11 results on '"multi-scale dynamical systems"'
Search Results
2. DISCRETE GEOMETRIC SINGULAR PERTURBATION THEORY.
- Author
-
Jelbart, Samuel and Kueh, Christian
- Subjects
SINGULAR perturbations ,PERTURBATION theory ,DYNAMICAL systems ,FOLIATIONS (Mathematics) ,INVARIANT manifolds ,SUBMANIFOLDS - Abstract
. We propose a mathematical formalism for discrete multi-scale dynamical systems induced by maps which parallels the established geometric singular perturbation theory for continuous-time fast-slow systems. We identify limiting maps corresponding to both ‘fast’ and ‘slow’ iteration under the map. A notion of normal hyperbolicity is defined by a spectral gap requirement for the multipliers of the fast limiting map along a critical fixed-point manifold S. We provide a set of Fenichel-like perturbation theorems by reformulating pre-existing results so that they apply near compact, normally hyperbolic submanifolds of S. The persistence of the critical manifold S, local stable/unstable manifolds W
s/u loc (S) and foliations of Ws/u loc (S) by stable/unstable fibers is described in detail. The practical utility of the resulting discrete geometric singular perturbation theory (DGSPT) is demonstrated in applications. First, we use DGSPT to identify singular geometry corresponding to excitability, relaxation, chaotic and non-chaotic bursting in a map-based neural model. Second, we derive results which relate the geometry and dynamics of fast-slow ODEs with non-trivial time-scale separation and their Euler-discretized counterpart. Finally, we show that fast-slow ODE systems with fast rotation give rise to fast slow Poincar´e maps, the geometry and dynamics of which can be described in detail using DGSP [ABSTRACT FROM AUTHOR]- Published
- 2023
- Full Text
- View/download PDF
3. Enhancements of the G-Scheme Framework.
- Author
-
Valorani, Mauro, Ciottoli, Pietro Paolo, Malpica Galassi, Riccardo, Paolucci, Samuel, Grenga, Temistocle, and Martelli, Emanuele
- Abstract
The G-Scheme is a well established framework for multi-scale adaptive model reduction, whose effectiveness was demonstrated with reference to a number of test models, together with an identification of the critical areas that were in need of further theoretical and computational refinement. In this communication, we report on how we enhanced the solver performance. Two new features involving (i) the criteria to identify the fast and slow subspace dimensions, and (ii) a criterion to decide if and when the reuse of the CSP Basis is feasible without deteriorating the overall performance of the solver, have been proved able to increase significantly the computational efficiency of the solver without sacrificing its accuracy. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
4. A Factor Graph Description of Deep Temporal Active Inference
- Author
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Bert de Vries and Karl J. Friston
- Subjects
active inference ,free-energy principle ,factor graphs ,belief propagation ,message passing ,multi-scale dynamical systems ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Active inference is a corollary of the Free Energy Principle that prescribes how self-organizing biological agents interact with their environment. The study of active inference processes relies on the definition of a generative probabilistic model and a description of how a free energy functional is minimized by neuronal message passing under that model. This paper presents a tutorial introduction to specifying active inference processes by Forney-style factor graphs (FFG). The FFG framework provides both an insightful representation of the probabilistic model and a biologically plausible inference scheme that, in principle, can be automatically executed in a computer simulation. As an illustrative example, we present an FFG for a deep temporal active inference process. The graph clearly shows how policy selection by expected free energy minimization results from free energy minimization per se, in an appropriate generative policy model.
- Published
- 2017
- Full Text
- View/download PDF
5. A Factor Graph Description of Deep Temporal Active Inference.
- Author
-
de Vries, Bert and Friston, Karl J.
- Subjects
TEMPORAL integration ,FREE energy (Thermodynamics) ,COMPUTER simulation ,MESSAGE passing (Computer science) ,MULTISCALE modeling - Abstract
Active inference is a corollary of the Free Energy Principle that prescribes how self-organizing biological agents interact with their environment. The study of active inference processes relies on the definition of a generative probabilistic model and a description of how a free energy functional is minimized by neuronal message passing under thatmodel. This paper presents a tutorial introduction to specifying active inference processes by Forney-style factor graphs (FFG). The FFG framework provides both an insightful representation of the probabilistic model and a biologically plausible inference scheme that, in principle, can be automatically executed in a computer simulation. As an illustrative example, we present an FFG for a deep temporal active inference process. The graph clearly shows how policy selection by expected free energy minimization results from free energy minimization per se, in an appropriate generative policy model. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
6. An adaptive time-integration scheme for stiff chemistry based on Computational Singular Perturbation and Artificial Neural Networks
- Author
-
Malpica Galassi, Riccardo, Ciottoli, Pietro Paolo, Valorani, Mauro, Im, Hong G., Malpica Galassi, Riccardo, Ciottoli, Pietro Paolo, Valorani, Mauro, and Im, Hong G.
- Abstract
We leverage the computational singular perturbation (CSP) theory to develop an adaptive time-integration scheme for stiff chemistry based on a local, projection-based, reduced order model (ROM) freed of the fast time-scales. Its construction is such that artificial neural networks (ANN) can be plugged-in as cheap surrogates of the local projection basis, which is a state function, to alleviate the computational cost, without sacrificing the geometrical and physical foundation of the method. In fact, the solver relies on the synthetic basis in place of the more expensive on-the-fly calculated basis, i.e. the eigenvectors of the Jacobian matrix of the chemical source term, to define the local slow invariant manifold (SIM) and the projection matrix, then integrates explicitly the projected, i.e. non-stiff, chemical source term. We explore the feasibility of the ANN-accelerated CSP solver by training a set of ANNs to predict the projection basis vectors given the local chemical composition in a hydrogen/air homogeneous reactor problem. To enhance the smoothness of the basis vectors and reduce the reconstruction error, we introduce a constrained Jacobian formulation which removes the state heterogeneity due to the presence of temperature along with chemical species, and takes the derivatives enforcing the absolute enthalpy conservation. The test problem highlights the robustness of this ANN approach, arising from the relatively low requirements on the basis accuracy with respect to the requested integration accuracy., SCOPUS: ar.j, info:eu-repo/semantics/published
- Published
- 2021
7. An adaptive time-integration scheme for stiff chemistry based on computational singular perturbation and artificial neural networks
- Author
-
Hong G. Im, Pietro Paolo Ciottoli, Mauro Valorani, and Riccardo Malpica Galassi
- Subjects
combustion ,multi-scale dynamical systems ,model reduction ,slow invariant manifold ,Autoignition ,Numerical Analysis ,Singular perturbation ,Physics and Astronomy (miscellaneous) ,Artificial neural network ,Basis (linear algebra) ,Applied Mathematics ,Solver ,Projection (linear algebra) ,Computer Science Applications ,Computational Mathematics ,symbols.namesake ,Robustness (computer science) ,Modeling and Simulation ,Jacobian matrix and determinant ,symbols ,Algorithm ,Eigenvalues and eigenvectors - Abstract
We leverage the computational singular perturbation (CSP) theory to develop an adaptive time-integration scheme for stiff chemistry based on a local, projection-based, reduced order model (ROM) freed of the fast time-scales. Its construction is such that artificial neural networks (ANN) can be plugged-in as cheap surrogates of the local projection basis, which is a state function, to alleviate the computational cost, without sacrificing the geometrical and physical foundation of the method. In fact, the solver relies on the synthetic basis in place of the more expensive on-the-fly calculated basis, i.e. the eigenvectors of the Jacobian matrix of the chemical source term, to define the local slow invariant manifold (SIM) and the projection matrix, then integrates explicitly the projected, i.e., non-stiff, chemical source term. We explore the feasibility of the ANN-accelerated CSP solver by training a set of ANNs to predict the projection basis vectors given the local chemical composition in a hydrogen/air homogeneous reactor problem. To enhance the smoothness of the basis vectors and reduce the reconstruction error, we introduce a constrained Jacobian formulation which removes the state heterogeneity due to the presence of temperature along with chemical species, and takes the derivatives enforcing the absolute enthalpy conservation. The test problem highlights the robustness of this ANN approach, arising from the relatively low requirements on the basis accuracy with respect to the requested integration accuracy.
- Published
- 2022
- Full Text
- View/download PDF
8. Enhancements of the G-Scheme Framework
- Author
-
Samuel Paolucci, Temistocle Grenga, Emanuele Martelli, Mauro Valorani, Riccardo Malpica Galassi, Pietro Paolo Ciottoli, Valorani, Mauro, Ciottoli, Pietro Paolo, Malpica Galassi, Riccardo, Paolucci, Samuel, Grenga, Temistocle, and Martelli, Emanuele
- Subjects
Scheme (programming language) ,Computer science ,General Chemical Engineering ,General Physics and Astronomy ,02 engineering and technology ,Reuse ,Stiff solvers ,01 natural sciences ,010305 fluids & plasmas ,Reduction (complexity) ,020401 chemical engineering ,chemical kinetics ,0103 physical sciences ,Overall performance ,0204 chemical engineering ,Physical and Theoretical Chemistry ,computer.programming_language ,Basis (linear algebra) ,Solver ,autoignition ,Identification (information) ,multi-scale dynamical systems ,explicit solvers ,Algorithm ,computer ,Subspace topology - Abstract
The G-Scheme is a well established framework for multi-scale adaptive model reduction, whose effectiveness was demonstrated with reference to a number of test models, together with an identification of the critical areas that were in need of further theoretical and computational refinement. In this communication, we report on how we enhanced the solver performance. Two new features involving (i) the criteria to identify the fast and slow subspace dimensions, and (ii) a criterion to decide if and when the reuse of the CSP Basis is feasible without deteriorating the overall performance of the solver, have been proved able to increase significantly the computational efficiency of the solver without sacrificing its accuracy.
- Published
- 2018
- Full Text
- View/download PDF
9. An adaptive time-integration scheme for stiff chemistry based on computational singular perturbation and artificial neural networks.
- Author
-
Malpica Galassi, Riccardo, Ciottoli, Pietro Paolo, Valorani, Mauro, and Im, Hong G.
- Subjects
- *
TIME integration scheme , *ARTIFICIAL neural networks , *SINGULAR perturbations , *COMPUTATIONAL chemistry , *INVARIANT manifolds - Abstract
We leverage the computational singular perturbation (CSP) theory to develop an adaptive time-integration scheme for stiff chemistry based on a local, projection-based, reduced order model (ROM) freed of the fast time-scales. Its construction is such that artificial neural networks (ANN) can be plugged-in as cheap surrogates of the local projection basis, which is a state function, to alleviate the computational cost, without sacrificing the geometrical and physical foundation of the method. In fact, the solver relies on the synthetic basis in place of the more expensive on-the-fly calculated basis, i.e. the eigenvectors of the Jacobian matrix of the chemical source term, to define the local slow invariant manifold (SIM) and the projection matrix, then integrates explicitly the projected, i.e., non-stiff, chemical source term. We explore the feasibility of the ANN-accelerated CSP solver by training a set of ANNs to predict the projection basis vectors given the local chemical composition in a hydrogen/air homogeneous reactor problem. To enhance the smoothness of the basis vectors and reduce the reconstruction error, we introduce a constrained Jacobian formulation which removes the state heterogeneity due to the presence of temperature along with chemical species, and takes the derivatives enforcing the absolute enthalpy conservation. The test problem highlights the robustness of this ANN approach, arising from the relatively low requirements on the basis accuracy with respect to the requested integration accuracy. • Stiffness in kinetics ODE can be removed by projecting out the fast timescales. • The CSP solver explicitly integrates the local non-stiff (slow) reduced order model. • The slow system is evolved with a pace larger than that provided by implicit solvers. • ANNs are employed to provide a surrogate model for the projection basis. • The integration scheme is robust to the basis reconstruction errors. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
10. Glycolysis in saccharomyces cerevisiae: Algorithmic exploration of robustness and origin of oscillations.
- Author
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Kourdis, Panayotis D. and Goussis, Dimitris A.
- Subjects
- *
GLYCOLYSIS , *SACCHAROMYCES cerevisiae , *ROBUST control , *OSCILLATIONS , *DYNAMICAL systems , *INVARIANT manifolds - Abstract
Abstract: The glycolysis pathway in saccharomyces cerevisiae is considered, modeled by a dynamical system possessing a normally hyperbolic, exponentially attractive invariant manifold, where it exhibits limit cycle behavior. The fast dissipative action simplifies considerably the exploration of the system’s robustness, since its dynamical properties are mainly determined by the slow dynamics characterizing the motion along the limit cycle on the slow manifold. This manifold expresses a number of equilibrations among components of the cellular mechanism that have a non-negligible projection in the fast subspace, while the motion along the slow manifold is due to components that have a non-negligible projection in the slow subspace. The characteristic time scale of the limit cycle can be directly altered by perturbing components whose projection in the slow subspace contributes to its generation. The same effect can be obtained indirectly by perturbing components whose projection in the fast subspace participates in the generated equilibrations, since the slow manifold will thus be displaced and the slow dynamics must adjust. Along the limit cycle, the characteristic time scale exhibits successively a dissipative and an explosive nature (leading towards or away from a fixed point, respectively). Depending on their individual contribution to the dissipative or explosive nature of the characteristic time scale, the components of the cellular mechanism can be classified as either dissipative or explosive ones. Since dissipative/explosive components tend to diminish/intensify the oscillatory behavior, one would expect that strengthening a dissipative/explosive component will diminish/intensify the oscillations. However, it is shown that strengthening dissipative (explosive) components might lead the system to amplified oscillations (fixed point). By employing the Computational Singular Perturbation method, it is demonstrated that such a behavior is due to the constraints imposed by the slow manifold. [Copyright &y& Elsevier]
- Published
- 2013
- Full Text
- View/download PDF
11. A factor graph description of deep temporal active inference
- Author
-
de Vries, A., Friston, K.J., de Vries, A., and Friston, K.J.
- Abstract
Active inference is a corollary of the Free Energy Principle that prescribes how self-organizing biological agents interact with their environment. The study of active inference processes relies on the definition of a generative probabilistic model and a description of how a free energy functional is minimized by neuronal message passing under that model. This paper presents a tutorial introduction to specifying active inference processes by Forney-style factor graphs (FFG). The FFG framework provides both an insightful representation of the probabilistic model and a biologically plausible inference scheme that, in principle, can be automatically executed in a computer simulation. As an illustrative example, we present an FFG for a deep temporal active inference process. The graph clearly shows how policy selection by expected free energy minimization results from free energy minimization per se, in an appropriate generative policy model.
- Published
- 2017
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