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The Rosa L. is one of the widely grown plants in the world and its flowers and fruits has been used in different parts of the world for centuries. Wild grown Rosa plants is one of the most important element of the natural landscape and used as rootstock for roses for centuries as well. In this study the main flower, shrub and fruit characteristics of a large number of Rosa canina L. and Rosa dumalis Bechst. genotypes naturally found in Ardahan province of Turkey has been studied. All plants found very health conditions and indicated their strong defense mechanism of the genera to harsh abiotic and biotic conditions. The majority of genotypes had attractive flowers. The genotypes exhibited fruit mass between 2.81 g to 4.60 g. SSC (soluble solid content), vitamin C, total phenolic, total flavonoid, total carotenoid, and total anthocyanin content of the genotypes ranged from 15.8–20.6%, 502–714 mg per 100 g FW (fresh weight), 405–507 mg gallic acid equivalent per 100 g FW, 1.02–2.00 mg per g FW, 8.40–13.30 mg per g FW and 4.35–6.98 mg cyanidin-3-glucoside equivalent per liter, respectively. Antioxidant activity was determined between 22.3–30.9 mg ascorbic acid equivalent per g fresh weight. Chlorogenic acid was the major phenolic acids in fruits of Rosa ecotypes. Our results indicated promising perspectives for usage of R. canina and R. dumalis fresh fruits studied with considerable levels of bioactive compounds.

Atmospheric nucleation from precursor gases is a significant source of cloud condensation nuclei in the troposphere and thus can affect the Earth's radiative balance. Sulfuric acid, ammonia, and amines have been identified as key nucleation precursors in the atmosphere. Studies have also shown that atmospheric ions can react with sulfuric acid to form stable clusters in a process referred to as ion-induced nucleation (IIN). IIN follows similar reaction pathways as chemical ionization, which is used to detect and measure nucleation precursors via atmospheric pressure chemical ionization mass spectrometers. The rate at which ions form clusters depends on the ion-molecule rate constant. However, the rate constant varies based on the ion composition, which is often not known in the atmosphere. Previous studies have examined ion-molecule rate constants for sulfuric acid and nitrate ions but not for other atmospherically relevant ions like acetate. We report the relative rate constants of ion- molecule reactions between nitrate and acetate ions reacting with sulfuric acid. The ion- molecule rate constant for acetate and sulfuric acid is estimated to be a factor of 1.9-2.4 times higher than that of the known rate constant for nitrate and sulfuric acid. Using quantum chemistry, we find that acetate has a higher dipole moment and polarizability than nitrate. This may contribute to an increase in the collision cross-sectional area between acetate and sulfuric acid and lead to a greater reaction rate constant than nitrate. The ion- molecule rate constant for acetate with sulfuric acid will help quantify the contribution of acetate ions to atmospheric ion-induced new particle formation.

Background Weaning is a critical phase in the pigs’ life and gut health might be compromised. Gluconic acid was shown to be poorly absorbed but readily fermented to butyrate in the gut which in turn can improve gut function. Hence, a total of 144 weaning pigs were fed the experimental diets for 42 days. Three treatments were replicated in 8 pens with 6 piglets each: control; low dietary dose of gluconic acid, 9 g/kg; and high dietary dose of gluconic acid, 18 g/kg. After 21 days, one piglet from each pen was sampled for blood haematology and biochemistry, fore- and hindgut digesta characteristics and microbiota, and distal small intestinal histo-morphological indices and gene expression. Results Feeding gluconic acid enhanced performance in period d 0–14 post-weaning, in particular feed intake was increased (P = 0.028), though the high dose did not show benefits over the low dose. Regarding d 0–42, feed intake was elevated (P = 0.026). At d 21, piglets fed 18 g/kg gluconic acid showed a trend for lower number of total white blood cells (P = 0.060), caused by particularly lower numbers of lymphocytes as compared to control (P = 0.028). Highly reduced plasma urea was found for groups fed gluconic acid, it amounted to 2.6 and 2.6 mmol/L for the 9 and 18 g/kg level, respectively, as compared to 3.8 mmol/L in control (P = 0.003). Feeding gluconic acid promoted the relative abundance of lactic-acid-producing and acid-utilizing bacteria. In distal small intestine, Lactobacillus amylovorus increased substantially from 11.3 to 82.6% for control and gluconic acid 18 g/kg, respectively (P Faecalibacterium prausnitzii (P > 0.05) and Megasphaera elsdenii (P P = 0.046). Elevated mRNA anti-inflammatory cytokine and survival signalling levels in distal small intestinal mucosa were found by feeding gluconic acid which might be mediated by butyrate. Conclusions Gluconic acid may have potential to alleviate the postweaning growth-check in pigs by altering microbiota composition and fermentation in the gut.

Bipolar membrane electrodialysis (BMED) is a new membrane separation technology composed of electrodialysis (ED) through a bipolar membrane (BPM). Under the action of an electric field, H2O can be dissociated to H+ and OH-, and the anions and cations in the solution can be recovered as acids and bases, respectively, without adding chemical reagents, which reduces the application cost and carbon footprint, and leads to simple operation and high efficiency. Its application is becoming more widespread and promising, and it has become a research hotspot. This review mainly introduces the application of BMED to recovering salts in the form of acids and bases, CO2 capture, ammonia nitrogen recovery, and ion removal and recovery from wastewater. Finally, BMED is summarized, and future prospects are discussed. ispartof: MEMBRANES vol:12 issue:9 ispartof: location:Switzerland status: published

One of the major bottlenecks in lactic acid production using microbial fermentation is the detrimental influence lactic acid accumulation poses on the lactic acid producing cells. The accumulation of lactic acid results in many negative effects on the cell such as intracellular acidification, anion accumulation, membrane perturbation, disturbed amino acid trafficking, increased turgor pressure, ATP depletion, ROS accumulation, metabolic dysregulation and metal chelation. In this review, the manner in which Saccharomyces cerevisiae deals with these issues will be discussed extensively not only for lactic acid as a singular stress factor but also in combination with other stresses. In addition, different methods to improve lactic acid tolerance in S. cerevisiae using targeted and non-targeted engineering methods will be discussed. ispartof: MICROBIAL CELL vol:8 issue:6 pages:111-130 ispartof: location:Austria status: published

This study presents a sustainable approach for metal extraction from a range of secondary resources. Organic acids analogue to those commonly produced by heterotrophic microbes are applied via a two-step heterotrophic bioleaching approach. New insights into leaching mechanisms are developed and the potential use of the leaching residues as cementitious component is evaluated. Tested materials include a jarosite sludge from Zn refining, four ferrous metallurgy residue sludges and two dry automotive recycling shredder residues. Screening experiments tested three organic acids (i.e. citric, gluconic, oxalic acid) and their combinations. Four physicochemical factors were varied, i.e. the solid/liquid ratio between 5 and 15%, total organic acid concentration between 20 and 200 mM, leaching times of 2 to 4 h and horizontal stirring reactor mixing rate. The highest extraction capacity was achieved for a Cr/Ni rich sludges from steel treatment with up to 96% Ni and 91% Cr extraction at a 5% S/L and a mixture of 100 mM citric and 100 mM oxalic acid. Further scale-up kinetic studies on this Cr/Ni sludge validated the optimal leaching conditions. Modelling of kinetic leaching data indicated pore diffusion rate as a bottleneck of the overall leaching process. Screening tests of the leached residue indicated potential use as sulfate-rich addition to cement, or as part of low-performance binders for large scale civil works.

Intensified solvometallurgical process by combining solvoleaching and solvent extraction to recover cobalt from lithium cobalt oxide, in presence of current collectors aluminium and copper.

The wild asparagus Asparagus acutifolius L. is common in the Mediterranean Basin. Wild asparagus spears are an important food source within their native range, and can be used as a sustainable nutrition source. In addition, interest has risen in wild relative species of Asparagus as a source of genetic improvement in Asparagus officinalis L. In this study, the quality traits (spear colour, total soluble solid content, dry matter content and chlorophyll and sugar fractions) and health-related compounds (total phenolics and antioxidant capacity) of fresh spears of wild and cultivated asparagus grown in Turkey were compared using the same three harvest periods for two consecutive years. The results of this study indicated that spears of wild asparagus contained a higher level of greenness (–a*), hue angle, total soluble solid, dry matter, chlorophyll, sugars, total phenolic content and antioxidant activity, compared to cultivated asparagus. Although there was no significant difference in the total soluble solid, glucose, sucrose and antioxidant activity in the contents of the spears of both species throughout the season, the colour, dry matter, chlorophyll, fructose, total sugar and total phenolic content were subject to seasonal variations. Colour, chlorophyll and total phenolic content showed some minor fluctuations over the course of the season, but the patterns of fructose and total sugar differed, which tended to increase throughout the harvest season. The present work suggests greater quality traits and biochemical compounds of the spears of A. acutifolius compared with those of commonly cultivated species.

Studies with Saccharomyces cerevisiae indicated that non-physiologically high levels of acetic acid promote cellular acidification, chronological aging, and programmed cell death. In the current study, we compared the cellular lipid composition, acetic acid uptake, intracellular pH, growth, and chronological lifespan of wild-type cells and mutants lacking the protein kinase Sch9 and/or a functional V-ATPase when grown in medium supplemented with different acetic acid concentrations. Our data show that strains lacking the V-ATPase are especially more susceptible to growth arrest in the presence of high acetic acid concentrations, which is due to a slower adaptation to the acid stress. These V-ATPase mutants also displayed changes in lipid homeostasis, including alterations in their membrane lipid composition that influences the acetic acid diffusion rate and changes in sphingolipid metabolism and the sphingolipid rheostat, which is known to regulate stress tolerance and longevity of yeast cells. However, we provide evidence that the supplementation of 20 mM acetic acid has a cytoprotective and presumable hormesis effect that extends the longevity of all strains tested, including the V-ATPase compromised mutants. We also demonstrate that the long-lived sch9Δ strain itself secretes significant amounts of acetic acid during stationary phase, which in addition to its enhanced accumulation of storage lipids may underlie its increased lifespan. ispartof: MICROORGANISMS vol:9 issue:9 ispartof: location:Switzerland status: published

Non-traditional stable isotope systems are increasingly used to study micronutrient cycling and acquisition in terrestrial ecosystems. We previously proposed for zinc (Zn) a conceptual model linking observed isotope signatures and fractionations to biogeochemical processes occurring in the rice soil environment and we suggested that 2’deoxymugineic acid (DMA) could play an important role for rice during the acquisition of Zn when grown under Zn limiting conditions. This proposition was sustained by the extent and direction of isotope fractionation observed during the complexation of Zn with DMA synthesised in our laboratory. Here we report a new set of experimental data from field and laboratory studies designed to further elucidate the mechanisms controlling Zn isotope fractionation in the rice rhizosphere and the role of DMA. First, we present acidity (pKa) and complexation (logK) constants for DMA with H+ and Zn2+, respectively, using synthetic 2’deoxymugineic acid and show that they are significantly different from previously published data using isolates from plants. Our new set of thermodynamic data allows for a more accurate calculation of the formation of ZnDMA complexes over pH ranges typically found in the rhizosphere of flooded lowland rice soils and in rice plant compartments (xylem, phloem). We show that at pH > 6.5, Zn is fully complexed by DMA and at pH 0) detected during adsorption of Zn on goethite in alkaline solutions or between root and soil solution in rice grown in alkaline soils. We show that removal of different Zn species from solution and changes in the Zn coordination control extent and direction of isotope fraction during adsorption. Using the new set of results and combining it with recent findings from the literature, we present a refined conceptual model linking biogeochemical processes to Zn isotope fractionation in the rice soil system. Our results confirm the importance of root induced chemical changes in the rhizosphere of rice growing in soils with low Zn availability, demonstrate the unique ability of isotope signatures to deconvolve geochemical processes and conditions in the plant-soil environment and support the hypothesis of an important role of DMA in Zn acquisition under Zn limiting conditions.

Glutaric aciduria type I (GA-I, OMIM # 231670) is an inborn error of metabolism caused by a deficiency of glutaryl-CoA dehydrogenase (GCDH). Patients develop acute encephalopathic crises (AEC) with striatal injury most often triggered by catabolic stress. The pathophysiology of GA-I, particularly in brain, is still not fully understood. We generated the first knock-in rat model for GA-I by introduction of the mutation p.R411W, the rat sequence homologue of the most common Caucasian mutation p.R402W, into the Gcdh gene of Sprague Dawley rats by CRISPR/CAS9 technology. Homozygous Gcdhki/ki rats revealed a high excretor phenotype, but did not present any signs of AEC under normal diet (ND). Exposure to a high lysine diet (HLD, 4.7%) after weaning resulted in clinical and biochemical signs of AEC. A significant increase of plasmatic ammonium concentrations was found in Gcdhki/ki rats under HLD, accompanied by a decrease of urea concentrations and a concomitant increase of arginine excretion. This might indicate an inhibition of the urea cycle. Gcdhki/ki rats exposed to HLD showed highly diminished food intake resulting in severely decreased weight gain and moderate reduction of body mass index (BMI). This constellation suggests a loss of appetite. Under HLD, pipecolic acid increased significantly in cerebral and extra-cerebral liquids and tissues of Gcdhki/ki rats, but not in WT rats. It seems that Gcdhki/ki rats under HLD activate the pipecolate pathway for lysine degradation. Gcdhki/ki rat brains revealed depletion of free carnitine, microglial activation, astroglyosis, astrocytic death by apoptosis, increased vacuole numbers, impaired OXPHOS activities and neuronal damage. Under HLD, Gcdhki/ki rats showed imbalance of intra-and extracellular creatine concentrations and indirect signs of an intracerebral ammonium accumulation. We successfully created the first rat model for GA-I. Characterization of this Gcdhki/ki strain confirmed that it is a suitable model not only for the study of pathophysiological processes, but also for the development of new ther-apeutic interventions. We further brought up interesting new insights into the pathophysiology of GA-I in brain and periphery., (c) 2021 The Authors. Published by Elsevier Inc. This is an open access article under the CC BY-NC-ND license (http:// creativecommons.org/licenses/by-nc-nd/4.0/).

This study aimed to evaluate the influence of sourdough fermentation on the estimated glycemic index (eGI), in vitro starch digestibility, and textural and sensory properties of eight experimentally prepared sourdough breads. Wheat and whole wheat flour bread samples were produced under different fermentation conditions (25 °C and 30 °C) and fermentation methods (type-1 and type-2). In type-1 fermentation, sourdough was obtained via spontaneous fermentation. Indigenous strains (Lactobacillus brevis ELB99, Lactiplantibacillus plantarum ELB75, and Saccharomyces cerevisiae TGM55) were used for type-2 fermentation. Fermentation type and temperature significantly affected eGI, the hydrolysis index (HI), the starch fraction, and the textural properties of the samples (p &lt, 0.05). The resistant starch (RS) content increased after fermentation, while rapidly digestible starch (RDS), HI, and eGI decreased. RS values were significantly higher in type-2 than in type-1 at the same temperature for both flour types (p &lt, 0.05). At 25 °C, RS values were higher in both fermentation types. In the white flour samples, eGI values were in the range of 60.8–78.94 and 62.10–78.94 for type-1 and type-2, respectively. The effect of fermentation type on eGI was insignificant (p &lt, 0.05). In the whole flour samples, fermentation type and temperature significantly affected eGI (p &lt, 0.05). The greatest eGI decreases were in whole wheat sourdough bread at 30 °C using type-2 (29.74%). The 30 °C and type-2 samples showed lower hardness and higher specific volume. This study suggests that fermentation type and temperature could affect the eGI and the textural and sensory properties of sourdough bread, and these factors should be considered during bread production. The findings also support the consumption of wheat and whole wheat breads produced by type-2 fermentation due to higher RS and slowly digestible starch (SDS) and lower RDS and eGI values.

Ficus carica (common fig) is a tree native to southwest Asia and the eastern Mediterranean and is among the first plants cultivated by humans. Fig harvest is of worldwide importance for their dry and fresh consumption. The fruit, roots, and leaves of figs are used as anti-inflammatory and antispasmodic drugs for treating various disorders such as gastrointestinal (colic, dyspepsia, anorexia, and diarrhea), respiratory (a sore throat, cough, and bronchial problems) and cardiovascular disorders in traditional medicine. Previous studies have reported the use of latex, leaves, fruit, and root of the fig in the literature. However, so far, fig seeds (Ficus carica) have not been decomposed and analyzed for their oil content. High-Performance Chromatography Fluorescence Detector (HPLC-FLD) method was used to measure the level of vitamin E tocopherol, and the fatty acid content was analyzed with Gas Chromatography with Flame Ionization Detector (GC-FID) method. The results showed that Ficus carica seed oil is a rich source of linolenic acid (C18:3), linoleic acid (C18:2) and oleic acid (C18:1). Besides, it contains 314.61 +/- 51.53 mg/100 g gamma tocopherol. Thus, Ficus carica seed oil is of importance in the health sciences.

This study investigated the spoilage potential of yeast strains Kluyveromyces marxianus (Km1, Km2 and Km3), Pichia kudriavzevii Pk1 and Torulaspora delbrueckii Td1 grown in skyr in cold storage. Yeast strains were isolated from skyr and identified by sequencing of the 26S rRNA gene. K. marxianus yeasts were grown in skyr to high numbers, generating large amounts of volatile organic compounds (VOC) associated with off-flavours, among them were alcohols (3-methyl-1-butanol, 2-methyl-1-propanol and 1-hexanol), esters (ethyl acetate and 3-methylbutyl acetate) and aldehydes (hexanal, methylbutanal and methylpropanal). Growth of P. kudriavzevii Pk1 led to moderate increases in several alcohols and esters (mostly, 3-methyl-1-butanol and ethyl acetate), whereas only minor shifts in VOCs were associated with T. delbrueckii Td2. The levels of the key aroma compounds, diacetyl and acetoin, were significantly decreased by all K. marxianus strains and P. kudriavzevii Pk1. In contrast to the other yeast species, K. marxianus was able to utilize lactose, producing ethanol and carbon dioxide. Based on the overall results, K. marxianus was characterised by the highest spoilage potential. The study revealed the differences between the yeast species in fermentative and spoilage activities, and clarified the role of yeast metabolites for off-flavour formation and quality defects in skyr during cold storage.

Sorrel (Rumex acetosaL.) is a perennial, dioecious herb occupying a variety of habitats. Sorrel has been utilized as a wild gathered plant for thousands of years and as a cultivated plant for centuries. Primarily roots but also other tissues have been used in folk remedies since ancient times. In recent investigations, different phytochemical and pharmacological activities ofRumexhave been analyzed, and many bioactive compounds have been detected. Sorrel is also a tasty plant and its leaves are a good source of macronutrients and micronutrients. However, the presence of high levels of oxalic acid reduces the bioavailability of some minerals, especially calcium, when using uncooked plant parts. Further investigations on different sorrel compounds are needed to show their true effect. It is beneficial that sorrel is easily propagated and there are no serious insect or disease problems. A few types ofR. acetosaseeds are presently available commercially, including wild types and a few cultivars.

Increasing popularity of sour beer urges the development of novel solutions for controlled fermentations both for fast acidification and consistency in product flavor and quality. One possible approach is the use of Saccharomyces cerevisiae in co-fermentation with Lactobacillus species, which produce lactic acid as a major end-product of carbohydrate catabolism. The ability of lactobacilli to ferment beer is determined by their capacity to sustain brewing-related stresses, including hop iso-α acids, low pH and ethanol. Here, we evaluated the tolerance of Lactobacillus brevis BSO464 and Lactobacillus buchneri CD034 to beer conditions and different fermentation strategies as well as their use in the brewing process in mixed fermentation with a brewer's yeast, S. cerevisiae US-05. Results were compared with those obtained with a commercial Lactobacillus plantarum (WildBrewTM Sour Pitch), a strain commonly used for kettle souring. In pure cultures, the three strains showed varying susceptibility to stresses, with L. brevis being the most resistant and L. plantarum displaying the lowest stress tolerance. When in co-fermentation with S. cerevisiae, both L. plantarum and L. brevis were able to generate sour beer in as little as 21 days, and their presence positively influenced the composition of flavor-active compounds. Both sour beers were sensorially different from each other and from a reference beer fermented by S. cerevisiae alone. While the beer produced with L. plantarum had an increased intensity in fruity odor and dried fruit odor, the L. brevis beer had a higher total flavor intensity, acidic taste and astringency. Remarkably, the beer generated with L. brevis was perceived as comparable to a commercial sour beer in multiple sensory attributes. Taken together, this study demonstrates the feasibility of using L. brevis BSO464 and L. plantarum in co-fermentation with S. cerevisiae for controlled sour beer production with shortened production time. ispartof: Frontiers In Microbiology vol:11 ispartof: location:Switzerland status: Published online

Recycling of cobalt from end-of-life lithium-ion batteries (LIBs) is gaining interest because they are increasingly used in commercial applications such as electrical vehicles. A common LIB cathode material is lithium cobalt oxide (LiCoO2). Besides the cathode, LIBs contain other components, such as metallic aluminium and copper as current collectors, which are often separated at initial hydrometallurgical recycling stages. Leaching of cobalt from LiCoO2 is mainly driven by reducing cobalt(III) in LiCoO2 to cobalt(II) via adding reducing agents. In this work, a green, cheap and safe approach is proposed by using a choline chloride–citric acid deep-eutectic solvent (DES) as lixiviant. Aluminium and copper were evaluated as reducing agents for cobalt(III). After optimisation, lithium and cobalt were quantitatively leached from LiCoO2 in the presence of aluminium and copper. Copper was the most effective reducing agent for cobalt(III), so that no additional reducing agents or a pre-separation step were required. A speciation study of the pregnant leach solution (PLS) confirmed the dominance of chloro complexes. DES leaching was compared with conventional hydrochloric acid leaching, whereby the DES avoided the formation of toxic chlorine gas. Finally, the DES PLS was used as the more polar phase in a non-aqueous solvent extraction process. This process consisted of a copper(I/II) extraction step with the extractant LIX 984, followed by selective extraction of cobalt(II) with the extractant Aliquat 336. Both metals were completely stripped from the loaded organic phases by oxalic acid. The total recovery yield of cobalt was 81%, as a 99.9% pure oxalate precipitate.

In this study, the effects of β-glucan from two different cereal sources (barley and oat), as prebiotics, on the viability of Bifidobacterium animalis subsp. lactis strain Bb-12 in probiotic set yoghurt and the properties of yoghurt were studied. Physicochemical properties of yoghurt samples (including pH, titratable acidity (La%), whey separation, organic acids such as lactic and acetic acid, colour (L*, a*, b*, ΔE, C*, h*) and sensorial properties) were significantly affected by the addition of barley- and oat-based β-glucan. As a result, the survival of B. animalis subsp. lactis was maintained within probiotic and therapeutic levels (>7 log cfu/g), due to the possible prebiotic effect of barley- and oat-based β-glucan, after 28 days of cold storage of the probiotic yoghurt. In conclusion, β-glucan can be used for the development of cereal-based functional dairy products with sufficient beneficial effects, probiotic viability and acceptable sensory characteristics.

The azoles (represented by penconazole, cyproconazole, and tebuconazole in this study) are frequently used agrochemicals to protect various crops against mildew and fungi. They are considered as endocrine disruptors, because they block the biosynthesis (on the level of enzymes inhibition) of biochemicals with steroid structure. Besides targeted impacts, they can partly get into the soil with the rainfall or litter fall and influence/block the biosynthesis of sterols of non-target organisms. In this sense, the risk of disruption of rhizosphere plant-microbial symbiosis and dynamic processes in the soil solution by azoles is of high importance to be evaluated. We have developed an analytical methodology for determination of penconazole, cyproconazole, and tebuconazole in soil solution using capillary electrophoresis with a photodiode array detector at UV-214 nm and acidic electrolyte solution (pH 1.48). The results were also compared with mass spectrometric measurements using mu-TOF mass spectrometry. There approx. 90% of present azoles were bound in the soil solution matrix. The detection limit for these azoles is about 10(-7) mol dm(-3). Because of very low pK(a) of azoles, we have to consider deprotonation of azoles and consequently the high affinity to create complexes with cations. The majority of present azoles in soil solution might form neutral adducts with mono-cations, making them invisible in electrospray mass spectra. [GRAPHICS] .

In developing apple fruit, metabolic compartmentation is poorly understood due to the lack of experimental data. Distinguishing subcellular compartments in fruit using non-aqueous fractionation has been technically difficult due to the excess amount of sugars present in the different subcellular compartments limiting the resolution of the technique. The work described in this study represents the first attempt to apply non-aqueous fractionation to developing apple fruit, covering the major events occurring during fruit development (cell division, cell expansion, and maturation). Here we describe the non-aqueous fractionation method to study the subcellular compartmentation of metabolites during apple fruit development considering three main cellular compartments (cytosol, plastids, and vacuole). Evidence is presented that most of the sugars and organic acids were predominantly located in the vacuole, whereas some of the amino acids were distributed between the cytosol and the vacuole. The results showed a shift in the plastid marker from the lightest fractions in the early growth stage to the dense fractions in the later fruit growth stages. This implies that the accumulation of starch content with progressing fruit development substantially influenced the distribution of plastidial fragments within the non-aqueous density gradient applied. Results from this study provide substantial baseline information on assessing the subcellular compartmentation of metabolites in apple fruit in general and during fruit growth in particular. ispartof: HORTICULTURE RESEARCH vol:6 ispartof: location:England status: published

Research Highlights: Plant cover drives the activity of the microbial decomposer community and affects carbon (C) sequestration in the soil. Despite the relationship between microbial activity and C sequestration in the soil, potential inhibition of soil microbial activity by plant cover has received little attention to date. Background and Objectives: Differences in soil microbial activity between two paired stands on soil at a very early stage of formation and a common story until afforestation, can be traced back to the plant cover. We hypothesized that in a black locust (Robinia pseudoacacia L.) stand the high-quality leaf litter of the tree, and that of the blackberry (Rubus fruticosus L.) understory had an inhibitory effect on soil microbial community resulting in lower mineralization of soil organic matter compared to the paired black pine (Pinus nigra Arn.) stand. Materials and Methods: We estimated potential mineralization rates (MR), microbial (MB), and active fungal biomass (AFB) of newly-shed litter, forest floor, and mineral soil. We tested the effects of litters&rsquo, water extracts on soil MR, MB, AFB and its catabolic response profile (CRP). Results: Newly-shed litter of black locust had higher MR than that of blackberry and black pine, MR, MB, and AFB were higher in forest floor and in mineral soil under black pine than under black locust. Water extracts of black locust and blackberry litter had a negative effect on the amount, activity of microorganisms, and CRP. Conclusions: The results demonstrate the potential for black locust and blackberry litter to have a marked inhibitory effect on decomposer microorganisms that, in turn, reduce organic matter mineralization with possible consequences at the ecosystem level, by increasing C sequestration in mineral soil.

International audience; Numerous studies have reported that the glycaemic response to starch-rich meals can be reduced by 20-50% with acidic drinks or foods. A number of candidate explanations have been put forward, but this phenomenon still remains vaguely understood. This study intends to demonstrate the remarkable effect of acid inhibition of salivary -amylase during oro-gastric hydrolysis of starch, shedding light on this often overlooked mechanism. Oro-gastric digestions of bread, wheat and gluten-free pastas, combined with either water or lemon juice were performed using a dynamic in vitro system that reproduces gastric acidification kinetics observed in humans. In the presence of water, large proportions of starch (25-85%) and oligosaccharides (15-50%) were released from all foods within the first hour of gastric digestion (pH > 3.5). In the presence of lemon juice (pH < 3.5 at all time), starch release was about twice as low, and amylolysis into oligosaccharides was completely interrupted. Acid-inhibition of salivary -amylase may explain, at least in part, the reduction of the blood glucose response through acidification of starch-rich foods/meals. This offers new perspectives for the development of strategies to improve the glycaemic response elicited by starch-rich diets.

l-Malate is an important platform chemical that has extensive applications in the food, feed, and wine industries. Here, we synergistically engineered the carbon metabolism and redox metabolism in the cytosol and mitochondria of a previously engineered Aspergillus oryzae to further improve the l-malate titer and decrease the byproduct succinate concentration. First, the accumulation of the intermediate pyruvate was eliminated by overexpressing a pyruvate carboxylase from Rhizopus oryzae in the cytosol and mitochondria of A. oryzae, and consequently, the l-malate titer increased 7.5%. Then, malate synthesis via glyoxylate bypass in the mitochondria was enhanced, and citrate synthase in the oxidative TCA cycle was downregulated by RNAi, enhancing the l-malate titer by 10.7%. Next, the exchange of byproducts (succinate and fumarate) between the cytosol and mitochondria was regulated by the expression of a dicarboxylate carrier Sfc1p from Saccharomyces cerevisiae in the mitochondria, which increased l-malate titer 3.5% and decreased succinate concentration 36.8%. Finally, an NADH oxidase from Lactococcus lactis was overexpressed to decrease the NADH/NAD+ ratio, and the engineered A. oryzae strain produced 117.2 g/L l-malate and 3.8 g/L succinate, with an l-malate yield of 0.9 g/g corn starch and a productivity of 1.17 g/L/h. Our results showed that synergistic engineering of the carbon and redox metabolisms in the cytosol and mitochondria of A. oryzae effectively increased the l-malate titer, while simultaneously decreasing the concentration of the byproduct succinate. The strategies used in our work may be useful for the metabolic engineering of fungi to produce other industrially important chemicals.

Microbial life inhabiting subseafloor sediments plays an important role in Earth’s carbon cycle. However, the impact of geodynamic processes on the distributions and carbon-cycling activities of subseafloor life remains poorly constrained. We explore a submarine mud volcano of the Nankai accretionary complex by drilling down to 200 m below the summit. Stable isotopic compositions of water and carbon compounds, including clumped methane isotopologues, suggest that ~90% of methane is microbially produced at 16° to 30°C and 300 to 900 m below seafloor, corresponding to the basin bottom, where fluids in the accretionary prism are supplied via megasplay faults. Radiotracer experiments showed that relatively small microbial populations in deep mud volcano sediments (10 2 to 10 3 cells cm −3 ) include highly active hydrogenotrophic methanogens and acetogens. Our findings indicate that subduction-associated fluid migration has stimulated microbial activity in the mud reservoir and that mud volcanoes may contribute more substantially to the methane budget than previously estimated., Postprints der Universität Potsdam : Mathematisch-Naturwissenschaftliche Reihe, 802

The bacterial storage compound poly-β-hydroxybutyrate, a polymer of the short-chain fatty acid 3-hydroxybutyrate, has been reported to protect various aquatic animals from bacterial disease. In order to obtain a better mechanistic insight, we aimed to (1) investigate whether 3-hydroxybutyrate is released from poly-β-hydroxybutyrate within sterile brine shrimp larvae, (2) determine the impact of 3-hydroxybutyrate on the virulence of Vibrio campbellii to brine shrimp larvae and on its cell density in the shrimp, and (3) determine the impact of this compound on virulence factor production in the pathogen. We detected 3-hydroxybutyrate in poly-β-hydroxybutyrate-fed brine shrimp, resulting in 24 mM 3-hydroxybutyrate in the intestinal tract of shrimp reared in the presence of 1000 mg l−1 poly-β-hydroxybutyrate. We further demonstrate that this concentration of 3-hydroxybutyrate does not affect the growth of V. campbellii, whereas it decreases the production of different virulence factors, including hemolysin, phospholipase and protease activities, and swimming motility. We hypothesize that by affecting all these virulence factors at once, 3-hydroxybutyrate (and thus also poly-β-hydroxybutyrate) can exert a significant impact on the virulence of V. campbellii. This hypothesis was confirmed in a challenge test showing that 3-hydroxybutyrate protected gnotobiotic brine shrimp from pathogenic V. campbellii, without affecting the number of host-associated vibrios.

There is increasing appreciation of the role that vaginal microbiota play in health and disease throughout a woman’s lifespan. This has been driven partly by molecular techniques that enable detailed identification and characterisation of microbial community structures. However, these methods do not enable assessment of the biochemical and immunological interactions between host and vaginal microbiota involved in pathophysiology. This review examines our current knowledge of the relationships that exist between vaginal microbiota and the host at the level of the vaginal mucosal interface. We also consider methodological approaches to microbiomic, immunologic and metabolic profiling that permit assessment of these interactions. Integration of information derived from these platforms brings the potential for biomarker discovery, disease risk stratification and improved understanding of the mechanisms regulating vaginal microbial community dynamics in health and disease.

[ES] El impacto medioambiental ocasionado durante las últimas décadas por el sector de la construcción, ha fomentado su interés por el conocimiento y uso de los materiales reciclados. En el presente estudio se muestran las diferencias de comportamiento existentes entre un hormigón convencional y un hormigón reciclado (50% del árido grueso natural se ha sustituido por árido reciclado mixto) cuando estos son utilizados en el sector agroganadero. Este tipo de ambientes son muy exigentes con los materiales constructivos, ya que la presencia de ácidos orgánicos generados por los efluentes del material ensilado y las excreciones de los animales junto con la abrasión mecánica ejercida por la maquinaria y los propios animales, ocasionan un alto nivel de degradación. Empleando un equipo de ensayo de degradación acelerada implementado en la Universidad de Gante (Bélgica), se han sometido las probetas de hormigón a ciclos de degradación ácida en una mezcla de base acuosa donde se incorporan ácido láctico y ácido acético, con una concentración de 30g/l. Los resultados muestran como el hormigón reciclado presenta una mayor resistencia a los ataques ácidos y mecánicos que pueden darse en un ambiente ganadero, debido al efecto que ejerce el material cerámico sobre la red porosa del hormigón., Este artículo ha sido desarrollado gracias a la financiación del Ministerio de Economía y Competitividad a través del proyecto BIA2013-48876-C3-3-R, así como de la ayuda FPI BES-2011-047159 asociada al proyecto BIA2010-21194-C03-02. También a la financiación del Ministerio de Educación, Cultura y Deporte por la ayuda FPU AP2010- 0613. Finalmente, los autores agradecen la desinteresada participación de las empresas TEC-REC desde Madrid; ARD desde Amberes; y Bierzo Recicla desde Castilla y León.

[EN] The alcobaça mutation in the Penjar tomato (Solanum lycopersicum L.) variety alters the ripening process and confers a long shelf life (more than four months). Storage of Penjar tomatoes leads to a distinctive sensory profile valued by local consumers, who prefer aged tomatoes to fresh ones. To study chemical changes occurring during storage, we characterized the complete sugar-and-acid profile of 25 accessions at harvest and at 2 and 4 months after harvest. We found considerable variability in the sugar-and-acid profile within the Penjar variety, especially for fructose and glucose. Some accessions presented exceptionally high values for sugars, making them especially interesting for breeding programs. During postharvest, the concentration of glucose, fructose, and citric acid decreased, whereas the concentration of malic and glutamic acids increased. Data from this study offer novel insights into postharvest changes in tomato quality parameters and help elucidate the reasons for the appreciation of this variety by consumers.

Open access article de 14 p.; International audience; Microorganisms inhabiting fermenting fruit produce chemicals that elicit strong behavioral responses in flies. Depending on their ecological niche, individuals confer a positive or a negative valence to a chemical and, accordingly, they trigger either attractive or repulsive behaviors. We studied the case of bacterial short-chain fatty acids (SCFA) that trigger opposite behaviors in adult and larvae of Drosophila melanogaster. We determined that SCFA-attractive responses depend on two larval exclusive chemoreceptors, Or30a and Or94b. Of those SCFA, propionic acid improves larval survival in suboptimal rearing conditions and supports growth. Olfactory detection of propionic acid specifically is sufficient to trigger feeding behaviors, and this effect requires the correct activity of Or30a(+) and Or94b(+) olfactory sensory neurons. Additionally, we studied the case of the invasive pest Drosophila suzukii that lives on undamaged ripe fruit with less SCFA production. Contrary to D. melanogaster, D. suzukii larvae show reduced attraction towards propionic acid, which does not trigger feeding behavior in this invasive species. Our results demonstrate the relevance of propionic acid as an orexigenic signal in D. melanogaster larvae. Moreover, this study underlines that the changes on ecological niche are accompanied with alterations of olfactory preferences and vital olfactory driven behaviors.

A self-assembled nine-element optoelectronic tongue consisting of a positively charged water-soluble poly(para-phenyleneethynylene) and three metal ions (Fe2+, Co2+, and Cu2+) at three different pH values (7, 10, and 13) discriminates all of the 20natural amino acids in water. Unknown identification was not ideal. Addition of a highly positively charged green fluorescent protein in the presence of Fe2+, Co2+, and Cu2+ increased the unknown identification to above 86%. Linear discriminant analysis (LDA) orders the responses according to the amino acid type, that is, hydrophobic, polar, anionic, or cationic.

Despite current control measures, Salmonella in pigs remains a major public health concern. In this in vivo study, the effect of three intervention strategies on Salmonella Typhimurium transmission in pigs was evaluated. The first intervention was feed supplemented with coated calcium-butyrate (group A); the second comprised oral vaccination with a double-attenuated Salmonella Typhimurium strain (group B), and the third was acidification of drinking water with a mixture of organic acids (group C). After challenge at 8 weeks of age, animals were individually sampled for 6 weeks (blood once per week; faeces twice per week) and then were euthanased at 14 weeks of age. Post-mortem ileum, caecum, ileocaecal lymph nodes, and tonsils were sampled, along with ileal, caecal and rectal contents, and tested for the presence of Salmonella spp. Transmission was quantified by calculating an 'adjusted' reproduction ratio 'Ra' and its 95% confidence interval (CI). The proportion of pigs that excreted Salmonella spp. via the faeces was significantly higher in group C (58%, P0.0001) and the positive control group (41%, P=0.03), compared to group B (15%), and the proportion in group C was also significantly higher than in group A (23%, P=0.01). Group A had the lowest proportion of positive post-mortem samples (18%), followed by group B (31%), the positive control group (41%) and group C (64%) (P0.03). The highest transmission was seen in the positive control group and group C (Ra=+∞ with 95% CI [1.88; +∞]), followed by group B (Ra=2.61 [1.21; 9.45]) and A (Ra=1.76 [1.02; 9.01]). The results of this study suggest that vaccination and supplementation of the feed with coated calcium-butyrate limited Salmonella transmission in pigs and might be useful control measures.

International audience; Fleshy fruit acidity is an important component of fruit organoleptic quality and is mainly due to the presence of malic and citric acids, the main organic acids found in most ripe fruits. The accumulation of these two acids in fruit cells is the result of several interlinked processes that take place in different compartments of the cell and appear to be under the control of many factors. This review combines analyses of transcriptomic, metabolomic, and proteomic data, and fruit process-based simulation models of the accumulation of citric and malic acids, to further our understanding of the physiological mechanisms likely to control the accumulation of these two acids during fruit development. The effects of agro-environmental factors, such as the source:sink ratio, water supply, mineral nutrition, and temperature, on citric and malic acid accumulation in fruit cells have been reported in several agronomic studies. This review sheds light on the interactions between these factors and the metabolism and storage of organic acids in the cell.

International audience; Three commercial fungal chitosan-glucan complexes with different low molecular weights (CS1, CS2, CS3) were studied for antioxidant power determined by the ferric ion reducing antioxidant power (FRAP) method and antimicrobial potential evaluated against Listeria monocytogenes. The impact of the acid type (lactic and acetic) and concentration as well as the pH of film forming chitosan-glucan solutions were investigated. The quantitative evaluation of chitosan-glucan complexes was proposed using the degrees of deacetylation calculated from (i) elemental analysis of carbon and nitrogen and (ii) infra-red absorbance of the ratio amide I/hydroxyl bands. The amount of glucans in CS1, CS2 and CS3 is 6%, 10% and 5%, respectively. Whatever the pH, the reducing capacity of chitosans was higher using lactic acid than acetic acid. It depended on the molecular weight, the degree of deacetylation and the glucan percentage. As the pH increased, the antioxidant activity improved when higher amounts of glucans were present, for similar values of molecular weights and degrees of deacetylation. The chitosan anti-listerial activity was higher with chitosan lactate than with chitosan acetate. As the pH increased, the inhibition slightly felt. Usage of lactic acid in pH = 5 caused fully reduction with variants CS1 and CS3 in concentration of 0.5%. The inhibition was higher when pH decreased for chitosan containing the highest concentration of glucans. Complete reduction was observed in pH = 3 for all samples, except CS2 dissolved in acetic acid in amount of 0.5%. The chitosan with the highest glucan amount displayed the highest antioxidant properties and the lowest anti-listerial activity. (C) 2016 Elsevier Ltd. All rights reserved.

WOS:000367483000036; International audience; The development of a new test method for evaluating the resistance of manufactured cementitious products to biogenic acid attack, labeled BAC-Test for Biogenic Acid Concrete Test, was reported in Part I of this paper. The performance of the test in terms of sulfur-oxidizing bacteria selection and acid and sulfate production has been validated previously. In this second part, the representativeness of the degradation mechanisms of the cementitious materials is explored. Two segments of industrial pipes - ductile cast iron coated with cementitious linings (blast furnace slag cement (BFSC) and calcium aluminate cement (CAC) mortars) - were exposed to the test for 107 days. Then linings were analyzed by SEM coupled with EDS, EPMA, and XRD. Significant differences between BFSC and CAC linings were highlighted. Abundant cracking of the BFSC lining was observed, caused by precipitation of secondary ettringite, while no cracking was observed in the CAC lining. The CAC outer layer was composed mainly of AH(3) gel. The decalcification front was deeper in the BFSC matrix than in the CAC one. (C) 2015 Elsevier Ltd. All rights reserved.

BACKGROUNDThe commercial potato cultivars are diverse not only in their physical characteristics but also in their nutritional compositions and their content of functional compounds (resistant starch, total phenolic content and antioxidant activity), but there is little information about these differences. The aim of this study was to characterise the nutritional value (focusing on carbohydrates and functional compounds) and instrumental parameters of eight potato cultivars consumed in Spain and to determine whether these parameters are useful for classifying the cultivars.; RESULTSSignificant Pearson's correlations were found due to the common and complex interactions between the constituents of potatoes and their properties (P < 0.05). Principal component analysis revealed the correlations among the physicochemical properties, and the first two principal components explained 56.84% of the variance among the cultivars studied.; CONCLUSIONThe eight cultivars could be classified into three groups: (1) Red Pontiac, Caesar, Kennebec, Agria and Cherie cultivars, (2) Agata and Monalisa cultivars and (3) Spirit cultivar. The results demonstrated that certain nutritional and functional parameters indicated the potential efficacy of different cultivars to satisfy the nutritional needs of consumers, improving the knowledge on the biochemical basis of potato processing to obtain higher-quality products. (c) 2015 Society of Chemical Industry

In this study, chlorine dioxide (ClO2), sodium hypochlorite (NaClO), hydrogen peroxide (H2O2), citric acid (C6H8O7) and ethanol (EtOH) were applied to strawberry fruit using a fogger with an ultrasonic aerosol generator that can produce spheres at 1.2 mu m in diameter. Fruit were treated at room temperature for 30 min while with the fogger operating and for an additional 30 min in the fog consisting of disinfectants. Treated fruit were stored at 1 degrees C for 5 days and an additional 2 days at 20 degrees C. The percentage of infected fruit and microorganism populations on the surface of the fruit and in the storage air were evaluated to determine the efficacy of treatments. Chlorine dioxide, hydrogen peroxide, sodium hypochlorite, citric acid and ethanol significantly reduced the percentage of infected fruit. The percentage of decay was reduced to 14.5% from 83.2% by the hydrogen peroxide treatment at 2000 mu L L-1 and to 32.5% by sodium hypochlorite at 2000 mu L L-1 in the first experiment. In addition, all chemicals significantly reduced the total number of microorganisms on the fruit surface and in the storage atmosphere. Hydrogen peroxide at 2000 mu L L-1 achieved approximately a 2 log reduction on the surface microorganism population in the first experiment. The study showed that application of disinfectants by fogging was effective in reducing postharvest diseases of strawberry.

1. The objective of this experiment was to study the influences of xylanase and citric acid on the performance, nutrient digestibility, digesta viscosity, duodenal histology, and gut microflora of broilers fed on a wheat based diet. 2. The experiment was carried out as a 2 × 3 factorial arrangement with two concentrations of xylanase (0 and 200 mg/kg) and three concentrations of citric acid (0, 20 and 40 g/kg). A total of 408 one-day-old chickens with similar body weight were distributed into 24 pens with 17 birds/pen. Each dietary treatment was given to 4 replicate pens from 0 to 24 d of age. To determine the apparent nutrient digestibility, chromic oxide (3 g/kg) was added to the diets as an indigestible marker. 3. Xylanase significantly increased body weight gain at 24 d of age by 1·4% and improved gain-to-feed (G:F) by 3·6%. The inclusion of 40 g/kg citric acid decreased feed intake and body weight gain by 15·4% and 11·8%, respectively. The inclusion of 20 g/kg of citric acid decreased feed intake, but it did not affect body weight gain of broilers at 24 d of age. The inclusion of 20 and 40 g/kg citric acid improved G:F by 3·8 and 4·3% respectively. Xylanase significantly decreased the viscosity of digesta and improved retention of DM, CP, and energy. 4. Xylanase and citric acid did not have any effect on the histo-morphology of the duodenum and intestinal microbial population. 5. In conclusion, citric acid at 20 g/kg decreased feed intake, did not have a negative effect on body weight gain, and improved G:F. Xylanase decreased digesta viscosity, increased nutrient retention and consequently improved performance of broilers fed on a wheat based diet.

Zinc (Zn) deficiency is a widely occurring constraint for rice production and for human nutrition. Scarcity of water is leading to a shift from flooded to aerobic rice production, which can have an impact on Zn deficiency in rice. Zinc bioavailability is a function of both soil and plant factors that can be altered by water management, particularly in relation to conditions in the rhizosphere. Biogeochemical modeling based on bulk soil conditions failed to predict the effect of water management on Zn bioavailability, but revealed that dissolved organic anions, pH, and redox conditions were major determinants. Rhizosphere sampling is needed to understand the difference in Zn mobilization and uptake between flooded and aerobic cultivation systems. Zinc bioavailability is not only affected by changes in the chemical properties of the soils, but also by biological processes such as mycorrhizal inoculation and root release of organic compounds into rhizosphere. Phytosiderophores and organic acids are two classes of Zn chelators secreted from roots that have been linked to the release of Zn from soil-bound forms and its subsequent uptake by plants. A shift to aerobic condition provides a favorable environment for activity of mycorrhizal fungi and enhanced mycorrhizal inoculation under aerobic conditions has been shown to increase plant Zn uptake. Aerobic rice genotypes with varying tolerance to Zn deficiency display a trade-off between mycorrhizal Zn responsiveness and root exudation of Zn chelator in the rhizosphere, which is probably due to a competition for carbon. Potential agronomic management practices in aerobic rice production systems are discussed, with an emphasis on their roles in improving bioavailability of Zn. Addition of Zn fertilizers by soil or foliar application have been shown to increase Zn concentration in cereal grains but the extent of the increase differs among crop species. The shift from flooded to aerobic condition can cause significant N transformations, which may consequently affect Zn mobilization and uptake. An appropriate N management strategy, including an effective combination of source, rate, application method, and timing, should consider the effects on soil pH. Application of P fertilizer should be done with careful consideration to the effect on Zn uptake. A reasonable cropping system (intercropping and crop rotation) could prevent Zn deficiency and offer an effective and sustainable pathway to Zn biofortification. Keeping these points in mind, this review describes our current knowledge of Zn bioavailability as affected by changes in soil–plant interactions caused by the transition from flooded to aerobic rice cultivation.

International audience; Campylobacter-contaminated poultry meat is an important source of foodborne gastroenteritis and poses a serious health burden in industrialized countries. Broiler chickens are commonly regarded as a natural host for this pathogen and infected birds carry a very high Campylobacter load in their gastrointestinal tract, especially the ceca. This results in contaminated carcasses during processing. While hygienic measures at the farm and control measures during carcass processing can have some effect on the reduction of Campylobacter numbers on the retail product, intervention at the farm level by reducing colonization of the ceca should be taken into account in the overall control policy. This review gives an up-to-date overview of suggested on-farm control measures to reduce the prevalence and colonization of Campylobacter in poultry.

International audience; Trees play a crucial role in nutrient cycling and ecosystem fertility, notably through rhizosphere processes. The aim of this study was to compare soil physicochemical properties between bulk soil and rhizosphere of several tree species, and to compare rhizosphere properties between fertilized and non-fertilized conditions. The soil sampling was performed in Breuil-Chenue forest (North-East of France) in seven stands: native forest (old beech (Fagus sylvatica L.) and oak (Quercus sessiliflora Smith) coppice with standards; CwS), beech, oak (Quercus petraea [Matt.] Liebl.), Douglas-fir and fertilised Douglas-fir, Norway spruce (Picea abies Karst.) and fertilised Norway spruce. Systematic soil sampling was performed at 0-3, 3-10, and 10-23 cm in 20 calibrated pits. The rhizosphere of the different species was generally enriched in C, N, Ca, Mg, and K. Interestingly, the same positive effect was observed in the fertilised plots. The rhizosphere effect varied between tree species for C, "base" cations, pH(water) and cation exchange capacity. This study reveals that interactions between roots, microorganisms and soil can enrich the pool of nutrients in the rhizosphere compared to bulk soil whatever the soil fertility conditions, and that the magnitude of the rhizosphere effect depends on tree species.