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Curated resources at centralized repositories provide high-value service to users by enhancing data veracity. Curation, however, comes with a cost, as it requires dedicated time and effort from personnel with deep domain knowledge. In this paper, we investigate the performance of a large language model (LLM), specifically generative pre-trained transformer (GPT)-3.5 and GPT-4, in extracting and presenting data against a human curator. In order to accomplish this task, we used a small set of journal articles on wheat and barley genetics, focusing on traits, such as salinity tolerance and disease resistance, which are becoming more important. The 36 papers were then curated by a professional curator for the GrainGenes database (https://wheat.pw.usda.gov). In parallel, we developed a GPT-based retrieval-augmented generation question-answering system and compared how GPT performed in answering questions about traits and quantitative trait loci (QTLs). Our findings show that on average GPT-4 correctly categorized manuscripts 97% of the time, correctly extracted 80% of traits, and 61% of marker-trait associations. Furthermore, we assessed the ability of a GPT-based DataFrame agent to filter and summarize curated wheat genetics data, showing the potential of human and computational curators working side-by-side. In one case study, our findings show that GPT-4 was able to retrieve up to 91% of disease related, human-curated QTLs across the whole genome, and up to 96% across a specific genomic region through prompt engineering. Also, we observed that across most tasks, GPT-4 consistently outperformed GPT-3.5 while generating less hallucinations, suggesting that improvements in LLM models will make generative artificial intelligence a much more accurate companion for curators in extracting information from scientific literature. Despite their limitations, LLMs demonstrated a potential to extract and present information to curators and users of biological databases, as long as users are aware of potential inaccuracies and the possibility of incomplete information extraction.

The goal of the current study was to investigate the effects of seed priming with salicylic acid (SA) on seed germination parameters, seedling growth traits, nutritional element mobilization, and oxidative stress status in two barley species that were subjected to various salt treatments. The findings demonstrated that salinity reduced a number of germination parameters in unprimed seeds and impacted seedling growth by impeding both species' necessary nutrient mobilization. Under this abiotic stress, a noticeable rise in malondialdehyde and electrolyte leakage was also noted. Interestingly, pretreating seeds with SA improved seed germination and seedling growth performance under either 100 mM or 200 mM NaCl treatments. In fact, SA improved the length and dry weight of stressed seedlings of both barley species in addition to increasing the germination rate and mean daily germination. Additionally, SA increased the content of calcium, iron, magnesium, and potassium while lowering the concentrations of sodium and malondialdehyde and electrolyte leakage. It is significant to note that, in comparison to Hordeum maritimum, the positive effects of this hormone were more noticeable in stressed Hordeum vulgare species. [ABSTRACT FROM AUTHOR]

The genus Hordeum (barley) represents an essential group within the Poaceae family, comprising diverse species with significant ecological and economic importance. This study aims to improve the infrageneric classification of Hordeum by integrating multiple analytical approaches based on morphological data. A comprehensive dataset of key morphological traits was compiled from a wide range of Hordeum accessions, including representatives from all major taxonomic groups within the genus. Understanding and classifying the evolutionary traits of barley species, particularly in terms of environmental adaptation, pest resistance, and productivity improvement, is essential. DNA-based classification methods allow precise molecular-level analysis but are resource-intensive, especially when large-scale processing is required. This study addresses these limitations by employing an integrative approach combining hierarchical clustering, Principal Component Analysis–Linear Discriminant Analysis (PCA-LDA), and Random Forest (RF) to analyze the compiled morphological datasets. Morphological clustering via hierarchical analysis revealed clear taxonomic distinctions, achieving 86.0% accuracy at the subgenus level and 83.1% at the section level. PCA-LDA further refined classification by identifying key traits such as seed width, area, and 100-seed weight as primary contributors, achieving perfect accuracy for the Hordeum section and high accuracy for species like Hordeum vulgare and Hordeum spontaneum. RF analysis enhanced classification performance, achieving 100% accuracy at the section level and high accuracy for species with sufficient data. This approach offers a new framework for classifying diverse barley species and contributes significantly to data-driven decision-making in breeding and conservation efforts, supporting a deeper understanding of barley's adaptive evolution in response to environmental changes. [ABSTRACT FROM AUTHOR]

Elymus sensu stricto includes tetraploid species in the tribe Triticeae with a StH genome combination derived from Hordeum (H) and Pseudoroegneria (St). The group is related to many important cereals and forage grasses and is considered an important wild genetic resource for crop breeding. The relationships within Elymus s.s. have been difficult to resolve due to the large number of widely distributed species, a high degree of morphological diversity, introgression between species, and potential multiple origins. Using genome-wide DArTseqLD data from 57 taxa, including the StH group and associated species, it is possible to gain representative information about the genetic structure of the genus. SplitsTree, STRUCTURE and principal component analysis (PCoA) show that Elymus s.s. is divided into two major clades highly correlating with geographical origin separating American species from Eurasians. These findings, together with the contribution of different Pseudoroegneria and Hordeum species to the two clades, support the conclusion that Elymus s.s. has at least two independent origins. The Eurasian and American clades are further divided into three and two subclades, respectively. The results show that Elymus species have migrated multiple times from North to South America and between America and Eurasia. The new findings could be used to develop a new classification of Elymus s.s. with sections based on phylogenetic data. [ABSTRACT FROM AUTHOR]

During excavations of historical monuments, archaeologists find various artifacts that testify to the existence and everyday life of our distant ancestors. Particular attention is paid to the remains of living organisms. They not only provide evidence of the economic activity of ancient farmers, but also help to identify phylogenetic relationships and domestication processes in the world's centers of diversity. Due to the long-term presence of paleontological objects in the environment that is not conducive to preservation, they often get destroyed and it becomes impossible to determine which species they belong to. Therefore, archaeologists increasingly resort to the help of paleogeneticists. The works on studies of ancient DNA (aDNA) from human and animal remains are known in Russia. However, paleogenetic studies of fossil plant remains such as pollen, seeds, and timber are few. In 2019, carbonized grains of cereal crops were found on the territory of the Usvyaty settlement in Pskov Region. The findings date back to the 12th century. The morphological analysis of the seed mixture resulted in finding grains, the degree of destruction of which prevented determination of the species they belong to by analyzing their microrelief. Therefore, the aim of this study was to develop taxon-specific primers that yield a short amplification product for the analysis of fragmented aDNA from the destroyed barley caryopses. As a result, a PCR test named HORDELF was developed, which is recommended for the identification of plant residues (carbonized seeds) belonging to the genus Hordeum L.

Tritordeum is the new cereal derived from crosses between the wild barley Hordeum chilense Roem. et Schultz. and either durum or bread wheat, resulting in hexaploid and octoploid tritordeums, respectively. The success of tritordeum as a crop depends on the effectiveness of its breeding programme. In this work, new advanced tritordeum lines are screened for grain carotenoid content and disease susceptibility to analyse the impact of the current breeding strategies and to identify their strengths and putative limitations for future challenges. We conclude that selection for grain carotenoid content, the main strength for the tritordeum commercialization, should be reinforced not only by using the diversity of H. chilense but also incorporating beneficial alleles from durum wheat. Furthermore, genes for stem rust resistance from the A and B wheat genomes must be incorporated into tritordeum breeding programme. Finally, when selecting for threshability, tritordeums without chromosome substitutions should be preferentially selected using a marker‐assisted selection approach. [ABSTRACT FROM AUTHOR]

Salinity is a significant environmental stress that adversely impacts plant growth and productivity, posing a significant challenge for sustainable agriculture. While the role of silicon (Si) in enhancing plant resilience against various stresses, including salinity, has been recognized, its specific effects on sea barley (Hordeum marinum) under saline conditions require further exploration. The originality of this study lies in its detailed analysis of ROS detoxification and the enhancement of antioxidant defenses, aspects that have not been extensively studied in Hordeum marinum before. This study provides novel insights into the potential of silicon (0.5 mM Na2SiO3) to mitigate the adverse impacts of salinity (150 mM NaCl) on sea barley. The findings showed that under salt stress, growth parameters, soluble protein levels, and antioxidant enzyme activities such as Superoxide Dismutase (SOD), Catalase (CAT), and Guaiacol Peroxidase (GPX) were significantly reduced. Additionally, the levels of hydrogen peroxide (H2O2) and lipid peroxidation increased under saline conditions. Interestingly, silicon supply effectively counteracted these detrimental effects by improving plant growth, water status, soluble protein content, and antioxidant enzyme activities and reducing H2O2 and malondialdehyde (MDA) contents. Importantly, this study reveals that silicon enhanced salt tolerance in sea barley, in particular through the detoxification of reactive oxygen species and the stimulation of antioxidant defense mechanisms. This study underscores the potential of incorporating silicon in agricultural practices to enhance crop resilience and productivity in salt-affected regions, thus offering significant socioeconomic benefits to the agricultural sector. [ABSTRACT FROM AUTHOR]

Hordeum spontaneum is a winter annual weed that reduces crop yields in Iran. The aim of this study was to quantitatively analyze the effects of burial on seed longevity and germinability and of water potential and temperature on germination. Seeds were placed in nylon‐mesh bags and buried in soil in a semi‐arid region on 1 July 2018 and exposed to natural temperature regimes. After 2 months of burial, seed viability started to decline with a slope of 0.0169%, and after 9 months all seeds were nonviable. Fresh seeds were dormant, but became non‐dormant during summer via dry after‐ripening. Thus, by late autumn (December) the seeds germinated to 100% in dark at 5 and 15°C. The base, optimum, and ceiling temperatures were 0.27, 17.5, and 25°C, respectively, at a water potential of 0 MPa. The hydrotime constant was 50.6–426.9 MPa h, base water potential −1.23 to −0.333 MPa and hydrothermal constant 1350.5 MPa °C h. These results can be used to predict timing and extent of weed emergence of H. spontaneum in crops and in planning for sustainable management strategies. [ABSTRACT FROM AUTHOR]

Knowing the accession's qualitative and quantitative genetic variability is the prerequisite for the trait's improvement for any barley (Hordeum vulgare L.) improvement programs. This study aimed to investigate the agronomic and yield trait performance. The field experiment was conducted in Gumer for the years 2021/2022 and 2022/2023 using the augmented block design with the data of 319 barley genotypes, including nine check entries and using eight blocks in rain‐fed conditions. A total of 23 both qualitative and quantitative traits were measured. The chi‐square test analysis showed significant genotypic variation for all qualitative traits. The significant differences (p < 0.001) in all the quantitative traits except for plant height, spike length, and harvest index. There was sizeable quantitative variation among the genotypes indicating the need to exploit a high degree of genetic variation through selection. The first four principal component analyses accounted for 64.82% of the total variation and the cluster analysis discriminated the barley into four discrete clusters. The correlation coefficient indicated significant differences among the correlations of the 10 quantitative traits. Furthermore, G6, G214, and G255 for earliness and G182, G126, and G44 for grain yield. Both qualitative and quantitative traits made it possible to locate potential new sources of genetic variation. Certain barley was thought to be possible sources of various agronomic traits, such as drought tolerance. The characterized Ethiopian landraces can be used to improve barley resilience against climate change and associated conditions and are recommended in breeding programs to improve productivity under different breeding objectives. Core Ideas: Knowing barely landraces genetic variability is the prerequisite for the traits improvement.Barely single‐head progenies using the augmented block design (ABD) is very efficient.The first four principal component analyses accounted for 64.82% of the total variation.The cluster analysis discriminated the barely landraces into four discrete clusters.The characterized Ethiopian landraces can be used to improve barley resilience against climate change. [ABSTRACT FROM AUTHOR]

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Alternative barley genotypes can be a source of genetic variability for breeding and raw material for functional food production. The reaction of these genotypes to diverse sowing densities is unknown. The study aimed to assess the response in physiological characteristics of alternative barley genotypes Hordeum vulgare var. rimpaui and H. v. var. nigricans to increasing sowing density. In a strict field experiment, two barley genotypes and five sowing densities were tested: 250, 300, 350, 400, and 450 grains m-2. Chlorophyll fluorescence indices, relative chlorophyll content (SPAD), and leaf area index (LAI) were assessed. The interaction of the study year, genotype, and sowing density significantly shaped the physiological indices of the canopy. When rainfall was deficient, the plants reduced their leaf area but had higher SPAD and PIabs of the flag leaf. In the year with optimal rainfall, LAI increased with increasing sowing density. In the dry year, PIabs of the flag leaf in H. v. var. rimpaui was the highest at 250 grains m-2 and decreased with increasing density, and in H. v. var. nigricans, it only reduced at 450 grains m-2 A strong negative relationship was observed between LAI and SPAD, as well as between LAI and PIabs. Sowing density had a significant effect on grain yield per plant, which was related to the physiological response. However, the genotypes tested responded differently to this factor. The results may by prove for agricultural practice and scientific research, particularly in relation to the optimal sowing density of alternative barley genotypes and the identification of density-tolerant genotypes in response to varying environmental conditions. [ABSTRACT FROM AUTHOR]

Barley grass (Hordeum leporinum), which often occurs in proximity to commercial barley (H. vulgare) cultivars, is an alternative host to Pyrenophora teres, an economically important pathogen causing net blotch in barley. This study is the first to report the sexual recombination of P. teres isolates collected from barley with those collected from barley grass. The sexual recombination between P. teres isolates from barley and barley grass was confirmed using a neighbor-net network and haploblock plots based on whole-genome sequencing of seven progeny isolates. Pathogenicity assays revealed that P. teres isolates from barley grass were not host specific and could infect both barley and barley grass, and the progeny isolates were virulent on commercially grown barley cultivars. Our results contradict previous population and pathogenicity studies of P. teres isolates obtained from barley and barley grass that have reported that the two populations are genetically distinct and host specific, suggesting that isolates collected from barley or barley grass could be two different entities. Despite the genetic divergence of P. teres isolates from barley and barley grass revealed through our phylogenomic analysis, there seems to be no complete host or reproductive separation between these populations. Therefore, there is a potential for generation of novel pathotypes through sexual recombination between P. teres isolates associated with barley and barley grass, with a risk of increased impacts on commercial barley cultivars that do not carry resistance to these pathotypes. [ABSTRACT FROM AUTHOR]

Societal Impact Statement: Understanding domestication's impact on crop root traits and interactions with soil microbiomes is vital for improving crop resilience and agricultural sustainability. Using this knowledge to enhance root systems, reduce chemical inputs, and adapt crops to environmental stress will help to increase global food production, promote eco‐friendly farming, and mitigate the effects of climate change. Additionally, identifying microorganisms specific to plant species may help in biodiversity conservation. Advancing scientific understanding and educating future generations on the intricate relationships between plants, soil, and microorganisms is integral to developing innovative, sustainable agricultural practices and improved food security. Summary: Domestication and intensive management practices have significantly shaped characteristics of modern crops. However, our understanding of domestication's impact had mainly focused on aboveground plant traits, neglecting root and rhizospheric traits, as well as trait–trait interactions and root‐microbial interactions.To address this knowledge gap, we grew modern (Hordeum vulgare L. var. Barke) and wild barley (Hordeum spontaneum K. Koch var. spontaneum) in large rhizoboxes. We manipulated the soil microbiome by comparing disturbed (sterilized soil inoculum, DSM) versus non‐disturbed (non‐sterilized inoculum, NSM) microbiome. Results showed that modern barley grew faster and increased organic‐carbon exudation (OCEXU) compared to wild barley.Both barley species exhibited accelerated root growth and enhanced OCEXU under DSM, indicating their ability to partially compensate and exploit the soil resources independently of microbes if need be. Plant trait network analysis revealed that modern barley had a denser, larger, and less modular network of microbes than wild barley indicating domestication's impact on trait–trait coordination. In addition, the relative abundance of bacteria did not vary between wild and modern barley rhizospheres; however, species‐specific unique bacteria were identified, with stronger effects under DSM.Overall, our findings highlight domestication‐driven shifts in root traits, trait coordination, and their modulation by the soil microbiome. [ABSTRACT FROM AUTHOR]

Background: Russian wildrye (RWR, Psathyrostachys juncea) is an outcrossing perennial grass that plays a crucial role in foragaing and rangeland restoration due to its tiller producing capabilities, nevertheless, a genetic map has yet to be constructed due to a shortage of efficient and reliable molecular markers. This also limits the identification, localization, and cloning of economically important traits related to tiller density during breeding. Methods: Therefore, this study aimed to create a F1 mapping population with 147 individual lines and their two parents, which were selected based on varying tiller densities. We then used this mapping population to conduct specific-locus amplified fragment sequencing (SLAF-seq) to generate SLAF markers and discover single nucleotide polymorphisms (SNPs). Results: Initially, we generated a total of 1,438.38 million pair-end reads with an average sequencing depth of 84.92 in the maternal line, 79.34 in the parental line, and 27.05 in each F1 individual line, respectively. Following the filtering of low-depth SLAF tags, a total of 558,344 high-quality SLAFs were identified. A total of 1,519,903 SNP markers were obtained, and 62,424 polymorphic SNPs were discovered. From these, 4,644 polymorphic SNPs were selected and used for the construction of a genetic map encompassing seven linkage groups. The genetic map spanned 1,416.60 cM with an average distance of 0.31 cM between adjacent markers. Comparative analysis between the seven linkage groups of RWR SLAF tag and the whole-genome sequences in barley (Hordeum vulgare L.) revealed homology values ranging from 17.5% to 34.6%, and the collinearity between the RWR linkage groups and the barley homology groups ranged from 0.6787 to 0.9234, with an average value of 0.8158. Additionally, 143 significant quantitative trait locus (QTLs) with Logarithm of Odds (LOD) value greater than 2.5 for five tiller related traits were detected using three consecutive years of phenotypic trait data from the F1 population, further verifying the map's reliability. [ABSTRACT FROM AUTHOR]

Hordeum pusillum (Hordeum pusillum Nutt., 1818) is an annual barley that is native to the west of the North America and widespread in southern United States and tropical America. In this study, we have provided the first complete characterization of the chloroplast genome of H. pusillum. Our research revealed that the circular chloroplast genome of H. pusillum consists of a large single-copy region (LSC: 80,853 bp), a small single-copy region (SSC: 12,745 bp), and a pair of inverted repeat regions (IRs: 21,587 bp), totaling 136,772 bp in length. Within the chloroplast genome of H. pusillum, 91 protein-coding genes, 38 tRNA genes, and ten rRNA genes were identified. To determine the evolutionary relationship of Hordeum species with reported chloroplast genome sequences, we constructed a phylogenetic tree using the entire chloroplast genome sequences. The evolutionary position of H. pusillum corresponds to its geographical location. The chloroplast genome of H. pusillum provided in this study may have significant implications for the phylogenetic study of Poaceae species. [ABSTRACT FROM AUTHOR]

ABSTRACT Stomatal aperture is driven by changes in turgor of the guard cells that surround the stomatal pore. Epidermal cells immediately surrounding the guard cells are thought to contribute to the kinetics of aperture changes through changes in their turgor that opposes the guard cells and thought their putative roles in solute storage for use by the guard cells. Nonetheless, our knowledge remains fragmentary of surrounding cell mechanics, in large part because the tools and strategies needed to target the surrounding cells independent of the guard cells are limited. Here, we have analyzed sets of promoters for Arabidopsis, Brassica, and barley that will allow physiological studies of the roles of epidermal cells and also surrounding cells in the case of barley in stomatal behavior. These tissue‐specific promoters offer distinct advantages over widely used, constitutive promoters by enabling precise and targeted gene expression within guard cells and the adjacent epidermal cells. As genetic tools, the promoters will have applications in strategies centered on physiological analyses and differential comparisons following expression targeted between the guard cells and the foliar epidermis as a whole. As such, they are well suited to questions around the mechanics of solute and water flux that will advance an understanding of the stomatal complex in these model species.

This study examines the allelopathic effects of wild barley (Hordeum spontaneum) on the growth and yield of bread wheat (Triticum aestivum), barley (Hordeum vulgare), and wild barley (Hordeum spontaneum). The experiment was conducted in a greenhouse at Shamamar-Hawler/Kurdistan Region of Iraq using a complete randomized factorial design (CRD) within 3 replications. The roots, shoots, and seeds of wild barley were dried, powdered, and added to the soil at different concentrations (0%, 10%, 20%, 30%, and 40%) in 500 g pots. Each pot was planted with 5 seeds, which were later reduced to 3 seedlings. Growth parameters such as shoot and root lengths, dry weights, number of tillers, weight of spikes, seeds number per plant, and biological yield was measured. The results indicated significant effects of wild barley residues on the studied crops. Wheat showed the highest roots, shoots and total lengths were (29.56 cm, 17.05 cm and 46.58 cm, respectively) and the highest shoots and roots dry weights were (0.24 g and 0.30 g). Barley showed the highest number of stems (1.96) but the lowest shoots and dry weights of roots were (0.11 g and 0.23 g). Wild barley had the highest biological weight and harvest index (HI). Among the plant parts, seed extracts significantly enhanced growth parameters, while roots and shoots extract had the greatest inhibitory effects as wild barley residue concentrations increased. Nevertheless, the HI showed a decline as the concentrations increased, suggesting a detrimental effect on growth efficiency. The study shows the potential of wild barley as a bio-herbicide, emphasizing its allelopathic effects. This suggests that agricultural practices should be carefully considered to maximize the efficiency of crops. Incorporating these results into precision agriculture can greatly improve crop management and increase yield. [ABSTRACT FROM AUTHOR]

In this study, plant samples of eight different ecotypes of three distinct species of the genus Hordeum were collected at the anthesis stage of the plants in the 2023 spring in Southeastern Anatolia's natural grassland and pasture ecology. The quality analyses of the herbage samples of Hordeum bulbosum, H. murinum, and H. spontaneum ecotypes collected from five different locations (KaracadagI, Batman-1, Diyarbakır-6, Diyarbakır-8, and Diyarbakır-13) were determined by NIRS analyzer. Crude protein (CP), dry matter (DM), acid detergent insoluble fiber (ADF), neutral detergent insoluble fiber (NDF), acid detergent insoluble protein (ADP), Ca, K, Mg, P, Ca/P, K/(Ca+Mg), digestible dry matter (DDM), dry matter intake (DMI) and relative feed values (RFV) were determined. The values were determined between 8.2-23.4% for CP; 92.1-93.4% for DM; 19.3- 36.2% for ADF; 26.2-71.9% for NDF; 0.16-0.71% for ADP; 60.7-73.9% for DDM; 1.67-4.58% for DMI; 78.6-262.8 for RFV; 0.30-0.42% for P; 1.72-2.84% for K; 0.12-1.62% for Ca; 0.17-0.30% for Mg; 0.33-3.84 for Ca/P; 2.76-4.77 for K/(Ca+Mg). In conclusion, the CP, ADF, NDF, DMI, RFV, and Ca/P values were found very variable in collected ecotypes and can be used for forage barley breeding purposes. [ABSTRACT FROM AUTHOR]

The use of wild species as a source of genetic variability is a valued tool in the framework of crop breeding. Hordeum chilense Roem. et Schult is a wild barley species that can be a useful genetic donor for sustainable wheat breeding which carries genes conferring resistance to some diseases or increasing grain quality, among others. Septoria tritici blotch (STB), caused by the Zymoseptoria tritici fungus, is one of the most important wheat diseases worldwide, affecting both bread and durum wheat and having a high economic impact. Resistance to STB has been previously described in H. chilense chromosome 4Hch. In this study, we have developed introgression lines for H. chilense chromosome 4Hch in durum wheat using interspecific crosses, advanced backcrosses, and consecutive selfing strategies. Alien H. chilense chromosome segments have been reduced in size by genetic crosses between H. chilense disomic substitution lines in durum wheat and durum wheat lines carrying the Ph1 deletion. Hordeum chilense genetic introgressions were identified in the wheat background through several plant generations by fluorescence in situ hybridisation (FISH) and simple sequence repeat (SSR) markers. An STB infection analysis has also been developed to assess STB resistance to a specific H. chilense chromosome region. The development of these H. chilense introgression lines with moderate to high resistance to STB represents an important advance in the framework of durum breeding and can be a valuable tool for plant breeders. [ABSTRACT FROM AUTHOR]

Barley is one of the founder crops of the Neolithic transition in West Asia. While recent advances in genomics have provided a rather detailed picture of barley domestication, there are contradictory views on how the domestication process affected genetic diversity. We set out to revisit this question by integrating public DNA sequencing data from ancient barley and wide collections of extant wild and domesticated accessions. Using two previously overlooked approaches – analyses of chloroplast genomes and genome‐wide proportions of private variants – we found that the barley cultivated six millennia ago was genetically unique and more diverse when compared to extant landraces and cultivars. Moreover, the chloroplast genomes revealed a link between the ancient barley, an obscure wild genotype from north‐eastern Libya, and a distinct population of barley cultivated in Ethiopia/Eritrea. Based on these results, we hypothesize past existence of a wider North African population that included both wild and cultivated types and suffered from genetic erosion in the past six millennia, likely due to a rapid desertification that ended the Holocene African humid period. Besides providing clues about the origin of Ethiopian landraces, the hypothesis explains the post‐domestication loss of diversity observed in barley. Analyses of additional samples will be necessary to resolve the history of African barley and its contribution to the extant cultivated gene pool. [ABSTRACT FROM AUTHOR]

A lack of reliable winter hardiness has impeded the adoption of winter barley (Hordeum vulgare L.) in much of the northern United States. Direct selection for winter survival is time consuming and often unreliable. In addition, because survival is a binary trait, selection towards small quantitative gains can be difficult. One solution to these challenges is to identify indirect selection traits: anatomical or physiological characteristics which can be measured in the absence of winter stress, but which contribute to improved winter survival. Here, we survey a range of winter and spring barley, as well as winter wheat, winter rye, and perennial species of the genus Hordeum, all of which are more winter hardy than barley, to identify traits associated with winter survival. We identified several traits as promising candidates for selection. These included crown depth and leaf metaxylem diameter, which previous studies have identified as indirect selection traits. New candidates identified by our study include crown diameter and leaf midvein and blade thickness, as well as a suite of traits which suggest a pattern of reduced and efficient investment in above-ground structures. The effect of these traits on winter survival need to be validated and quantified by further experiments, but they represent a promising early step in a potentially valuable breeding strategy. [ABSTRACT FROM AUTHOR]

Powdery mildew‐resistant barley (Hordeum vulgare) and Arabidopsis thaliana mlo mutant plants exhibit pleiotropic phenotypes such as the spontaneous formation of callose‐rich cell wall appositions and early leaf chlorosis and necrosis, indicative of premature leaf senescence. The exogenous factors governing the occurrence of these undesired side effects remain poorly understood. Here, we characterised the formation of these symptoms in detail. Ultrastructural analysis revealed that the callose‐rich cell wall depositions spontaneously formed in A. thaliana mlo mutants are indistinguishable from those induced by the bacterial pattern epitope, flagellin 22 (flg22). We further found that increased plant densities during culturing enhance the extent of the leaf senescence syndrome in A. thaliana mlo mutants. Application of a liquid fertiliser rescued the occurrence of leaf chlorosis and necrosis in both A. thaliana and barley mlo mutant plants. Controlled fertilisation experiments uncovered nitrogen as the macronutrient whose deficiency promotes the extent of pleiotropic phenotypes in A. thaliana mlo mutants. Light intensity and temperature had a modulatory impact on the incidence of leaf necrosis in the case of barley mlo mutant plants. Collectively, our data indicate that the development of pleiotropic phenotypes associated with mlo mutants is governed by various exogenous factors. Summary Statement: We analysed the environmental factors that modulate the extent of pleiotropic phenotypes associated with powdery mildew‐resistant mlo mutants in barley and Arabidopsis thaliana. We discovered that in particular plant crowding and the lack of the macronutrient nitrogen promote their occurence. [ABSTRACT FROM AUTHOR]

The aim of the research was to assess the allelopathic potential of certain species for weed control in climbing bean crop. Field trials were carried out to examine the allelopathic impacts of the following allelopathic species: white clover (Trifolium repens), red clover (Trifolium pratense), sainfoin (Onobrychis viciifolia), oil radish (Raphanus sativus var. oleiformis), yellow mustard (Sinapis alba), oats (Avena sativa), barley (Hordeum vulgare), two-rowed barley (Hordeum distichon) and Japanese grass (Lolium perene, Festuca rubra and Poa pratensis). These species were sown with "Auria Bacăului" climbing bean (Phaseolus vulgaris) on intercropping system. It has been observed that main weed species identified in climbing bean crop were: red-root amaranth (Amaranthus retroflexus), cockspur (Echinochloa crus-galli), Canada thistle (Cirsium arvense), perennial sow thistle (Sonchus arvensis), pale knotweed (Persicaria lapathifolia), groundsel (Senecio vulgaris), bindweed (Convolvulus arvensis), guasca (Galinsoga parviflora), flower-of-an-hour (Hibiscus trionum) and petty spurge (Euphorbia peplus). In conclusion, intercropping beans with allelopathic species such as red clover, yellow mustard, and oil radish, along with red clover, oats, sainfoin, two-rowed barley and barley, resulted in a substantial diminishment in weed infestation. [ABSTRACT FROM AUTHOR]

Helwingia, a shrub of the monotypic cosmopolitan family Helwingiaceae, is distinguished by its inflorescence, in which flowers are borne on the midrib of the leaf—a trait not commonly observed in related plant families. Previous studies have investigated the development of this unusual structure using comparative anatomical methods. However, the scarcity of genomic data has hindered our understanding of the origins and evolutionary history of this uncommon trait at the molecular level. Here, we report the first high-quality genome of the family Helwingiaceae. Assembled using HiFi sequencing and Hi-C technologies, the genome of H. omeiensis is anchored to 19 chromosomes, with a total length of 2.75 Gb and a contig N50 length of 6.78 Mb. The BUSCO completeness score of the assembled genome was 98.2%. 53,951 genes were identified, of which 99.7% were annotated in at least one protein database. The high-quality reference genome of H. omeiensis provides an essential genetic resource and sheds light on the phylogeny and evolution of specific traits in the family Helwingiaceae. [ABSTRACT FROM AUTHOR]

BACKGROUND: In temperate regions, aphid biological control in greenhouses is mostly achieved by the regular release of biocontrol agents. Due to the rapid growth rate of the aphid population, biocontrol agents must be released frequently in order to be present before pest outbreaks and to act rapidly to prevent exceeding the economic threshold. Banker plants reduce these numerous releases by providing natural enemies with a high‐quality environment to develop and reproduce. Optimally, banker plants should be easy to produce, resistant to environmental conditions, provide a large amount of suitable banker prey in order to produce a high number of biocontrol agents, and resist the herbivory pressure of the banker prey. The present study aimed to compare the value of three banker plant candidates of the Poaceae family under laboratory and greenhouse conditions: barley (Hordeum vulgare L.), finger millet (Eleusine coracana (L.) Gaertn), and corn (Zea mays L.). RESULTS: Our results show that the three plants were suitable for different contexts. Finger millet yielded the biggest fresh plant biomass, supported the highest load of banker prey, and resisted aphid feeding longer than the other plant species. Corn was the cheapest to produce, and barley was the fastest to grow. CONCLUSIONS: Overall, finger millet could be more fitted for long crop cycles, pests with rapid population growth rates, and voracious or fast‐reproducing biocontrol agents. Meanwhile, barley and corn may be better suited for rapid crop cycles, pests with slow population growth rates, and biocontrol agents that are not too voracious or have low reproductive rates. © 2024 The Authors. Pest Management Science published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry. [ABSTRACT FROM AUTHOR]

Since its discovery in 2016, the Polerovirus Barley virus G has been reported in at least nine countries and multiple species of monocot plants. All of these reports have used PCR and/or sequencing based assays to identify BVG, however none have investigated the biology of BVG. In this study we detail the generation of the first infectious cDNA clone of BVG from archived RNA, thereby producing a valuable experimental tool and system for studying BVG biology. Using this system we identified two compatible aphid vectors and confirmed the susceptibility of several monocot plants, and the dicotyledonous plant host Nicotiana benthamiana, to BVG.

Summary The barley disease Septoria Speckled Leaf Blotch, caused by the fungus Zymoseptoria passerinii, last appeared in North America in the early 2000s. Although rare in crops, field sampling of wild grasses in the Middle East revealed the disease persistence in wild barley. Identification of Z. passerinii in various wild barley species prompted us to examine genomic signatures of host specialization and trace the emergence of the domesticated‐barley‐infecting lineage. Furthermore, we applied virulence assays and confocal laser microscopy to evaluate whether the disease development differs between wild and domesticated barley. Wild‐ and domesticated‐host‐infecting populations have diverged, and phylogenetic relationships support the evolution of sympatric host‐specialized lineages in wild hosts. Cross‐virulence assays showed that Z. passerinii from domesticated hosts infect domesticated barley and its wild ancestor, Hordeum spontaneum. However, wild isolates from Iran did not infect domesticated barley. Wild and domesticated pathosystems have similar disease timing and progression, suggesting its persistence does not depend on a shorter period of incubation. The study supports that a wide range of hosts can foster the evolution of host‐specialized lineages in sympatry and provide novel insights into the evolution of understudied fungal pathogens on wild hosts. [ABSTRACT FROM AUTHOR]

In this study, wild barley (Hordeum brevisubulatum) infected (E+) and uninfected (E-) by Epichloë bromicola were used for hydroponic experiments during the seedling stage. Various attributes, such as the effect of fungal endophyte on the growth and development of wild barley, the absorption of cadmium (Cd) and mineral elements (Ca, Mg, Fe, Mn, Cu, Zn), subcellular distribution, and chemical forms were investigated under CdCl2 stress. The results showed that the fungal endophy significantly reduced the Ca content and percentage of plant roots under Cd stress. The Fe and Mn content of roots, the mineral element content of soluble fractions, and the stems in the pectin acid or protein-chelated state increased significantly in response to fungal endophy. Epichloë endophyte helped Cd2+ to enter into plants; and reduced the positive correlation of Ca-Fe and Ca-Mn in roots. In addition, it also decreased the correlation of soluble components Cd-Cu, Cd-Ca, Cd-Mg in roots, and the negative correlation between pectin acid or protein-chelated Cd in stems and mineral elements, to increase the absorbance of host for mineral elements. In conclusion, fungal endophy regulated the concentration and distribution of mineral elements, while storing more Cd2+ to resist the damage caused by Cd stress. The study could provide a ground for revealing the Cd tolerance mechanism of endophytic fungal symbionts. The present study is the first to study the effect of fungal endophy on essential mineral elements of plants under heavy metal stress, filling a gap in the existing research. The study could be helpful to reveal the mechanism of endophytic fungi to improve the host's tolerance to heavy metals and provide a foundation for the grass-endophyte symbionts to improve heavy metal-contaminated soils as ecological grasses. [ABSTRACT FROM AUTHOR]

Hexaploid tritordeum [×Tritordeum martinii A. Pujadas (Poaceae) nothosp. nov.; HchHchAABB] resulted from crosses between wild barley (Hordeum chilense Roem et. Schultz) and durum wheat [Triticum turgidum L. ssp. durum (Desf.) Husn.]. Tritordeum (HT) presents interesting agronomic traits that can be transferred to cultivated wheat. Through the years, several HT lines were developed and characterised. Genomic stability and fertility are expected for advanced HT lines with multiple self‐fertilisation generations. In this work, we analysed the meiotic chromosomal pairing in pollen mother cells (PMCs) of three advanced lines of hexaploid tritordeum (HT9, HT31 and HT67) after fluorescence in situ hybridisation (FISH) performed with genomic DNA from H. chilense and the bread wheat cloned rDNA sequence, pTa71, as probes, and characterised nine morphological and yield‐related traits for three consecutive years in adult plants. As expected, all HT lines showed regular meiotic chromosomal pairing, ensuring plant fertility as previously confirmed by the characterisation of morphological and yield‐related traits in adult plants of preceding generations. Globally, tritordeum is interesting for wheat breeding and has potential as an alternative crop. [ABSTRACT FROM AUTHOR]

Glycerol-3-phosphoacyltransferase (GPAT) is an important rate-limiting enzyme in the biosynthesis of triacylglycerol (TAG), which is of great significance for plant growth, development, and response to abiotic stress. Although the characteristics of GPAT have been studied in many model plants, little is known about its expression profile and function in barley, especially under abiotic stress. In this study, 22 GPAT genes were identified in the barley genome and divided into three groups (I, II, III), with the latter Group III subdivided further into three subgroups based on the phylogenetic analysis. The analyses of conserved motifs, gene structures, and the three-dimensional structure of HvGPAT proteins also support this classification. Through evolutionary analysis, we determined that HvGPATs in Group I were the earliest to diverge during 268.65 MYA, and the differentiation of other HvGPATs emerged during 86.83–169.84 MYA. The tissue expression profile showed that 22 HvGPAT genes were almost not expressed in INF1 (inflorescence 1). Many functional elements related to stress responses and hormones in cis-element analysis, as well as qRT-PCR results, confirm that these HvGPAT genes were involved in abiotic stress responses. The expression level of HvGPAT18 was significantly increased under abiotic stress and its subcellular localization indicated its function in the endoplasmic reticulum. Various physiological traits under abiotic stress were evaluated using transgenic Arabidopsis to gain further insight into the role of HvGPAT18, and it was found that transgenic seedlings have stronger resistance under abiotic stress than to the wild-type (WT) plants. Overall, our results provide new insights into the evolution and function of the barley GPAT gene family and enable us to explore the molecular mechanism of functional diversity behind the evolutionary history of these genes. [ABSTRACT FROM AUTHOR]

Barley has a rich nutritional and therapeutic profile. In an era of life-style based silent pandemics, the need to bring on table the convenient food products with sensory and nutritional acceptability is necessary. Hence, the present study aimed to develop an instant chilla mix from a novel hull-less variety of barley (Hordeum vulgare) (PL891). Various random combinations of composite flour (barley flour (BF), rice flour (RF) and gram flour (GF)) were prepared namely T1 (100:00:00), T2 (70:15:15), T3 (60:30:10), T4 (33:33:33), and T5 (00:00:100). Other ingredients such as onion, tomato, ginger, garlic, coriander, and chilli were also added. Nutritional and sensory parameters at fresh, three, six and nine month of storage interval were also analyzed. The assessed parameters (%) were reported as moisture (6.91±0.02 to 10.21±0.09), ash (2.11±0.05 to 3.10±0.02), protein (7.59±0.05 to 24.50±0.06), fat (1.50±0.02 to 6.10±0.04), crude fiber (1.08±0.02 to 2.87±0.02), and total carbohydrates (58.21±0.10 to 75.27±0.07). All the blends varied significantly (p=0.05) during storage in terms of moisture, protein, fat, crude fiber, and carbohydrates, while a non-significant difference was noted in ash for all the treatments. Blending also affected the nutrient content of all the treatments significantly (P = 0.05) depending upon the ratio of blending and composition of various ingredients in the product. The sensory attributes indicated that T2 blend with 70% PL891 hull-less barley flour was most acceptable. The developed product will be a nutritious substitute for chapati as barley is rich in numerous nutrients and have therapeutic potentials. [ABSTRACT FROM AUTHOR]

Background and Aims Internal root aeration is essential for root growth in waterlogged conditions. Aerenchyma provides a path for oxygen to diffuse to the roots. In most wetland species, including rice, a barrier to radial oxygen loss (ROL) allows more of the oxygen to diffuse to the root tip, enabling root growth into anoxic soil. Most dryland crops, including barley, do not form a root ROL barrier. We previously found that abscisic acid (ABA) signalling is involved in the induction of ROL barrier formation in rice during waterlogging. Although rice typically does not form a tight ROL barrier in roots in aerated conditions, an ROL barrier with suberized exodermis was induced by application of exogenous ABA. Therefore, we hypothesized that ABA application could also trigger root ROL barrier formation with hypodermal suberization in barley. Methods Formation of an ROL barrier was examined in roots in different exogenous ABA concentrations and at different time points using cylindrical electrodes and Methylene Blue staining. Additionally, we evaluated root porosity and observed suberin and lignin modification. Suberin, lignin and Casparian strips in the cell walls were observed by histochemical staining. We also evaluated the permeability of the apoplast to a tracer. Key Results Application of ABA induced suberization and ROL barrier formation in the adventitious roots of barley. The hypodermis also formed lignin-containing Casparian strips and a barrier to the infiltration of an apoplastic tracer (periodic acid). However, ABA application did not affect root porosity. Conclusions Our results show that in artificial conditions, barley can induce the formation of ROL and apoplastic barriers in the outer part of roots if ABA is applied exogenously. The difference in ROL barrier inducibility between barley (an upland species) and rice (a wetland species) might be attributable to differences in ABA signalling in roots in response to waterlogging conditions. [ABSTRACT FROM AUTHOR]

The HD-ZIP class I transcription factor Homeobox 1 (HvHOX1), also known as Vulgare Row-type Spike 1 (VRS1) or Six-rowed Spike 1, regulates lateral spikelet fertility in barley (Hordeum vulgare L.). It was shown that HvHOX1 has a high expression only in lateral spikelets, while its paralog HvHOX2 was found to be expressed in different plant organs. Yet, the mechanistic functions of HvHOX1 and HvHOX2 during spikelet development are still fragmentary. Here, we show that compared with HvHOX1 , HvHOX2 is more highly conserved across different barley genotypes and Hordeum species, hinting at a possibly vital but still unclarified biological role. Using bimolecular fluorescence complementation, DNA-binding, and transactivation assays, we validate that HvHOX1 and HvHOX2 are bona fide transcriptional activators that may potentially heterodimerize. Accordingly, both genes exhibit similar spatiotemporal expression patterns during spike development and growth, albeit their mRNA levels differ quantitatively. We show that HvHOX1 delays the lateral spikelet meristem differentiation and affects fertility by aborting the reproductive organs. Interestingly, the ancestral relationship of the two genes inferred from their co-expressed gene networks suggested that HvHOX1 and HvHOX2 might play a similar role during barley spikelet development. However, CRISPR-derived mutants of HvHOX1 and HvHOX2 demonstrated the suppressive role of HvHOX1 on lateral spikelets, while the loss of HvHOX2 does not influence spikelet development. Collectively, our study shows that through the suppression of reproductive organs, lateral spikelet fertility is regulated by HvHOX1, whereas HvHOX2 is dispensable for spikelet development in barley. [ABSTRACT FROM AUTHOR]

The study investigated compounds present in the invasive grass Hordeum murinum L. subsp. murinum and tested the allelopathic potential of this plant against common meadow species Festuca rubra L. and Trifolium repens L. Gas chromatography–mass spectrometry (GC–MS) performed separately on the ears and stalks with leaves of wall barley revealed 32 compounds, including secondary metabolites, that may play an important role in allelopathy. Two compounds, N-butylbenzenesulfonamide (NBBS) and diphenylsulfone (DDS), were described for the first time for wall barley and the Poaceae family. The presence of 6,10,14-trimethylpentadecan-2-one (TMP) has also been documented. Aqueous extracts of H. murinum organs (ears and stalks with leaves) at concentrations of 2.5%, 5%, and 7.5% were used to evaluate its allelopathic potential. Compared to the control, all extracts inhibited germination and early growth stages of meadow species. The inhibitory effect was strongest at the highest concentration for both the underground and aboveground parts of the seedlings of the meadow species tested. Comparing the allelopathic effect, Trifolium repens proved to be more sensitive. In light of the results of the study, the removal of wall barley biomass appears to be important for the restoration of habitats where this species occurs due to its allelopathic potential. [ABSTRACT FROM AUTHOR]

Rosa centifolia L. and Rosa gallica L. (Rosaceae) are grown as raw materials for valuable essential oils and hydrosols. There are scarce data about the biological activities and the genoprotective potential of the hydrosols of these roses. The aim of the study was to provide information on their cytotoxic/genotoxic activity and anti-cytotoxic/anti-genotoxic capacity against mutagenic N-methyl-N′-nitro-N-nitrosoguanidine (MNNG). The evaluation was performed using classical tests for chromosomal aberrations and micronuclei in the higher plant Hordeum vulgare and human lymphocyte test systems. The experimental schemes included combined hydrosol and mutagen treatment. Both hydrosols (6, 14, 20%) had no cytotoxic effect on barley and showed low genotoxicity in both test systems as the injuries were enhanced to a lesser extent compared to the controls. Lymphocytes were more susceptible than H. vulgare. Under the conditions of combined treatment, it was found that the two hydrosols possessed good anti-cytotoxic and anti-genotoxic potential against MNNG. Both rose products exerted genoprotective potential to a similar extent, decreasing the frequencies of aberrations in chromosomes and micronuclei to a significant degree in both types of cells when non-toxic concentrations of hydrosols were applied before MNNG. This was performed both with and without any inter-treatment time. The observed cytoprotective/genoprotective potential suggests that these hydrosols are promising for further application in phytotherapy and medicine. [ABSTRACT FROM AUTHOR]

We represent a comparative analysis of GBSS1 gene fragment sequences for a number of species related to Elymus caninus: Elymus prokudinii, Elymus viridiglumis, Elymus goloskokovii, as well as a number of morphologically deviating biotypes, inhabiting Russia and Kazakhstan. Microevolutionary relationships between species were assessed from dendrograms derived from sequences of exons and introns. In all taxa, the St subgenome was represented by St2 variants, rather typical of the North American ancestral line of Pseudoroegneria spicata than of the Asian line descending from Pseudoroegneria strigosa. All putative relatives of E. caninus had H1 subgenome variants linked around the Asian diploid carrier of the H genome from Hordeum jubatum and were divided into two subclades. One of them (H1‐1) contained most of the closely related E. caninus clones, including Elymus uralensis. Another subclade (H1‐2) consisted of five variants phylogenetically related to Elymus mutabilis. We have also studied reproductive relationships between species E. goloskokovii, E. prokudinii, and E. viridiglumis and the degree of their integration into the E. caninus complex. Biotypes included in sexual hybridization formed a single recombination gene pool, within which slight differences in reproductive compatibility were observed. A comprehensive study of microevolutionary differentiation of taxa showed the expediency of taxonomic revision. The species mentioned should probably be relegated to the infraspecific rank within E. caninus s. l. [ABSTRACT FROM AUTHOR]

The current investigation aims to underline the impact of salicylic acid or calcium chloride seed pre-treatments on mineral status and oxidative stress markers, namely levels of electrolyte leakage (EL) and lipid peroxidation levels, measured as thiobarbituric reactive substances (TBARS), and the activity of some antioxidant enzymes in roots and leaves of plants in two barley species grown under various salt treatments. Overall, our results revealed that salinity inhibits essential nutrient absorption such as iron, calcium, magnesium and potassium and stimulates the absorption of sodium. Also, this environmental constraint induced oxidative stress in plants in comparison with the control conditions. This state of oxidative stress is reflected by an increase in TBARS content as well as the stimulation of EL values. In addition, salinity induced disturbances in the activity of antioxidant enzymes, which were mainly dependent on the applied salt concentration and the species. In addition, Hordeum marinum maintained high antioxidant enzyme activity and low levels of oxidative stress parameters, which reinforces its salt-tolerant character. Importantly, salicylic acid or calcium chloride seed priming alleviated the mineral imbalance and the oxidative damage induced by salinity. Moreover, seed priming improves iron, calcium magnesium and potassium content and limitsthe accumulation of sodium. Also, both treatments not only decrease TBARS levels and limit EL, but they also stimulate the antioxidant enzyme activities in the leaves and roots of the stressed plants as compared with stressed plants grown from non-primed seeds. Interestingly, the beneficial effects of the mentioned treatments were more notable on Hordeum vulgare species. [ABSTRACT FROM AUTHOR]

Summary: Global agriculture faces increasing pressure to produce more food with fewer resources. Drought, exacerbated by climate change, is a major agricultural constraint costing the industry an estimated US$80 billion per year in lost production. Wild relatives of domesticated crops, including wheat (Triticum spp.) and barley (Hordeum vulgare L.), are an underutilized source of drought tolerance genes. However, managing their undesirable characteristics, assessing drought responses, and selecting lines with heritable traits remains a significant challenge. Here, we propose a novel strategy of using multi‐trait selection criteria based on high‐throughput spectral images to facilitate the assessment and selection challenge. The importance of measuring plant capacity for sustained carbon fixation under drought stress is explored, and an image‐based transpiration efficiency (iTE) index obtained via a combination of hyperspectral and thermal imaging, is proposed. Incorporating iTE along with other drought‐related variables in selection criteria will allow the identification of accessions with diverse tolerance mechanisms. A comprehensive approach that merges high‐throughput phenotyping and de novo domestication is proposed for developing drought‐tolerant prebreeding material and providing breeders with access to gene pools containing unexplored drought tolerance mechanisms. [ABSTRACT FROM AUTHOR]

Background: Acyl-CoA-Binding proteins (ACBPs) function as coenzyme A transporters and play important roles in regulating plant growth and development in response to abiotic stress and phytohormones, as well as in membrane repair. To date, the ACBP family has not been a comprehensively characterized in barley (Hordeum vulgare L.). Results: Eight ACBP genes were identified in the barley genome and named as HvACBP1–8. The analysis of the proteins structure and promoter elements of HvACBP suggested its potential functions in plant growth, development, and stress response. These HvACBPs are expressed in specific tissues and organs following induction by abiotic stressors such as drought, salinity, UV-B exposure, temperature extremes, and exposure to exogenous phytohormones. The HvACBP7 and HvACBP8 amino acid sequences were conserved during the domestication of Tibetan Qingke barley. Conclusions: Acyl-CoA-binding proteins may play important roles in barley growth and environmental adaptation. This study provides foundation for further analyses of the biological functions of HvACBPs in the barley stress response. [ABSTRACT FROM AUTHOR]

Nitrogen (N) is an essential element for plant growth and development. The identification and utilization of N use efficiency (NUE) loci are essential for breeding high NUE cultivars. In this study, 15 NUE traits were measured in a recombinant inbred line population containing 121 lines derived from the cross between a cultivated barley (Baudin) and a wild barley (CN4027). The hydroponic culture was conducted with normal N and low N treatments in one‐time frame, and field trials were conducted with N sufficiency and N deficiency treatments in two growing seasons. Twenty‐two quantitative trait loci (QTLs) and four clusters were detected. Of them, the five stable QTLs Qgna.sau‐3H for grain N concentration, Qtna.sau‐3H for total N accumulation per plant, Qnhi.sau‐3H for N harvest index, Qnutegy.sau‐3H for N utilization efficiency for grain yield and Qanutedm.sau‐3H.1 for N utilization efficiency for aboveground dry matter were co‐located on chromosome 3H flanked by the markers bpb6282426 and bpb4786261. These two novel QTL clusters simultaneously controlled NUE traits at the seedling and maturity stages. Some genes related to NUE traits in intervals of the major QTLs were predicted. The significant relationships between NUE traits and agronomic and physiological traits were detected and discussed. In conclusion, this study uncovers the most promising genomic regions for the marker‐assisted selection of NUE traits to improve NUE in barley. [ABSTRACT FROM AUTHOR]

Context: Identification of salt-tolerant genetic resources is of high importance due to the constant increase in salt-affected areas. Aims: This study was conducted to assess genetic variation in salt response among and within Tunisian sea barley populations and to identify useful genotypes for future breeding programmes directed towards improving salinity tolerance. Methods: The salinity response of 141 lines from 10 natural populations of Hordeum marinum ssp. marinum was characterised at a morphophysiological level, following exposure to 200 mM sodium chloride for 90 days. Key results: ANOVA revealed significant differences in growth and ion accumulation between and within populations in response to salinity. The Sebkhet Ferjouna population was less affected than Sidi Othman and Tabarka; however, it accumulated relatively higher sodium and lower potassium and potassium/sodium ratio. Stress Tolerance Index (STI) and Salt Tolerance (ST) values varied significantly among populations and lines. STI was positively correlated with potassium and negatively correlated with sodium content in roots and leaves, whereas no evidence of a relationship between both cations and ST was observed. Conclusions: SO7, SO28, LB5, LB25, TB1, MT3 and BK12 with high values of STI were identified as high yielding lines in control and salt stress conditions, whereas MT3, BK12, MT17, BF10, SL8, SL16 and SF32, with the highest values of ST, were characterised by a small yield loss and low sensitivity when exposed to salinity. Implications: These lines constitute a genetic resource with desirable adaptation characteristics for breeding programmes towards salinity tolerance in cultivated cereals. Soil salinity adversely affects plant growth and causes considerable losses in cereal crops. In this study, genetic variation in salinity tolerance was evaluated in sea barley (Hordeum marinum ssp. marinum). Based on plant growth-related traits, mineral nutrition and salt stress indices, lines with high yield under stress and non-stress conditions, or showing a small yield loss under salinity constraints, were identified. These lines will be useful for future breeding programs towards salinity tolerance in cereal crops. [ABSTRACT FROM AUTHOR]

Continuous spring cropping of Qingke (Hordeum viilgare L. var. nudum Hook. f.) results in a reduction in grain yield in the Xizang autonomous region. However, knowledge on the influence of continuous cropping on grain yield caused by reactive oxygen species (ROS)-induced stress remains scarce. A systematic comparison of the antioxidant defensive profile at seedling, tillering, jointing, flowering, and filling stages (T1 to T5) of Qingke was conducted based on a field experiment including 23-year continuous cropping (23y-CC) and control (the first year planted) treatments. The results reveal that the grain yield and superoxide anion (SOA) level under 23y-CC were significantly decreased (by 38.67% and 36.47%), when compared to the control. The hydrogen peroxide content under 23y-CC was 8.69% higher on average than under the control in the early growth stages. The higher ROS level under 23y-CC resulted in membrane lipid peroxidation (LPO) and accumulation of malondialdehyde (MDA) at later stages, with an average increment of 29.67% and 3.77 times higher than that in control plants. Qingke plants accumulated more hydrogen peroxide at early developmental stages due to the partial conversion of SOA by glutathione (GSH) and superoxide dismutase (SOD) and other production pathways, such as the glucose oxidase (GOD) and polyamine oxidase (PAO) pathways. The reduced regeneration ability due to the high oxidized glutathione (GSSG) to GSH ratio resulted in GSH deficiency while the reduction in L-galactono-1,4-lactone dehydrogenase (GalLDH) activity in the AsA biosynthesis pathway, higher enzymatic activities (including ascorbate peroxidase, APX; and ascorbate oxidase, AAO), and lower activities of monodehydroascorbate reductase (MDHAR) all led to a lower AsA content under continuous cropping. The lower antioxidant capacity due to lower contents of antioxidants such as flavonoids and tannins, detected through both physiological measurement and metabolomics analysis, further deteriorated the growth of Qingke through ROS stress under continuous cropping. Our results provide new insights into the manner in which ROS stress regulates grain yield in the context of continuous Qingke cropping. [ABSTRACT FROM AUTHOR]

Gastrointestinal disorders are one of the most common conditions among people in many societies. On the other hand, evidence shows that the prevalence of usage of complementary and alternative medicine (CAM) has increased in recent years to treat many chronic and acute conditions, which might be due to testimonies of the safety, effectiveness, and affordability of CAM. In Persian medicine (PM), medical barley water (MBW) has been known as a helpful remedy for treating some digestive illnesses. This study aimed to review the properties of MBW in Avicenna’s Canon of Medicine for the treatment of gastrointestinal disorders. So, Avicenna’s Canon of Medicine was reviewed with keywords related to this remedy. Furthermore, various databases, including PubMed, Scopus, Web of Science, Google Scholar, and SID, were searched with the keywords “barley water," “non-alcoholic beer," and “alcohol-free beer." This study showed that Avicenna’s Canon of Medicine recommends MBW for the treatment of various gastrointestinal disorders. Avicenna prescribed barley water for the treatment of bowel obstruction disease, bowel mass, intestinal ulcers, and jaundice. Oral consumption of MBW was the most frequently used method for disease improvement. Meanwhile, recent studies have also shown the therapeutic effects of non-alcoholic beer in the treatment of various disorders, such as gastrointestinal inflammatory disease, cardiovascular disease, and diabetes, possibly due to its anti-inflammatory effect. Given the high importance of MBW in Avicenna’s Canon of Medicine, the results of this review and recent clinical studies can introduce MBW as an effective and less harmful gastrointestinal drug. We suggest conducting further clinical trials to assess the effectiveness of MBW in managing gastrointestinal conditions.

The distribution of recombination events along large cereal chromosomes is uneven and is generally restricted to gene-rich telomeric ends. To understand how the lack of recombination affects diversity in the large pericentromeric regions, we analysed deep exome capture data from a final panel of 815 Hordeum vulgare (barley) cultivars, landraces and wild barleys, sampled from across their eco-geographical ranges. We defined and compared variant data across the pericentromeric and non-pericentromeric regions, observing a clear partitioning of diversity both within and between chromosomes and germplasm groups. Dramatically reduced diversity was found in the pericentromeres of both cultivars and landraces when compared with wild barley. We observed a mixture of completely and partially differentiated single-nucleotide polymorphisms (SNPs) between domesticated and wild gene pools, suggesting that domesticated gene pools were derived from multiple wild ancestors. Patterns of genome-wide linkage disequilibrium, haplotype block size and number, and variant frequency within blocks showed clear contrasts among individual chromosomes and between cultivars and wild barleys. Although most cultivar chromosomes shared a single major pericentromeric haplotype, chromosome 7H clearly differentiated the two-row and six-row types associated with different geographical origins. Within the pericentromeric regions we identified 22 387 non-synonymous SNPs, 92 of which were fixed for alternative alleles in cultivar versus wild accessions. Surprisingly, only 29 SNPs found exclusively in the cultivars were predicted to be 'highly deleterious'. Overall, our data reveal an unconventional pericentromeric genetic landscape among distinct barley gene pools, with different evolutionary processes driving domestication and diversification.

As one of the US Department of Agriculture-Agricultural Research Service flagship databases, GrainGenes (https://wheat.pw.usda.gov) serves the data and community needs of globally distributed small grains researchers for the genetic improvement of the Triticeae family and Avena species that include wheat, barley, rye and oat. GrainGenes accomplishes its mission by continually enriching its cross-linked data content following the findable, accessible, interoperable and reusable principles, enhancing and maintaining an intuitive web interface, creating tools to enable easy data access and establishing data connections within and between GrainGenes and other biological databases to facilitate knowledge discovery. GrainGenes operates within the biological database community, collaborates with curators and genome sequencing groups and contributes to the AgBioData Consortium and the International Wheat Initiative through the Wheat Information System (WheatIS). Interactive and linked content is paramount for successful biological databases and GrainGenes now has 2917 manually curated gene records, including 289 genes and 254 alleles from the Wheat Gene Catalogue (WGC). There are >4.8 million gene models in 51 genome browser assemblies, 6273 quantitative trait loci and >1.4 million genetic loci on 4756 genetic and physical maps contained within 443 mapping sets, complete with standardized metadata. Most notably, 50 new genome browsers that include outputs from the Wheat and Barley PanGenome projects have been created. We provide an example of an expression quantitative trait loci track on the International Wheat Genome Sequencing Consortium Chinese Spring wheat browser to demonstrate how genome browser tracks can be adapted for different data types. To help users benefit more from its data, GrainGenes created four tutorials available on YouTube. GrainGenes is executing its vision of service by continuously responding to the needs of the global small grains community by creating a centralized, long-term, interconnected data repository. Database URL:https://wheat.pw.usda.gov.

The development of next-generation sequencing technologies has provided new opportunities for genotyping various organisms, including plants. Genotyping by sequencing (GBS) is used to identify genetic variability more rapidly, and is more cost-effective than whole-genome sequencing. GBS has demonstrated its reliability and flexibility for a number of plant species and populations. It has been applied to genetic mapping, molecular marker discovery, genomic selection, genetic diversity studies, variety identification, conservation biology and evolutio nary studies. However, reduction in sequencing time and cost has led to the need to develop efficient bioinformatics analyses for an ever-expanding amount of sequenced data. Bioinformatics pipelines for GBS data analysis serve the purpose. Due to the similarity of data processing steps, existing pipelines are mainly characterised by a combination of software packages specifically selected either to process data for certain organisms or to process data from any organisms. However, despite the usage of efficient software packages, these pipelines have some disadvantages. For example, there is a lack of process automation (in some pipelines, each step must be started manually), which significantly reduces the performance of the analysis. In the majority of pipelines, there is no possibility of automatic installation of all necessary software packages; for most of them, it is also impossible to switch off unnecessary or completed steps. In the present work, we have developed a GBS-DP bioinformatics pipeline for GBS data analysis. The pipeline can be applied for various species. The pipeline is implemented using the Snakemake workflow engine. This implementation allows fully automating the process of calculation and installation of the necessary software packages. Our pipeline is able to perform analysis of large datasets (more than 400 samples).

The purpose of the work was to study the effect of the experimental microbiological product ‘Naturost-Aktiv’, developed on the basis of live bacteria Lactobacillus buchneri, on barley growth and productivity in the Vologda region. The study was carried out during the vegetation periods of 2019, 2020 and 2022 on the experimental field of the FSBIS «Vologda Research Center of the Russian Academy of Sciences», as well as in production conditions on the fields of the APC Collective farm «Peredovoy» (Vologda Region). The product ‘Naturost-Aktiv’ was applied twice, when the seeds of the experimental group were soaked in the working solution (1 ml of the product per 1 liter of water) and the phyllosphere of the plants was sprayed in the tillering phase. Tap water was used as control. As a result, there has been identified an increase in the potential energy supply of barley. The area of an individual leaf of experimental plants exceeded the control by 16 %, and the content of the total chlorophylls (a+b) exceeded by 34–42 %, which contributed to a more active accumulation of dry mass of experimental plants in comparison with the control (duringthe action of the product there was an increase in the dry weight of the plant by 12–65 % relative to the control). The changes in the plant growth processes also affected the grain productivity, which increased by 8–26 % in the variants with the product compared to the control. The results of the production experiment, in general, turned out to be like the results of small-plot experiments. Thus, in the conditions of real management, grain productivity of the barley variety ‘Sonet’ increased by 14 % with the use of the product ‘Naturost-Aktiv’ relative to the control. Grain productivity improvement was associated both with an increase in the number of productive shoots and with an increase in the weight of an individual grain.

Background: Barley (H. vulgare L.) is an important cereal crop cultivated across various climates globally. Barley and its ancestor (H. vulgare subsp. spontaneum) are an economically valuable model for genetic research and improvement. Drought, among various abiotic stresses, is a substantial threat to agriculture due to its unpredictable nature and significant impact on crop yield. Results: This study was conducted in both greenhouse and laboratory settings. Prior to the study, wild barley accessions were pre-selected based on their sensitivity or tolerance to drought as determined from fieldwork in the 2020–2021 and 2021–2022 cropping seasons. The effects of three levels of drought stress were evaluated (control, 90–95% field capacity [FC]; mild stress, 50–55% FC; and severe stress, 25–30% FC). Several parameters were assessed, including seedling and root growth, enzymatic activity (CAT, SOD, POD), soluble protein levels, chlorophyll content, carotenoids, abaxial and adaxial stomatal density and dimensions, and relative gene expression of Dhn1, SOD, POD, and CAT. Drought stress significantly increased enzyme activities, especially at 25–30% FC, and more in the tolerant genotype. On the other hand, sensitive genotypes showed a notable increase in stomatal density. Under drought stress, there was a general decline in seedling and root growth, protein content, chlorophyll and carotenoids, and stomatal dimensions. Importantly, gene expression analysis revealed that Dhn1, SOD, POD, and CAT were upregulated under drought, with the highest expression levels observed in the drought-tolerant genotype under severe stress conditions (25–30% FC). Conclusions: Our investigation highlights the distinct morphological, physiological, biochemical, and gene-expression profiles of drought-resistant and drought-sensitive wild barley genotypes under varying degrees of drought. [ABSTRACT FROM AUTHOR]