Search

Abstract: Hyperspectral remote sensing has the potential to map numerous attributes of the Earth’s surface, including spatial patterns of biological diversity. Grasslands are one of the largest biomes on Earth. Accurate mapping of grassland biodiversity relies on spectral discrimination of endmembers of species or plant functional types. We focused on spectral separation of grass lineages that dominate global grassy biomes: Andropogoneae (C4), Chloridoideae (C4), and Pooideae (C3). We examined leaf reflectance spectra (350–2,500 nm) from 43 grass species representing these grass lineages from four representative grassland sites in the Great Plains region of North America. We assessed the utility of leaf reflectance data for classification of grass species into three major lineages and by collection site. Classifications had very high accuracy (94%) that were robust to site differences in species and environment. We also show an information loss using multispectral sensors, that is, classification accuracy of grass lineages using spectral bands provided by current multispectral satellites is much lower (accuracy of 85.2% and 61.3% using Sentinel 2 and Landsat 8 bands, respectively). Our results suggest that hyperspectral data have an exciting potential for mapping grass functional types as informed by phylogeny. Leaf‐level hyperspectral separability of grass lineages is consistent with the potential increase in biodiversity and functional information content from the next generation of satellite‐based spectrometers.

Anthropization worldwide is increasingly homogenizing biodiversity, i.e., impoverishment of phylogenetic and functional diversity. This study aimed to assess plant phylogenetic relationships of riparian communities in anthropogenically disturbed and undisturbed sites across Continental Portugal. For the analyses, we used 947 species distributed in 205 undisturbed sites and 180 disturbed sites sampled in 100 m plots distributed throughout the country. Then, we assessed the phylogenetic diversity and structure, evolutionary distinctiveness (ED), and conservation of functional traits (life forms) and geographic origin (alien or native) in each site. Our findings. Indicated a higher phylogenetic diversity (higher scores for PD, MPD, MNTD and their standardized effect size) and ED in the undisturbed sites compared to the disturbed ones. The lower phylogenetic diversity in the disturbed sites also relates to the phylogenetic conservatism we found for the lineages of alien and hydrophyte species, which increases the diversity homogenization in those sites. On the other hand, we also recorded higher aliens' ED for the undisturbed sites. Based on the results, we conclude that although the undisturbed sites still harbor higher phylogenetic diversity, they also require monitoring to track the spread of alien species from phylogenetic distant lineages (i.e., high ED) that might thrive in the native communities. [ABSTRACT FROM AUTHOR]

Leaf and wood functional traits of trees are related to growth, reproduction, and survival, but the degree of phylogenetic conservatism in these relationships is largely unknown. In this study, we describe the variability of strategies involving leaf, wood and demographic characteristics for tree genera distributed across the Amazon Region, and quantify phylogenetic signal for the characteristics and their relationships. Leaf and wood traits are aligned with demographic variables along two main axes of variation. The first axis represents the coordination of leaf traits describing resource uptake and use, wood density, seed mass, and survival. The second axis represents the coordination between size and growth. Both axes show strong phylogenetic signal, suggesting a constrained evolution influenced by ancestral values, yet the second axis also has an additional, substantial portion of its variation that is driven by functional correlations unrelated to phylogeny, suggesting simultaneously higher evolutionary lability and coordination. Synthesis. Our results suggest that life history strategies of tropical trees are generally phylogenetically conserved, but that tree lineages may have some capability of responding to environmental changes by modulating their growth and size. Overall, we provide the largest‐scale synopsis of functional characteristics of Amazonian trees, showing substantial nuance in the evolutionary patterns of individual characteristics and their relationships. Read the free Plain Language Summary for this article on the Journal blog. [ABSTRACT FROM AUTHOR]

Abstract Background Interest in the evolution of climatic niches, particularly in understanding the potential adaptive responses of species under climate change, has increased both theoretically and within macroecological studies. These studies have provided valuable insights into how climatic traits of species influence their niche evolution. In this study, we aim to investigate whether niche conservatism plays a role in the species diversification of Nymphaea, a group of aquatic plants with a cosmopolitan distribution that is facing severe habitat loss. We will use climatic models and phylogenetic data for 23 species to reconstruct Nymphaea’s niche evolution, measure niche overlap, and assess disparity through time while testing for evolutionary models. Results There was a lot of overlap in niches both within and between groups, especially for species that can be found in many places. The breadth and peaks of the niche profile varied depending on the bioclimatic variables, which suggested that the species evolved differently to cope with changes in climate. The analysis also showed that evolutionary changes happened across the phylogeny, with weak to moderate signals. The morphological disparity index (MDI) values indicated that there were disparities within subclades over time but not between or among them. Niche reconstruction and evolution analysis revealed both convergent and divergent evolution among various variables. For example, N. immutabilis, N. atrans, N. violancea, and N. nouchali evolved towards intermediate temperatures for bio2 and bio3 (isothermity) while moving towards extreme temperatures for bio8 and bio9 (wettest and driest average quarterly temperatures). Conclusion Our study will improve our understanding of how changes in climatic niches are potentially driving the evolution of Nymphaea. It has significant scientific implications for the limits, assemblages, evolution, and diversification of species. This information is crucial for the ongoing efforts of conservation and management, particularly considering the inevitable effects of climate change.

Background: Interest in the evolution of climatic niches, particularly in understanding the potential adaptive responses of species under climate change, has increased both theoretically and within macroecological studies. These studies have provided valuable insights into how climatic traits of species influence their niche evolution. In this study, we aim to investigate whether niche conservatism plays a role in the species diversification of Nymphaea, a group of aquatic plants with a cosmopolitan distribution that is facing severe habitat loss. We will use climatic models and phylogenetic data for 23 species to reconstruct Nymphaea's niche evolution, measure niche overlap, and assess disparity through time while testing for evolutionary models. Results: There was a lot of overlap in niches both within and between groups, especially for species that can be found in many places. The breadth and peaks of the niche profile varied depending on the bioclimatic variables, which suggested that the species evolved differently to cope with changes in climate. The analysis also showed that evolutionary changes happened across the phylogeny, with weak to moderate signals. The morphological disparity index (MDI) values indicated that there were disparities within subclades over time but not between or among them. Niche reconstruction and evolution analysis revealed both convergent and divergent evolution among various variables. For example, N. immutabilis, N. atrans, N. violancea, and N. nouchali evolved towards intermediate temperatures for bio2 and bio3 (isothermity) while moving towards extreme temperatures for bio8 and bio9 (wettest and driest average quarterly temperatures). Conclusion: Our study will improve our understanding of how changes in climatic niches are potentially driving the evolution of Nymphaea. It has significant scientific implications for the limits, assemblages, evolution, and diversification of species. This information is crucial for the ongoing efforts of conservation and management, particularly considering the inevitable effects of climate change. [ABSTRACT FROM AUTHOR]

Unveiling the ecological and evolutionary mechanisms that guide the differentiation of various plant growth forms into vertical forest strata during forest degradation continues to pose a challenge. We utilized the biogeochemical niche theory to decipher these mechanisms. We measured leaf concentrations of basal elements (C, N, P, K, Ca, and Mg) and used them to generate the biogeochemical niches in herbs, shrubs, trees, and climbers from different vertical strata within a degraded forest and its neighboring mature forest in subtropical montane zones. Our results showed that biogeochemical niches varied significantly among growth forms. Biogeochemical niches also differed significantly between species in the degraded and mature forests, as evidenced by the significantly lower leaf C concentration relative to other nutrients in degraded forest species. This could be attributable mainly to the expansive canopy openness in the degraded forest, facilitating the colonization of light-demanding self-supporters and climbers. The phylogenetic signals in leaf nutrient concentrations were significantly present across all species, suggesting the general similarities in biogeochemical niches among closely related species. Following evolutionary model comparisons, stabilizing selection towards varying optimal leaf nutrient concentrations for distinct growth forms in the degraded or mature forest emerged as the most suitable model. Our study thus highlights the important role of phylogenetic biogeochemical niche conservatism and stabilizing selection towards various optimal leaf nutrient compositions for diverse growth forms in both degraded and mature forests in the formation of vertical plant communities during subtropical forest degradation.

Abstract Traits do not evolve in isolation but often as part of integrated trait syndromes, yet the relative contributions of environmental effects and evolutionary history on traits and their correlations are not easily resolved. In the present study, we develop a methodological framework to elucidate eco‐evolutionary patterns in functional trait syndromes. We do so by separating the amount of variance and covariance related to phylogenetic heritage and environmental variables (environmental phylogenetic conservatism), only phylogenetic heritage (non‐attributed phylogenetic conservatism) and only to environmental variables (evolutionarily labile environmental effects). Variance–covariance structures of trait syndromes are displayed as networks. We then use this framework to guide a newly derived imputation method based on machine learning models that predict trait values for unsampled taxa, considering environmental and phylogenetic information as well as trait covariation. TrEvol is presented as an R package providing a unified set of methodologies to study and predict multivariate trait patterns and improve our capacity to impute trait values. To illustrate its use, we leverage both simulated data and species‐level traits related to hydraulics and the leaf economics spectrum, in relation to an aridity index, demonstrating that most trait correlations can be attributed to environmental phylogenetic conservatism. This conceptual framework can be employed to examine issues ranging from the evolution of trait adaptation at different phylogenetic depths to intraspecific trait variation.

Serially homologous elements pose an identification problem in fragmentary records, particularly those of vertebrate fossils. Examples include individual vertebrae in the vertebral column and teeth in a tooth row. Until an isolated element can be accurately attributed to a specific position within its series, multiple lines of ecological and evolutionary research cannot be conducted. However, varying levels of differentiability between loci, and varying patterns of differentiation across clades, make it impossible to develop a single set of diagnostic traits for any particular set of serial homologues, particularly mammalian molars. Here, we test the utility of a set of classification criteria for distinguishing molar tooth positions of hyraxes (Mammalia, Afrotheria, Hyracoidea), which have been considered indistinguishable in previous taxonomic studies. As part of the test we evaluate the degree to which between-locus variation is conservative in this taxon, which would strengthen the predictive power of proposed traits even in cases where species identity is unknown. Suitable tests for hypotheses of conservatism in categorical traits did not exist, to our knowledge, and we therefore explored the behavior of a previously developed metrics, Borges et al.’s δ, to assess conservatism in contrast to phylogenetic signal produced by Brownian motion. This metric shows some promise but the nature of resulting distributions makes tests difficult to interpret, indicating a line of potential future methods improvement. We used a linear morphometric characterization of shape to validate the candidate traits. In the case of hyracoid molars, relatively simple ratios of linear measurements have strong discriminatory power despite evolutionary variation in between-locus differences. Overall, new or understudied taxa are likely to have lower molar loci differentiable by their relative length and talonid vs. trigonid width.

Traits do not evolve in isolation but often as part of integrated trait syndromes, yet the relative contributions of environmental effects and evolutionary history on traits and their correlations are not easily resolved.In the present study, we develop a methodological framework to elucidate eco‐evolutionary patterns in functional trait syndromes. We do so by separating the amount of variance and covariance related to phylogenetic heritage and environmental variables (environmental phylogenetic conservatism), only phylogenetic heritage (non‐attributed phylogenetic conservatism) and only to environmental variables (evolutionarily labile environmental effects). Variance–covariance structures of trait syndromes are displayed as networks. We then use this framework to guide a newly derived imputation method based on machine learning models that predict trait values for unsampled taxa, considering environmental and phylogenetic information as well as trait covariation. TrEvol is presented as an R package providing a unified set of methodologies to study and predict multivariate trait patterns and improve our capacity to impute trait values.To illustrate its use, we leverage both simulated data and species‐level traits related to hydraulics and the leaf economics spectrum, in relation to an aridity index, demonstrating that most trait correlations can be attributed to environmental phylogenetic conservatism.This conceptual framework can be employed to examine issues ranging from the evolution of trait adaptation at different phylogenetic depths to intraspecific trait variation. [ABSTRACT FROM AUTHOR]

Serially homologous elements pose an identification problem in fragmentary records, particularly those of vertebrate fossils. Examples include individual vertebrae in the vertebral column and teeth in a tooth row. Until an isolated element can be accurately attributed to a specific position within its series, multiple lines of ecological and evolutionary research cannot be conducted. However, varying levels of differentiability between loci, and varying patterns of differentiation across clades, make it impossible to develop a single set of diagnostic traits for any particular set of serial homologues, particularly mammalian molars. Here, we test the utility of a set of classification criteria for distinguishing molar tooth positions of hyraxes (Mammalia, Afrotheria, Hyracoidea), which have been considered indistinguishable in previous taxonomic studies. As part of the test we evaluate the degree to which between-locus variation is conservative in this taxon, which would strengthen the predictive power of proposed traits even in cases where species identity is unknown. Suitable tests for hypotheses of conservatism in categorical traits did not exist, to our knowledge, and we therefore explored the behavior of a previously developed metrics, Borges et al.’s δ, to assess conservatism in contrast to phylogenetic signal produced by Brownian motion. This metric shows some promise but the nature of resulting distributions makes tests difficult to interpret, indicating a line of potential future methods improvement. We used a linear morphometric characterization of shape to validate the candidate traits. In the case of hyracoid molars, relatively simple ratios of linear measurements have strong discriminatory power despite evolutionary variation in between-locus differences. Overall, new or understudied taxa are likely to have lower molar loci differentiable by their relative length and talonid vs. trigonid width. [ABSTRACT FROM AUTHOR]

Mycorrhizal symbioses are known to strongly influence plant performance, structure plant communities and shape ecosystem dynamics. Plant mycorrhizal traits, such as those characterising mycorrhizal type (arbuscular (AM), ecto‐, ericoid or orchid mycorrhiza) and status (obligately (OM), facultatively (FM) or non‐mycorrhizal) offer valuable insight into plant belowground functionality. Here, we compile available plant mycorrhizal trait information and global occurrence data (∼100 million records) for 11,770 vascular plant species. Using a plant phylogenetic mega‐tree and high‐resolution climatic and edaphic data layers, we assess phylogenetic and environmental correlates of plant mycorrhizal traits. We find that plant mycorrhizal type is more phylogenetically conserved than plant mycorrhizal status, while environmental variables (both climatic and edaphic; notably soil texture) explain more variation in mycorrhizal status, especially FM. The previously underestimated role of environmental conditions has far‐reaching implications for our understanding of ecosystem functioning under changing climatic and soil conditions. [ABSTRACT FROM AUTHOR]

Summary: Root traits including root exudates are key factors affecting plant interactions with soil and thus play an important role in determining ecosystem processes. The drivers of their variation, however, remain poorly understood. We determined the relative importance of phylogeny and species ecology in determining root traits and analyzed the extent to which root exudate composition can be predicted by other root traits.We measured different root morphological and biochemical traits (including exudate profiles) of 65 plant species grown in a controlled system. We tested phylogenetic conservatism in traits and disentangled the individual and overlapping effects of phylogeny and species ecology on traits. We also predicted root exudate composition using other root traits.Phylogenetic signal differed greatly among root traits, with the strongest signal in phenol content in plant tissues. Interspecific variation in root traits was partly explained by species ecology, but phylogeny was more important in most cases. Species exudate composition could be partly predicted by specific root length, root dry matter content, root biomass, and root diameter, but a large part of variation remained unexplained.In conclusion, root exudation cannot be easily predicted based on other root traits and more comparative data on root exudation are needed to understand their diversity. [ABSTRACT FROM AUTHOR]

Deciphering ecosystem multifunctionality (EMF) driven by abiotic and biotic factors is crucial for evaluating soil nutrient cycling and retention. Yet, there is little information on whether microbial r/K‐selection can play the same role as community diversity to reflect EMF. Using Illumina MiSeq sequencing, phospholipid fatty acid (PLFA) technique, and multiple statistical analyses, we estimated linkages among salinity, soil EMF, community diversities, microbial r/K‐selection, and bacterial ecological assembly processes and phylogenetic signals in salinized agricultural soils (0.09–19.91 dS m−1). Salinity significantly negatively correlated with soil EMF, bacterial taxonomic and phylogenetic α‐diversities, and bacterial K‐selection represented by the Acidobacteria/Proteobacteria (Aci:Pro) ratio (0–0.50). There was a significantly positive correlation between bacterial K‐selection and soil EMF (Pearson's r = 0.545, p < 0.001). Deterministic processes (60.0–85.5%) dominated bacterial community assemblies along salinity gradients (i.e., 0–1, 1–2, 2–4, 4–8, 8–16, and >16 dS m−1), and salinity displayed a critical role in balancing stochastic and deterministic processes. To our knowledge, this study is the first to report elevated salinity decreased soil EMF and a bacterial shift from K‐ to r‐selection. Environmental constraint and phylogenetic conservatism showed strongly negative influences on bacterial K‐selection. These findings enrich the knowledge of bacterial diversity maintenance in salinized agricultural soils and reveal close linkage between bacterial K‐selection and soil EMF. Therefore, the bacterial K‐selection index of Aci:Pro could serve as a bioindicator for soil EMF. [ABSTRACT FROM AUTHOR]

Evolutionary relatedness underlies patterns of functional diversity in the natural world. Hyperspectral remote sensing has the potential to detect these patterns in plants through inherited patterns of leaf reflectance spectra. We collected leaf reflectance data across the California flora from plants grown in a common garden. Regions of the reflectance spectra vary in the depth and strength of phylogenetic signal. We also show that these differences are much greater than variation due to the geographic origin of the plant. At the phylogenetic extent of the California flora, spectral variation explained by the combination of ecotypic variation (divergent evolution) and convergent evolution of disparate lineages was minimal (3%–7%) but statistically significant. Interestingly, at the extent of a single genus (Arctostaphylos) no unique variation could be attributed to geographic origin. However, up to 18% of the spectral variation among Arctostaphylos individuals was shared between phylogeny and intraspecific variation stemming from ecotypic differences (i.e., geographic origin). Future studies could conduct more structured experiments (e.g., transplants or observations along environmental gradients) to disentangle these sources of variation and include other intraspecific variation (e.g., plasticity). We constrain broad‐scale spectral variability due to ecotypic sources, providing further support for the idea that phylogenetic clusters of species might be detectable through remote sensing. Phylogenetic clusters could represent a valuable dimension of biodiversity monitoring and detection. Plain Language Summary: Related plant species often share inherited features, and we show that this is the case for the way the plant leaves reflect certain wavelengths of light. We collected leaf reflectance data from plants in a common garden where plants from across California are grown. Evolution explained more of the reflectance qualities of leaves than geographic origin of the plant species. These results provide support for the idea that remote sensing could help monitor biodiversity change by detecting groups of related plants. Key Points: We collected leaf reflectance data from across the California flora from plants grown in a common gardenDifferent parts of the spectra capture deeper evolutionary differences among plants and are more important than geographic originThis provides support for the idea that phylogenetic clusters of species might be detectable through remote sensing [ABSTRACT FROM AUTHOR]

PremiseWe investigated whether phylogenetic conservatism can improve the performance of seed germinability prediction models. Previous studies in tallgrass prairie and alpine meadow revealed that seed morphological traits demonstrate phylogenetic conservatism. We hypothesized that phylogenetic conservatism in seed traits could help predict the seed germinability, under the assumption that seed traits contain phylogenetic signals.MethodsWe measured seed germination percentage and seed morphological traits (seed mass, seed height, and seed surface area) on 34 native species from shortgrass prairie in North America. We supplemented these data with similar data from the literature on 11 more species. We calculated the robustness of the phylogenetic signal of each trait to the number of species sampled. We also compressed the phylogenetic distance matrix to a two-dimensional space, and applied the Akaike information criterion to evaluate the effects of phylogeny on seed germinability prediction models.Key resultsWe found weak but significant phylogenetic signals in seed mass and seed height in the full data set. These phylogenetic signals were not able to improve seed germinability prediction model performance among shortgrass prairie species. Our robustness tests of phylogenetic signals using random sub-sampling showed that the detection rate of phylogenetic signals in seed mass was increased along with the expansion of species pool, and nearly 100% at 40 species. However, the detection rate of phylogenetic signals in seed height was constantly low, around 20%.ConclusionWhen the phylogenetic signals are weak, the phylogenetic position does not improve germinability prediction model performance. Therefore, phylogenetic signals detected during a single species pool calculation may not accurately reflect the phylogenetic conservatism of the trait in a plant community. We suggest testing for robustness of phylogenetic signals using random sub-sampling tests.

The effects of climate change on plant phenology have been widely recognized around the world. However, the effect of plant internal factors (such as phylogeny) on the variations in phenology among plant species remains unclear. In this study, we investigated the phylogenetic conservatism in spring phenological traits using phylogenetic signal and evolutionary models, including Brownian motion (BM) model, Ornstein–Uhlenbeck (OU) model and white noise (WN) model, based on the phenological data of 48 temperate plant species in Northeast China. We also explored the relative contributions of phylogeny and adaptation to native climate (i.e., the climate in native range of species) to the variations in the phenological traits among species using phylogenetic eigenvector regression and variance partitioning analysis. The results showed thatspring phenological traits conformed to the OU model, indicating thatspring traits were phylogenetically conserved. The effect of phylogeny on flowering traits was stronger than that on leaf-out traits. Additionally, the adaptation to native climate contributed more to the variations in spring phenological traits among species than phylogeny, and adaptation to native climate explained more variations in leaf-out traits than in flowering traits. Our results suggested that the spring phenological traits were constrained by both phylogeny and adaptation to native climate. However, the adaptation to native climate had a stronger effect on the variations in phenological traits than phylogeny. Therefore, the degree of similarity in spring phenological traits across closely related species depends on the degree of similarity in the environmental conditions where these close relatives are distributed.

• Biogeochemical niches vary among growth forms thriving in various forest strata. • Biogeochemical niches differ between degraded and mature forest species. • Biogeochemical niches are phylogenetically conserved during forest degradation. • Biogeochemical niches are converged for plant strata during forest degradation. Unveiling the ecological and evolutionary mechanisms that guide the differentiation of various plant growth forms into vertical forest strata during forest degradation continues to pose a challenge. We utilized the biogeochemical niche theory to decipher these mechanisms. We measured leaf concentrations of basal elements (C, N, P, K, Ca, and Mg) and used them to generate the biogeochemical niches in herbs, shrubs, trees, and climbers from different vertical strata within a degraded forest and its neighboring mature forest in subtropical montane zones. Our results showed that biogeochemical niches varied significantly among growth forms. Biogeochemical niches also differed significantly between species in the degraded and mature forests, as evidenced by the significantly lower leaf C concentration relative to other nutrients in degraded forest species. This could be attributable mainly to the expansive canopy openness in the degraded forest, facilitating the colonization of light-demanding self-supporters and climbers. The phylogenetic signals in leaf nutrient concentrations were significantly present across all species, suggesting the general similarities in biogeochemical niches among closely related species. Following evolutionary model comparisons, stabilizing selection towards varying optimal leaf nutrient concentrations for distinct growth forms in the degraded or mature forest emerged as the most suitable model. Our study thus highlights the important role of phylogenetic biogeochemical niche conservatism and stabilizing selection towards various optimal leaf nutrient compositions for diverse growth forms in both degraded and mature forests in the formation of vertical plant communities during subtropical forest degradation. [ABSTRACT FROM AUTHOR]

Negative plant–soil feedback (PSF) has been widely considered to be a primary mechanism maintaining plant diversity. Previous studies have shown that rare species suffer stronger negative conspecific PSF than common species, but it remains unclear how rare species persist if they are more strongly self‐limited.Here, we used shade‐house and field experiments to test soil feedback effects of phylogenetically related species on seedling growth, with seven species of contrasting local abundance, in a subtropical forest, China. We quantified the PSF of conspecifics and heterospecifics and assessed the phylogenetic dependence of the feedback.Both experiments showed that although rare species suffered strong negative PSF in soils of conspecifics or phylogenetically close heterospecifics, no such feedback was found in the soils of phylogenetically distant heterospecifics. In contrast, common species had no or weak negative conspecific PSF but strong heterospecific soil PSF.Synthesis. The variation in the phylogenetically dependent PSF among rare and common species evidenced in this study ensures that rare species would grow well in the neighbourhood of phylogenetically distant heterospecifics but do poorly under their own or close relatives, while common species perform relatively well in their own neighbourhood but poorly in other's neighbourhood. This phylogenetically dependent PSF facilitates the rare–common species coexistence in communities. [ABSTRACT FROM AUTHOR]

Plant--pathogens and insect pests, hereafter pests, play an important role in structuring ecological communities, yet both native and introduced pests impose significant pressure on wild and managed systems, and pose a threat to food security. Global changes in climate and land use, and transportation of plants and pests around the globe are likely to further increase the range, frequency and severity of pest outbreaks in the future. Thus, there is a critical need to expand on current ecological theory to address these challenges. Here, we outline a phylogenetic framework for the study of plant and pest interactions. In plants, a growing body of work has suggested that evolutionary relatedness, phylogeny, strongly structures plant-pest associations--from pest host breadths and impacts, to their establishment and spread in new regions. Understanding the phylogenetic dimensions of plant-pest associations will help to inform models of invasive species spread, disease and pest risk in crops, and emerging pest outbreaks in native plant communities--which will have important implications for protecting food security and biodiversity into the future. [ABSTRACT FROM AUTHOR]

The study of plant species and trait distributions can provide answers to many of the ecological challenges of our times, from climate change to the biodiversity crisis. Although traits are classically measured at the species level, understanding intraspecific variation is necessary to determine the type of response species will have to climate change. Here we measured and analyzed seven leaf traits (leaf area—LA, specific leaf area—SLA, leaf thickness—LT, leaf dry mass content—LDMC, venation density—VD, stomata length—SL, and stomata density—SD) across 14 locally dominant palm species (10 individuals/species) distributed along hydro-topographic gradients (1.4–37 m of terrain height above nearest drainage) of a central Amazonian forest to disentangle the role of species identity, relatedness, and local hydrology on trait variation and covariation. Our results show that trait variation is not always larger between species than within species as expected. Intraspecific variation accounted for 23–74% of trait variation depending on the trait. Most of the variation happened at species level for SL, LA, LT, and SD but not for SLA, VD, and LDMC. For a third of the traits (LDMC, SLA, and SD), we found some evidence of phylogenetic inertia. This lack of independency among traits is confirmed by the maintenance of strong correlation among some of those traits after controlling for local environmental conditions. Intraspecific variation, however, was not related to height above nearest drainage for any of the traits. Most of the trait–environment relationships were species-specific. Therefore, the change in palm trait composition detected along topography, from higher community means of SLA and LA, lower LT, LDMC, SL, and SD in the wet valleys to opposite traits in drier plateaus, is mostly due to the turnover in species composition and relative abundance variation. We conclude these palm species have well-defined hydrological niches, but their large intraspecific variation in leaf traits does not contribute to the adjustment of individuals to the local hydrological conditions in this Amazonian forest.

Although functional and phylogenetic diversities are increasingly used in ecology for a variety of purposes, their relationship remains unclear, and this relationship likely differs among taxa, yet most recent studies focused on plants. We hypothesize that communities may be diverse in functional traits due to presence of: many phylogenetic lineages, trait divergence within lineages, many species and random functional variation among species, weak filtering of traits in favorable environments, or strong trait divergence in unfavorable environments. We tested these predictions for taxa showing higher (ants), or lower (spiders, ground beetles) degrees of competition and niche construction, both of which might decouple functional traits from phylogenetic position or from the environment. Studying > 11,000 individuals and 216 species from coastal heathlands, we estimated functional as minimum spanning trees using traits related to the morphology, feeding habits and dispersal, respectively. Relationships between functional and phylogenetic diversities were overall positive and strong. In ants, this relationship disappeared after accounting for taxonomic diversities and environments, whereas in beetles and spiders taxonomic diversity is related to functional diversity only via increasing phylogenetic diversity. Environmental constraints reduced functional diversity in ants, but affected functional diversity only indirectly via phylogenetic diversity (ground beetles) and taxonomic and then phylogenetic diversity (spiders and ground beetles). Results are consistent with phylogenetic conservatism in traits in spiders and ground beetles. In ants, in contrast, traits appear more phylogenetically neutral with any new species potentially representing a new trait state, tentatively suggesting that competition or niche construction might decouple phylogenetics from trait diversity. [ABSTRACT FROM AUTHOR]

The presence of nanoplastics posed a potential threat to coastal saline-alkaline wetlands where nitrogen (N) fertilizer is being implemented as an important ecological restoration measure. Notwithstanding, the effects of N inputs on plant community in polypropylene-nanoplastics (PP-NPs) coexistence environments are largely unknown. To address this, we investigated the effects of PP-NPs addition alone or combined N supply on community aboveground biomass, morphological traits, diversity, composition, niche differentiation, interspecific interactions, and assembly. Our results showed that the PP-NPs addition alone reduced community aboveground biomass and morphological traits. However, the addition of high concentration (0.5%) PP-NPs alone favored community α-diversity and reduced community stability, which could be weakened through combined N supply. Overall, the effect of PP-NPs addition alone on plant community composition was greater than that of combined N supply. We also demonstrated PP-NPs addition alone and combined N supply reduced the niche breadth of the plant community and affected the niche overlap of dominant species. In the assembly of plant communities, stochastic processes played a dominant role. We conclude that N fertilization can amend the terrestrial nanoplastics pollution, thus mitigating the effects of PP-NPs on the plant community. Combined N supply can weaken the effects of PP-NPs on plant community. [Display omitted] • PP-NPs decreased plant growth and community stability. • Relative high concentration of PP-NPs favored plant community α-diversity. • PP-NPs converged the co-occurring plant species, but N supply diverged them. • N supply neutralized the effects of PP-NPs on plant community. [ABSTRACT FROM AUTHOR]

Fungal pathogens are responsible for 30% of emerging infectious diseases (EIDs) in plants. The risk of a pathogen emerging on a new host is strongly tied to its host breadth; however, the determinants of host range are still poorly understood. Here, we explore the factors that shape host breadth of plant pathogens within Botryosphaeriaceae , a fungal family associated with several devastating diseases in economically important crops. While most host plants are associated with just one or a few fungal species, some hosts appear to be susceptible to infection by multiple fungi. However, the variation in the number of fungal taxa recorded across hosts is not easily explained by heritable plant traits. Nevertheless, we reveal strong evolutionary conservatism in host breadth, with most fungi infecting closely related host plants, but with some notable exceptions that seem to have escaped phylogenetic constraints on host range. Recent anthropogenic movement of plants, including widespread planting of crops, has provided new opportunities for pathogen spillover. We suggest that constraints to pathogen distributions will likely be further disrupted by climate change, and we may see future emergence events in regions where hosts are present but current climate is unfavorable. • Botryosphaeriaceae is a fungal family containing many important plant pathogens • What determines the host breadth of plant fungal pathogens is not fully understood • There is no phylogenetic signal in the number of hosts with which fungi associate • Phylogenetic constraints largely determine fungal taxonomic and geographical extent • Climate change and plant introductions may facilitate novel emergence events [ABSTRACT FROM AUTHOR]

Questions: Documenting the patterns and drivers of functional trait distributions at large spatial scales is key to our fundamental understanding of the composition of plant assemblages. However, phylogeographic patterns of fruit development time (FDT, the difference between flowering and fruiting dates) have remained unstudied. Here we compiled reproductive phenology (flowering and fruiting time) and species distribution data for 6838 angiosperm species in China to explore whether FDT is more phylogenetically conserved as latitude and elevation increase, whether the phylogenetic signal of FDT correlates with phylogenetic structure and potential climatic drivers across China, and whether the environmental determinants of phylogenetic signal of FDT differ between herbaceous and woody species. Location: China Methods: We divided China into 268 200 × 200 km grid cells and calculated the phylogenetic signals of FDT in each grid cell using pagel’s λ. We then regressed the phylogenetic signals of FDT as a function of either latitude or elevation, individually. We examined the relationship between phylogenetic signals of FDT and climate variables using both ordinary and spatial linear regressions. We also examined the relationship between the phylogenetic signal of FDT and either net relatedness index (NRI) or clade age of each grid-cell. Results: We found that phylogenetic signals in FDT increased as elevation and latitude increased. The Pagel’s λ of FDT was negatively correlated with clade age but positively correlated with NRI. Precipitation in the wettest quarter was the primary variable affecting the phylogenetic signal for herbaceous species, while minimum temperature of the coldest month and temperature seasonality were the two most important climatic factors for woody species. Conclusions: Strength of phylogenetic conservatism of FDT is greater at higher latitudes and elevations. The latitudinal and elevational patterns, where mean clade age of species lowers as temperature decreases, and angiosperm assemblages tend to be more phylogenetically clustered at higher elevations and higher latitudes, could be explained by the Tropical Niche Conservatism hypothesis. The phylogenetic signals of herbs and of woody plants are triggered by different climatic drivers. Our findings have important implications for the study of large-scale geographical gradients in plant species richness, phylogenetic diversity and community assembly.

Aim: Range size conservatism suggests that closely‐related species maintain geographic ranges of similar extent. However, consensus regarding this suggestion has not been reached. To shed more light on this phenomenon, we studied freshwater plant range size conservatism, range overlap and environmental niche conservatism using congeneric species comparison in two continents. In addition, we investigated whether a phylogenetic signal is found in the range sizes of aquatic plants. Location: Europe and North America. Taxon: Freshwater plants. Methods: Across spatial resolutions (50 km2, 100 km2 and 200 km2), we applied Spearman correlations among 347 and 730 pairs of congeneric species in Europe and North America, respectively, and 63 pairs shared between them. In addition, Spearman correlations were used to evaluate how the degree of spatial overlap influences range sizes and which environmental variables explain variation in range sizes. Brownian evolutionary model was used to assess the phylogenetic signal in species range sizes. Results: We found no evidence of range size conservatism across spatial resolutions for any species and species shared between the continents. In addition, range sizes of more closely related species did not overlap geographically more than those of distantly related ones and no support for environmental niche conservatism was evidenced. Main conclusions: We found that aquatic plants show no range size conservatism in the Northern Hemisphere. This means that it is challenging to define different range sizes of freshwater plants through species traits. Furthermore, we are unable to predict unknown distributions of extant aquatic plant species based on known distributional attributes of closely related species. However, our findings suggest that the interpretations of previous investigations on the range sizes of aquatic plants remain valid due to lack of range size conservatism. These practical implications encourage studying range size conservatism across realms and regions, especially for understudied organismal groups. [ABSTRACT FROM AUTHOR]

Phenological events - defined points in the life cycle of a plant or animal - have been regarded as highly plastic traits, reflecting flexible responses to various environmental cues. The ability of a species to track, via shifts in phenological events, the abiotic environment through time might dictate its vulnerability to future climate change. Understanding the predictors and drivers of phenological change is therefore critical. Here, we evaluated evidence for phylogenetic conservatism - the tendency for closely related species to share similar ecological and biological attributes - in phenological traits across flowering plants. We aggregated published and unpublished data on timing of first flower and first leaf, encompassing ̃4000 species at 23 sites across the Northern Hemisphere. We reconstructed the phylogeny for the set of included species, first, using the software program Phylomatic, and second, from DNA data. We then quantified phylogenetic conservatism in plant phenology within and across sites. We show that more closely related species tend to flower and leaf at similar times. By contrasting mean flowering times within and across sites, however, we illustrate that it is not the time of year that is conserved, but rather the phenological responses to a common set of abiotic cues. Our findings suggest that species cannot be treated as statistically independent when modelling phenological responses. Synthesis. Closely related species tend to resemble each other in the timing of their life-history events, a likely product of evolutionarily conserved responses to environmental cues. The search for the underlying drivers of phenology must therefore account for species' shared evolutionary histories. Closely related species tend to resemble each other in the timing of their life-history events, a likely product of evolutionarily conserved responses to environmental cues. The search for the underlying drivers of phenology must therefore account for species' shared evolutionary histories. © 2013 British Ecological Society.

Aim: The aim was to document how body stoichiometry of heterotrophs varies globally and to assess phylogenetic, trophic, habitat and body mass drivers of this interspecific variation in elemental composition, focusing on carbon (C), nitrogen (N) and phosphorus (P). Location: World- wide. Time period: 1930- 2019. Major taxa studied: Amphibians, fishes (Actinopterygii), invertebrates, mammals, microbes and sauropsids (birds and reptiles). Methods: We compiled from the scientific literature a global database of body elemental composition of heterotrophs in marine, freshwater and terrestrial realms. We used model selection and ANCOVAs to investigate the proportion of variance in elemental composition explained by taxonomic groups, diet, habitat and body mass. We assessed the phylogenetic signal in body stoichiometry using Blomberg's K and Pagel's λ statistics. We assessed the phylogenetic structure of interspecific variation in body stoichiometry using mixed models, with nested taxonomic levels as random factors. We finally assessed the covariations in elemental composition. Results: Our database gathered 31,371 observations on 1,512 species. Body elemental composition was widely variable among species, with the four assessed drivers contributing significantly to this variation. Taxonomic group was the strongest contributor to interspecific variance for the stoichiometric traits studied, followed by habitat, diet and body mass. More precisely, C, N and P contents and C:N ratio were generally structured among classes, whereas the largest variations in C:P and N:P ratios were among families. This resulted in a significant but relatively modest phylogenetic signal. Finally, we found significant covariation among the three body elemental contents, resulting in taxonomic group- specific C:N:P spectra. Main conclusions: Our global synthesis of body stoichiometry of heterotrophs revealed a strong interspecific variability that was only modestly explained by the species attributes investigated (body mass, habitat and diet). It also revealed that this taxonomically structured residual variation in body stoichiometry seemed to be constrained along taxonomic group- specific elemental spectra. [ABSTRACT FROM AUTHOR]

PREMISE: With over 1500 species, the globally distributed Vernonieae is one of the most successful members of the largest family of flowering plants, the Compositae. However, due to its morphological complexity and limited geographic representation in previous studies, subtribal and biogeographic relationships are unclear. Here, new DNA sequence data spanning the geographic range of the tribe provides a taxonomically robust time‐calibrated phylogeny, estimates migration pathways and timing of important biogeographic events, and allows inference of environmental factors that have contributed to the success of the Vernonieae worldwide. METHODS: Phylogenetic relationships were estimated for 368 taxa representing all Vernonieae subtribes. Molecular clock and ancestral range estimation analyses provide a framework for inference of the biogeographic history of the tribe. RESULTS: Relationships among the subtribes were established and correct placement determined for problematic taxa, along with the first model‐based assessment of the biogeographic history of the tribe. The Vernonieae were estimated to have evolved ~50 mya. Africa was the first center of diversity, from which a single dispersal event established the monophyletic New World lineage. Long‐distance dispersal from Africa and Brazil established the tribe on five continents and Oceania. CONCLUSIONS: The New World lineage is monophyletic, but Old World taxa are not. New subtribal taxonomies are needed. Moquinieae are nested in Vernonieae. Long‐distance dispersal from Africa beginning 45 mya was key to establishing the tribe's near‐global distribution. Migration corridors created by volcanic mountain chains and iron‐rich soils in Africa and the Americas promoted radiation and range expansion. [ABSTRACT FROM AUTHOR]

The role of biotic interactions in shaping species distributions is a cornerstone of biogeographic theory; yet, it remains elusive. Such interactions are more likely to have an influence on organisms with obligate associations, such as hosts and their parasites. Whereas abiotic conditions may affect the abundance and distribution of parasites in ways similar to free‐living species, attributes of the host could also play a part.Here, we focus on parasitic water mites and their dragonfly and damselfly hosts, and use a hierarchical Bayesian model to examine the relative influence of the abiotic environment and biotic factors such as local host community structure and individual host characteristics on parasite intensity along a broad‐scale environmental gradient. Specifically, we assessed how climate, surrounding vegetation, water chemistry, host community structure as well as the relative abundance and body mass of host species affected the intensity of parasitism on individual hosts along a latitudinal gradient.We found that water chemistry and body mass of the host were the best predictors of variation in parasite intensity among hosts. High parasite intensity was observed in hosts sampled from lakes with high pH, dissolved oxygen and conductivity. Additionally, we found that the intensity of parasitism was strongly influenced by host species identity. In particular, body mass, which shows strong phylogenetic signal, was negatively related to parasite intensity. It may be that larger species, or individuals within species, are more immune to high level of parasitism and/or body mass is correlated with other traits of the host which relate to immunity.Considering both the abiotic environment and attributes of host species is necessary to understand why certain host individuals and locations exhibit more intense parasitism. Amid widespread decline of insect populations world‐wide, some of which are attributed to pathogens and parasites, models predicting rates of parasitism in space and time could become an essential tool for guiding management and conservation efforts. A free Plain Language Summary can be found within the Supporting Information of this article. [ABSTRACT FROM AUTHOR]

Polymorphid acanthocephalans are parasites of marine mammals, waterfowl and ichthyophagous birds. Among these, the genus Profilicollis is known to use exclusively decapods as intermediate hosts. Here, we report the first record of living cystacanths of Profilicollis parasitizing the body cavity of a fish host, Oligosarcus jenynsii, inhabiting the freshwater section of an estuarial system, Mar Chiquita coastal lagoon, in south-east Buenos Aires Province, Argentina. In this environment, cystacanths of Profilicollis chasmagnathi have been previously recorded infecting decapod crabs and as transient accidental infections in the gut of some carcinophagous fishes. In the present study, larvae from the crab Neohelice granulata, from the intestine of the estuarine fish Odontesthes argentinensis and from the body cavity of O. jenynsii were morphologically and genetically compared, confirming their identity as P. chasmagnathi, a species characteristic of estuaries and marine coasts along Argentina, Uruguay and Chile. These findings can be interpreted as a possible case of incipient paratenicity for Profilicollis, and a colonization event of freshwater habitats, probably promoted by the highly variable conditions, typical of ecotonal environments. In addition, cystacanths of the genus Polymorphus were also found in O. jenynsii, representing the first record of this genus in Oligosarcus from Argentina. [ABSTRACT FROM AUTHOR]

Hydraulic properties control plant responses to climate and are likely to be under strong selective pressure, but their macro‐evolutionary history remains poorly characterised. To fill this gap, we compiled a global dataset of hydraulic traits describing xylem conductivity (Ks), xylem resistance to embolism (P50), sapwood allocation relative to leaf area (Hv) and drought exposure (ψmin), and matched it with global seed plant phylogenies. Individually, these traits present medium to high levels of phylogenetic signal, partly related to environmental selective pressures shaping lineage evolution. Most of these traits evolved independently of each other, being co‐selected by the same environmental pressures. However, the evolutionary correlations between P50 and ψmin and between Ks and Hv show signs of deeper evolutionary integration because of functional, developmental or genetic constraints, conforming to evolutionary modules. We do not detect evolutionary integration between conductivity and resistance to embolism, rejecting a hardwired trade‐off for this pair of traits. [ABSTRACT FROM AUTHOR]

Aim: The sorting of functional traits along environmental gradients is an important driver of community and landscape scale patterns of functional diversity. However, the significance of environmental factors in driving functional gradients within biomes and across continents remains poorly understood. Here, we evaluate the relationship of soil nutrients and climate to leaf traits in grasses (Poaceae) that are hypothesized to reflect different strategies of resource use along gradients of resource availability. Location: Global. Taxon: Poaceae. Methods: We made direct measurements on herbarium specimens to compile a global dataset of functional traits and realized environmental niche for 279 grass species that are common in grassland and savanna biomes. We examined the strength and direction of correlations between pairwise trait combinations and measured the distribution of traits in relation to gradients of soil properties and climate, while accounting for phylogenetic relatedness. Results: Leaf trait variation among species follows two orthogonal axes. One axis represents leaf size and plant height, and we showed positive scaling relationships between these size‐related traits. The other axis corresponds to economic traits associated with resource acquisition and allocation, including leaf tensile strength (LTS), specific leaf area (SLA) and leaf nitrogen content (LNC). Global‐scale variation in LNC was primarily correlated with soil nutrients, while LTS, SLA and size‐related traits showed weak relationships to environment. However, most of the trait variation occurred within different vegetation types, independent of large‐scale environmental gradients. Main conclusions: Our work provides evidence among grasses for relationships at the global scale between leaf economic traits and soil fertility, and for an influence of aridity on traits related to plant size. However, large unexplained variance and strong phylogenetic signal in the model residuals imply that at this scale the evolution of functional traits is driven by factors beyond contemporary environmental or climatic conditions. [ABSTRACT FROM AUTHOR]

Background and aims: The drivers of variations in leaf nutrient concentrations in cave-dwelling plants remain poorly understood. We aimed to explore the effects of light, soil chemistry and phylogeny on leaf nutrient concentrations in cave-dwelling plants. Methods: We quantified light availability and sampled top-soils and leaves of the co-existing herbs and ferns in three caves. We used the traditional and phylogenetic comparative methods to determine the effects of light, soil chemistry and phylogeny on leaf nutrient concentrations and the cross-species correlations between leaf nutrients. Results: Leaf nutrient concentrations differed little among caves due to the non-significant relationships of leaf nutrient concentrations with light availability and soil nutrient concentrations across caves. The phylogenetic signals in leaf nutrient concentrations were significant for Ca, Mg and N but non-significant for the remaining nutrients. The evolutionary rates of leaf nutrient concentrations tended to increase with decreasing phylogenetic signals and were faster in herbs than ferns. These contrasting degrees of phylogenetic conservatism in leaf nutrient concentrations were best generated by Ornstein-Uhlenbeck models, i.e., stabilizing selection towards an optimum across species for P, K, S, Fe, Mn and Zn or higher optimal concentrations in herbs than ferns for Ca, Mg and N. Strong cross-species correlations between leaf nutrient concentrations such as Ca vs Mg and N vs P were found. Conclusions: Leaf nutrient concentrations in cave-dwelling plants showed convergent adaptations to cave environments and presented contrasting degrees of phylogenetic conservatism to produce leaf nutritional diversity for the co-existing herbs and ferns in caves. [ABSTRACT FROM AUTHOR]

Phenotypes are the target of selection and affect the ability of organisms to persist in variable environments. Phenotypes can be influenced directly by genes and/or by phenotypic plasticity. The amphibian‐killing fungus Batrachochytrium dendrobatidis (Bd) has a global distribution, unusually broad host range, and high genetic diversity. Phenotypic plasticity may be an important process that allows this pathogen to infect hundreds of species in diverse environments. We quantified phenotypic variation of nine Bd genotypes from two Bd lineages (Global Pandemic Lineage [GPL] and Brazil) and a hybrid (GPL‐Brazil) grown at three temperatures (12, 18 and 24°C). We measured five functional traits including two morphological traits (zoospore and zoosporangium sizes) and three life history traits (carrying capacity, time to fastest growth and exponential growth rate) in a phylogenetic framework. Temperature caused highly plastic responses within each genotype, with all Bd genotypes showing phenotypic plasticity in at least three traits. Among genotypes, Bd generally showed the same direction of plastic response to temperature: larger zoosporangia, higher carrying capacity, longer time to fastest growth and slower exponential growth at lower temperatures. The exception was zoospore size, which was highly variable. Our findings indicate that Bd genotypes have evolved novel phenotypes through plastic responses to temperature over very short timescales. High phenotypic variability likely extends to other traits and may facilitate the large host range and rapid spread of Bd. [ABSTRACT FROM AUTHOR]

Pollination niches are important components of ecological niches and have played a major role in the diversification of Angiosperms. In this study, we focused on Euro‐Mediterranean orchids, which use diverse pollination strategies and interact with various functional groups of insects. In these orchids, we investigated the determinants of pollination niche breadth and overlap by analysing the orchid–pollinator network and the factors that may have shaped it.We constructed a database reporting 1,278 interactions between 243 orchid and 773 pollinator species based on a thorough literature review. We then focused on 153 orchid species for which phylogenetic data were available. We used Bayesian phylogenetic mixed models to study the relationship between specialisation (as estimated by the degree and degree in the projected network), pollination strategy and breadths of orchids' spatial and temporal distributions, while correcting for the effect of phylogenetic relationships among orchid species and sampling effort. We then used a singular value decomposition of the orchid–pollinator matrix combined to a redundancy and variation partitioning analyses to investigate the determinants of similarity in pollination niches between orchids.Specialisation was higher in deceptive than in nectar‐producing orchids and decreased with the breadth of orchids' spatial distribution. When interactions were considered at the insect family level, similarity in pollination niches between orchids was solely explained by their pollination strategy and phylogeny. By contrast, when they were considered at the insect species level, this similarity was primarily explained by their geographical range and flowering time, although other factors had significant effects as well, with orchids using the same pollination strategy, being closely related and growing in the same habitats sharing more insect species than expected.Synthesis. Specialisation in orchid–pollinator interactions depends on orchids' pollination strategy and geographical range. The pool of insect families with which orchids interact depends on their pollination strategy and phylogeny, with consistent associations between some functional or phylogenetic groups of orchids and some families of pollinators. By contrast, the pool of insect species with which orchids interact depends on their spatio‐temporal distribution, suggesting that at a finer scale, orchid–pollinator interactions are more opportunistic than previously thought. Pollination interactions are important components of ecological niches. Here, we investigate the determinants of pollination niche breadth and overlap in Euro‐Mediterranean orchids. We show that specialisation in pollination interactions depends on orchids' pollination strategy and geographical range, and that orchids using the same strategy, being closely related, growing in the same habitats and having overlapping distributions have similar pollination niches (© Curtis). [ABSTRACT FROM AUTHOR]

The Botryosphaeriales, and in particular the Botryosphaeriaceae, are a well-studied group of fungi best known for the canker diseases they cause on woody hosts especially in stressed or damaged trees. Australian Plant Pathology herbaria contain many records for this group, but due to considerable taxonomic changes over the past decade, many of the species names have since been reclassified. In this article we used all published records with available sequence data of the Botryosphaeriaceae in Australia to examine the distribution and host range of these taxa. There are 24 genera encompassing 222 species in the Botryosphaeriaceae; 9 genera and 62 species have been recorded in Australia. Some genera such as Neoscytalidium are only found in warm, humid climates while Dothiorella species are more common in temperate climates. There were species, such as Lasiodiplodia theobromae, Neofusicoccum parvum and Botryosphaeria dothidea, which had a wide host range with many records. However, there were also several species found only in one location on a single host. While systematic data collection is still required, the information presented here provides a baseline of species present in Australia and will underpin future studies into this group of important pathogens. [ABSTRACT FROM AUTHOR]

Understanding the influence of evolutionary history on species-specific phenological events of high-altitude plants and their sensitivity to the abiotic factors has gained importance mainly in the context of climate change. However, the majority of phenology studies across altitudinal gradient are carried out on flowering, whereas other reproductive phenology events are seldom considered. We tested the role of abiotic factors and evolutionary history on the reproductive phenology traits of high-altitude Rhododendron community which comprised of 10 locally aggregated species in Kyongnosla Alpine Sanctuary, Sikkim Himalaya. The study was carried out from 2013 to 2015 across an altitude gradient of 3400-4230 m a.s.l. We generated dated phylogenetic hypotheses to test for phylogenetic signal in reproductive phenology events, and its durations across 10 Rhododendron species and also among groups of species distributed at every 100 m altitude. Comparative phylogenetic methods were used to explore the relationship between phenology traits and abiotic variables such as daylength and temperature. The early phenology events such as budding, flowering, and initial fruiting, which occurred during the favorable month of the year, exhibited strong phylogenetic signal and were mainly associated with daylength and temperature. In contrast, the later events such as immature fruiting, mature fruiting, and fruit dehiscence, which occurred during the later months of the year, showed a weak phylogenetic signal and were mostly associated with daylength. With the increase in altitude, we found a decreasing trend of phylogenetic signal for the early phenology events and later events did not show a significant trend. Our results suggest that only early events are constrained by evolutionary history; thus, the closely related species share the similar timing of the early phenology events. Also, the role of shared evolutionary history in phenological trait sensitivity to the abiotic factors reduces from early to the late phenology events. This approach can be extended to other representative plant families of the Himalayan region to better understand the response of reproductive traits to abiotic factors in deep evolutionary time. [ABSTRACT FROM AUTHOR]

Abstract: Because perennial herbs of temperate climates develop their above‐ground parts every year anew, their success critically depends on the timing and speed of this growth (growth phenology). These parameters can play a role in species coexistence and may differ along environmental gradients. Still, we know little about them, as most phenological data come from observations of flowering and to a lesser degree leafing onset. We collected data on growth phenology of about 400 perennial herbs in a botanical garden to make the results independent of local differences in climatic drivers as much as possible. Using these data, we determined species‐specific parameters of Day of peak growth, Day of maturity and two types of growth rates associated with the change in plant size. Environmental conditions in which these species occur in the field were assessed using Ellenberg indicator values, which express species’ optima along gradients of moisture, nutrients and temperature. Both timing and speed of growth estimated in the common garden were affected by light and moisture conditions of the habitats where the species typically occur. All parameters showed phylogenetic conservatism. We identified two relationships among these parameters of growth phenology: (1) species with early peak growth had high relative growth rates in contrast to late species; (2) tall species showed later peak growth than short species. The first relationship is associated with survival under forest canopy, where species are selected to grow early and fast before trees leaf out, which restricts their size. The latter is associated with (asymmetric) competition for light in open habitats, where the main selection factor is for tall stature, which cannot be attained early in the season. Synthesis. We show that large differences in size growth dynamics among herbaceous species are constrained by a few key trade‐offs involving height at maturity, rate of growth and time when maximum height is attained. These trade‐offs correspond to major selective forces acting on herbaceous plants in temperate climates. [ABSTRACT FROM AUTHOR]

Wood anatomical traits have been historically used as a climate inference tool. During the last 20 years, the use of more formal statistical approaches has allowed the field to start moving from general qualitative paleoclimate inference to quantitative estimates. These estimates are derived from the correlation between wood anatomical traits and climate, however the role of shared evolutionary history in this relationship has not been assessed. Greater influence of phylogenetic relatedness on trait variation (phylogenetic conservatism) would entail a reduction of wood trait variation due to environmental convergence, the central premise of the paleoclimate inference approach using fossil wood. Here, we analyzed the role of phylogenetic relatedness in the relationship between wood anatomical traits and climate. We also assessed the strength of phylogenetic signal in wood traits and climate preferences, as well as their most likely mode of evolution. Although we found similar trends in the phylogenetically uninformed and informed regressions, the fit of the latter models was better for every trait. We also found moderate but significant non-random phylogenetic signal in all traits but potential hydraulic conductivity and vulnerability index. Our results suggest that despite adaptive evolution is driving the relationship between wood anatomy and climate, a significant role of phylogenetic signal indicates that paleoclimate estimates using fiber and vessel traits are subject to broader errors than initially anticipated. [ABSTRACT FROM AUTHOR]

[Display omitted] • Addition of phosphate-solubilizing bacteria (PSB) affected functional redundancy. • PSB addition notably enhanced available phosphorus from 0.29 to 0.89 to 0.49–1.39 g kg−1. • Large shifts in abiotic and biotic properties during chicken manure composting. • Elevated phylogenetic conservatism and stochasticity in response to PSB addition. • Nutrient-cycling functional gene diversity can mirror compost phosphorus turnover. Elucidating ecological mechanism underlying phosphorus transformation mediated by phosphate-solubilizing bacteria (PSB) during manure composting is an important but rarely investigated subject. The research objective is to disentangle ecological functions of the inoculation of PSB Pseudomonas sp. WWJ-22 during chicken manure composting based on gene quantification and amplicon sequencing. There are large dynamic changes in phosphorus fractions, gene abundances, and bacterial community structure. The PSB addition notably increased available phosphorus from 0.29–0.89 g kg−1 to 0.49–1.39 g kg−1 and significantly affected phosphorus fractionation. The PSB inoculation significantly affected composition of nutrient-cycling functional genes (NCFGs), and notably influenced bacterial community composition and function. Compost bacteria showed significant phylogenetic signals in response to phosphorus fractions, and stochastic processes dominated bacterial community assembly. Results emphasized that PSB addition increased functional redundancy, phylogenetic conservatism, and stochasticity-dominated assembly of bacterial community. Overall, findings highlight NCFG diversity can be a bio-indicator to mirror phosphorus transformation. [ABSTRACT FROM AUTHOR]

Tropical forest loss can drive the extinction of forest-dependent species. Yet, non-forest species can proliferate in deforested landscapes, thus enabling community-level attributes (e.g. total abundance and richness) to be maintained in the remaining forest patches. Such compensatory dynamics have been, however, poorly investigated regarding the phylogenetic dimension of species diversity. Here, we assessed whether compensatory dynamics can stabilize the phylogenetic richness, divergence and structure of bird communities in response to forest loss in two regions in the Brazilian Atlantic forest, each under with different levels of land use intensification., We surveyed birds in 40 forest sites, and assessed the response of five phylogenetic metrics to forest cover measured in local (600-m radius) landscapes. We separately assessed the entire community, forest-dependent and non-forest-dependent species and used information-theoretic criteria to assess the effect of forest cover on each response variable. In particular, we evaluated the plausibility of four models: a null model (no effect of forest cover), a linear model, a power law model (nonlinear effect) and an analysis of covariance model (to assess whether the effect of forest cover differed between regions)., Forest cover varied from 7% to 98%, and was positively related to the phylogenetic richness of forest-dependent species, but negatively related to the phylogenetic richness and divergence of non-forest birds, particularly in the more disturbed region. As consequence, the phylogenetic richness and divergence of the entire community were weakly related to forest cover., Forest birds were less phylogenetically clustered in sites surrounded by lower forest cover, but the phylogenetic structure of non-forest birds was independent of forest cover., Synthesis and applications. The phylogenetic impoverishment of forest-dependent birds is offset by the phylogenetic enrichment and divergence of non-forest-dependent birds in severely tropical deforested landscapes. These compensatory dynamics suggest that both bird groups are important for safeguarding bird evolutionary diversity in human-modified landscapes. Although deforested landscapes are reservoirs of bird phylogenetic diversity, suggesting that ecosystem functioning may be maintained in these sites, preventing further deforestation is urgently needed to preserve forest birds and their key ecological roles in the ecosystem. [ABSTRACT FROM AUTHOR]

Aim To test for the phylogenetic conservatism of geographic range size and to explore the effect of the environment on this potential conservatism. Location The western Tethys Ocean and its surroundings (present-day Europe, the Middle East and North Africa) during the early Pliensbachian (Early Jurassic). Methods Using 104 localities and 1,765 occurrences of ammonite species, we estimated geographic range sizes using the extent of occurrence and the latitudinal range. The phylogenetic conservatism of range sizes was tested using Moran's I index which measures phylogenetic autocorrelation, and Pagel's λ which indicates whether a phylogeny correctly predicts covariance patterns among taxa on a given trait according to a Brownian evolution model. We conducted these analyses for two neighbouring provinces with contrasting environmental features (Mediterranean and Northwest European). We also explored scale effects by considering the whole western Tethys and two temporal resolutions (chronozone and sub-stage). Results A marked difference in phylogenetic signal is observed between Mediterranean ( MED) and Northwest European ( NWE) species; the range size of MED species is more frequently phylogenetically conserved than that of NWE species. No phylogenetic conservatism of species range size is observed during the last chronozone of the early Pliensbachian which is characterized by numerous palaeoclimatic and palaeoenvironmental changes. Main conclusions Species range size may be partly determined by phylogeny, but this phylogenetic conservatism is modulated by spatio-temporal environmental stability. The phylogenetic signal of species range size may be labile through time within the same lineage and may differ between contemporaneous species of the same group. This lability stems from the fact that species range size results from a complex interplay of intrinsic and extrinsic factors. [ABSTRACT FROM AUTHOR]

Aim Rarity, which is believed to influence extinction risk, can be defined in terms of local abundance, geographical range size and habitat breadth. Phylogenetic patterns in these attributes provide insight into the extent to which rarity and extinction risk are conserved during evolution and the potential for species-level heritability. We evaluated phylogenetic signal (i.e., related species resembling each other more than species drawn at random) and evolutionary conservatism (similarity among related species exceeding that expected from a Brownian model of evolution) in three axes of rarity (local abundance, geographical range size and habitat breadth) among species in a regional pool of tropical woody plants. Location The Madidi region in Bolivia. Time period 2001-2010. Major taxa studied Lignophyta clade. Methods We used a network of 48 1-ha forest plots and 442 0.1-ha forest plots to measure local abundance and habitat breadth of 1,700+ woody plant species (from 100+ plant families). We estimated geographical range size from occurrence records of individual species across the Neotropics. We characterized overall phylogenetic patterns of rarity using Blomberg's K and applied variance partitioning among taxonomic levels, as well as disparity analysis, to describe patterns of trait distribution at different depths in the phylogeny. Results We found phylogenetic signal, but not evolutionary conservatism, in the three axes of rarity. The variance in rarity among supra-specific taxa, particularly families and genera, exceeded that calculated from random draws of species from the Madidi region. Phylogenetic signal, estimated by the proportion of variance among supra-specific taxonomic levels, varied between 23 and 36% for local abundance and geographical range size, and between 9 and 10% for habitat breadth. Main conclusions The regional pool of woody plant species in Madidi exhibits phylogenetic signal in rarity that is consistent with biologically significant species-level heritability. [ABSTRACT FROM AUTHOR]

Although arbuscular mycorrhizal ( AM) fungi are obligate symbionts that can influence plant growth, the magnitude and direction of these effects are highly variable within fungal genera and even among isolates within species, as well as among plant taxa., To determine whether variability in AM fungal morphology and growth is correlated with AM fungal effects on plant growth, we established a common garden experiment with 56 AM fungal isolates comprising 17 genera and six families growing with three plant host species., Arbuscular mycorrhizal fungal morphology and growth was highly conserved among isolates of the same species and among species within a family. By contrast, plant growth response to fungal inoculation was highly variable, with the majority of variation occurring among different isolates of the same AM fungal species., Our findings show that host performance cannot be predicted from AM fungal morphology and growth traits. Divergent effects on plant growth among isolates within an AM fungal species may be caused by coevolution between co-occurring fungal and plant populations. [ABSTRACT FROM AUTHOR]