsorbents/membranes with organic contaminant removal and antibacterial capabilities. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
35. Enzymatic Bromocyclization of α- and γ-Allenols by Chloroperoxidase from Curvularia inaequalis
- Author
-
Janne M, Naapuri, Philip K, Wagner, Frank, Hollmann, and Jan, Deska
- Subjects
heterocycles ,cyclization ,allenes ,halogenation ,haloperoxidase ,Curvularia ,Vanadates ,Chloride Peroxidase ,Research Articles ,Research Article - Abstract
Vanadate‐dependent chloroperoxidase from Curvularia inaequalis catalyzes 5‐endo‐trig bromocyclizations of α‐allenols to produce valuable halofunctionalized furans as versatile synthetic building blocks. In contrast to other haloperoxidases, also the more challenging 5‐exo‐trig halocyclizations of γ‐allenols succeed with this system even though the scope still remains more narrow. Benefitting from the vanadate chloroperoxidase‘s high resiliency towards oxidative conditions, cyclization‐inducing reactive hypohalite species are generated in situ from bromide salts and hydrogen peroxide. Crucial requirements for high conversions are aqueous biphasic emulsions as reaction media, stabilized by either cationic or non‐ionic surfactants., Vanadate‐dependent chloroperoxidase from Curvularia inaequalis catalyzes 5‐endo‐trig bromocyclizations of α‐allenols as well as the 5‐exo‐trig bromocyclizations of γ‐allenols to produce valuable halofunctionalized furans. An aqueous biphasic emulsion, based on either cationic or non‐ionic surfactants, acts as reaction medium, and allows effective halogenation reactions utilizing hydrogen peroxide as stoichiometric terminal oxidant.
- Published
- 2021
36. An Ultrasensitive Fluorescence Assay for the Detection of Halides and Enzymatic Dehalogenation
- Author
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Santosh Kumar Padhi, Dominique Böttcher, Tomas Buryska, Uwe T. Bornscheuer, Marko D. Mihovilovic, Clemens Cziegler, Aşkın S. Aslan-Üzel, Andy Beier, Florian Rudroff, Eva Schuiten, Mark Dörr, Christoffel P. S. Badenhorst, David Kovář, Zbyněk Prokop, Jiří Damborský, and Frank Hollmann
- Subjects
haloalkane ,Haloalkane ,Iodide ,Halide ,010402 general chemistry ,01 natural sciences ,Catalysis ,Inorganic Chemistry ,chemistry.chemical_compound ,Bromide ,haloperoxidase ,Haloperoxidase ,Physical and Theoretical Chemistry ,chemistry.chemical_classification ,Detection limit ,Full Paper ,010405 organic chemistry ,Organic Chemistry ,dehalogenase ,Halogenation ,Full Papers ,Combinatorial chemistry ,Orders of magnitude (mass) ,0104 chemical sciences ,3. Good health ,halides ,chemistry ,fluorescence - Abstract
Halide assays are important for the study of enzymatic dehalogenation, a topic of great industrial and scientific importance. Here we describe the development of a very sensitive halide assay that can detect less than a picomole of bromide ions, making it very useful for quantifying enzymatic dehalogenation products. Halides are oxidised under mild conditions using the vanadium‐dependent chloroperoxidase from Curvularia inaequalis, forming hypohalous acids that are detected using aminophenyl fluorescein. The assay is up to three orders of magnitude more sensitive than currently available alternatives, with detection limits of 20 nM for bromide and 1 μM for chloride and iodide. We demonstrate that the assay can be used to determine specific activities of dehalogenases and validate this by comparison to a well‐established GC‐MS method. This new assay will facilitate the identification and characterisation of novel dehalogenases and may also be of interest to those studying other halide‐producing enzymes., How sensitive! A simple, safe, and very sensitive assay for enzymatic dehalogenation is presented. The halides produced by dehalogenases are generally very unreactive and thus hard to detect. We use hydrogen peroxide and a haloperoxidase to activate halides to hypohalous acids, which are easily detected using the sensitive fluorogenic probe aminophenyl fluorescein.
- Published
- 2020
37. Meroterpenoid natural products fromStreptomycesbacteria – the evolution of chemoenzymatic syntheses
- Author
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Shaun M. K. McKinnie, Bradley S. Moore, Jonathan H. George, and Lauren A. M. Murray
- Subjects
Prenyltransferase ,010402 general chemistry ,01 natural sciences ,Biochemistry ,Chemical synthesis ,Streptomyces ,Article ,Polyketide ,Haloperoxidase ,Drug Discovery ,Biological Products ,Molecular Structure ,biology ,Terpenes ,010405 organic chemistry ,Chemistry ,Organic Chemistry ,Highly selective ,biology.organism_classification ,Combinatorial chemistry ,Anti-Bacterial Agents ,Enzymes ,0104 chemical sciences ,Genome mining ,Bacteria ,Naphthoquinones - Abstract
Covering: Up to January 2020Meroterpenoids derived from the polyketide 1,3,6,8-tetrahydroxynaphthalene (THN) are complex natural products produced exclusively by Streptomyces bacteria. These antibacterial compounds include the napyradiomycins, merochlorins, marinones, and furaquinocins and have inspired many attempts at their chemical synthesis. In this review, we highlight the role played by biosynthetic studies in the stimulation of biomimetic and, ultimately, chemoenzymatic total syntheses of these natural products. In particular, the application of genome mining techniques to marine Streptomyces bacteria led to the discovery of unique prenyltransferase and vanadium-dependent haloperoxidase enzymes that can be used as highly selective biocatalysts in fully enzymatic total syntheses, thus overcoming the limitations of purely chemical reagents.
- Published
- 2020
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38. Role of Local Structure on Catalytic Reactivity: Comparison of Methanol Oxidation by Aqueous Bioinorganic Enzyme Mimic (Vanadium Haloperoxidase) and Vanadia-Based Heterogeneous Catalyst (Supported VO4/SiO2)
- Author
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Isik Onal, Duygu Gerceker, Israel E. Wachs, Julie E. Molinari Erwin, and Ozgen Yalcin
- Subjects
010405 organic chemistry ,Vanadium ,chemistry.chemical_element ,Bioinorganic chemistry ,General Chemistry ,010402 general chemistry ,Heterogeneous catalysis ,01 natural sciences ,Combinatorial chemistry ,Redox ,Catalysis ,0104 chemical sciences ,chemistry.chemical_compound ,chemistry ,Haloperoxidase ,Enzyme mimic ,Methanol - Abstract
Although enzymes perform redox reactions at milder reaction conditions than heterogeneous solid catalysts, the origin of this reactivity difference still needs to be resolved. In the present study,...
- Published
- 2019
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- View/download PDF
39. Computational Study on the Catalytic Reaction Mechanism of Heme Haloperoxidase Enzymes
- Author
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M. Qadri E. Mubarak and Sam P. de Visser
- Subjects
chemistry.chemical_classification ,chemistry.chemical_compound ,Enzyme ,Chemistry ,Haloperoxidase ,General Chemistry ,Combinatorial chemistry ,Heme ,Mechanism (sociology) ,Catalysis - Published
- 2019
- Full Text
- View/download PDF
40. Effects of bromide-enriched natural seawater culture medium on protein and monoterpenes output of Ochtodes secundiramea (Rhodophyta, Gigartinales)
- Author
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Leonardo Zambotti-Villela, Levi Pompermayer Machado, Daniel X. Andreghetti, Luciana Retz de Carvalho, Nair S. Yokoya, Pio Colepicolo, Eliezer Stefanello, Universidade Estadual Paulista (Unesp), Universidade de São Paulo (USP), and Instituto de Botânica da Secretaria de Estado do Meio Ambiente
- Subjects
0106 biological sciences ,Protein content ,biology ,010604 marine biology & hydrobiology ,Phycobiliprotein ,Bioreactor ,Plant physiology ,Plant Science ,Aquatic Science ,Antifungal ,biology.organism_classification ,01 natural sciences ,Terpene ,chemistry.chemical_compound ,Bromoperoxidase ,chemistry ,Algae ,Bromide ,Chlorophyll ,Haloperoxidase ,Rhodophyta ,Food science ,Gigartinales ,Halogenated monoterpenes ,010606 plant biology & botany - Abstract
Made available in DSpace on 2019-10-06T16:40:55Z (GMT). No. of bitstreams: 0 Previous issue date: 2019-01-01 Benthic marine algae, especially Rhodophyta, are within a well-known marine group able to produce secondary metabolites with bioactive properties. Among them are halogenated terpenes, synthesized by vanadium-dependent haloperoxidase (V-BPO). The red alga Ochtodes secundiramea (Montagne) M. Howe produces high amounts of halogenated monoterpenes (HMT) which have the potential to control phytopathogenic fungi. Culture closed a system is a tool used to manipulate conditions to increase the synthesis of HMT and other metabolites. The apical segments of O. secundiramea were cultivated in a bioreactor, either in seawater enriched with half strength von Stosch’s solution (VSES/2) without (control) and with the addition of 250 mg L−1 bromine (treatment). In response to these conditions, specific growth rate, HMT profile, soluble protein, phycobiliproteins, soluble carbohydrate, and chlorophyll as well as the V-BPO activity, uptake, and accumulated bromine within the biomass were evaluated. The treatment did not promote significant alterations in the growth but increased the V-BPO activity and bromine uptake and incorporation (2.5 fold). No changes in the HMT profiles of the extracts from both cultures conditions were observed by gas chromatography–mass spectrometry analyses, whereas the values of total soluble protein and phycobiliproteins were 2-fold higher in samples from the bromine-enriched medium when compared to samples from control. These results support the evidences of protective effects promoted by V-BPO activity. Furthermore, carbohydrate and chlorophyll contents were not affected by experimental conditions. These results provided new low-cost strategies that can be applied to increase of certain biomass components, which here are algal proteins, especially in Rhodophyta-based biotechnological industries for food and agriculture. Coordenadoria de Engenharia de Pesca Universidade Estadual Paulista—UNESP, Campus Experimental de Registro, Vila Tupi: Av. Nelson Brihi Badur, 430 Departamento de Bioquímica Instituto de Química da Universidade de São Paulo, Av. Prof. Lineu Prestes, 748—Cidade Universitária Núcleo de Pesquisa em Ficologia Instituto de Botânica da Secretaria de Estado do Meio Ambiente, Av. Miguel Estefano, 3687, Água Funda Coordenadoria de Engenharia de Pesca Universidade Estadual Paulista—UNESP, Campus Experimental de Registro, Vila Tupi: Av. Nelson Brihi Badur, 430
- Published
- 2019
- Full Text
- View/download PDF
41. CuO nanoparticles as haloperoxidase-mimics: Chloride-accelerated heterogeneous Cu-Fenton chemistry for H2O2 and glucose sensing
- Author
-
Li Wang, Qisheng Liang, Tao Guo, Jiaojiao Hou, Sizhong Liu, David Oakley, Andrew J. Carrier, and Xu Zhang
- Subjects
inorganic chemicals ,Halide ,Glucose sensing ,02 engineering and technology ,010402 general chemistry ,01 natural sciences ,Chloride ,Haloperoxidase ,Materials Chemistry ,medicine ,Electrical and Electronic Engineering ,Instrumentation ,Chemistry ,Metals and Alloys ,Biofilm ,021001 nanoscience & nanotechnology ,Condensed Matter Physics ,Combinatorial chemistry ,0104 chemical sciences ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Cuo nanoparticles ,Halogen ,Fenton chemistry ,0210 nano-technology ,medicine.drug - Abstract
CuO nanoparticles (CuO NPs) were demonstrated as a novel nanoenzyme, i.e., haloperoxidase mimic, which catalyzes the oxidation of halide ions to form reactive halogen species (RHS). Two functions of CuO NPs have been demonstrated in the work. First, RHS halogenate bacterial signaling molecules, thus preventing biofilm formation. Second, CuO is used in sensitive colorimetric assays for H2O2 and glucose.
- Published
- 2019
- Full Text
- View/download PDF
42. Recombinant HAP Phytase of the Thermophilic Mold Sporotrichum thermophile: Expression of the Codon-Optimized Phytase Gene in Pichia pastoris and Applications.
- Author
-
Ranjan, Bibhuti and Satyanarayana, T.
- Abstract
The codon-optimized phytase gene of the thermophilic mold Sporotrichum thermophile ( St- Phy) was expressed in Pichia pastoris. The recombinant P. pastoris harboring the phytase gene ( rSt- Phy) yielded a high titer of extracellular phytase (480 ± 23 U/mL) on induction with methanol. The recombinant phytase production was ~40-fold higher than that of the native fungal strain. The purified recombinant phytase (rSt-Phy) has the molecular mass of 70 kDa on SDS-PAGE, with K and V (calcium phytate), k and k/ K values of 0.147 mM and 183 nmol/mg s, 1.3 × 10/s and 8.84 × 10/M s, respectively. Mg and Ba display a slight stimulatory effect, while other cations tested exert inhibitory action on phytase. The enzyme is inhibited by chaotropic agents (guanidinium hydrochloride, potassium iodide, and urea), Woodward's reagent K and 2,3-bunatedione, but resistant to both pepsin and trypsin. The rSt-Phy is useful in the dephytinization of broiler feeds efficiently in simulated gut conditions of chick leading to the liberation of soluble inorganic phosphate with concomitant mitigation in antinutrient effects of phytates. The addition of vanadate makes it a potential candidate for generating haloperoxidase, which has several applications. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
43. Characteristics and Applicability of Phytase of the Yeast Pichia anomala in Synthesizing Haloperoxidase.
- Author
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Joshi, Swati and Satyanarayana, Tulasi
- Abstract
The phytase of the yeast Pichia anomala is a histidine acid phosphatase based on signature sequences and catalytic amino acids identified by site-directed mutagenesis. Among modulators, N-bromosuccinimide and butanedione inhibit phytase, while Ca and Ni stimulate slightly. Vanadate exhibits competitive inhibition of phytase, making it bifunctional to act as haloperoxidase. Molecular docking supports vanadate to share its binding site with phytate. The T, activation energy ( E), temperature quotient ( Q), activation energy of thermal inactivation (E), and enthalpy (ΔH) of the enzyme are 4.0 min (80 °C), 27.72 kJ mol, 2.1, 410.62 kJ mol, and ∼407.8 kJ mol (65-80 °C), respectively. The free energy of the process (ΔG) increases from 49.56 to 71.58 kJ mol with rise in temperature, while entropy of inactivation (ΔS) remains constant at ∼1.36 kJ mol K. The supplementation of whole wheat dough with rPPHY resulted in 72.5 % reduction in phytic acid content of bread. These characteristics confirm that the phytase has adequate thermostability for its applicability as a food and feed additive. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
44. Random mutagenesis and selection of organic solvent-stable haloperoxidase from Streptomyces aureofaciens.
- Author
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Yamada, Ryosuke, Higo, Tatsutoshi, Yoshikawa, Chisa, China, Hideyasu, Yasuda, Masahiro, and Ogino, Hiroyasu
- Subjects
MUTAGENESIS ,ORGANIC solvents ,STREPTOMYCES aureofaciens ,OXYGENASES ,HALOGENATION ,POLYMERASE chain reaction - Abstract
Haloperoxidases are useful oxygenases involved in halogenation of a range of water-insoluble organic compounds and can be used without additional high-cost cofactors. In particular, organic solvent-stable haloperoxidases are desirable for enzymatic halogenations in the presence of organic solvents. In this study, we adopted a directed evolution approach by error-prone polymerase chain reaction to improve the organic solvent-stability of the homodimeric BPO-A1 haloperoxidase from Streptomyces aureofaciens. Among 1,000 mutant BPO-A1 haloperoxidases, an organic solvent-stable mutant OST48 with P123L and P241A mutations and a high active mutant OST959 with H53Y and G162R mutations were selected. The residual activity of mutant OST48 after incubation in 40% (v/v) 1-propanol for 1 h was 1.8-fold higher than that of wild-type BPO-A1. In addition, the OST48 mutant showed higher stability in methanol, ethanol, dimethyl sulfoxide, and N,N-dimethylformamide than wild-type BPO-A1 haloperoxidase. Moreover, after incubation at 80°C for 1 h, the residual activity of mutant OST959 was 4.6-fold higher than that of wild-type BPO-A1. Based on the evaluation of single amino acid-substituted mutant models, stabilization of the hydrophobic core derived from P123L mutation and increased numbers of hydrogen bonds derived from G162R mutation led to higher organic solvent-stability and thermostability, respectively. © 2015 American Institute of Chemical Engineers Biotechnol. Prog., 31:917-924, 2015 [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
45. Ce-MOF with Intrinsic Haloperoxidase-Like Activity for Ratiometric Colorimetric Detection of Hydrogen Peroxide
- Author
-
Yanyan Cheng, Shulin Zhao, Fanggui Ye, and Ling Liang
- Subjects
Clinical Biochemistry ,ratiometric colorimetric ,Bromophenol blue ,hydrogen peroxide ,02 engineering and technology ,Biosensing Techniques ,010402 general chemistry ,01 natural sciences ,Catalysis ,Article ,Nanomaterials ,Absorbance ,chemistry.chemical_compound ,Biomimetic Materials ,Limit of Detection ,Haloperoxidase ,Metal-Organic Frameworks ,Phenol red ,Chromogenic ,Substrate (chemistry) ,haloperoxidase-like activity ,General Medicine ,Cerium ,021001 nanoscience & nanotechnology ,Combinatorial chemistry ,nanozyme ,0104 chemical sciences ,Ce-MOF ,chemistry ,Colorimetry ,0210 nano-technology ,Biosensor ,Oxidation-Reduction ,TP248.13-248.65 ,Biotechnology - Abstract
Metal–organic framework (MOF) nanozymes, as emerging members of the nanozymes, have received more and more attention due to their composition and structural characteristics. In this work, we report that mixed-valence state Ce-MOF (MVCM) has intrinsic haloperoxidase-mimicking activity. MVCM was synthesized by partial oxidation method using Ce-MOF as a precursor. In the presence of H2O2 and Br−, MVCM can catalyze oxidative bromination of chromogenic substrate phenol red (PR) to produce the blue product bromophenol blue (Br4PR), showing good haloperoxidase-like activity. Because of the special chromogenic substrate, we constructed a ratiometric colorimetric-sensing platform by detecting the absorbance of the MVCM-(PR, Br−) system at wavelengths of 590 and 430, for quantifying H2O2, where the detection limit of the H2O2 is 3.25 μM. In addition, the haloperoxidase-mimicking mechanism of the MVCM is proposed. Moreover, through enzyme kinetics monitoring, the Km (H2O2 and NH4Br) of the MVCM is lower than that of cerium oxide nanomaterials, indicating that the MVCM has a stronger binding affinity for H2O2 and NH4Br than other materials. This work provides more application prospects for the development of nanozymes in the field of biosensors in the future.
- Published
- 2021
46. Improvement of the stability and activity of the BPO-A1 haloperoxidase from Streptomyces aureofaciens by directed evolution.
- Author
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Yamada, Ryosuke, Higo, Tatsutoshi, Yoshikawa, Chisa, China, Hideyasu, and Ogino, Hiroyasu
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- *
ENZYME stability , *PEROXIDASE , *STREPTOMYCES aureofaciens , *BACTERIAL evolution , *OXYGENASES , *HALOGENATION , *ORGANIC compounds - Abstract
Haloperoxidases are oxygenases that catalyze the halogenation of a range of organic compounds without the need for additional high-cost cofactors. Thus, haloperoxidases with high activity and stability are desired for industrial application. In this study, a directed evolution approach was adopted to improve the thermostability of the homodimeric BPO-A1 haloperoxidase from Streptomyces aureofaciens . Among 1000 mutant BPO-A1 haloperoxidases, 2 mutants HT177 and HT507, having higher thermostabilities than the wild-type BPO-A1 haloperoxidase, were obtained by directed evolution. The residual activities of mutants HT177 and HT507 were 2.3- and 5.1-fold higher than that of wild-type BPO-A1, respectively, after incubation at 80 °C for 1 h. In addition, mutant HT177 showed higher stability in organic solvents, such as methanol, ethanol, dimethyl sulfoxide, and N , N -dimethylformamide, than the wild-type BPO-A1 haloperoxidase. Furthermore, mutant HT507 showed higher specific activity. Based on the evaluation of single-amino-acid-substituted mutants, stabilization of the α-helix conformation, substitution of amino acid residues located at the surface of the protein molecule, and enhancement of the interaction between subunits may account for the improvement in thermostability, organic solvent stability, and specific activity. Consequently, the thermostability, organic solvent stability, and specific activity of S. aureofaciens BPO-A1 haloperoxidase were successfully improved by a directed evolution approach. [ABSTRACT FROM AUTHOR]
- Published
- 2014
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47. Catalytic Applications of Vanadium: A Mechanistic Perspective
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Massimiliano Delferro, Christopher L. Marshall, Peter C. Stair, Ryan R. Langeslay, David M. Kaphan, and Alfred P. Sattelberger
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010405 organic chemistry ,Chemistry ,Vanadium ,chemistry.chemical_element ,General Chemistry ,Cyanation ,010402 general chemistry ,Metathesis ,01 natural sciences ,0104 chemical sciences ,Catalysis ,Polymerization ,Haloperoxidase ,Organic chemistry ,Dehydrogenation ,Bond cleavage - Abstract
The chemistry of vanadium has seen remarkable activity in the past 50 years. In the present review, reactions catalyzed by homogeneous and supported vanadium complexes from 2008 to 2018 are summarized and discussed. Particular attention is given to mechanistic and kinetics studies of vanadium-catalyzed reactions including oxidations of alkanes, alkenes, arenes, alcohols, aldehydes, ketones, and sulfur species, as well as oxidative C-C and C-O bond cleavage, carbon-carbon bond formation, deoxydehydration, haloperoxidase, cyanation, hydrogenation, dehydrogenation, ring-opening metathesis polymerization, and oxo/imido heterometathesis. Additionally, insights into heterogeneous vanadium catalysis are provided when parallels can be drawn from the homogeneous literature.
- Published
- 2018
- Full Text
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48. Two dinuclear oxidovanadium(V) complexes of N2O2 donor amine-bis(phenolate) ligands with bromo-peroxidase activities: Kinetic, catalytic and computational studies
- Author
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Mainak Debnath, Malay Dolai, Kaberi Pal, Mahammad Ali, Arpan Dutta, and Hon Man Lee
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010405 organic chemistry ,Protonation ,010402 general chemistry ,01 natural sciences ,Redox ,Medicinal chemistry ,0104 chemical sciences ,Catalysis ,Inorganic Chemistry ,chemistry.chemical_compound ,chemistry ,Catalytic cycle ,Salicylaldehyde ,Bromide ,Haloperoxidase ,Octahedral molecular geometry ,Materials Chemistry ,Physical and Theoretical Chemistry - Abstract
Two dinuclear oxidovanadium(V) complexes [LiVVO(µ2-O)VVO(Li)] (i = 1, H2L1, complex 1 and i = 2 for H2L2, complex 2) of two ONNO donor amine-bis(phenolate) ligands have been synthesized and characterized by X-ray diffraction studies which exhibited distorted octahedral geometry around each V center. In MeCN the complexes exist as dimers as indicated by HRMS studies, however, in the presence of 2 or more equivalents of H+ the dimers turned into monomers, ([LiVV = O]+ which exists in equilibrium with ([LiVV = OH]2+ and evidenced from the shift in λmax from 685 nm to 765 nm for complex 1 and 600 to 765 nm for complex 2. The complexes 1 and 2 efficiently catalyze the oxidative bromination of salicylaldehyde in the presence of H2O2 to produce 5-bromo-salicylaldehyde as the major product with TONs 405 and 450, respectively in the mixed solvent system (H2O:MeOH:THF = 4:3:2, v/v). The kinetic analysis of the bromide ion oxidation reaction indicates a mechanism which is first order in peroxidovanadium complex and bromide ion and limiting first-order on [H+]. The evaluated kBr and kH values are (8.82 ± 0.35) and (65.0 ± 2.23) M−1 s−1 for complex 1 and (6.74 ± 0.19) and (61.87 ± 2.27) M−1 s−1 for complex 2, respectively. The Ka of protonated species ([LiVV = OH]2+ are: Ka = (4.3 ± 0.40) × 10−3 (pKa = 2.37) and (4.7 ± 0.50) × 10−3 (pKa = 2.33) for complex 1 and 2 respectively. On the basis of the chemistry displayed by these model compounds, a mechanism of bromide oxidation and a tentative catalytic cycle have been framed which might be relevant to vanadium haloperoxidase enzymes and supported by DFT calculations.
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- 2018
- Full Text
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49. Standardized assays for determining the catalytic activity and kinetics of peroxidase-like nanozymes
- Author
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Demin Duan, Aifa Tang, Yuhai Bi, George F. Gao, Kelong Fan, Ni Xie, Guohui Nie, Mengjie Zhou, Yan Tang, Minmin Liang, Xiyun Yan, Juqun Xi, Lizeng Gao, Zhou Tong, and Bing Jiang
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biology ,Chemistry ,Kinetics ,Nanotechnology ,02 engineering and technology ,010402 general chemistry ,021001 nanoscience & nanotechnology ,Biochemistry ,01 natural sciences ,Catalysis ,General Biochemistry, Genetics and Molecular Biology ,Nanostructures ,0104 chemical sciences ,Nanomaterials ,Broad spectrum ,Haloperoxidase ,Peroxidase like ,biology.protein ,0210 nano-technology ,Fe3o4 nanoparticles ,Peroxidase - Abstract
Nanozymes are nanomaterials exhibiting intrinsic enzyme-like characteristics that have increasingly attracted attention, owing to their high catalytic activity, low cost and high stability. This combination of properties has enabled a broad spectrum of applications, ranging from biological detection assays to disease diagnosis and biomedicine development. Since the intrinsic peroxidase activity of Fe3O4 nanoparticles (NPs) was first reported in 2007, >40 types of nanozymes have been reported that possess peroxidase-, oxidase-, haloperoxidase- or superoxide dismutase-like catalytic activities. Given the complex interdependence of the physicochemical properties and catalytic characteristics of nanozymes, it is important to establish a standard by which the catalytic activities and kinetics of various nanozymes can be quantitatively compared and that will benefit the development of nanozyme-based detection and diagnostic technologies. Here, we first present a protocol for measuring and defining the catalytic activity units and kinetics for peroxidase nanozymes, the most widely used type of nanozyme. In addition, we describe the detailed experimental procedures for a typical nanozyme strip-based biological detection test and demonstrate that nanozyme-based detection is repeatable and reliable when guided by the presented nanozyme catalytic standard. The catalytic activity and kinetics assays for a nanozyme can be performed within 4 h.
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- 2018
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50. Single-atom tungsten engineering of MOFs with biomimetic antibiofilm activity toward robust uranium extraction from seawater
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Wei Wang, Yunhong Li, Qiang Luo, Ronggen Wu, Yilan Li, Ning Wang, Jinyang Li, and Xiaobing Huo
- Subjects
Chemistry ,General Chemical Engineering ,Extraction (chemistry) ,chemistry.chemical_element ,Vanadium ,General Chemistry ,Uranium ,Tungsten ,Industrial and Manufacturing Engineering ,Biofouling ,Chemical engineering ,Haloperoxidase ,Environmental Chemistry ,Metal-organic framework ,Seawater - Abstract
Uranium is the essential element for nuclear power industry. Selective uranium extraction from seawater is very attractive, but challenging because ubiquitous marine biofouling seriously impairs the uranium extraction capacity and reusability of absorbents in bio-aggressive seawater. Herein, we construct a reusable nanozyme for uranium recovery from seawater based on atomically dispersed tungsten anchored on metal organic frameworks (W-UiO). We illustrate that W-UiO nanozyme mimics naturally occurring vanadium haloperoxidase that catalytically converting halides to biocidal hypobromous acid, inducing strong antibiofouling activity against marine microbial colonization. As demonstrated, W-UiO nanozyme shows superb reusability in raw seawater simultaneously, preserving a 78.0% of its initial uranium capture capacity (6.8 times higher than its pristine counterpart) after five consecutive adsorption-desorption cycles. This study is anticipated to spur rationally realizing robust absorbents by mimicking the natural enzymes for practical application in uranium recovery from seawater.
- Published
- 2022
- Full Text
- View/download PDF
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