8 results on '"iterative forecasting"'
Search Results
2. Forecasting global spread of invasive pests and pathogens through international trade.
- Author
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Montgomery, Kellyn, Walden‐Schreiner, Chelsey, Saffer, Ariel, Jones, Chris, Seliger, Benjamin J., Worm, Thom, Tateosian, Laura, Shukunobe, Makiko, Kumar, Sunil, and Meentemeyer, Ross K.
- Subjects
INTERNATIONAL trade ,BIOLOGICAL invasions ,SPOTTED lanternfly ,PLANT parasites ,PESTS ,PHYTOPATHOGENIC microorganisms - Abstract
Non‐native plant pests and pathogens threaten biodiversity, ecosystem function, food security, and economic livelihoods. As new invasive populations establish, often as an unintended consequence of international trade, they can become additional sources of introductions, accelerating global spread through bridgehead effects. While the study of non‐native pest spread has used computational models to provide insights into drivers and dynamics of biological invasions and inform management, efforts have focused on local or regional scales and are challenged by complex transmission networks arising from bridgehead population establishment. This paper presents a flexible spatiotemporal stochastic network model called PoPS (Pest or Pathogen Spread) Global that couples international trade networks with core drivers of biological invasions—climate suitability, host availability, and propagule pressure—quantified through open, globally available databases to forecast the spread of non‐native plant pests. The modular design of the framework makes it adaptable for various pests capable of dispersing via human‐mediated pathways, supports proactive responses to emerging pests when limited data are available, and enables forecasts at different spatial and temporal resolutions. We demonstrate the framework using a case study of the invasive planthopper spotted lanternfly (Lycorma delicatula). The model was calibrated with historical, known spotted lanternfly introductions to identify potential bridgehead populations that may contribute to global spread. This global view of phytosanitary pandemics provides crucial information for anticipating biological invasions, quantifying transport pathways risk levels, and allocating resources to safeguard plant health, agriculture, and natural resources. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
3. Forecasting global spread of invasive pests and pathogens through international trade
- Author
-
Kellyn Montgomery, Chelsey Walden‐Schreiner, Ariel Saffer, Chris Jones, Benjamin J. Seliger, Thom Worm, Laura Tateosian, Makiko Shukunobe, Sunil Kumar, and Ross K. Meentemeyer
- Subjects
biological invasions ,bridgehead effects ,international trade ,iterative forecasting ,network model ,plant pests and pathogens ,Ecology ,QH540-549.5 - Abstract
Abstract Non‐native plant pests and pathogens threaten biodiversity, ecosystem function, food security, and economic livelihoods. As new invasive populations establish, often as an unintended consequence of international trade, they can become additional sources of introductions, accelerating global spread through bridgehead effects. While the study of non‐native pest spread has used computational models to provide insights into drivers and dynamics of biological invasions and inform management, efforts have focused on local or regional scales and are challenged by complex transmission networks arising from bridgehead population establishment. This paper presents a flexible spatiotemporal stochastic network model called PoPS (Pest or Pathogen Spread) Global that couples international trade networks with core drivers of biological invasions—climate suitability, host availability, and propagule pressure—quantified through open, globally available databases to forecast the spread of non‐native plant pests. The modular design of the framework makes it adaptable for various pests capable of dispersing via human‐mediated pathways, supports proactive responses to emerging pests when limited data are available, and enables forecasts at different spatial and temporal resolutions. We demonstrate the framework using a case study of the invasive planthopper spotted lanternfly (Lycorma delicatula). The model was calibrated with historical, known spotted lanternfly introductions to identify potential bridgehead populations that may contribute to global spread. This global view of phytosanitary pandemics provides crucial information for anticipating biological invasions, quantifying transport pathways risk levels, and allocating resources to safeguard plant health, agriculture, and natural resources.
- Published
- 2023
- Full Text
- View/download PDF
4. Increased adoption of best practices in ecological forecasting enables comparisons of forecastability.
- Author
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Lewis, Abigail S. L., Woelmer, Whitney M., Wander, Heather L., Howard, Dexter W., Smith, John W., McClure, Ryan P., Lofton, Mary E., Hammond, Nicholas W., Corrigan, Rachel S., Thomas, R. Quinn, and Carey, Cayelan C.
- Subjects
ECOLOGICAL forecasting ,BEST practices ,FORECASTING - Abstract
Near‐term iterative forecasting is a powerful tool for ecological decision support and has the potential to transform our understanding of ecological predictability. However, to this point, there has been no cross‐ecosystem analysis of near‐term ecological forecasts, making it difficult to synthesize diverse research efforts and prioritize future developments for this emerging field. In this study, we analyzed 178 near‐term (≤10‐yr forecast horizon) ecological forecasting papers to understand the development and current state of near‐term ecological forecasting literature and to compare forecast accuracy across scales and variables. Our results indicated that near‐term ecological forecasting is widespread and growing: forecasts have been produced for sites on all seven continents and the rate of forecast publication is increasing over time. As forecast production has accelerated, some best practices have been proposed and application of these best practices is increasing. In particular, data publication, forecast archiving, and workflow automation have all increased significantly over time. However, adoption of proposed best practices remains low overall: for example, despite the fact that uncertainty is often cited as an essential component of an ecological forecast, only 45% of papers included uncertainty in their forecast outputs. As the use of these proposed best practices increases, near‐term ecological forecasting has the potential to make significant contributions to our understanding of forecastability across scales and variables. In this study, we found that forecastability (defined here as realized forecast accuracy) decreased in predictable patterns over 1–7 d forecast horizons. Variables that were closely related (i.e., chlorophyll and phytoplankton) displayed very similar trends in forecastability, while more distantly related variables (i.e., pollen and evapotranspiration) exhibited significantly different patterns. Increasing use of proposed best practices in ecological forecasting will allow us to examine the forecastability of additional variables and timescales in the future, providing a robust analysis of the fundamental predictability of ecological variables. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
5. Making Recursive Bayesian Inference Accessible.
- Author
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Hooten, Mevin B., Johnson, Devin S., and Brost, Brian M.
- Subjects
- *
MARKOV chain Monte Carlo - Abstract
Bayesian models provide recursive inference naturally because they can formally reconcile new data and existing scientific information. However, popular use of Bayesian methods often avoids priors that are based on exact posterior distributions resulting from former studies. Two existing Recursive Bayesian methods are: Prior- and Proposal-Recursive Bayes. Prior-Recursive Bayes uses Bayesian updating, fitting models to partitions of data sequentially, and provides a way to accommodate new data as they become available using the posterior from the previous stage as the prior in the new stage based on the latest data. Proposal-Recursive Bayes is intended for use with hierarchical Bayesian models and uses a set of transient priors in first stage independent analyses of the data partitions. The second stage of Proposal-Recursive Bayes uses the posteriors from the first stage as proposals in a Markov chain Monte Carlo algorithm to fit the full model. We combine Prior- and Proposal-Recursive concepts to fit any Bayesian model, and often with computational improvements. We demonstrate our method with two case studies. Our approach has implications for big data, streaming data, and optimal adaptive design situations. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
6. Developing an automated iterative near‐term forecasting system for an ecological study.
- Author
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Lopez‐Sepulcre, Andres, Yenni, Glenda M., Christensen, Erica M., Simonis, Juniper L., White, Ethan P., Ernest, S. K. Morgan, Taylor, Shawn D., and Bledsoe, Ellen K.
- Subjects
ECOLOGY ,ACQUISITION of data ,AUTOMATION ,INFRASTRUCTURE (Economics) ,COMPUTER software development - Abstract
Most forecasts for the future state of ecological systems are conducted once and never updated or assessed. As a result, many available ecological forecasts are not based on the most up‐to‐date data, and the scientific progress of ecological forecasting models is slowed by a lack of feedback on how well the forecasts perform.Iterative near‐term ecological forecasting involves repeated daily to annual scale forecasts of an ecological system as new data becomes available and regular assessment of the resulting forecasts. We demonstrate how automated iterative near‐term forecasting systems for ecology can be constructed by building one to conduct monthly forecasts of rodent abundances at the Portal Project, a long‐term study with over 40 years of monthly data. This system automates most aspects of the six stages of converting raw data into new forecasts: data collection, data sharing, data manipulation, modelling and forecasting, archiving, and presentation of the forecasts.The forecasting system uses R code for working with data, fitting models, making forecasts, and archiving and presenting these forecasts. The resulting pipeline is automated using continuous integration (a software development tool) to run the entire pipeline once a week. The cyberinfrastructure is designed for long‐term maintainability and to allow the easy addition of new models. Constructing this forecasting system required a team with expertise ranging from field site experience to software development.Automated near‐term iterative forecasting systems will allow the science of ecological forecasting to advance more rapidly and provide the most up‐to‐date forecasts possible for conservation and management. These forecasting systems will also accelerate basic science by allowing new models of natural systems to be quickly implemented and compared to existing models. Using existing technology, and teams with diverse skill sets, it is possible for ecologists to build automated forecasting systems and use them to advance our understanding of natural systems. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
7. Increased adoption of best practices in ecological forecasting enables comparisons of forecastability
- Author
-
Whitney M. Woelmer, Rachel S. Corrigan, Dexter W. Howard, Cayelan C. Carey, Mary E. Lofton, Nicholas Hammond, Heather L. Wander, R. Quinn Thomas, Ryan P. McClure, John W. Smith, and Abigail S. L. Lewis
- Subjects
Chlorophyll ,Decision support system ,decision support ,INFORMATION ,Computer science ,near-term forecast ,PREDICTION ,Best practice ,forecast uncertainty ,Ecological forecasting ,forecast horizon ,uncertainty partitioning ,Data assimilation ,ecological predictability ,open science ,Econometrics ,Production (economics) ,Predictability ,data assimilation ,POPULATION ,Ecosystem ,Ecology ,Null model ,null model ,Uncertainty ,Plant Transpiration ,forecast evaluation ,Field (geography) ,OPPORTUNITIES ,MODEL ,iterative forecasting ,Phytoplankton ,Pollen ,forecast automation ,Forecasting - Abstract
Near-term iterative forecasting is a powerful tool for ecological decision support and has the potential to transform our understanding of ecological predictability. However, to this point, there has been no cross-ecosystem analysis of near-term ecological forecasts, making it difficult to synthesize diverse research efforts and prioritize future developments for this emerging field. In this study, we analyzed 178 near-term (≤10-yr forecast horizon) ecological forecasting papers to understand the development and current state of near-term ecological forecasting literature and to compare forecast accuracy across scales and variables. Our results indicated that near-term ecological forecasting is widespread and growing: forecasts have been produced for sites on all seven continents and the rate of forecast publication is increasing over time. As forecast production has accelerated, some best practices have been proposed and application of these best practices is increasing. In particular, data publication, forecast archiving, and workflow automation have all increased significantly over time. However, adoption of proposed best practices remains low overall: for example, despite the fact that uncertainty is often cited as an essential component of an ecological forecast, only 45% of papers included uncertainty in their forecast outputs. As the use of these proposed best practices increases, near-term ecological forecasting has the potential to make significant contributions to our understanding of forecastability across scales and variables. In this study, we found that forecastability (defined here as realized forecast accuracy) decreased in predictable patterns over 1–7 d forecast horizons. Variables that were closely related (i.e., chlorophyll and phytoplankton) displayed very similar trends in forecastability, while more distantly related variables (i.e., pollen and evapotranspiration) exhibited significantly different patterns. Increasing use of proposed best practices in ecological forecasting will allow us to examine the forecastability of additional variables and timescales in the future, providing a robust analysis of the fundamental predictability of ecological variables. Published version
- Published
- 2021
8. Increased adoption of best practices in ecological forecasting enables comparisons of forecastability
- Author
-
Lewis, Abigail S. L., Woelmer, Whitney M., Wander, Heather L., Howard, Dexter W., Smith, John W., McClure, Ryan P., Lofton, Mary E., Hammond, Nicholas W., Corrigan, Rachel S., Thomas, R. Quinn, Carey, Cayelan C., Lewis, Abigail S. L., Woelmer, Whitney M., Wander, Heather L., Howard, Dexter W., Smith, John W., McClure, Ryan P., Lofton, Mary E., Hammond, Nicholas W., Corrigan, Rachel S., Thomas, R. Quinn, and Carey, Cayelan C.
- Abstract
Near-term iterative forecasting is a powerful tool for ecological decision support and has the potential to transform our understanding of ecological predictability. However, to this point, there has been no cross-ecosystem analysis of near-term ecological forecasts, making it difficult to synthesize diverse research efforts and prioritize future developments for this emerging field. In this study, we analyzed 178 near-term (≤10-yr forecast horizon) ecological forecasting papers to understand the development and current state of near-term ecological forecasting literature and to compare forecast accuracy across scales and variables. Our results indicated that near-term ecological forecasting is widespread and growing: forecasts have been produced for sites on all seven continents and the rate of forecast publication is increasing over time. As forecast production has accelerated, some best practices have been proposed and application of these best practices is increasing. In particular, data publication, forecast archiving, and workflow automation have all increased significantly over time. However, adoption of proposed best practices remains low overall: for example, despite the fact that uncertainty is often cited as an essential component of an ecological forecast, only 45% of papers included uncertainty in their forecast outputs. As the use of these proposed best practices increases, near-term ecological forecasting has the potential to make significant contributions to our understanding of forecastability across scales and variables. In this study, we found that forecastability (defined here as realized forecast accuracy) decreased in predictable patterns over 1–7 d forecast horizons. Variables that were closely related (i.e., chlorophyll and phytoplankton) displayed very similar trends in forecastability, while more distantly related variables (i.e., pollen and evapotranspiration) exhibited significantly different patterns. Increasing use of proposed best prac
- Published
- 2021
- Full Text
- View/download PDF
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