547 results on '"multi-gene phylogeny"'
Search Results
2. Morpho-phylogenetic analyses of two novel edible mushrooms from China and a mini review of Lyophyllum (Agaricales, Lyophyllaceae) cultivation and bioactivities.
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Tang, Song-Ming, Yu, Feng-Ming, Karunarathna, Samantha C., Luo, Zong-Long, Niu, Kai-Yang, Li, Rui-Yu, Li, Lin, Su, Xi-Jun, and Li, Shu-Hong
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RNA polymerase II , *ELONGATION factors (Biochemistry) , *RIBOSOMAL RNA , *GENETIC translation , *BASIDIOSPORES , *RIBOSOMAL DNA - Abstract
Lyophyllum plays an important role in the natural ecosystem and has significant economic value. Some species of this genus have been cultivated in Asia, America, and Europe. This study describes four edible species of Lyophyllum, two of which were newly discovered. Lyophyllum edulis has a dark grayish orange pileus, a grayish orange upper part of the stipe, and globose, subglobose to broadly ellipsoid basidiospores, while L. sinense has a dark gray-orange when injured pileus, dark grayish orange points and lines on the stipe surface, and quadrangular to broadly fusiform basidiospores. Molecular phylogenetic analyses using the internal transcribed spacer ITS1-5.8S-ITS2 ribosomal RNA (ITS), the large subunit ribosomal RNA (LSU), the second-largest subunit of RNA polymerase II (rpb2), and translation elongation factor 1-alpha (tef1-α) indicated that L. edulis is related to L. shimeji, L. heimogu, and L. decastes, and L. sinense has an affinity to L. bulborhizum and L. nigrum. We also summarize the cultivation techniques of the two edible species, L. shimeji and L. decastes. [ABSTRACT FROM AUTHOR]
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- 2025
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3. Cytospora: an important genus of canker pathogens.
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Lin, L., Fan, X. L., Groenewald, J. Z., Jami, F., Wingfield, M. J., Voglmayr, H., Jaklitsch, W., Castlebury, L. A., Tian, C. M., and Crous, P. W.
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DNA sequencing ,PHYTOPATHOGENIC fungi ,NUMBERS of species ,FUNGI classification ,SPECIES diversity - Abstract
Cytospora species have commonly been reported as important plant pathogenic fungi with wide host ranges and geographic distributions. With the increase in the number of cryptic species being described, a comprehensive global taxonomic revision of the genus Cytospora is required. The present study includes 399 isolates from 32 countries. These isolates were subjected to DNA sequence analysis for five genomic loci (ITS, act1, rpb2, tef1-a and tub2). Based on these data, it could be confirmed that Cytospora, Leucostoma, Valsa, Valsella and Valseutypella are congeneric. Furthermore, 111 species of Cytospora could also be reassessed, 44 species and four combinations newly introduced, and new typifications proposed for a further three species. Three asexual morphological groups (including 13 asexual morphological types) and three sexual morphological groups (including eight sexual morphological types) were designated. The present study explored the species diversity of Cytospora and re-evaluated the identity of all cultures in the Westerdijk Fungal Biodiversity Institute (Utrecht, The Netherlands) that were deposited as either Cytospora or as one of its related genera. This is the most comprehensive phylogenetic analysis thus far conducted on Cytospora and the results contribute to an increased understanding of the taxonomy of these important fungi. It is also hoped that the findings will lead to improved management strategies for diseases associated Cytospora species. [ABSTRACT FROM AUTHOR]
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- 2024
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4. Diversity, divergence time, and biogeography of the genus Albatrellus (Agaricomycetes, Russulales)
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Hong-Min Zhou, Yu-Cheng Dai, Lu-Sen Bian, Hong-Gao Liu, Josef Vlasák, and Yuan Yuan
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Albatrellaceae ,ectomycorrhizae ,morphology ,multi-gene phylogeny ,Biology (General) ,QH301-705.5 ,Microbiology ,QR1-502 - Abstract
The genus Albatrellus is an important group of stipitate terrestrial fungi in the order Russulales. Some species in the genus form ectomycorrhizae, mostly with trees of Pinaceae; some are well-known edible mushrooms. However, its diversity and biogeography are unclear. Taxonomic and phylogenetic studies on Albatrellus were carried out by morphological examination, which included detailed observations of the fruiting body, spore shape and size, and other key features, together with potential hosts. These observations were then compared and analysed using multi-locus molecular phylogenetic analyses, including the internal transcribed spacer regions (ITS), the large subunit nuclear ribosomal RNA gene (nLSU), the translation elongation factor 1-α gene (tef1), the largest subunit of RNA polymerase II (rpb1), the second largest subunit of RNA polymerase II (rpb2), the small subunit mitochondrial rRNA gene (mtSSU), and the small subunit of the nuclear ribosomal RNA gene (nucSSU). The results demonstrated that the species of Albatrellus formed eight clades. Nine new species are described and illustrated, and two new combinations are proposed. A total of 38 species are accepted in Albatrellus worldwide. Of those species, 26, 7, and 8 species are distributed in Asia, Europe, and North America, respectively. The divergence time indicated that the maximum crown age of Albatrellus was approximately 70.5 million years ago, and East Asia and North America are the likely ancestral areas. Dispersal and differentiation to other continents occurred during the late Paleocene and Miocene. Three kinds of dispersal routes are proposed: East Asia and Europe, East Asia and North America, and Europe and North America.
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- 2024
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5. Diversity of Trichoderma species associated with the black rot disease of Gastrodia elata, including four new species.
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Chuwen Ye, Yanbo You, Wenjie Li, Tingting Jing, Minghe Mo, Min Qiao, and Zefen Yu
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RNA polymerase II ,ELONGATION factors (Biochemistry) ,PLANT classification ,PHYTOPATHOGENIC fungi ,PLANT diseases ,RIBOSOMAL DNA - Abstract
Introduction: Trichoderma species establish symbiotic relationships with plants through both parasitic and mutualistic mechanisms. While some Trichoderma species act as plant pathogenic fungi, others utilize various strategies to protect and enhance plant growth. Methods: Phylogenetic positions of new species of Trichoderma were determined through multi-gene analysis relying on the internal transcribed spacer (ITS) regions of the ribosomal DNA, the translation elongation factor 1-α (tef1-α) gene, and the RNA polymerase II (rpb2) gene. Additionally, pathogenicity experiments were conducted, and the aggressiveness of each isolate was evaluated based on the area of the cross-section of the infected site. Results: In this study, 13 Trichoderma species, including 9 known species and 4 new species, namely, T. delicatum, T. robustum, T. perfasciculatum, and T. subulatum were isolated from the diseased tubers of Gastrodia elata in Yunnan, China. Among the known species, T. hamatum had the highest frequency. T. delicatum belonged to the Koningii clade. T. robustum and T. perfasciculatum were assigned to the Virens clade. T. subulatum emerged as a new member of the Spirale clade. Pathogenicity experiments were conducted on the new species T. robustum, T. delicatum, and T. perfasciculatum, as well as the known species T. hamatum, T. atroviride, and T. harzianum. The infective abilities of different Trichoderma species on G. elata varied, indicating that Trichoderma was a pathogenic fungus causing black rot disease in G. elata. Discussion: This study provided the morphological characteristics of new species and discussed the morphological differences with phylogenetically proximate species, laying the foundation for research aimed at preventing and managing diseases that affect G. elata. [ABSTRACT FROM AUTHOR]
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- 2024
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6. A comprehensive molecular phylogeny of Cephalotrichum and Microascus provides novel insights into their systematics and evolutionary history.
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Wei, T. P., Wu, Y. M., Zhang, X., Zhang, H., Crous, P. W., and Jiang, Y. L.
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BIOLOGICAL classification , *MOLECULAR phylogeny , *PHYLOGENY , *SPECIES , *FOSSILS - Abstract
The genera Cephalotrichum and Microascus contain ecologically, morphologically and lifestyle diverse fungi in Microascaceae (Microascales, Sordariomycetes) with a world-wide distribution. Despite previous studies having elucidated that Cephalotrichum and Microascus are highly polyphyletic, the DNA phylogeny of many traditionally morphology-defined species is still poorly resolved, and a comprehensive taxonomic overview of the two genera is lacking. To resolve this issue, we integrate broad taxon sampling strategies and the most comprehensive multi-gene (ITS, LSU, tef1 and tub2) datasets to date, with fossil calibrations to address the phylogenetic relationships and divergence times among major lineages of Microascaceae. Two previously recognised main clades, Cephalotrichum (24 species) and Microascus (49 species), were re-affirmed based on our phylogenetic analyses, as well as the phylogenetic position of 15 genera within Microascaceae. In this study, we provide an up-to-date overview on the taxonomy and phylogeny of species belonging to Cephalotrichum and Microascus, as well as detailed descriptions and illustrations of 21 species of which eight are newly described. Furthermore, the divergence time estimates indicate that the crown age of Microascaceae was around 210.37 Mya (95 % HPD: 177.18–246.96 Mya) in the Late Triassic, and that Cephalotrichum and Microascus began to diversify approximately 27.07 Mya (95 % HPD: 20.47–34.37 Mya) and 70.46 Mya (95 % HPD: 56.96–86.24 Mya), respectively. Our results also demonstrate that multigene sequence data coupled with broad taxon sampling can help elucidate previously unresolved clade relationships. [ABSTRACT FROM AUTHOR]
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- 2024
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7. An overview of Melanommataceae (Pleosporales, Dothideomycetes): Current insight into the host associations and geographical distribution with some interesting novel additions from plant litter.
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Tennakoon, Danushka S., Thambugala, Kasun M., de Silva, Nimali I., Song, Hai-Yan, Suwannarach, Nakarin, Chen, Fu-Sheng, and Hu, Dian-Ming
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PLANT litter , *CINNAMON tree , *EUROPEAN beech , *PLANT growing media , *BAYESIAN analysis , *ALNUS glutinosa , *CITRUS - Abstract
Melanommataceous species exhibit high diversity with a cosmopolitan distribution worldwide and show a prominent saprobic lifestyle. In this study, we explored five saprobic species collected from plant litter substrates from terrestrial habitats in China and Thailand. A combination of morphological characteristics and multi-locus phylogenetic analyses was used to determine their taxonomic classifications. Maximum Likelihood and Bayesian Inference analyses of combined LSU , SSU , ITS and tef1-α sequence data were used to clarify the phylogenetic affinities of the species. Byssosphaeria poaceicola and Herpotrichia zingiberacearum are introduced as new species, while three new host records, Bertiella fici, By. siamensis and Melanomma populicola are also reported from litter of Cinnamomum verum, Citrus trifoliata and Fagus sylvatica, respectively. Yet, despite the rising interest in the melanommataceous species, there is a considerable gap in knowledge on their host associations and geographical distributions. Consequently, we compiled the host-species associations and geographical distributions of all the so far known melanommataceous species. [ABSTRACT FROM AUTHOR]
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- 2024
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8. Species diversity in Pseudocercospora.
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Groenewald, J. Z., Chen, Y. Y., Zhang, Y., Roux, J., Shin, H.-D., Shivas, R. G., Summerell, B. A., Braun, U., Alfenas, A. C., Ujat, A. H., Nakashima, C., and Crous, P. W.
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PSEUDOCERCOSPORELLA , *SPECIES diversity , *HOST plants , *TAXONOMY , *PHYTOPATHOGENIC fungi - Abstract
Species of Pseudocercospora are commonly associated with leaf and fruit spots on diverse plant hosts in sub-tropical and tropical regions. Pseudocercospora spp. have mycosphaerella-like sexual morphs, but represent a distinct genus in Mycosphaerellaceae (Mycosphaerellales, Dothideomycetes). The present study adds a further 29 novel species of Pseudocercospora from 413 host species representing 297 host genera occurring in 60 countries and designates four epitypes and one lectotype for established names. This study recognises 329 species names, with an additional 69 phylogenetic lineages remaining unnamed due to difficulty in being able to unambiguously apply existing names to those lineages. To help elucidate the taxonomy of these species, a phylogenetic tree was generated from multi-locus DNA sequence data of the internal transcribed spacers and intervening 5.8S nuclear nrRNA gene (ITS), partial actin (actA), and partial translation elongation factor 1-alpha (tef1), as well as the partial DNA-directed RNA polymerase II second largest subunit (rpb2) gene sequences. Novel species described in this study include those from various countries as follows: Australia, Ps. acaciicola from leaf spots on Acacia sp., Ps. anopter from leaf spots on Anopterus glandulosus, Ps. asplenii from leaf spots on Asplenium dimorphum, Ps. australiensis from leaf spots on Eucalyptus gunnii, Ps. badjensis from leaf spots on Eucalyptus badjensis, Ps. erythrophloeicola from leaf spots on Erythrophleum chlorostachys, Ps. grevilleae from leaf spots on Grevillea sp., Ps. lophostemonigena from leaf spots on Lophostemon confertus, Ps. lophostemonis from leaf spots on Lophostemon lactifluus, Ps. paramacadamiae from leaf spots on Macadamia integrifolia, Ps. persooniae from leaf spots on Persoonia sp., Ps. pultenaeae from leaf spots on Pultenaea daphnoides, Ps. tristaniopsidis from leaf spots on Tristaniopsis collina, Ps. victoriae from leaf spots on Eucalyptus globoidea. Brazil, Ps. musigena from leaf spots on Musa sp. China, Ps. lonicerae-japonicae from leaf spots on Lonicera japonica, Ps. rubigena leaf spots on Rubus sp. France (Réunion), Ps. wingfieldii from leaf spots on Acacia heterophylla. Malaysia, Ps. musarum from leaf spots on Musa sp. Netherlands, Ps. rhododendri from leaf spots on Rhododendron sp. South Africa, Ps. balanitis from leaf spots on Balanites sp., Ps. dovyalidicola from leaf spots on Dovyalis zeyheri, Ps. encephalarticola from leaf spots on Encephalartos sp. South Korea, Ps. grewiana from leaf spots on Grewia biloba, Ps. parakaki from leaf spots on Diospyros kaki, Ps. pseudocydoniae from leaf spots on Chaenomeles lagenaria, Ps. paracydoniae from leaf spots on Chaenomeles speciosa. Thailand, Ps. acerigena from leaf spots on Acer sp., Ps. tectonigena from leaf spots on Tectona grandis. Epitypes are designated for Cercospora bonjeaneae-rectae, Cercospora halleriae, Ps. eucleae, and an epitype as well as a lectotype for Ps. macadamiae. Results obtained in the present study contribute to a better understanding of the host specificity and distribution in Pseudocercospora spp., many of which represent important pathogens of food or fibre crops, or organisms of quarantine concern. [ABSTRACT FROM AUTHOR]
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- 2024
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9. New and Interesting Fungi. 7.
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Visagie, C. M., Yilmaz, N., Allison, J. D., Barreto, R. W., Boekhout, T., Boers, J., Delgado, M. A., Dewing, C., Fitza, K. N. E., Furtado, E. C. A., Gaya, E., Hill, R., Hobden, A., Hu, D. M., Hülsewig, T., Khonsanit, A., Luangsa-ard, J. J., Mthembu, A., Pereira, C. M., and Price, J.-L.
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EPITOPES , *ASCOMYCETES , *TAXONOMY , *GENETIC barcoding , *FUNGAL phylogeny - Abstract
Two new genera, 17 new species, two epitypes, and six interesting new host and / or geographical records are introduced in this study. New genera include: Cadophorella (based on Cadophorella faginea) and Neosatchmopsis (based on Neosatchmopsis ogrovei). New species include: Alternaria halotolerans (from hypersaline sea water, Qatar), Amylostereum stillwellii (from mycangia of Sirex areolatus, USA), Angiopsora anthurii (on leaves of Anthurium andraeanum, Brazil), Anthracocystis zeae-maydis (from pre-stored Zea mays, South Africa), Bisifusarium solicola (from soil, South Africa), Cadophorella faginea (from dead capsule of Fagus sylvatica, Germany), Devriesia mallochii (from house dust, Canada), Fusarium kirstenboschense (from soil, South Africa), Macroconia podocarpi (on ascomata of ascomycete on twigs of Podocarpus falcatus, South Africa), Neosatchmopsis ogrovei (on Eucalyptus leaf litter, Spain), Ophiocordyceps kuchinaraiensis (on Coleoptera larva, Thailand), Penicillium cederbergense (from soil, South Africa), Penicillium pascuigraminis (from pasture mulch, South Africa), Penicillium viridipigmentum (from soil, South Africa), Pleurotheciella acericola (on stem, bark of living tree of Acer sp., Germany), Protocreopsis physciae (on Physcia caesia, Netherlands), and Talaromyces podocarpi (from soil, South Africa). [ABSTRACT FROM AUTHOR]
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- 2024
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10. Tetraploa wurfbainiae sp. nov. (Tetraplosphaeriaceae, Pleosporales) isolated from Wurfbainia villosa in Guangdong, China.
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Liao, Chun-Fang, Yang, Yun-Hui, Dong, Wei, Tangtrakulwanich, Khanobporn, Zhang, Yun-Xia, Khan, Sehroon, Nadir, Sadia, Chethana, Kandawatte W. T., and Doilom, Mingkwan
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ELONGATION factors (Biochemistry) , *MEDICINAL plants , *PLANT species , *PHYLOGENY , *ZINGIBERACEAE - Abstract
During a survey for microfungi associated with traditional medicinal plants in Guangdong Province, China, an interesting species in the Tetraplosphaeriaceae was isolated from the dead stem of Wurfbainia villosa (Zingiberaceae). The new collection is characterised by brown to dark brown, cylindrical to ovate, four-columned conidia, mostly with four straight or slightly flexuous, smooth, and long apical appendages. The phylogenetic analysis of the combined dataset of internal transcribed spacer (ITS), large subunit nuclear rDNA (LSU), the partial translation elongation factor 1-α (tef1-α), and β-tubulin (tub2) further indicated that the new collection forms a distinct branch in Tetraploa and clusters as a sister taxon with T. dwibahubeeja. Thus, we introduce a new species, Tetraploa wurfbainiae, based on distinct morphology and multi-locus phylogeny, accompanied by a description, illustration, and morphological comparison with related taxa. This is the first report of Tetraploa species on the medicinal plant W. villosa. This study enhances our understanding of the fungal species associated with the medicinal plant W. villosa. [ABSTRACT FROM AUTHOR]
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- 2024
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11. Sexual morph of Allophoma tropica and Didymella coffeae-arabicae (Didymellaceae, Pleosporales, Dothidiomycetes), including novel host records from leaf litter in Thailand.
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Samaradiwakara, Nethmini P., Gomes de Farias, Antonio Roberto, Tennakoon, Danushka S., Bhunjun, Chitrabhanu S., Hyde, Kevin D., and Lumyong, Saisamorn
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FOREST litter , *FUNGI classification , *MOLECULAR phylogeny , *RIBOSOMAL DNA , *FOREST reserves - Abstract
Studying the taxonomy, diversity and host preference of leaf litter inhabiting microfungi contributes towards elucidating hidden taxa, their host affinities and recovering novel life modes dwelling inside forest ecosystems. Leaf litter-inhabiting microfungi also play a crucial role in forest ecosystems through decomposition and nutrient recycling. This study resulted in the introduction of saprobic Didymellaceae microfungi from Doi Tung Forest Reserve, Chiang Rai, northern Thailand. Fungal isolates were characterised based on morphology and molecular phylogeny of the nuclear ribosomal DNA (ITS, LSU) and protein-coding genes (tub2, rpb2). Allophoma tropica and Remotididymella ageratinae are recorded from dead leaves of Nayariophyton zizyphifolium (Malvaceae), and Didymella coffeae-arabicae from Dalbergia cultrata and Afzelia xylocarpa (Fabaceae). This study also reports the sexual morph of Allophoma tropica and Didymella coffeae-arabicae and provides molecular evidence for the first reports of sexual morphs from Thailand. [ABSTRACT FROM AUTHOR]
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- 2024
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12. Intraspecific variability of rice root knot nematodes across diverse agroecosystems for sustainable management
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Mondal, Sandip, Purohit, Arnab, Hazra, Anjan, Das, Sampa, Chakrabarti, Manohar, Khan, Matiyar Rahaman, Lopez-Nicora, Horacio, Chakraborti, Dipankar, and Mukherjee, Abhishek
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- 2024
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13. Morphological and molecular analyses reveal two new species of Grifola (Polyporales) from Yunnan, China.
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Song-Ming Tang, De-Chao Chen, Shuai Wang, Xiao-Qu Wu, Cheng-Ce Ao, Er-Xian Li, Hong-Mei Luo, and Shu-Hong Li
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TUBULINS , *EDIBLE mushrooms , *GENETIC distance , *SPECIES , *CHLAMYDOSPORES , *ELLIPSOIDS , *BASIDIOSPORES - Abstract
Species of Grifola are famous edible mushrooms and are deeply loved by consumers around the world. Most species of this genus have been described and recorded in Oceania, Europe and South America, with only Grifola frondosa being recorded in Asia. In this study, two novel species of Grifola from southwestern China (Asia) are introduced. Macro and micromorphological characters are described. Grifola edulis sp. nov. present medium-size basidiomata with gray to gray-brown lobes upper surface, mostly tibiiform or narrowly clavate, rarely narrowly lageniform or ellipsoid chlamydospores, cuticle hyphae terminal segments slightly enlarged. Grifola sinensis sp. nov. has white to grayish white lobes upper surface, mostly ellipsoid, rarely narrowly utriform chlamydospores, and broadly ellipsoid to ellipsoid basidiospores (4.6-7.9 × 3.0-5.9 µm). The two new species are supported by phylogenetic analyses of combined nuclear rDNA internal transcribed spacer ITS1-5.8S-ITS2 rDNA (ITS) and ß-tubulin (TUBB). Moreover, the genetic distance between TUBB sequences of those specimen from GenBank was 1.76-1.9%. Thus, the conspecificity relationship of our specimens remains uncertain, and further specimens are required to conclusively confirm its identity. [ABSTRACT FROM AUTHOR]
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- 2024
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14. Ecological Speciation without Morphological Differentiation? A New Cryptic Species of Diodontus Curtis (Hymenoptera, Pemphredonidae) from the Centre of Europe †.
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Budrys, Eduardas, Orlovskytė, Svetlana, and Budrienė, Anna
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OPERONS , *RIBOSOMAL DNA , *HOMEOBOX genes , *GENETIC speciation , *HYMENOPTERA , *ECOSYSTEMS , *SPECIES , *DISCRIMINANT analysis , *GENETIC markers - Abstract
Simple Summary: The application of molecular methods in the studies of biological diversity revealed that there are many more species than we can recognise by their appearance. Species pairs or groups, which are difficult to recognise and are known as cryptic species, may differ in their ecological traits, place in trophic networks, and their functional role in ecosystems. It is important to separate cryptic species, particularly if we apply species composition or other diversity metrics for an assessment or monitoring of the ecosystem state or human pressures and impacts. In our study, we revealed a new cryptic species of aphid-hunting wasp that is virtually indistinguishable from a well-known one by morphology. These two species can be easily segregated using molecular characters, and presumably they differ also by nesting habitat. Upon exploring the mitotype diversity of the aphid-hunting wasp, Diodontus tristis, we revealed specimens with highly divergent mitotypes from two localities in Lithuania and nesting in clayey substrate, while the specimens with typical mitotypes were found nesting in sandy sites. The comparison of inter- and intra-specific distances and application of delimitation algorithms supported the species status of the clay-nesting populations. Using a set of DNA markers that included complete or partial sequences of six mitochondrial genes, three markers of ribosomal operon, two homeobox genes, and four other nuclear genes, we clarified the phylogenetic relationships of the new cryptic species. The endosymbiotic bacteria infestation was checked, considering the option that the divergent populations may represent clades isolated by Wolbachia infection; however, it did not demonstrate any specificity. We found only subtle morphological differences in the new clay-nesting species, D. argillicola sp. nov.; the discriminant analysis of morphometric measurements did not reliably segregate it as well. Thus, we provide the molecular characters of the cryptic species, which allow confident identification, its phylogenetic position within the genus, and an updated identification key for the D. tristis species group. [ABSTRACT FROM AUTHOR]
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- 2024
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15. Six New Species of Agaricus (Agaricaceae, Agaricales) from Northeast China.
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Wang, Shi-En and Bau, Tolgor
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AGARICALES , *SPECIES , *FIELD research , *MACROFUNGI - Abstract
Agaricus belongs to Agaricaceae and is one of the most well-known macrofungi, with many edible species. More than 300 Agaricus specimens were collected during a three-year macrofungal resource field investigation in Northeast China. Based on morphological observations and multi-gene (ITS + nrLSU + tef1-a) phylogenetic analyses, six new Agaricus species, i.e., Agaricus aurantipileatus, A. daqinggouensis, A. floccularis, A. griseopileatus, A. sinoagrocyboides, and A. velutinosus, were discovered. These new species belong to four sections within different subgenera: A. (subg. Agaricus) sect. Agaricus, A. (subg. Flavoagaricus) sect. Arvenses, A. (subg. Minores) sect. Minores, and A. (subg. Pseudochitonia) sect. Xanthodermatei. Morphological descriptions, line illustrations, and basidiomata photographs of these new species are provided, and their differences from similar species are discussed. [ABSTRACT FROM AUTHOR]
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- 2024
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16. Geastrum sanglinense, a new species from the Manghe Rhesus Monkey National Nature Reserve, China.
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Yanqun Wu, Shuqin Liu, Tengyun Wang, Junlong Meng, Mingchang Chang, and Shurong Wang
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RHESUS monkeys , *RIBOSOMAL DNA , *NATIONAL parks & reserves , *NATURE reserves , *ADENOSINE triphosphatase , *SPECIES - Abstract
A novel species of earthstar from China, Geastrum sanglinense is described. Phylogenetic analyses based on sequences of the nuclear ribosomal DNA internal transcribed spacer (ITS), large subunit nuclear ribosomal RNA (nrLSU), and subunit 6 of ATP synthase (atp6) regions showed that the species belongs to subsect. Epigaea in sect. Myceliostroma. The sequences of the new taxon formed a sister group to G. yanshanense and G. rubellum. This species was mainly characterized by scattered or clustered basidiomata (1.9-2.2 cm in width × 2.3-2.5 cm in height), small to medium-sized saccate exoperidium (1.9-4.3 cm diam. when expanded), smooth endoperidial bodies (1.2-2.7 cm diam.), and globose to subglobose basidiospores (3.7-4.1 µm diam.), surface with short columnar warts. The species can also be distinguished by ITS, nrLSU, and atp6 sequences. The new species was described in detail and can provide a reference for the investigation of macrofungi resources in Shanxi Province, China. [ABSTRACT FROM AUTHOR]
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- 2024
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17. Fusarium: more than a node or a foot-shaped basal cell.
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Crous, PW, Lombard, L, Sandoval-Denis, M, Seifert, KA, Schroers, H-J, Chaverri, P, Gené, J, Guarro, J, Hirooka, Y, Bensch, K, Kema, GHJ, Lamprecht, SC, Cai, L, Rossman, AY, Stadler, M, Summerbell, RC, Taylor, JW, Ploch, S, Visagie, CM, Yilmaz, N, Frisvad, JC, Abdel-Azeem, AM, Abdollahzadeh, J, Abdolrasouli, A, Akulov, A, Alberts, JF, Araújo, JPM, Ariyawansa, HA, Bakhshi, M, Bendiksby, M, Ben Hadj Amor, A, Bezerra, JDP, Boekhout, T, Câmara, MPS, Carbia, M, Cardinali, G, Castañeda-Ruiz, RF, Celis, A, Chaturvedi, V, Collemare, J, Croll, D, Damm, U, Decock, CA, de Vries, RP, Ezekiel, CN, Fan, XL, Fernández, NB, Gaya, E, González, CD, Gramaje, D, Groenewald, JZ, Grube, M, Guevara-Suarez, M, Gupta, VK, Guarnaccia, V, Haddaji, A, Hagen, F, Haelewaters, D, Hansen, K, Hashimoto, A, Hernández-Restrepo, M, Houbraken, J, Hubka, V, Hyde, KD, Iturriaga, T, Jeewon, R, Johnston, PR, Jurjević, Ž, Karalti, I, Korsten, L, Kuramae, EE, Kušan, I, Labuda, R, Lawrence, DP, Lee, HB, Lechat, C, Li, HY, Litovka, YA, Maharachchikumbura, SSN, Marin-Felix, Y, Matio Kemkuignou, B, Matočec, N, McTaggart, AR, Mlčoch, P, Mugnai, L, Nakashima, C, Nilsson, RH, Noumeur, SR, Pavlov, IN, Peralta, MP, Phillips, AJL, Pitt, JI, Polizzi, G, Quaedvlieg, W, Rajeshkumar, KC, Restrepo, S, Rhaiem, A, Robert, J, Robert, V, and Rodrigues, AM
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Apiognomonia platani (Lév.) L. Lombard ,Atractium ciliatum Link ,Atractium pallidum Bonord. ,Calloria tremelloides (Grev.) L. Lombard ,Cephalosporium sacchari E.J. Butler ,Cosmosporella cavisperma (Corda) Sand.-Den. ,L. Lombard & Crous ,Cylindrodendrum orthosporum (Sacc. & P. Syd.) L. Lombard ,Dialonectria volutella (Ellis & Everh.) L. Lombard & Sand.-Den. ,Fusarium aeruginosum Delacr. ,Fusarium agaricorum Sarrazin ,Fusarium albidoviolaceum Dasz. ,Fusarium aleyrodis Petch ,Fusarium amentorum Lacroix ,Fusarium annuum Leonian ,Fusarium arcuatum Berk. & M.A. Curtis ,Fusarium aridum O.A. Pratt ,Fusarium armeniacum (G.A. Forbes et al.) L.W. Burgess & Summerell ,Fusarium arthrosporioides Sherb. ,Fusarium asparagi Delacr. ,Fusarium batatas Wollenw. ,Fusarium biforme Sherb. ,Fusarium buharicum Jacz. ex Babajan & Teterevn.-Babajan ,Fusarium cactacearum Pasin. & Buzz.-Trav. ,Fusarium cacti-maxonii Pasin. & Buzz.-Trav. ,Fusarium caudatum Wollenw. ,Fusarium cavispermum Corda ,Fusarium cepae Hanzawa ,Fusarium cesatii Rabenh. ,Fusarium citriforme Jamal. ,Fusarium citrinum Wollenw. ,Fusarium citrulli Taubenh. ,Fusarium clavatum Sherb. ,Fusarium coccinellum Kalchbr. ,Fusarium cromyophthoron Sideris ,Fusarium cucurbitae Taubenh. ,Fusarium cuneiforme Sherb. ,Fusarium delacroixii Sacc. ,Fusarium dimerum var. nectrioides Wollenw. ,Fusarium echinatum Sand.-Den. & G.J. Marais ,Fusarium epicoccum McAlpine ,Fusarium eucheliae Sartory ,R. Sartory & J. Mey. ,Fusarium fissum Peyl ,Fusarium flocciferum Corda ,Fusarium gemmiperda Aderh. ,Fusarium genevense Dasz. ,Fusarium graminearum Schwabe ,Fusarium graminum Corda ,Fusarium heterosporioides Fautrey ,Fusarium heterosporum Nees & T. Nees ,Fusarium idahoanum O.A. Pratt ,Fusarium juruanum Henn. ,Fusarium lanceolatum O.A. Pratt ,Fusarium lateritium Nees ,Fusarium loncheceras Sideris ,Fusarium longipes Wollenw. & Reinking ,Fusarium lyarnte J.L. Walsh ,Sangal. ,L.W. Burgess ,E.C.Y. Liew & Summerell ,Fusarium malvacearum Taubenh. ,Fusarium martii f. phaseoli Burkh. ,Fusarium muentzii Delacr. ,Fusarium nigrum O.A. Pratt ,Fusarium oxysporum var. asclerotium Sherb. ,Fusarium palczewskii Jacz. ,Fusarium palustre W.H. Elmer & Marra ,Fusarium polymorphum Matr. ,Fusarium poolense Taubenh. ,Fusarium prieskaense G.J. Marais & Sand.-Den. ,Fusarium prunorum McAlpine ,Fusarium pusillum Wollenw. ,Fusarium putrefaciens Osterw. ,Fusarium redolens Wollenw. ,Fusarium reticulatum Mont. ,Fusarium rhizochromatistes Sideris ,Fusarium rhizophilum Corda ,Fusarium rhodellum McAlpine ,Fusarium roesleri Thüm. ,Fusarium rostratum Appel & Wollenw. ,Fusarium rubiginosum Appel & Wollenw. ,Fusarium rubrum Parav. ,Fusarium samoense Gehrm. ,Fusarium scirpi Lambotte & Fautrey ,Fusarium secalis Jacz. ,Fusarium spinaciae Hungerf. ,Fusarium sporotrichioides Sherb. ,Fusarium stercoris Fuckel ,Fusarium stilboides Wollenw. ,Fusarium stillatum De Not. ex Sacc. ,Fusarium sublunatum Reinking ,Fusarium succisae Schröt. ex Sacc. ,Fusarium tabacivorum Delacr. ,Fusarium trichothecioides Wollenw. ,Fusarium tritici Liebman ,Fusarium tuberivorum Wilcox & G.K. Link ,Fusarium tumidum var. humi Reinking ,Fusarium ustilaginis Kellerm. & Swingle ,Fusarium viticola Thüm. ,Fusarium werrikimbe J.L. Walsh ,L.W. Burgess ,E.C.Y. Liew & B.A. Summerell ,Fusarium willkommii Lindau ,Fusarium xylarioides Steyaert ,Fusarium zygopetali Delacr. ,Fusicolla meniscoidea L. Lombard & Sand.-Den. ,Fusicolla quarantenae J.D.P. Bezerra ,Sand.-Den. ,Crous & Souza-Motta ,Fusicolla sporellula Sand.-Den. & L. Lombard ,Fusisporium andropogonis Cooke ex Thüm. ,Fusisporium anthophilum A. Braun ,Fusisporium arundinis Corda ,Fusisporium avenaceum Fr. ,Fusisporium clypeaster Corda ,Fusisporium culmorum Wm.G. Sm. ,Fusisporium didymum Harting ,Fusisporium elasticae Thüm. ,Fusisporium episphaericum Cooke & Ellis ,Fusisporium flavidum Bonord. ,Fusisporium hordei Wm.G. Sm. ,Fusisporium incarnatum Roberge ex Desm. ,Fusisporium lolii Wm.G. Sm. ,Fusisporium pandani Corda ,Gibberella phyllostachydicola W. Yamam. ,Hymenella aurea (Corda) L. Lombard ,Hymenella spermogoniopsis (Jul. Müll.) L. Lombard & Sand.-Den. ,Luteonectria Sand.-Den. ,L. Lombard ,Schroers & Rossman ,Luteonectria albida (Rossman) Sand.-Den. & L. Lombard ,Luteonectria nematophila (Nirenberg & Hagedorn) Sand.-Den. & L. Lombard ,Macroconia bulbipes Crous & Sand.-Den. ,Macroconia phlogioides Sand.-Den. & Crous ,Menispora penicillata Harz ,Multi-gene phylogeny ,Mycotoxins ,Nectriaceae ,Neocosmospora ,Neocosmospora epipeda Quaedvl. & Sand.-Den. ,Neocosmospora floridana (T. Aoki et al.) L. Lombard & Sand.-Den. ,Neocosmospora merkxiana Quaedvl. & Sand.-Den. ,Neocosmospora neerlandica Crous & Sand.-Den. ,Neocosmospora nelsonii Crous & Sand.-Den. ,Neocosmospora obliquiseptata (T. Aoki et al.) L. Lombard & Sand.-Den. ,Neocosmospora pseudopisi Sand.-Den. & L. Lombard ,Neocosmospora rekana (Lynn & Marinc.) L. Lombard & Sand.-Den. ,Neocosmospora tuaranensis (T. Aoki et al.) L. Lombard & Sand.-Den. ,Nothofusarium Crous ,Sand.-Den. & L. Lombard ,Nothofusarium devonianum L. Lombard ,Crous & Sand.-Den. ,Novel taxa ,Pathogen ,Scolecofusarium L. Lombard ,Sand.-Den. & Crous ,Scolecofusarium ciliatum (Link) L. Lombard ,Sand.-Den. & Crous ,Selenosporium equiseti Corda ,Selenosporium hippocastani Corda ,Selenosporium sarcochroum Desm ,Selenosporium urticearum Corda. ,Setofusarium (Nirenberg & Samuels) Crous & Sand.-Den. ,Setofusarium setosum (Samuels & Nirenberg) Sand.-Den. & Crous. ,Sphaeria sanguinea var. cicatricum Berk. ,Sporotrichum poae Peck. ,Stylonectria corniculata Gräfenhan ,Crous & Sand.-Den. ,Stylonectria hetmanica Akulov ,Crous & Sand.-Den. ,Taxonomy ,Mycology & Parasitology ,Microbiology - Abstract
Recent publications have argued that there are potentially serious consequences for researchers in recognising distinct genera in the terminal fusarioid clade of the family Nectriaceae. Thus, an alternate hypothesis, namely a very broad concept of the genus Fusarium was proposed. In doing so, however, a significant body of data that supports distinct genera in Nectriaceae based on morphology, biology, and phylogeny is disregarded. A DNA phylogeny based on 19 orthologous protein-coding genes was presented to support a very broad concept of Fusarium at the F1 node in Nectriaceae. Here, we demonstrate that re-analyses of this dataset show that all 19 genes support the F3 node that represents Fusarium sensu stricto as defined by F. sambucinum (sexual morph synonym Gibberella pulicaris). The backbone of the phylogeny is resolved by the concatenated alignment, but only six of the 19 genes fully support the F1 node, representing the broad circumscription of Fusarium. Furthermore, a re-analysis of the concatenated dataset revealed alternate topologies in different phylogenetic algorithms, highlighting the deep divergence and unresolved placement of various Nectriaceae lineages proposed as members of Fusarium. Species of Fusarium s. str. are characterised by Gibberella sexual morphs, asexual morphs with thin- or thick-walled macroconidia that have variously shaped apical and basal cells, and trichothecene mycotoxin production, which separates them from other fusarioid genera. Here we show that the Wollenweber concept of Fusarium presently accounts for 20 segregate genera with clear-cut synapomorphic traits, and that fusarioid macroconidia represent a character that has been gained or lost multiple times throughout Nectriaceae. Thus, the very broad circumscription of Fusarium is blurry and without apparent synapomorphies, and does not include all genera with fusarium-like macroconidia, which are spread throughout Nectriaceae (e.g., Cosmosporella, Macroconia, Microcera). In this study four new genera are introduced, along with 18 new species and 16 new combinations. These names convey information about relationships, morphology, and ecological preference that would otherwise be lost in a broader definition of Fusarium. To assist users to correctly identify fusarioid genera and species, we introduce a new online identification database, Fusarioid-ID, accessible at www.fusarium.org. The database comprises partial sequences from multiple genes commonly used to identify fusarioid taxa (act1, CaM, his3, rpb1, rpb2, tef1, tub2, ITS, and LSU). In this paper, we also present a nomenclator of names that have been introduced in Fusarium up to January 2021 as well as their current status, types, and diagnostic DNA barcode data. In this study, researchers from 46 countries, representing taxonomists, plant pathologists, medical mycologists, quarantine officials, regulatory agencies, and students, strongly support the application and use of a more precisely delimited Fusarium (= Gibberella) concept to accommodate taxa from the robust monophyletic node F3 on the basis of a well-defined and unique combination of morphological and biochemical features. This F3 node includes, among others, species of the F. fujikuroi, F. incarnatum-equiseti, F. oxysporum, and F. sambucinum species complexes, but not species of Bisifusarium [F. dimerum species complex (SC)], Cyanonectria (F. buxicola SC), Geejayessia (F. staphyleae SC), Neocosmospora (F. solani SC) or Rectifusarium (F. ventricosum SC). The present study represents the first step to generating a new online monograph of Fusarium and allied fusarioid genera (www.fusarium.org).
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- 2021
18. First report of fruit rot caused by Phytophthora parsiana Mostowf., D.E.L. Cooke and Banihash, on arecanut in Western-Ghats of Southern India.
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Patil, Balanagouda, Pandian, R. Thava Prakasa, Thube, Shivaji H., Hegde, Vinayaka, Sridhara, Shankarappa, Rajesh, M. K., Hanumanthappa, Prathibha Veerappa, Palliath, Gangaraj Karyath, and Pruthviraj
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Arecanut is an important commercial plantation crop in India, and many farm families depend solely on the arecanut industry. In July 2018, immature nuts were shed heavily due to fruit rot disease in the Western-Ghats region. Though the symptoms were suggestive of common fruit rot disease, they appeared to be unusual. The associated pathogen was isolated from the infected tissue using the standard isolation technique, and an oomycete fungus was consistently isolated from infected nuts. Based on the colony and spore morphology, the pathogen was identified as Phytophthora sp. and by multi-gene sequencing (ITS, β-tub, TEF-1α, and Cox-II) confirmed it as Phytophthora parsiana. The pathogenicity of the isolate (P25) was established by inoculating healthy arecanut fruits with the pin-prick method. To our knowledge, this is the pioneering work that represents the first report of Phytophthora parsiana infecting arecanut in Western-Ghats of Southern India. [ABSTRACT FROM AUTHOR]
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- 2023
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19. New and Interesting Fungi. 3
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Crous, PW, Wingfield, MJ, Schumacher, RK, Akulov, A, Bulgakov, TS, Carnegie, AJ, Jurjević, Ž, Decock, C, Denman, S, Lombard, L, Lawrence, DP, Stack, AJ, Gordon, TR, Bostock, RM, Burgess, T, Summerell, BA, Taylor, PWJ, Edwards, J, Hou, LW, Cai, L, Rossman, AY, Wöhner, T, Allen, WC, Castlebury, LA, Visagie, CM, and Groenewald, JZ
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ITS barcodes ,biodiversity ,multi-gene phylogeny ,new taxa ,systematics ,typification - Abstract
Seven new genera, 26 new species, 10 new combinations, two epitypes, one new name, and 20 interesting new host and / or geographical records are introduced in this study. New genera are: Italiofungus (based on Italiofungus phillyreae) on leaves of Phillyrea latifolia (Italy); Neolamproconium (based on Neolamproconium silvestre) on branch of Tilia sp. (Ukraine); Neosorocybe (based on Neosorocybe pini) on trunk of Pinus sylvestris (Ukraine); Nothoseptoria (based on Nothoseptoria caraganae) on leaves of Caragana arborescens (Russia); Pruniphilomyces (based on Pruniphilomyces circumscissus) on Prunus cerasus (Russia); Vesiculozygosporium (based on Vesiculozygosporium echinosporum) on leaves of Muntingia calabura (Malaysia); Longiseptatispora (based on Longiseptatispora curvata) on leaves of Lonicera tatarica (Russia). New species are: Barrmaelia serenoae on leaf of Serenoa repens (USA); Chaetopsina gautengina on leaves of unidentified grass (South Africa); Chloridium pini on fallen trunk of Pinus sylvestris (Ukraine); Cadophora fallopiae on stems of Reynoutria sachalinensis (Poland); Coleophoma eucalyptigena on leaf litter of Eucalyptus sp. (Spain); Cylindrium corymbiae on leaves of Corymbia maculata (Australia); Diaporthe tarchonanthi on leaves of Tarchonanthus littoralis (South Africa); Elsinoe eucalyptorum on leaves of Eucalyptus propinqua (Australia); Exophiala quercina on dead wood of Quercus sp., (Germany); Fusarium californicum on cambium of budwood of Prunus dulcis (USA); Hypomyces gamsii on wood of Alnus glutinosa (Ukraine); Kalmusia araucariae on leaves of Araucaria bidwillii (USA); Lectera sambuci on leaves of Sambucus nigra (Russia); Melanomma populicola on fallen twig of Populus canadensis (Netherlands), Neocladosporium syringae on branches of Syringa vulgarishorus (Ukraine); Paraconiothyrium iridis on leaves of Iris pseudacorus (Ukraine); Pararoussoella quercina on branch of Quercus robur (Ukraine); Phialemonium pulveris from bore dust of deathwatch beetle (France); Polyscytalum pinicola on needles of Pinus tecunumanii (Malaysia); Acervuloseptoria fraxini on Fraxinus pennsylvanica (Russia); Roussoella arundinacea on culms of Arundo donax (Spain); Sphaerulina neoaceris on leaves of Acer negundo (Russia); Sphaerulina salicicola on leaves of Salix fragilis (Russia); Trichomerium syzygii on leaves of Syzygium cordatum (South Africa); Uzbekistanica vitis-viniferae on dead stem of Vitis vinifera (Ukraine); Vermiculariopsiella eucalyptigena on leaves of Eucalyptus sp. (Australia).
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- 2020
20. Six new species of zombie-ant fungi from Yunnan in China
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Dexiang Tang, Ou Huang, Weiqiu Zou, Yuanbing Wang, Yao Wang, Quanying Dong, Tao Sun, Gang Yang, and Hong Yu
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6 new taxa ,Camponotus ,Living cultures ,Morphology ,Multi-gene phylogeny ,Ophiocordyceps ,Botany ,QK1-989 - Abstract
Abstract Some Ophiocordyceps species infecting ants are able to manipulate the host behavior. The hosts are manipulated in order to move to location that are advantageous for fungal spore transmission. Ophiocordyceps species that are able to manipulate the ant's behavior are called "zombie-ant fungi". They are widespread within tropical forests worldwide, with relatively few reports from subtropical monsoon evergreen broad-leaf forest. Zombie-ant fungi have been described and reported in different countries worldwide. However, there were a few reports from China. This study proposed six new species of zombie-ant fungi from China based on multi-gene (SSU, LSU, TEF, RPB1 and RPB2) phylogenetic analyses and morphological characteristics. Six novel species of Ophiocordyceps from China were identified as the Ophiocordyceps unilateralis core clade, forming a separate lineage with other species. Six novel species of Ophiocordyceps with hirsutella-like asexual morphs exclusively infecting ants were presented herein, namely, Ophiocordyceps acroasca, Ophiocordyceps bifertilis, Ophiocordyceps subtiliphialida, Ophiocordyceps basiasca, Ophiocordyceps nuozhaduensis and Ophiocordyceps contiispora. Descriptions and illustrations for six taxon were provided. Five of these species were collected from the subtropical monsoon evergreen broad-leaf forest, and one was collected from the rainforest and subtropical monsoon evergreen broad-leaf forest. This work proposes that the same host of Camponotus can be infected by multiple ant pathogenic fungi, while multiple ants of Polyrhachis can be infected by the same pathogenic fungi at the same time. This study contributes towards a better understanding of the evolutionary relationship between hosts and fungi, and provides novel insights into the morphology, distribution, parasitism, and ecology of Ophiocordyceps unilateralis sensu lato. We have provided a method for obtaining living cultures of Ophiocordyceps unilateralis complex species and their asexual morphs based on the living cultures, which is of significant value for further studies of Ophiocordyceps unilateralis complex species in the future.
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- 2023
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21. Pseudoxenochalara gen. nov. (Dermateaceae, Helotiales), with P. grumantiana sp. nov. from the Svalbard archipelago
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Vadim Alexandrovich Iliushin and Irina Yuryevna Kirtsideli
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dermateaceae ,helotiales ,multi-gene phylogeny ,arctic tundra ,svalbard ,Plant ecology ,QK900-989 - Abstract
The family Dermateaceae belongs to the Helotiales order, the class Leotiomycetes, and consists of 14 genera. In this study, we introduce the new genus Pseudoxenochalara gen. nov. to the Dermateaceae family, which is supported by morphological observations and multilocus phylogenetic analysis. Partial sequences of the loci encoding β-tubulin (BenA), ribosomal polymerase II second largest subunit (RPB2), 28S rDNA (LSU) and internal transcribed spacer rDNA region (ITS1-5.8S-ITS2) were analysed. This genus comprises one new species, P. grumantiana, isolated from the soil of the Arctic tundra near the settlement of Barentsburg (the Svalbard archipelago). The asexual morph of P. grumantiana was described. The sequences data, as well as the macroand micromorphological characteristics distinguish P. grumantiana from all known species in the Dermateaceae family.
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- 2023
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22. Morphological and phylogenetic analyzes reveal two new species of Melanconiella from Fujian Province, China.
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Taichang Mu, Jinhui Chen, Zhiying Zhao, Weibin Zhang, Stephenson, Steven L., Chenjie Yang, Mengjia Zhu, Hailan Su, Pu Liu, Xiayu Guan, and Junzhi Qiu
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RIBOSOMAL DNA ,RNA polymerase II ,SPECIES ,HOST plants ,PHYTOPATHOGENIC microorganisms ,ENDOPHYTIC fungi - Abstract
Introduction: Species of Melanconiella include a diverse array of plant pathogens as well as endophytic fungi. Members of this genus have been frequently collected from the family Betulaceae (birches) in Europe and North America. Little, however, if known concerning the distribution of Melanconiella and/or their potential as pathogens of other plant hosts. Methods: Fungi were noted and isolated from diseased leaves of Loropetalum chinense (Chinese fringe flower) and Camellia sinensis (tea) in Fujian Province, China. Genomic DNA was extracted from fungal isolates and the nucleotide sequences of four loci were determined and sued to construct phylogenetic trees. Morphological characteristics of fungal structures were determined via microscopic analyses. Results: Four strains and two new species of Melanconiella were isolated from infected leaves of L. chinense and C. sinensis in Fujian Province, China. Based on morphology and a multi-gene phylogeny of the internal transcribed spacer regions with the intervening 5.8S nrRNA gene (ITS), the 28S large subunit of nuclear ribosomal RNA (LSU), the second largest subunit of RNA polymerase II (RPB2), and the translation elongation factor 1-a gene (TEF1-a), Melanconiella loropetali sp. nov. and Melanconiella camelliae sp. nov. were identified and described herein. Detailed descriptions, illustrations, and a key to the known species of Melanconiella are provided. Discussion: These data identify new species of Melanconiella, expanding the potential range and distribution of these dark septate fungi. The developed keys provide a reference source for further characterization of these fungi. [ABSTRACT FROM AUTHOR]
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- 2023
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23. Exploring the Diversity and Systematics of Phaeosphaeriaceae : Taxonomic Novelties from Ecologically Diverse Habitats and Their Phylogenetic Resolution.
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Wanasinghe, Dhanushka N. and Maharachchikumbura, Sajeewa S. N.
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HABITATS , *SPECIES distribution , *ASCOMYCETES , *FAMILY relations - Abstract
Simple Summary: Our study describes several species of Phaeosphaeriaceae found in terrestrial habitats in Sichuan Province, China. We used morphological and molecular data to accurately delimit these species and determine their taxonomic relationships within the family. Our findings contribute to understanding fungal diversity in China and provide a basis for future studies exploring the ecological roles and biotechnological potential of these fungi. Additionally, our multi-gene phylogenetic approach provides increased accuracy and resolution in the delimitation of species boundaries within Phaeosphaeriaceae. The family Phaeosphaeriaceae is a diverse group of ascomycetous fungi that are commonly found in terrestrial habitats worldwide. In recent years, there has been increasing interest in the biodiversity of Phaeosphaeriaceae in China, particularly in Sichuan Province, which has not been fully explored for its high fungal diversity. In our study, we conducted extensive surveys in Sichuan Province to identify and describe new species of Ascomycota with diverse habitats. Here, we present a taxonomic revision of Phaeosphaeriaceae with taxonomic novelties from terrestrial habitats in Sichuan Province based on a multi-gene phylogenetic approach. Our study focuses on the description of four new species of Phaeosphaeriaceae, representing novel additions to the diversity of this fungal family. Using a combination of morphological and molecular data, we provide detailed descriptions of the new taxa and their placement within the family. Additionally, we discuss the phylogenetic relationships of these new taxa with other members of Phaeosphaeriaceae, providing insights into the correct taxonomic classification of the family. Our taxonomic revision contributes to understanding fungal diversity in China and provides a foundation for future studies investigating the taxonomy and ecological roles of Phaeosphaeriaceae fungi. Furthermore, our multi-gene phylogenetic approach provides increased resolution and accuracy in the delimitation of species boundaries within the family. Our study highlights the importance of continued exploration and taxonomic revision in order to fully understand the diversity and distribution of fungal species in China and beyond. New species: Paraloratospora sichuanensis, Phaeosphaeria chengduensis, P. sichuanensis, and Septoriella shoemakeri. New combinations: Paraloratospora breonadiae, P. fructigena, Septoriella ammophilicola, S. asparagicola, S. festucae, S. luzulae, and S. verrucispora. New names: Septoriella paradactylidis, and S. neomuriformis. [ABSTRACT FROM AUTHOR]
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- 2023
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24. تشخیص گونه های Cytospora دخیل در بیماری مرکب زوال درختان انگور در شهرستانهای میاندوآب و ملکان.
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زهرا محمودیان, عبدالله احمد پور, and و یورت قوستا
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PLANT productivity ,WOOD ,AUTUMN ,GRAPES ,BIOTIC communities - Abstract
Grapevine decline disease (GDD) complex is a major global viticulture problem associated with a multi-year decrease in plant productivity and an increase in vine mortality, resulting in important economic losses to the viticulture industry. More than 35 fungal genera have been involved in the GDD complex, and the genus Cytospora has also been reported as one of the genera included in the disease-causing complex. This study aimed to identify Cytospora species involved in GDD complex in the vineyards of Miyandoab (West Azarbaijan province) and Malekan (East Azarbaijan province) Counties. So, during the summer and autumn of 2020-2021, sampling was done from the diseased plants showing symptoms of shoot wilting and die-back, bark and wood discoloration, brown to black discoloration of vascular tissues, and wood canker. The fungal isolation was done based on common phytopathological methods, and 78 isolates with the common characteristics of the genus Cytospora were isolated and purified. Based on the results combining morphological characteristics and sequence data obtained from three genomic regions, ITS-rDNA, TUB2, and RPB2, four species viz., C. chrysosperma (15 isolates), C. ershadii (24 isolates), C. salicina (28 isolates), and C. viticola (11 isolates) were identified. Cytospora viticola is a new species for the fungal biota of Iran, and grapevine is reported as a new host (matrix nova) for C. ershadii in Iran and the world. Pathogenicity of the selected fungal isolates from the identified species was confirmed on shoots of the Thompson seedless cultivar based on Koch's postulates. The results of pathogenicity tests showed that all isolates were pathogenic, although C. ershadii and C. chrysosperma isolates had the highest and C. viticola isolates had the lowest virulence. The results of this study showed the presence of new species of Cytospora involved in the GDD complex in the studied area and increased our knowledge about the host range of Cytospora spp. This information can be used in devising effective strategies for managing GDD complex. [ABSTRACT FROM AUTHOR]
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- 2023
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25. Nine new species of black lichenicolous fungi from the genus Cladophialophora (Chaetothyriales) from two different climatic zones of China.
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Runlei Chang, Yichen Wang, Yanyu Liu, Yiran Wang, Shiguo Li, Guoyan Zhao, Susu Zhang, Meixue Dai, Xiaoxiao Zheng, Bose, Tanay, and Hongli Si
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CLIMATIC zones ,FUNGI ,SPECIES ,RIBOSOMAL RNA ,FIELD research ,LICHENS - Abstract
Lichenicolous fungi are parasites of lichens. Many of these fungi are referred to as "black fungi". A diversity of these black fungi include species that are pathogenic to humans and plants. A majority of black fungi reside in the phylum Ascomycota within the sub-classes Chaetothyriomycetidae and Dothideomycetidae. To explore the diversity of lichenicolous "black fungi" associated with lichens in China, we conducted several field surveys in the Inner Mongolia Autonomous Region and Yunnan Province between 2019 and 2020. We recovered 1,587 fungal isolates from the lichens collected during these surveys. During the preliminary identification of these isolates using the complete internal transcribed spacer (ITS), partial large subunit of nuclear ribosomal RNA gene (LSU), and small subunit of nuclear ribosomal RNA gene (SSU), we identified 15 fungal isolates from the genus Cladophialophora. However, these isolates had low sequence similarities with all known species from the genus. Therefore, we amplified additional gene regions, such as, translation elongation factor (TEF) and partial β-tubulin gene (TUB), and constructed a multi-gene phylogeny using maximum likelihood, maximum parsimony, and Bayesian inference. In our datasets, we included type sequences where available for all Cladophialophora species. Phylogenetic analyses revealed that none of the 15 isolates belonged to any of the previously described species in the genus. Therefore, using both morphological and molecular data, we classified these 15 isolates as nine new species within the genus Cladophialophora: C. flavoparmeliae, C. guttulate, C. heterodermiae, C. holosericea, C. lichenis, C. moniliformis, C. mongoliae, C. olivacea, and C. yunnanensis. The outcome from this study shows that lichens are an important refugia for black lichenicolous fungi, such as those from Chaetothyriales. [ABSTRACT FROM AUTHOR]
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- 2023
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26. Two new fungal genera (Diaporthales) found on Dipterocarpaceae in Thailand.
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Xia Tang, Yong-Zhong Lu, Dissanayake, Lakmali S., Goonasekara, Ishani D., Jayawardena, Ruvishika S., Yuan-Pin Xiao, Hyde, Kevin D., Xue-Mei Chen, and Ji-Chuan Kang
- Subjects
DIPTEROCARPACEAE ,PLANT cells & tissues ,INVASIVE plants ,CROPS ,FOREST plants ,APICOMPLEXA ,ENDOPHYTIC fungi - Abstract
Diaporthales is a species-rich order of fungi that includes endophytes, saprobes, and pathogens associated with forest plants and crops. They may also occur as parasites or secondary invaders of plant tissues injured or infected by other organisms or inhabit living animal and human tissues, as well as soil. Meanwhile, some severe pathogens wipe out large-scale cultivations of profitable crops, timber monocultures, and forests. Based on morphological and phylogenetic analyses of combined ITS, LSU, tef1-α, and rpb2 sequence data, generated using maximum likelihood (ML), maximum parsimony (MP), and MrBayes (BI), we introduce two new genera of Diaporthales found in Dipterocarpaceae in Thailand, namely Pulvinaticonidioma and Subellipsoidispora. Pulvinaticonidioma is characterized by solitary, subglobose, pycnidial, unilocular conidiomata with the internal layers convex and pulvinate at the base; hyaline, unbranched, septate conidiophores; hyaline, phialidic, cylindrical to ampulliform, determinate conidiogenous cells and hyaline, cylindrical, straight, unicellular, and aseptate conidia with obtuse ends. Subellipsoidispora has clavate to broadly fusoid, short pedicellate asci with an indistinct J-apical ring; biturbinate to subellipsoidal, hyaline to pale brown, smooth, guttulate ascospores that are 1-septate and slightly constricted at the septa. Detailed morphological and phylogenetic comparisons of these two new genera are provided in this study. [ABSTRACT FROM AUTHOR]
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- 2023
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27. Taxonomy and Phylogeny of Eight New Acrophialophora Species (Sordariales, Chaetomiaceae) from China.
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Peng, Lan, Zhang, Yan-Wei, Wang, Hai-Yan, Dong, Chun-Bo, Chen, Wan-Hao, Liang, Jian-Dong, and Han, Yan-Feng
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PHYLOGENY , *SPECIES , *SOIL sampling - Abstract
The genus Acrophialophora belongs to the family Chaetomiaceae. With the addition of new species and transferred species from other genera, the genus Acrophialophora has expanded. In this study, eight new species related to Acrophialophora were isolated from soil samples in China. Using muti-locus phylogenetic (ITS, LSU, tub2 and RPB2) analysis combined with morphological characteristics, eight new species (Acrophialophora curvata, A. fujianensis, A. guangdongensis, A. longicatenata, A. minuta, A. multiforma, A. rhombica, and A. yunnanensis) are described. Descriptions, illustrations, and notes of the new species are also provided. [ABSTRACT FROM AUTHOR]
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- 2023
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28. Taxonomic Novelties and New Records of Amanita Subgenus Amanitina from Thailand.
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Liu, Yuan S., Liu, Jian-Kui, Kumla, Jaturong, Suwannarach, Nakarin, and Lumyong, Saisamorn
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MYCORRHIZAL fungi - Abstract
The Amanita subgenus Amanitina contains six sections, and the species diversity of this subgenus has still not been explored in Thailand. Twenty samples collected in 2019 and 2020, which had the morphological characteristics of the Amanita subgen. Amanitina, were observed in this study. Both the microscopical characteristics and multi-gene phylogenetic analyses of the ITS, nrLSU, RPB2, TEF1-α, and TUB gene regions revealed that the 20 samples represented nine species and dispersed into four sections. Remarkably, three taxa were different from any other currently known species. Here, we describe them as new to science, namely A. albifragilis, A. claristriata, and A. fulvisquamea. Moreover, we also recognized six interesting taxa, including four records that were new to Thailand, viz. A. cacaina, A. citrinoannulata, A. griseofarinosa, and A. neoovoidea, as well as two previously recorded species, A. caojizong and A. oberwinkleriana. Moreover, we provide the first RPB2 and TEF1-α gene sequences for A. cacaina. Detailed descriptions, illustrations as line drawings, and comparisons with related taxa are provided. [ABSTRACT FROM AUTHOR]
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- 2023
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29. Two new Trichoderma species (Hypocreales, Hypocreaceae) isolated from decaying tubers of Gastrodia elate.
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Chuwen Ye, Tingting Jing, Yuru Sha, Minghe Mo, and Zefen Yu
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RIBOSOMAL DNA , *TUBERS , *HYPOCREALES , *SPECIES , *RNA polymerases , *TRICHODERMA , *SEQUENCE analysis , *INTRODUCED species - Abstract
Species of Trichoderma are widely distributed around the world. In this study, two new species in Trichoderma, named as T. albidum and T. variegatum, were introduced and illustrated. These species were isolated from diseased tubers of Gastrodia elata in China and identified based on morphological characteristics and multi-gene sequence analyses of three loci that is the internal transcribed spacer regions of the ribosomal DNA (ITS), the translation elongation factor 1-α encoding gene (tef1-α) and the gene encoding the second largest nuclear RNA polymerase subunit (rpb2). Distinctions between the new species and their close relatives were discussed. According to results of the phylogenetic analyses, T. albidum belonged to the Harzianum clade and T. variegatum are grouped with species of the Spirale clade. The expansion of two clades provided research foundations for the prevention and control of tuber diseases in G. elata. [ABSTRACT FROM AUTHOR]
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- 2023
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30. Two new species of Colletotrichum (Glomerellaceae, Glomerellales) causing walnut anthracnose in Beijing.
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Lin Zhang, Yue-Qi Yin, Li-Li Zhao, Yu-Qing Xie, Jing Han, and Ying Zhang
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ANTHRACNOSE , *COLLETOTRICHUM , *COLLETOTRICHUM gloeosporioides , *DNA sequencing , *CHITIN synthase , *HOST plants , *WALNUT , *PHYTOPATHOGENIC microorganisms - Abstract
Colletotrichum species are plant pathogens, saprobes and endophytes on various plant hosts. It is regarded as one of the 10 most important genera of plant pathogens in the world. Walnut anthracnose is one of the most severe diseases affecting walnut productivity and quality in China. In this study, 162 isolates were obtained from 30 fruits and 65 leaf samples of walnut collected in Beijing, China. Based on morphological characteristics and DNA sequence analyses of the concatenated loci, namely internal transcribed spacer (ITS), glyceraldehyde-3-phosphate dehydrogenase (GAPDH), actin (ACT), chitin synthase 1 (CHS-1) and beta-tubulin (TUB2), these isolates were identified as two novel species of Colletotrichum, i.e. C. juglandicola and C. peakense. Koch’s postulates indicated that both C. juglandicola and C. peakense could cause anthracnose in walnut. [ABSTRACT FROM AUTHOR]
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- 2023
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31. New and Interesting Fungi. 6.
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Crous, P. W., Akulov, A., Balashov, S., Boers, J., Braun, U., Castillo, J., Delgado, M. A., Denman, S., Erhard, A., Gusella, G., Jurjević, Ž., Kruse, J., Malloch, D. W., Osieck, E. R., Polizzi, G., Schumacher, R. K., Slootweg, E., Starink-Willemse, M., van Iperen, A. L., and Verkley, G. J. M.
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EPITOPES , *HELOTIALES , *FUNGAL phylogeny , *ACREMONIUM , *LICHENS - Abstract
Three new genera, six new species, three combinations, six epitypes, and 25 interesting new host and / or geographical records are introduced in this study. New genera: Neoleptodontidium (based on Neoleptodontidium aquaticum), and Nothoramularia (based on Nothoramularia ragnhildianicola). New species: Acremonium aquaticum (from cooling pad water, USA, Cladophialophora laricicola (on dead wood of Larix sp., Netherlands), Cyphellophora neerlandica (on lichen on brick wall, Netherlands), Geonectria muralis (on moss growing on a wall, Netherlands), Harposporium illinoisense (from rockwool, USA), and Neoleptodontidium aquaticum (from hydroponic water, USA). New combinations: Cyphellophora deltoidea (based on Anthopsis deltoidea), Neoleptodontidium aciculare (based on Leptodontidium aciculare), and Nothoramularia ragnhildianicola (based on Ramularia ragnhildianicola). Epitypes: Cephaliophora tropica (from water, USA), Miricatena prunicola (on leaves of Prunus serotina, Netherlands), Nothoramularia ragnhildianicola (on Ragnhildiana ferruginea, parasitic on Artemisia vulgaris, Germany), Phyllosticta multicorniculata (on needles of Abietis balsamea, Canada), Thyronectria caraganae (on twigs of Caragana arborescens, Ukraine), and Trichosphaeria pilosa (on decayed Salix branch, Netherlands). Furthermore, the higher order phylogeny of three genera regarded as incertae sedis is resolved, namely Cephaliophora (Ascodesmidaceae, Pezizales), Miricatena (Helotiales, Leotiomycetes), and Trichosphaeria (Trichosphaeriaceae, Trichosphaeriales), with Trichosphaeriaceae being an older name for Plectosphaerellaceae. [ABSTRACT FROM AUTHOR]
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- 2023
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32. Phytophthora alticola and P. boodjera associated with decline of young Eucalyptus smithii trees in Uruguay.
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De Benedetti, Franco, Moreira, Victoria, Mondino, Pedro, and Alaniz, Sandra
- Subjects
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PHYTOPHTHORA , *EUCALYPTUS , *ROOT rots , *TREES , *EUCALYPTUS globulus , *HEAT shock proteins - Abstract
Eucalyptus production mainly destined to cellulose pulp production has expanded strongly in the last 30 years in Uruguay. Eucalyptus smithii has recently emerged as a promising species for cellulose pulp production. However, an average of 40% of young trees die during the first and second summer of post‐planting. In this study, 32 Phytophthora isolates were obtained from 132 E. smithii young trees with root and collar rot symptoms, confirming the association of Phytophthora to E. smithii decline. Based on phylogenetic analysis of ITS, TUB2, cox1 and HSP90 gene regions and phenotypical characteristics, two species belonging to the genera Phytophthora clade 4 were identified, P. alticola (96%) and P. boodjera (4%). Tested isolates of both species significantly reduced both shoot and root dry weights of inoculated E. smithii seedlings compared to control plants. To our best knowledge, this is the first time that P. alticola and P. boodjera are recovered from young symptomatic E. smithii trees in commercial plantations as well as the first time these species are found in the Americas. [ABSTRACT FROM AUTHOR]
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- 2023
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33. Cadophora species from marine glaciers in the Qinghai-Tibet Plateau: an example of unsuspected hidden biodiversity
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Bingqian Zhang, Xiaoguang Li, Guojie Li, Qi-Ming Wang, and Manman Wang
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Cold-adapted fungi ,Dark biodiversity ,Marine glacier ,Multi-gene phylogeny ,Ploettnerulaceae ,Botany ,QK1-989 - Abstract
Abstract Large numbers of marine glaciers in the Qinghai-Tibet Plateau are especially sensitive to changes of climate and surface conditions. They have suffered fast accumulation and melting and retreated quickly in recent years. In 2017, we surveyed the cold-adapted fungi in these unique habitats and obtained 1208 fungal strains. Based on preliminary analysis of ITS sequences, 41 isolates belonging to the genus Cadophora were detected. As one of the most frequently encountered genera, the Cadophora isolates were studied in detail. Two phylogenetic trees were constructed: one was based on the partial large subunit nrDNA (LSU) to infer taxonomic placement of our isolates and the other was based on multi-locus sequences of LSU, ITS, TUB and TEF-1α to investigate more exact phylogenetic relationships between Cadophora and allied genera. Combined with morphological characteristics, nine Cadophora species were determined, including seven new to science. Among the new species, only C. inflata produces holoblastic conidia and all the others express phialidic conidiogenesis. All isolates have optimum growth temperature at 20 °C or 25 °C. With more species involved, the currently circumscribed genus became obviously paraphyletic. All members are clustered into two main clades: one clade mainly includes most of the Cadophora species which have phialidic conidiogenesis and we refer to as ‘Cadophora s. str.’; the remaining Cadophora species have multiform conidiogenesis and are clustered in the second clade, with members of other genera in Ploettnerulaceae interspersed among the subclades. The results show a high diversity of Cadophora from marine glaciers in the Qinghai-Tibet Plateau and most of them are novel species.
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- 2022
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34. Six new species of zombie-ant fungi from Yunnan in China.
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Tang, Dexiang, Huang, Ou, Zou, Weiqiu, Wang, Yuanbing, Wang, Yao, Dong, Quanying, Sun, Tao, Yang, Gang, and Yu, Hong
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ANT behavior ,SPECIES ,PATHOGENIC fungi ,FUNGAL spores ,CARPENTER ants ,TROPICAL forests - Abstract
Some Ophiocordyceps species infecting ants are able to manipulate the host behavior. The hosts are manipulated in order to move to location that are advantageous for fungal spore transmission. Ophiocordyceps species that are able to manipulate the ant's behavior are called "zombie-ant fungi". They are widespread within tropical forests worldwide, with relatively few reports from subtropical monsoon evergreen broad-leaf forest. Zombie-ant fungi have been described and reported in different countries worldwide. However, there were a few reports from China. This study proposed six new species of zombie-ant fungi from China based on multi-gene (SSU, LSU, TEF, RPB1 and RPB2) phylogenetic analyses and morphological characteristics. Six novel species of Ophiocordyceps from China were identified as the Ophiocordyceps unilateralis core clade, forming a separate lineage with other species. Six novel species of Ophiocordyceps with hirsutella-like asexual morphs exclusively infecting ants were presented herein, namely, Ophiocordyceps acroasca, Ophiocordyceps bifertilis, Ophiocordyceps subtiliphialida, Ophiocordyceps basiasca, Ophiocordyceps nuozhaduensis and Ophiocordyceps contiispora. Descriptions and illustrations for six taxon were provided. Five of these species were collected from the subtropical monsoon evergreen broad-leaf forest, and one was collected from the rainforest and subtropical monsoon evergreen broad-leaf forest. This work proposes that the same host of Camponotus can be infected by multiple ant pathogenic fungi, while multiple ants of Polyrhachis can be infected by the same pathogenic fungi at the same time. This study contributes towards a better understanding of the evolutionary relationship between hosts and fungi, and provides novel insights into the morphology, distribution, parasitism, and ecology of Ophiocordyceps unilateralis sensu lato. We have provided a method for obtaining living cultures of Ophiocordyceps unilateralis complex species and their asexual morphs based on the living cultures, which is of significant value for further studies of Ophiocordyceps unilateralis complex species in the future. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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35. Clonal Expansion in Multiple Phyllosticta Species Causing Citrus Black Spot or Similar Symptoms in China.
- Author
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Wang, Wen, Xiong, Tao, Zeng, Yating, Li, Wenwen, Jiao, Chen, Xu, Jianping, and Li, Hongye
- Subjects
- *
SPECIES , *SPECIES distribution , *GENETIC variation , *LEAF spots , *CITRUS , *PHYTOPATHOGENIC microorganisms , *SYMPTOMS , *CITRUS greening disease - Abstract
Phyllosticta spp. are important pathogens of citrus plants. Several Phyllosticta species associated with Citrus species grown in China have been reported; however, the relative prevalences of individual species and the distributions of their genotypes among host Citrus species remain largely unknown. In this study, we conducted an extensive survey of Phyllosticta species across 11 citrus-producing provinces in southern China. From fruits and leaves with black spots or black-spot-like symptoms, a total of 461 Phyllosticta strains were isolated. Based on molecular (ITS, actA, tef1, gapdh, LSU, and rpb2 sequences) and morphological data, the strains were systematically identified as belonging to five species: P. capitalensis, P. citrichinaensis, P. citriasiana, P. citricarpa, and P. paracitricarpa. To further understand intraspecific genetic diversity and relationships, strains of five species from different geographic and host sources were analyzed based on the multilocus sequence data. Our population genetic analyses revealed that all five Phyllosticta species on citrus showed evidence for clonal dispersals within and among geographic regions. In addition, pathogenicity tests using representative strains showed that all five species can cause disease on the tested Citrus spp. We discuss the implications of our results for the control and management of Citrus Black Spot and related diseases. [ABSTRACT FROM AUTHOR]
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- 2023
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36. Fungal Diversity Associated with Thirty-Eight Lichen Species Revealed a New Genus of Endolichenic Fungi, Intumescentia gen. nov. (Teratosphaeriaceae).
- Author
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Si, Hongli, Wang, Yichen, Liu, Yanyu, Li, Shiguo, Bose, Tanay, and Chang, Runlei
- Subjects
- *
LICHENS , *SPECIES , *FUNGI , *PHYTOPATHOGENIC microorganisms , *SAPROPHYTES , *ASCOMYCETES - Abstract
Fungi from the Teratosphaeriaceae (Mycosphaerellales; Dothideomycetes; Ascomycota) have a wide range of lifestyles. Among these are a few species that are endolichenic fungi. However, the known diversity of endolichenic fungi from Teratosphaeriaceae is far less understood compared to other lineages of Ascomycota. We conducted five surveys from 2020 to 2021 in Yunnan Province of China, to explore the biodiversity of endolichenic fungi. During these surveys, we collected multiple samples of 38 lichen species. We recovered a total of 205 fungal isolates representing 127 species from the medullary tissues of these lichens. Most of these isolates were from Ascomycota (118 species), and the remaining were from Basidiomycota (8 species) and Mucoromycota (1 species). These endolichenic fungi represented a wide variety of guilds, including saprophytes, plant pathogens, human pathogens, as well as entomopathogenic, endolichenic, and symbiotic fungi. Morphological and molecular data indicated that 16 of the 206 fungal isolates belonged to the family Teratosphaeriaceae. Among these were six isolates that had a low sequence similarity with any of the previously described species of Teratosphaeriaceae. For these six isolates, we amplified additional gene regions and conducted phylogenetic analyses. In both single gene and multi-gene phylogenetic analyses using ITS, LSU, SSU, RPB2, TEF1, ACT, and CAL data, these six isolates emerged as a monophyletic lineage within the family Teratosphaeriaceae and sister to a clade that included fungi from the genera Acidiella and Xenopenidiella. The analyses also indicated that these six isolates represented four species. Therefore, we established a new genus, Intumescentia gen. nov., to describe these species as Intumescentia ceratinae, I. tinctorum, I. pseudolivetorum, and I. vitii. These four species are the first endolichenic fungi representing Teratosphaeriaceae from China. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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37. Identification and characterization of fungi associated with leaf spot/blight and melting-out of turfgrass in Algeria.
- Author
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BESSADAT, NABAHAT, HAMON, BRUNO, BATAILLÉ-SIMONEAU, NELLY, HAMINI-KADAR, NISSERINE, KIHAL, MABROUK, and SIMONEAU, PHILIPPE
- Subjects
- *
IDENTIFICATION of fungi , *LEAF spots , *LEAF anatomy , *CURVULARIA , *DISEASE management , *WATER quality - Abstract
Symptoms of foliar blight were observed on turfgrass in Oran (Algeria), including yellow chlorotic patches on leaves during the 2020 summer (temperatures between 35 and 40°C). Symptoms extended downward from leaf tips and entire leaves became blighted, leading to irregular discoloured areas that later turned brown. Isolations from infected plants included 214 isolates identified as Curvularia or Bipolaris, based on morphological traits. Other isolates included Fusarium, Myrothecium and Acremonium spp. Three molecular loci, ITS rDNA, gpd and tef1, were amplified and sequenced. Morphological and multi-locus phylogenetic analyses revealed four fungal species viz. B. sorokiniana, C. spicifera, C. verruculosa, C. geniculata, and two additional Curvularia lineages, some of these fungi are reported are first records for Algeria. Koch's postulates were confirmed by inoculating potted turfgrass with spore suspensions of 16 isolates and re-isolating of the inoculated pathogens from symptomatic tissues. Bipolaris sorokiniana was the most virulent pathogen causing numerous foliar necrotic lesions similar to those observed in the field. Other isolates infected basal leaves only, and caused less severe symptoms. The results show that Curvularia species may be secondary pathogens infecting stressed plants, and that simultaneous occurrence of high temperatures and poor water quality have influenced disease progression. Correct identification of these pathogens is important for applying appropriate and timely disease management. [ABSTRACT FROM AUTHOR]
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- 2023
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38. Leaf spot of Kerria japonica caused by Diaporthe pescicola in China.
- Author
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Zhang, Hulei, Wang, Chunxia, Wang, Shenhai, and Mao, Shengfeng
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LEAF spots , *PREVENTIVE medicine , *CALMODULIN - Abstract
This article reports the first known occurrence of leaf spot of Kerria japonica caused by Diaporthe pescicola in China and worldwide. Leaves of K. japonica with leaf spot symptoms were collected in September 2020 from Nanjing, Jiangsu, China. Leaf lesions were of irregular shape and sizes forming mostly in the middle of the leaves, and most of the lesions were white and hazel in colour. A fungus was isolated from diseased leaves and identified as Diaporthe pescicola based on morphological features and multigene phylogenetic analysis of the internal transcribed spacer (ITS) region, elongation factor 1-alpha (EF1-α), beta-tubulin (β-tub), histone H3 (HIS) and calmodulin (CAL) genes. Three strains of isolated fungus caused leaf spot symptoms on inoculated wounded leaves of K. japonica, which were similar to the natural symptoms observed in the field. This disease greatly reduces the ornamental value of affected plants, and identification of the pathogen is significant for the prevention and control of the disease. [ABSTRACT FROM AUTHOR]
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- 2023
- Full Text
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39. Calonectria species diversity on eucalypts in Indonesia.
- Author
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Tarigan, Marthin, Pham, Nam Q, Jami, Fahimeh, Oliveira, Leonardo SS, Saha, Muhammad Agni, Durán, Alvaro, and Wingfield, Michael J
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SPECIES diversity ,EUCALYPTUS ,PLANTATIONS ,PRODUCTION losses ,MYCOSES ,NUCLEOTIDE sequence ,DNA sequencing - Abstract
Diseases increasingly threaten the rapidly expanding eucalypt plantation industry of Indonesia. Of these, leaf blight caused by Calonectria spp. is considered amongst the more important problems, causing losses both in production nurseries and plantations. Using DNA sequence data based on the translation elongation factor 1-alpha, β-tubulin, calmodulin, and histone H3 gene regions, 163 isolates of Calonectria spp. obtained from diseased eucalypt seedlings in nurseries and infected leaves in plantations were identified as Calonectria acicola, C. hawksworthii, C. lombardiana, C. multiseptata, C. pseudoreteaudii and C. reteaudii. Of these, C. lombardiana was by far the most commonly isolated and accounted for approximately 84% of the isolates. Given the predominance of this fungus, it is interesting that it has not previously been reported from Indonesia. This is also the first report of C. pseudoreteaudii and C. acicola from the country. All six species of Calonectria were found to be pathogenic to eucalypts in artificial inoculation studies. Calonectria lombardiana was generally the most pathogenic species and eucalypt genotypes displayed different levels of susceptibility, providing confidence that disease caused by this fungus can be reduced by selecting disease-tolerant planting stock. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
40. Phylogeny and systematics of the genus Clonostachys.
- Author
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Yao Wang, De-Xiang Tang, Run Luo, Yuan-Bing Wang, Thanarut, Chinnapan, Van-Minh Dao, and Hong Yu
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PHYLOGENY ,LOCUS (Genetics) ,SPECIES ,PARSIMONIOUS models ,HABITATS - Abstract
Introduction: Clonostachys, a genus with rich morphological and ecological diversity in Bionectriaceae, has a wide distribution among diverse habitats. Methods and Results: In the present study, a phylogenetic framework is reconstructed for the family Bionectriaceae focusing on Clonostachys through increased taxonsampling using the nrLSU sequence. Through surveying Clonostachys in China, Vietnam, and Thailand over the past 3 years, seven Clonostachys spp. were found and identified. Two new species, C. chuyangsinensis and C. kunmingensis, are described and illustrated based on morphological characteristics and molecular data. The phylogenetic positions of the seven species were evaluated based on four genomic loci (ITS, nrLSU, TUB2, and TEF1). Discussion: Moreover, the genetic divergence comparisons of Clonostachys species for three markers (ITS, TUB2, and TEF1) are also provided. The results indicated that the TEF1 sequence data provided the best resolution for distinguishing species of Clonostachys, followed by sequence data for the TUB2 and ITS regions. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
41. Colletotrichum Species on Cultivated Solanaceae Crops in Russia.
- Author
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Yarmeeva, Maria, Kutuzova, Irina, Kurchaev, Michael, Chudinova, Elena, Kokaeva, Ludmila, Belosokhov, Arseniy, Belov, Grigory, Elansky, Alexander, Pobedinskaya, Marina, Tsindeliani, Archil, Tsvetkova, Yulia, and Elansky, Sergey
- Subjects
COLLETOTRICHUM ,SOLANACEAE ,CULTIVATED plants ,SPECIES ,CROPS ,ANTHRACNOSE ,TOMATOES - Abstract
Colletotrichum species are the causal agents of potato and tomato diseases, such as black dot and anthracnose. Several new species and species complexes were recently established. Thereby, a reassessment of the genus diversity is required. The study revealed two species, Colletotrichum coccodes and Colletotrichum nigrum, as Russia's main disease agents of cultivated Solanaceae plants. Black dot and anthracnose in potato were caused exclusively by C. coccodes, whereas the same diseases in tomato, eggplant, and pepper were predominately caused by C. nigrum. However, one isolate of C. coccodes was also identified as an agent of the tomato disease. Five potentially hybrid isolates were discovered. Morphological examination and pathogenicity assessment revealed no significant differences between the two Colletotrichum species. All isolates were sensitive to the fungicides azoxystrobin, difenoconazole, and thiabendazole, which are currently used in agriculture. This is the first report of the occurrence of C. nigrum in Russia. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
42. Morphology and Phylogeny Reveal Three Montagnula Species from China and Thailand.
- Author
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Sun, Ya-Ru, Zhang, Jing-Yi, Hyde, Kevin D., Wang, Yong, and Jayawardena, Ruvishika S.
- Subjects
PHYLOGENY ,MORPHOLOGY ,SPECIES ,MICROFUNGI ,TWIGS - Abstract
Four stains were isolated from two fresh twigs of Helwingia himalaica and two dead woods during investigations of micro-fungi in China and Thailand. Phylogenetic analyses of four gene regions LSU, ITS, SSU and tef1-α revealed the placement of these species in Montagnula. Based on the morphological examination and molecular data, two new species, M. aquatica and M. guiyangensis, and a known species M. donacina are described. Descriptions and illustrations of the new collections and a key to the Montagnula species are provided. Montagnula chromolaenicola, M. puerensis, M. saikhuensis, and M. thailandica are discussed and synonymized under M. donacina. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
43. Climacocystaceae fam. nov. and Gloeoporellaceae fam. nov., two new families of Polyporales (Basidiomycota).
- Author
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Shun Liu, Jun-Liang Zhou, Jie Song, Yi-Fei Sun, Yu-Cheng Dai, and Bao-Kai Cui
- Subjects
RIBOSOMAL DNA ,RNA polymerase II ,BASIDIOMYCOTA ,RIBOSOMAL RNA ,FAMILIES ,BAYESIAN analysis - Abstract
Polyporales is a diverse group of Agaricomycetes including more than 2,500 species belonging to 255 genera and 18 families. Recently, many studies focused on the classification of Polyporales, but the familial placements of some taxa remain uncertain. In this study, two new families, Climacocystaceae and Gloeoporellaceae of Polyporales, are proposed based on morphological characters and molecular data. Phylogenetic analyses of the two new families are inferred from the DNA sequences of the internal transcribed spacer regions (ITS), the large subunit of nuclear ribosomal RNA gene (nLSU), the largest subunit of RNA polymerase II gene (RPB1), the second largest subunit of RNA polymerase II gene (RPB2), and the translation elongation factor 1-a gene (TEF1). Furthermore, the divergence time of Polyporales was estimated as an additional taxonomic criterion based on the conserved regions of five DNA fragments (5.8S, nLSU, RPB1, RPB2, and TEF1). Bayesian evolutionary analysis revealed that the ancestor of Polyporales splits with a mean stem age of 136.53 Mya with a 95% highest posterior density (HPD) of 118.08-158.06 Mya. The mean stem ages of the families within Polyporales originated between 66.02 and 119.22 Mya, of which Climacocystaceae occurred in a mean stem age of 77.49 Mya with a 95% HPD of 61.45-93.16 Mya, and Gloeoporellaceae occurred in a mean stem age of 88.06 Mya with a 95% HPD of 67.15-107.76 Mya. [ABSTRACT FROM AUTHOR]
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- 2023
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44. Molecular phylogeny and taxonomy of the remarkable genus Leptoporus (Polyporales, Basidiomycota) with description of a new species from Southwest China.
- Author
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Shun Liu, Yi-Fei Sun, Xing Ji, Chang-Ge Song, Tai-Min Xu, and Bao-Kai Cui
- Abstract
Leptoporus is a rare and remarkable genus, mainly occurring in coniferous forests in the Northern Hemisphere. Recent phylogenetic studies showed that Leptoporus belongs to Irpicaceae in the phlebioid clade. It is worth noting that most species in the phlebioid clade can cause white-rot decay, except for the Leptoporus species, which can cause a brown-rot decay. In this study, we performed phylogenetic and taxonomic studies of Leptoporus and related genera. Molecular phylogenetic analyses were conducted based on sequences from multiple loci including the internal transcribed spacer (ITS) regions, the large subunit of nuclear ribosomal RNA gene (nLSU), the largest subunit of RNA polymerase II gene (RPB1), the second largest subunit of RNA polymerase II gene (RPB2), and the translation elongation factor 1-a gene (TEF1). Combined with morphological characteristics, a new species, Leptoporus submollis sp. nov., is discovered and illustrated from Southwest China. [ABSTRACT FROM AUTHOR]
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- 2023
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45. Pseudoxenochalara gen. nov. (Dermateaceae, Helotiales), with P. grumantiana sp. nov. from the Svalbard archipelago.
- Author
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ALEXANDROVICH ILIUSHIN, Vadim and YURYEVNA KIRTSIDELI, Irina
- Subjects
ARCHIPELAGOES ,RECOMBINANT DNA ,TUNDRAS ,LOCUS (Genetics) ,SPECIES ,PHYLOGENY - Abstract
Copyright of Botanica Serbica is the property of University of Belgrade, Institute of Botany & Botanical Garden Jevremovac and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
- Published
- 2023
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46. Systematic classification and phylogenetic relationships of the brown-rot fungi within the Polyporales.
- Author
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Liu, Shun, Chen, Yuan-Yuan, Sun, Yi-Fei, He, Xiao-Lan, Song, Chang-Ge, Si, Jing, Liu, Dong-Mei, Gates, Genevieve, and Cui, Bao-Kai
- Abstract
The brown-rot fungi play an important role in forest ecosystems; they can degrade celluloses and hemicelluloses of wood and maintain nutrient cycling. Some of the brown-rot fungi also have important economic value as medicinal or edible mushrooms. Recent studies showed that the ability to produce brown rot has evolved independently at least five times. Nevertheless, the Polyporales contains the vast majority of the species of the brown-rot fungi. In this study, the classification system of the brown-rot fungi within the Polyporales is revised. Furthermore, the phylogenetic relationships of brown-rot fungi within the Polyporales are analysed based on DNA sequences of multiple loci including the internal transcribed spacer (ITS) regions, the large subunit nuclear ribosomal RNA gene (nLSU), the small subunit nuclear ribosomal RNA gene (nSSU), the small subunit mitochondrial rRNA gene sequences (mtSSU), the translation elongation factor 1-α gene (TEF1), the RNA polymerase II largest subunit (RPB1) and the second subunit of RNA polymerase II (RPB2). The study showed that the brown-rot fungi within the Polyporales formed fourteen lineages, which are assigned at family level, including four new families: Auriporiaceae, Piptoporellaceae, Postiaceae, Taiwanofungaceae, and ten existing families: Adustoporiaceae, Dacryobolaceae, Fibroporiaceae, Fomitopsidaceae, Laetiporaceae, Laricifomitaceae, Phaeolaceae, Pycnoporellaceae, Sarcoporiaceae, and Sparassidaceae. Meanwhile, eleven new genera, viz., Austroporia, Aurantipostia, Austropostia, Daedalella, Nothofagiporus, Pseudoantrodia, Pseudofomitopsis, Rhodoantrodia, Tenuipostia, Wolfiporiella and Wolfiporiopsis are proposed; eighteen new species, viz., Amyloporia nivea, Antrodia subheteromorpha, Aurantipostia macrospora, Austropostia hirsuta, A. plumbea, A. subpunctata, Cystidiopostia subhibernica, Daedalella micropora, Fuscopostia subfragilis, Lentoporia subcarbonica, Melanoporia tropica, Neolentiporus tropicus, Phaeolus fragilis, Postia crassicontexta, Pseudoantrodia monomitica, Pseudofomitopsis microcarpa, Resinoporia luteola and Rhodonia subrancida are described; and twelve new combinations, viz., Austroporia stratosa, Austropostia brunnea, A. pelliculosa, A. punctata, Nothofagiporus venatus, Rhodoantrodia tropica, R. yunnanensis, Tenuipostia dissecta, Wolfiporiella cartilaginea, W. curvispora, W. dilatohypha and Wolfiporiopsis castanopsidis, are proposed. Illustrated descriptions of the new species are provided. Notes on the genera of brown-rot fungi within the Polyporales are provided. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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47. Taxonomy and phylogeny of Sanguinoderma rugosum complex with descriptions of a new species and a new combination.
- Author
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Yi-Fei Sun, Yu-Xuan Fang, and Bao-Kai Cui
- Abstract
Sanguinoderma is distributed in tropical and subtropical areas as a member of Amauroderma s. lat., and the economic values of Sanguinoderma led to high attention in the taxonomic studies. Previously, 16 species have been developed into Sanguinoderma. In this study, the taxonomic system of Sanguinoderma was reconducted based on morphological and multi-gene phylogenetic analyses, especially making a distinction for Sanguinoderma rugosum complex. Morphological analysis was based on the notes of macro- and micro morphological observations. Multi-gene phylogenetic analyses were used maximum likelihood (ML) and Bayesian inference (BI) analyses inferred from combined dataset of ITS, nLSU, rpb2, tef1, mtSSU, and nSSU. Combined with morphological characters and phylogenetic evidence, the results demonstrated that S. rugosum complex consists of five taxa, in which Sanguinoderma leucomarginatum was described as a new species, and it is characterized by the orbicular pilei with white to bu margin when fresh and clavate apical cells of pileipellis with septa. In addition, Amauroderma preussii was transferred to Sanguinoderma as a new combination due to its blood-red color-changed pore surface; it is characterized by the funnel-shaped, greyish brown, and glabrous pilei with strongly incurved margin. Detailed descriptions and photographs of the two species were provided. With the extension of this study, 18 species were accepted in Sanguinoderma, and 12 species among them were distributed in China. A key to accepted species of Sanguinoderma was also provided. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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48. Two novel entomopathogenic fungal species of Lecanicillium isolated from soil in China.
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Liu T, Chen W, Tang Y, Liu F, Yao L, Hu Q, Zhang K, and Weng Q
- Subjects
- China, Animals, Spores, Fungal genetics, Spores, Fungal growth & development, DNA, Ribosomal genetics, Aphids microbiology, Sequence Analysis, DNA, Virulence genetics, Soil Microbiology, Phylogeny, DNA, Fungal genetics, Hypocreales genetics, Hypocreales classification, Hypocreales isolation & purification, Moths microbiology
- Abstract
The genus Lecanicillium was established in 2001 based on the type species Lecanicillium lecani (former, Verticillium lecani), which is an important entomopathogenic fungus. To date, more than thirty species in the genus have been reported, but much more are waiting to discover. In this study, two novel species isolated from soil in east China were identified. They differ from known closely related species primarily in sporulation structure, conidia and colony morphological characteristics, and sequence variations in the LSU, SSU, ITS, and TEF gene regions of the ribosomal DNA. Multigene phylogenetic analysis has provided strong molecular evidence supporting the classification of the strains, AH13B2 and JX15A210 within the genus Lecanicillium. The new species are formally named as follows: L. anqingense sp. nov. and L. renii sp. nov., respectively. Bioassays conducted on the greater wax moth, Galleria mellonella and crucifer aphid, Lipaphis erysimi showed that both fungal strains exhibit virulence. When treating with 1 × 10
8 spores/mL, the two strains gave mortality of > 60% and > 80% to G. mellonella and L. erysimi, respectively. Moreover, the median lethal times (LT50 ) of L. renii JX15A210 and L. anqingense AH13B2 against G. mellonella and L. erysimi were recorded as 8.06 d and 4.18 d, and 10.63 d and 5.07 d, respectively. This research enhances the species diversity within the genus Lecanicillium and provides valuable genetic resources for the biological control of pests and the development of biocontrol agents., Competing Interests: Declarations. Ethics approval and consent to participate: Not applicable. Consent for publication: Not applicable. Competing interests: The authors declare no competing interests., (© 2025. The Author(s).)- Published
- 2025
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49. Morphology and molecular phylogeny reveal five new species of Hydnellum (Bankeraceae, Thelephorales) from China.
- Author
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Chang-Ge Song, Yi-Fei Sun, Dong-Mei Wu, Neng Gao, Shun Liu, Tai-Min Xu, and Bao-Kai Cui
- Subjects
MOLECULAR phylogeny ,ECTOMYCORRHIZAL fungi ,SPECIES ,BASIDIOSPORES ,SPECIES diversity - Abstract
The genus Hydnellum is a kind of ectomycorrhizal fungi that can play a role in the material cycle by connecting the plant roots to the soil, and some species of Hydnellum are medicinal fungi with vital research value. The species diversity of Hydnellum is unclear in China. In this study, five new species of Hydnellum are described from China based on morphological characters and phylogenetic analyses inferred from two datasets of ITS + LSU and ITS + LSU + SSU + RPB2 sequences. H. chocolatum is characterized by its chocolate basidiomata with the fibrillose, spongy to tomentose pileal surface, and subglobose to globose basidiospores measuring (4.5-)5-6 x 4-5(-5.8) |xm. H. concentricum is characterized by its zonate pileal surface, thin context, short stipe, presence of both simple septa and clamp connections in generative hyphae of spines, and subglobose to ellipsoidal basidiospores measuring (3.5-)4-5(-5.2) x (3.2-)3.5-5 |im. H. crassipileatum is characterized by its thick pileus with the reddish brown to grayish brown pileal surface, and subglobose to ellipsoidal basidiospores measuring 4-6(-6.5) x 4-5.5 |im. H. melanocarpum is characterized by its vinaceous brown to black pileus with spongy pileal surface, presence of both simple septa and clamp connections in generative hyphae of spines, and subglobose basidiospores measuring 4.5-5.5(-6) x (3.5-)3.8-5.1 |im. H. radiatum is characterized by its radially aligned stripes on pileal surface, grayish brown context, short stipe, and subglobose to ellipsoidal basidiospores measuring (3.5-)4-5 x 3-4.5(-5) |im. Full descriptions, illustrations, and phylogenetic trees to show the placement of the new species are provided. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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50. Cadophora species from marine glaciers in the Qinghai-Tibet Plateau: an example of unsuspected hidden biodiversity.
- Author
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Zhang, Bingqian, Li, Xiaoguang, Li, Guojie, Wang, Qi-Ming, and Wang, Manman
- Subjects
MARINE biodiversity ,GLACIERS ,SPECIES ,BIODIVERSITY ,CLIMATE change ,SEQUENCE analysis - Abstract
Large numbers of marine glaciers in the Qinghai-Tibet Plateau are especially sensitive to changes of climate and surface conditions. They have suffered fast accumulation and melting and retreated quickly in recent years. In 2017, we surveyed the cold-adapted fungi in these unique habitats and obtained 1208 fungal strains. Based on preliminary analysis of ITS sequences, 41 isolates belonging to the genus Cadophora were detected. As one of the most frequently encountered genera, the Cadophora isolates were studied in detail. Two phylogenetic trees were constructed: one was based on the partial large subunit nrDNA (LSU) to infer taxonomic placement of our isolates and the other was based on multi-locus sequences of LSU, ITS, TUB and TEF-1α to investigate more exact phylogenetic relationships between Cadophora and allied genera. Combined with morphological characteristics, nine Cadophora species were determined, including seven new to science. Among the new species, only C. inflata produces holoblastic conidia and all the others express phialidic conidiogenesis. All isolates have optimum growth temperature at 20 °C or 25 °C. With more species involved, the currently circumscribed genus became obviously paraphyletic. All members are clustered into two main clades: one clade mainly includes most of the Cadophora species which have phialidic conidiogenesis and we refer to as 'Cadophora s. str.'; the remaining Cadophora species have multiform conidiogenesis and are clustered in the second clade, with members of other genera in Ploettnerulaceae interspersed among the subclades. The results show a high diversity of Cadophora from marine glaciers in the Qinghai-Tibet Plateau and most of them are novel species. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
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