7 results on '"molecular doking"'
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2. Aldose Reductase Evaluation against Diabetic Complications Using ADME and Molecular Docking Studies and DFT Calculations of Spiroindoline Derivative Molecule.
- Author
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GÖREN, Kenan and YILDIKO, Ümit
- Subjects
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ELECTROSTATIC accelerators , *NONLINEAR optics , *DENSITY functional theory , *MOLECULAR docking , *MOLECULAR shapes - Abstract
In this study, the target molecule ethyl-2-(5-nitro-5'-(4-nitrophenyl)-2-oxo-3'H-spiro[indoline-3,2'-[1,3,4]oxadiazol]-1-yl)acetate, which is a spiroindoline derivative, were performed NBO analysis, molecular electrostatic potential surface (MEPS), nonlinear optics (NLO), HOMO-LUMO energy calculations, optimized molecular geometry, and mulliken atomic charges using B3LYP/B3PW91 basis set and 6-311G(d,p) approximations. Calculated results were reported. Density Functional Theory (DFT) computations were utilized to research the molecule theoretically. Moreover, molecular docking analysis of the tested compound, a spiroindoline derivative molecule targeting aldose reductase against diabetic complications, was performed using molecular docking to determine the structure- activity connection. The molecular docking scores of our study molecule showed good results of -6.83 (PDB ID:3ABV) and 6.78 (PDB ID:3AE2) kcal. The molecular docking study provided important information worth considering for further research. A notable outcome of bioisosteric and isosteric substitutions is the alteration in lipophilic character, an impressive characteristic in several aspects. Thus, utilizing SwissADME, lipophilic character assessments were performed for the concerned compounds. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
3. Computational and Retrosynthetic Investigation of Isoxazole‐Bearing Chalcones as Antioxidant Activate Compounds.
- Author
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Moukhliss, Youness, Koubi, Yassine, Alaqarbeh, Marwa, Muzzammel Rehman, Hafiz, Maghat, Hamid, Sbai, Abdelouahid, Bouachrine, Mohammed, and Lakhlifi, Tahar
- Subjects
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COMPARATIVE molecular field analysis , *CHALCONES , *MOLECULAR docking , *ISOXAZOLES , *DRUG interactions , *MOLECULAR dynamics - Abstract
Peroxiredoxin 5 (1HD2) is an antioxidant enzyme that catalyzes the decrease of peroxide, and act as a regulator of Redox signaling. It is a potential target for working on new antioxidants. 3D‐QSAR method was applied to a set of isoxazoles by using the comparative analysis of molecular fields (CoMFA and CoMSIA). Five new drug candidates (Pr1–Pr5) have been proposed. The study of the interactions between the drug candidate and antioxidant receptor 1HD2 was done by molecular docking. The results of the ADME (Absorption, Distribution, Metabolism, and Excretion) showed that these drug candidates are orally bioavailable and have high gastrointestinal absorption and good permeability. Molecular dynamics was used at 100 ns to study the stability of the MA‐1HD2 and Pr5‐1HD2 complexes obtained after molecular docking. Using the retrosynthesis approach, we have proposed a pathway for synthesizing the drug candidates. This study provides useful information on the antioxidant activity of isoxazole‐based compounds. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
4. Gamma-decanolactone: Preliminary evaluation as potential antiparkinsonian drug.
- Author
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Pflüger, Pricila, Pereira, Patrícia, Loza, María I., Brea, José, Viña, Dolores, Kumar, Amit, and Fontenla, José A.
- Subjects
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BIOAVAILABILITY , *DRUG target , *BODY temperature , *MONOAMINE oxidase , *PARKINSON'S disease , *CENTRAL nervous system , *BLOOD-brain barrier , *CARBIDOPA - Abstract
Treatment of Parkinson's disease (PD) includes the use of monoamine oxidase-B (MAO-B) inhibitor drugs. In this work we have evaluated the possible gamma-decanolactone (GD) effect in vitro to inhibit the A and B isoforms of human monoamine oxidase (hMAO) enzyme and their citotoxicity in human hepatoma cell line (HepG2). Also, binding studies to A 1 , A 2A A 2B and A 3 adenosine receptors were performed. A docking study of gamma-decanolactone has been carried out with the molecular targets of MAO-A and MAO-B isoforms. The physicochemical properties and ability to cross physiological barriers, as the blood brain barrier (BBB), was elucidated by computational studies. The in vivo assays, the rota-rod test, body temperature assessment and open field test were performed in reserpinized mice (1.5 mg/kg, i.p.; 18:00 before) to evaluate the effect of gamma-decanolactone (300 mg/kg), alone or associated with Levodopa plus Benserazide (LD + BZ, 100:25 mg/kg, i.p.). Gamma-decanolactone inhibited preferentially the MAO-B in a reversible manner, with an inhibitory concentration of 50% (IC 50) 55.95 ± 9.06 μM. It was shown to be a safe drug since only at the highest concentration decreased the viability of HepG2 cells. It also does not bind to adenosine receptors investigated in this study. The molecular docking study show that the gamma-decanolactone ligand adopts a relatively compact conformation in the active site of hMAO-B, while we note an extended conformation of gamma-decanolactone ligand in the hMAO-A isoform. The physicochemical properties obtained, and the theoretical models utilized for the evaluation of ability to cross the BBB, predict a good gamma-decanolactone bioavailability and access to the central nervous system (CNS). In the in vivo studies, gamma-decanolactone partially reversed the ataxia of the reserpinized mice at 01:00 h and 01:30 h post-administration. Concomitant treatment of gamma-decanolactone with LD + BZ, at 01:30 h showed a potentiation of the reversibility of ataxia and facilitated the reversal of hypothermia caused by reserpine for all measured times (P <0.01 vs vehicle), except at 24:00 h, but not reversed the hypokinesia in the open field test. In summary, the results herein obtained and in conjunction with previous studies, suggest that gamma-decanolactone could be a drug with potential utility as antiparkinsonian drug. • Gamma-decanolactone is a natural monoterpene with antiepileptic properties. • This monoterpene also now shows a profile as an antiparkinsonian drug. • The gamma-decanolactone resulted a selective MAO-B inhibitor, partially reversible, in the MAO in vitro studies performed. • Gamma-decanolactone does not bind to adenosine receptors. • Crosses the blood-brain barrier and reverses some of the effects of reserpine in the in vivo studies. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
5. Defining of lipophilicity, pharmacokinetic parameters and anticancer potential of newly synthesized series of styryl lactones
- Subjects
molecular doking ,QSAR ,QSPKR ,farmakokinetika ,QSPKR cytotoxicity ,Stiril laktoni ,QSRR ,lipofilnost ,lipophilicity ,citotoksičnost ,pharmacokinetic ,Styryl lactones ,molekulski doking ,SAR ,3D-QSAR - Abstract
Reverzno-faznom tečnom hromatografijom pod visokim pritiskom primenom dva sistemarastvarača ispitano je ponašanje i hromatografska lipofilnost prirodnih stiril laktona 7-(+)-goniofufurona, 7-epi-(+)-goniofufurona, krasalaktona B i C i dvadeset njihovihnovosintetizovanih derivata i analoga. U ranijim ispitivanjima pokazalo se da ova jedinjenjaimaju veliki biološki potencijal jer pokazuju zapaženu citotoksičnost prema više humanihtumorskih ćelijskih linija. Hromatografsko ponašanje jedinjenja uglavnom je u skladu sanjihovom strukturom. Ustanovljene su linearne veze između hromatografskih retencionihkonstanti i većine in silico parametara lipofilnosti. Primenom hemometrijske QSRR analizeutvrđeni su veoma dobri multi linearni regresioni prediktivni modeli kvantitativne zavisnostiizmeđu eksperimentalno dobijene hromatografske retencione konstante, koja definišeretenciju jedinjenja u čistoj vodi i in silico molekulskih deskriptora odnosno strukturejedinjenja. Lipofilnost jedinjenja ima najveći uticaj na njihove farmakokinetičke, tj. ADME(apsorpcija, distribucija, metabolizam, eliminacija) osobine. Definisani su i statističkipotvrđeni najbolji multi linearni regresioni modeli zavisnosti farmakokinetičkih parametarastiril laktona i od drugih molekulskih deskriptora. In vitro citotoksična aktivnost jedinjenjaevaluirana je prema četiri nove humane maligne ćelijske linije: kancer prostate (PC3), kancer debelog creva (HT-29), melanom (Hs294T), adenokancer pluća (A549). Najaktivnijenovosintetizovano jedinjenje je triciklični 4-fluorocinamatni analog, koji ispoljavananomolarnu aktivnost (IC50 2,1 nM) prema ćelijama melanoma i aktivniji je preko 2250 puta od komercijalnog antitumorskog agensa doksorubicina (DOX). SAR analizom utvrđena je zavisnost između strukture i biološke aktivnosti jedinjenja. Molekulskim dokingom ispitana je veza stiril laktona i ciljanog proteina značajnog za kancer prostate. Jedinjenja sa visokom inhibitornom aktivnošću prema ćelijama kancera prostate imaju visok doking skor i mogu graditi koordinativno-kovalentnu vezu sa Fe2+jonom prisutnim u aktivnom centru enzima. 3D-QSAR analizom, koja je izvedena metodama komparativnih polja CoMFA i CoMSIA, formiran je značajan prediktivni model između hemijske strukture i biološke aktivnosti stiril laktona., The behavior and the chromatographic lipophilicity natural styryl lactone 7-(+)-goniofufurone, 7-epi-(+)-goniofufurone, crassalactones B and C and twenty of their newlysynthesized derivatives and analogs were examined using reverse-phase high performance liquid chromatography in the two solvent systems. In previous studies it has been shown that these compounds have great biological potential toward several human tumor cell lines. Chromatographic behavior of the compounds is generally in accordance with their structure. The relationships between the chromatographic retention constants and the majority of their in silico lipophilicity parameters are linear. The application of chemometric QSRR analysis determined very good multiple linear regression predictive models of quantitative correlation between experimentally obtained chromatographic retention constant, which determines the retention of the compound in pure water and in silico molecular descriptors, i.e. the structure of the compound. The lipophilicity of the compounds has a major influence on their pharmacokinetics, i.e. ADME (absorption, distribution, metabolism, elimination) properties. The best multi-linear regression models depending on the pharmacokinetic parameters of styryl lactone and other molecular descriptors have been defined and statistically validated. In vitro cytotoxic activity of the compounds was evaluated according to four novel human malignant cell lines: prostate cancer (PC3), colon cancer (HT-29), melanoma (Hs294T), lung adenocarcinom (A549). The most active compound was tricyclic 4-fluorocinnamic analog, which exhibits a nanomolar activity (IC50 2,1 nM) toward melanoma cells. This compound is over 2250 times more active than commercial antitumor agent doxorubicin (DOX). SAR analysis has revealed a correlation between the structure and the biological activity of the compounds. Using the molecular docking the relationship of the styryl lactone and the target protein important for prostate cancer was examined. The compounds with high inhibitory activity against prostate cancer cells have a high docking score and are capable to form a coordinative-covalent bond with a Fe2+ ion present in the active centre of the enzyme. 3DQSAR analysis, which was performed by methods of comparative CoMFA and CoMSIA fields, has formed a good predictive model between chemical structure and biological activity of the styryl lactone.
- Published
- 2018
6. Definisanje lipofilnosti, farmakokinetičkih parametara i antikancerogenog potencijala novosintetisane serije stiril laktona
- Author
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Lončar, Davor, Jevrić, Lidija, Škrbić, Biljana, and Popsavin, Velimir
- Subjects
molecular doking ,Styryl lactones, lipophilicity, QSRR, pharmacokinetic, QSPKR cytotoxicity, SAR, molecular doking, QSAR, 3D-QSAR ,QSAR ,QSPKR ,Stiril laktoni, lipofilnost, QSRR, farmakokinetika, QSPKR, citotoksičnost, SAR, molekulski doking, QSAR, 3D-QSAR ,farmakokinetika ,QSPKR cytotoxicity ,Stiril laktoni ,QSRR ,lipofilnost ,lipophilicity ,citotoksičnost ,pharmacokinetic ,Styryl lactones ,molekulski doking ,SAR ,3D-QSAR - Abstract
Reverzno-faznom tečnom hromatografijom pod visokim pritiskom primenom dva sistemarastvarača ispitano je ponašanje i hromatografska lipofilnost prirodnih stiril laktona 7-(+)-goniofufurona, 7-epi-(+)-goniofufurona, krasalaktona B i C i dvadeset njihovihnovosintetizovanih derivata i analoga. U ranijim ispitivanjima pokazalo se da ova jedinjenjaimaju veliki biološki potencijal jer pokazuju zapaženu citotoksičnost prema više humanihtumorskih ćelijskih linija. Hromatografsko ponašanje jedinjenja uglavnom je u skladu sanjihovom strukturom. Ustanovljene su linearne veze između hromatografskih retencionihkonstanti i većine in silico parametara lipofilnosti. Primenom hemometrijske QSRR analizeutvrđeni su veoma dobri multi linearni regresioni prediktivni modeli kvantitativne zavisnostiizmeđu eksperimentalno dobijene hromatografske retencione konstante, koja definišeretenciju jedinjenja u čistoj vodi i in silico molekulskih deskriptora odnosno strukturejedinjenja. Lipofilnost jedinjenja ima najveći uticaj na njihove farmakokinetičke, tj. ADME(apsorpcija, distribucija, metabolizam, eliminacija) osobine. Definisani su i statističkipotvrđeni najbolji multi linearni regresioni modeli zavisnosti farmakokinetičkih parametarastiril laktona i od drugih molekulskih deskriptora. In vitro citotoksična aktivnost jedinjenjaevaluirana je prema četiri nove humane maligne ćelijske linije: kancer prostate (PC3), kancer debelog creva (HT-29), melanom (Hs294T), adenokancer pluća (A549). Najaktivnijenovosintetizovano jedinjenje je triciklični 4-fluorocinamatni analog, koji ispoljavananomolarnu aktivnost (IC50 2,1 nM) prema ćelijama melanoma i aktivniji je preko 2250 puta od komercijalnog antitumorskog agensa doksorubicina (DOX). SAR analizom utvrđena je zavisnost između strukture i biološke aktivnosti jedinjenja. Molekulskim dokingom ispitana je veza stiril laktona i ciljanog proteina značajnog za kancer prostate. Jedinjenja sa visokom inhibitornom aktivnošću prema ćelijama kancera prostate imaju visok doking skor i mogu graditi koordinativno-kovalentnu vezu sa Fe2+jonom prisutnim u aktivnom centru enzima. 3D-QSAR analizom, koja je izvedena metodama komparativnih polja CoMFA i CoMSIA, formiran je značajan prediktivni model između hemijske strukture i biološke aktivnosti stiril laktona., The behavior and the chromatographic lipophilicity natural styryl lactone 7-(+)-goniofufurone, 7-epi-(+)-goniofufurone, crassalactones B and C and twenty of their newlysynthesized derivatives and analogs were examined using reverse-phase high performance liquid chromatography in the two solvent systems. In previous studies it has been shown that these compounds have great biological potential toward several human tumor cell lines. Chromatographic behavior of the compounds is generally in accordance with their structure. The relationships between the chromatographic retention constants and the majority of their in silico lipophilicity parameters are linear. The application of chemometric QSRR analysis determined very good multiple linear regression predictive models of quantitative correlation between experimentally obtained chromatographic retention constant, which determines the retention of the compound in pure water and in silico molecular descriptors, i.e. the structure of the compound. The lipophilicity of the compounds has a major influence on their pharmacokinetics, i.e. ADME (absorption, distribution, metabolism, elimination) properties. The best multi-linear regression models depending on the pharmacokinetic parameters of styryl lactone and other molecular descriptors have been defined and statistically validated. In vitro cytotoxic activity of the compounds was evaluated according to four novel human malignant cell lines: prostate cancer (PC3), colon cancer (HT-29), melanoma (Hs294T), lung adenocarcinom (A549). The most active compound was tricyclic 4-fluorocinnamic analog, which exhibits a nanomolar activity (IC50 2,1 nM) toward melanoma cells. This compound is over 2250 times more active than commercial antitumor agent doxorubicin (DOX). SAR analysis has revealed a correlation between the structure and the biological activity of the compounds. Using the molecular docking the relationship of the styryl lactone and the target protein important for prostate cancer was examined. The compounds with high inhibitory activity against prostate cancer cells have a high docking score and are capable to form a coordinative-covalent bond with a Fe2+ ion present in the active centre of the enzyme. 3DQSAR analysis, which was performed by methods of comparative CoMFA and CoMSIA fields, has formed a good predictive model between chemical structure and biological activity of the styryl lactone.
- Published
- 2018
7. Definisanje lipofilnosti, farmakokinetičkih parametara i antikancerogenog potencijala novosintetisane serije stiril laktona
- Author
-
Jevrić, Lidija, Škrbić, Biljana, Popsavin, Velimir, Lončar, Davor, Jevrić, Lidija, Škrbić, Biljana, Popsavin, Velimir, and Lončar, Davor
- Abstract
Reverzno-faznom tečnom hromatografijom pod visokim pritiskom primenom dva sistema rastvarača ispitano je ponašanje i hromatografska lipofilnost prirodnih stiril laktona 7-(+)- goniofufurona, 7-epi-(+)-goniofufurona, krasalaktona B i C i dvadeset njihovih novosintetizovanih derivata i analoga. U ranijim ispitivanjima pokazalo se da ova jedinjenja imaju veliki biološki potencijal jer pokazuju zapaženu citotoksičnost prema više humanih tumorskih ćelijskih linija. Hromatografsko ponašanje jedinjenja uglavnom je u skladu sa njihovom strukturom. Ustanovljene su linearne veze između hromatografskih retencionih konstanti i većine in silico parametara lipofilnosti. Primenom hemometrijske QSRR analize utvrđeni su veoma dobri multi linearni regresioni prediktivni modeli kvantitativne zavisnosti između eksperimentalno dobijene hromatografske retencione konstante, koja definiše retenciju jedinjenja u čistoj vodi i in silico molekulskih deskriptora odnosno strukture jedinjenja. Lipofilnost jedinjenja ima najveći uticaj na njihove farmakokinetičke, tj. ADME (apsorpcija, distribucija, metabolizam, eliminacija) osobine. Definisani su i statistički potvrđeni najbolji multi linearni regresioni modeli zavisnosti farmakokinetičkih parametara stiril laktona i od drugih molekulskih deskriptora. In vitro citotoksična aktivnost jedinjenja evaluirana je prema četiri nove humane maligne ćelijske linije: kancer prostate (PC3), kancer debelog creva (HT-29), melanom (Hs294T), adenokancer pluća (A549). Najaktivnije novosintetizovano jedinjenje je triciklični 4-fluorocinamatni analog, koji ispoljava nanomolarnu aktivnost (IC50 2,1 nM) prema ćelijama melanoma i aktivniji je preko 2250 puta od komercijalnog antitumorskog agensa doksorubicina (DOX). SAR analizom utvrđena je zavisnost između strukture i biološke aktivnosti jedinjenja. Molekulskim dokingom ispitana je veza stiril laktona i ciljanog proteina značajnog za kancer prostate. Jedinjenja sa visokom inhibitornom aktivnošću prema ćelijama kance, The behavior and the chromatographic lipophilicity natural styryl lactone 7-(+)- goniofufurone, 7-epi-(+)-goniofufurone, crassalactones B and C and twenty of their newly synthesized derivatives and analogs were examined using reverse-phase high performance liquid chromatography in the two solvent systems. In previous studies it has been shown that these compounds have great biological potential toward several human tumor cell lines. Chromatographic behavior of the compounds is generally in accordance with their structure. The relationships between the chromatographic retention constants and the majority of their in silico lipophilicity parameters are linear. The application of chemometric QSRR analysis determined very good multiple linear regression predictive models of quantitative correlation between experimentally obtained chromatographic retention constant, which determines the retention of the compound in pure water and in silico molecular descriptors, i.e. the structure of the compound. The lipophilicity of the compounds has a major influence on their pharmacokinetics, i.e. ADME (absorption, distribution, metabolism, elimination) properties. The best multi-linear regression models depending on the pharmacokinetic parameters of styryl lactone and other molecular descriptors have been defined and statistically validated. In vitro cytotoxic activity of the compounds was evaluated according to four novel human malignant cell lines: prostate cancer (PC3), colon cancer (HT-29), melanoma (Hs294T), lung adenocarcinom (A549). The most active compound was tricyclic 4-fluorocinnamic analog, which exhibits a nanomolar activity (IC50 2,1 nM) toward melanoma cells. This compound is over 2250 times more active than commercial antitumor agent doxorubicin (DOX). SAR analysis has revealed a correlation between the structure and the biological activity of the compounds. Using the molecular docking the relationship of the styryl lactone and the target protein important for prosta
- Published
- 2018
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