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Sympatric species are known to host the same parasites species. Nevertheless, surveys examining parasite assemblages in sympatric species are rare. To understand how parasite assemblages in sympatric host species differ in a given locality, we used a noninvasive identification method based on high-throughput sequencing. We collected fecal samples from sympatric species in Ranomafana National Park, Madagascar, from September to December in 2010, 2011, and 2012 and identified their parasites by metabarcoding, sequencing a region of the small ribosomal subunit (18S) gene. Our survey included 11 host species, including endemic primates, rodents, frogs, gastropods, and nonendemic rats and dogs. We collected 872 samples, of which 571 contained nematodes and 249 were successfully sequenced. We identified nine putative species of parasites, although their correspondence to actual parasite species is not clear as the resolution of the marker gene differs between nematode clades. For the host species that we successfully sampled with 10 or more positive occurrences of nematodes, i.e., mouse lemurs (Microcebus rufus), black rats (Rattus rattus), and frogs (Anura), the parasite assemblage compositions differed significantly among host species, sampling sites, and sampling years. Our metabarcoding method shows promise in interrogating parasite assemblages in sympatric host species and our results emphasize the importance of choosing marker regions for parasite identification accuracy.

The unified neutral theory of biodiversity and biogeography has gained the status of a quantitative null model for explaining patterns in ecological (meta)communities. The theory assumes that individuals of trophically similar species are functionally equivalent. We empirically evaluate the relative contribution of neutral and deterministic processes in shaping fruit‐feeding butterfly assemblages in three tropical forests in Africa, using both direct (confronting the neutral model with species abundance data) and indirect approaches (testing the predictions of neutral theory using data other than species abundance distributions). Abundance data were obtained by sampling butterflies using banana baited traps set at the forest canopy and understorey strata. Our results indicate a clear consistency in the kind of species or species groups observed at either the canopy or understorey in the three studied communities. Furthermore, we found significant correlation between some flight‐related morphological traits and species abundance at the forest canopy, but not at the understorey. Neutral theory's contribution to explaining our data lies largely in identifying dispersal limitation as a key process regulating fruit‐feeding butterfly community structure. Our study illustrates that using species abundance data alone in evaluating neutral theory can be informative, but is insufficient. Species‐level information such as habitat preference, host plants, geographical distribution, and phylogeny is essential in elucidating the processes that regulate biodiversity community structures and patterns.

Summary Understanding the responses of individual plant species along different edaphic gradients is a key question in ecology, with implications to community assembly, functioning of forest ecosystems, niche theory, and conservation planning. In tropical rain forests, responses to soil nutrients have been described only for a handful of species. Even abundant and conspicuous components of the forest, such as the palms (Arecaceae), are largely unknown in this respect. We inventoried all palm species and analysed soil chemistry in 96 sites across western Amazonia to (i) assess the relative importance of some micronutrients vs. macronutrients as drivers of patterns in palm species composition, (ii) model the response shapes of 61 palm taxa and of canopy vs. understory palms along gradients of selected soil nutrients, (iii) determine if the response shapes of conspecific palm varieties differ in relation to the most important observed soil nutrient, and (iv) assess if the rank-order of the most abundant canopy species changes along edaphic gradients. Patterns in palm species composition were best explained by Mehlich-III extractable exchangeable bases (Ca, K, Mg) and phosphorus (P), with the different palm species clearly separating along the soil cation concentration gradient. All 61 palm taxa exhibited statistical responses along soil nutrient gradients. Response shapes in relation to exchangeable bases varied among bimodal skewed (51% of species), unimodal skewed (47%), and monotonic (2%). There were no significant differences between canopy vs. understory species in their mean response shapes to the exchangeable bases, but canopy species had significantly higher mean optimum value for soil P and greater mean niche width along the Ca, K, Mg, P, and boron (B) gradients. Varieties of the same species of Bactris, Desmoncus and Geonoma generally had different response shapes and different optima for the exchangeable bases. Synthesis: Among the soil variables we studied, macronutrients (especially exchangeable bases and P) emerged as more important than micronutrients in predicting species abundances in palm communities of western Amazonian non-inundated forests. Non-gaussian responses were predominant, conspecific palm varieties exhibited different response types, and the rank-order of dominance of canopy palms varied along the gradients of exchangeable bases and P. Together, these findings advance niche theory about palms and may be used for generating better predictive models of palm species distributions and for experimental studies that search for the physiological mechanisms underlying inter- and infra-specific trade-offs along edaphic gradients. This article is protected by copyright. All rights reserved.

Beyond broad‐scale investigations of species diversity and abundance, there is little information on how land conversion in the tropics is affecting the behavior and demographics of surviving species. To fill these knowledge gaps, we explored the effects of land‐use change on the ecologically important and threatened bearded pig (Sus barbatus) over seven years in Borneo. Random placement of camera traps across a land‐use gradient of primary forest, logged forest, and oil palm plantations (32,542 trap nights) resulted in 2,303 independent capture events. Land‐use was associated with changes in the age structure and activity patterns of photographed individuals, alongside large changes in abundance shown previously. The proportion of adults recorded declined from 92% in primary forests to 76% in logged forests, and 67% in plantations, likely indicating increased fecundity in secondary forests. Activity level (capture rate) did not vary, but activity patterns changed markedly, from diurnal in primary forests, crepuscular in logged forests, to nocturnal in plantations. These changes corresponded with avoidance of diurnal human activity and may also protect bearded pigs from increased thermal stress in warmer degraded forests. The percentage of adult captures that were groups rather than individuals increased five‐fold from primary forests (4%) to logged forests (20%), possibly due to increased mating or in response to perceived threats from indirect human disturbance. We recommend further investigation of the demographic and behavioral effects of land‐use change on keystone species as altered population structure, activity patterns, and social behavior may have knock‐on effects for entire ecosystems.

Half of Borneo's forest has been logged and oil palm plantations have replaced millions of hectares of forest since the 1970's. While this extensive land-use change has been shown to reduce species richness across landscapes, there is limited current knowledge on how deforestation affects the spatial arrangement of ecological communities. Identifying responses of beta-diversity to land-use change may reveal processes which could mitigate total biodiversity loss. We sampled weevils (superfamily: Curculionoidea) at multiple spatial scales across a land-use gradient at the Stability of Altered Forest Ecosystems (SAFE) Project in Sabah, Malaysia, in 2011–2012. We caught 160 taxa of weevil and calculated the response of alpha-diversity (1-ha scale) and beta-diversity (10-, 100-, and 1000-ha scales) to disturbance. Alpha-diversity of weevils was greatest in unlogged forest but landscape-level beta-diversity (100- and 1000-ha scale) was maintained across logged and unlogged due to high rates of spatial turnover. Turnover at smallest spatial scales (10-ha) in unlogged forest was highest in rough, flat terrain but smooth, sloping terrain had highest turnover in logged forest. Logging of flat terrain at small spatial scales has potential to decrease beta-diversity at greater scales. Beta-diversity at landscape-level in oil palm plantation remained high but was propagated by abundance shifts of few species instead of spatial turnover of many species. High temporal beta-diversity in unlogged forest was evident through periodic fluxes in abundance of many weevil species. We conclude that unlogged forest is irreplaceable for high beetle biodiversity but increased spatial turnover in some terrains may help conserve beetle communities in heavily-degraded landscapes.

Climatic changes have profound effects on the distribution of biodiversity, but untangling the links between climatic change and ecosystem functioning is challenging, particularly in high diversity systems such as tropical forests. Tropical forests may also show different responses to a changing climate, with baseline climatic conditions potentially inducing differences in the strength and timing of responses to droughts. Trait-based approaches provide an opportunity to link functional composition, ecosystem function and environmental changes. We demonstrate the power of such approaches by presenting a novel analysis of long-term responses of different tropical forest to climatic changes along a rainfall gradient. We explore how key ecosystem's biogeochemical properties have shifted over time as a consequence of multi-decadal drying. Notably, we find that drier tropical forests have increased their deciduous species abundance and generally changed more functionally than forests growing in wetter conditions, suggesting an enhanced ability to adapt ecologically to a drying environment.

Logged tropical forests represent a major opportunity for preserving biodiversity and sequestering carbon, playing a large role in meeting global forest restoration targets. Left alone, these ecosystems have been expected to undergo natural regeneration and succession towards old growth forests, but extreme drought events may challenge this process. While old growth forests possess a certain level of resilience, we lack understanding as to how logging may affect forest responses to drought. This study examines the drought–logging interaction in seedling dynamics within a landscape of logged and unlogged forests in Sabah Malaysia, based on 73 plots monitored before and after the 2015-16 El Niño drought. Drought increased seedling mortality in all forests, but the magnitude of this impact was modulated by logging intensity, with forests with lower canopy leaf area index (LAI) and above ground biomass (AGB) experiencing greater drought induced mortality. Moreover, community traits in more heavily logged forests shifted towards being more ruderal after drought, suggesting that the trajectory of forest succession had been reversed. These results indicate that with reoccurring strong droughts under a changing climate, logged forests that have had over half of their biomass removed may suffer permanently arrested succession. Targeted management interventions may therefore be necessary to lift the vulnerable forests above the biomass threshold.

Vast areas of degraded tropical forest, combined with increasing interest in mitigating climate change and conserving biodiversity, demonstrate the potential value of restoring tropical forest. However, there is a lack of long-term studies assessing active management for restoration. Here we investigate Above Ground Biomass (AGB), forest structure, and biodiversity, before degradation (in old-growth forest), after degradation (in abandoned agricultural savanna grassland), and within a forest that is actively being restored in Kibale National Park, Uganda. In 1995 degraded land in Kibale was protected from fire and replanted with native seedlings (39 species) at a density of 400 seedlings ha(-1). Sixty-five plots (50 m x 10 m) were established in restoration areas in 2005 and 50 of these were re-measured in 2013, allowing changes to be assessed over 18 years. Degraded plots have an Above Ground Biomass (AGB) of 5.1 Mg dry mass ha(-1), of which 80% is grass. By 2005 AGB of trees >= 10 cm DBH was 9.5 Mg ha(-1), increasing to 40.6 Mg ha(-1) by 2013, accumulating at a rate of 3.9 Mg ha(-1) year(-1). A total of 153 planted individuals ha(-1) (38%) remained by 2013, contributing 28.9 Mg ha(-1) (70%) of total AGB. Eighteen years after restoration, AGB in the plots was 12% of old-growth (419 Mg ha(-1)). If current accumulation rates continue restoration forest would reach old-growth AGB in a further 96 years. Biodiversity of degraded plots prior to restoration was low with no tree species and 2 seedling species per sample plot (0.05 ha). By 2005 restoration areas had an average of 3 tree and 3 seedling species per sample plot, increasing to 5 tree and 9 seedling species per plot in 2013. However, biodiversity was still significantly lower than old-growth forest, at 8 tree and 16 seedling species in an equivalent area. The results suggest that forest restoration is beneficial for AGB accumulation with planted stems storing the majority of AGB. Changes in biodiversity appear slower; possibly due to low stem turnover. Overall this restoration treatment is an effective means of restoring degraded land in the area, as can be seen from the lack of regeneration in degraded plots, which remain low-AGB and diversity, largely due to the impacts of fire and competition with grasses. (C) 2016 The Authors. Published by Elsevier B.V.

Land-use change occurs nowhere more rapidly than in the tropics, where the imbalance between deforestation and forest regrowth has large consequences for the global carbon cycle(1). However, considerable uncertainty remains about the rate of biomass recovery in secondary forests, and how these rates are influenced by climate, landscape, and prior land use(2-4). Here we analyse aboveground biomass recovery during secondary succession in 45 forest sites and about 1,500 forest plots covering the major environmental gradients in the Neotropics. The studied secondary forests are highly productive and resilient. Aboveground biomass recovery after 20 years was on average 122 megagrams per hectare (Mg ha(-1)), corresponding to a net carbon uptake of 3.05 Mg C ha(-1) yr(-1), 11 times the uptake rate of old-growth forests. Aboveground biomass stocks took a median time of 66 years to recover to 90% of old-growth values. Aboveground biomass recovery after 20 years varied 11.3-fold ( from 20 to 225 Mg ha(-1)) across sites, and this recovery increased with water availability (higher local rainfall and lower climatic water deficit). We present a biomass recovery map of Latin America, which illustrates geographical and climatic variation in carbon sequestration potential during forest regrowth. The map will support policies to minimize forest loss in areas where biomass resilience is naturally low (such as seasonally dry forest regions) and promote forest regeneration and restoration in humid tropical lowland areas with high biomass resilience.

African tropical ecosystems and the services they provide to human society suffer from an increasing combined pressure of land use and climate change. How individual tropical tree species respond to climate change remains relatively unknown. In this study, we refined the species characterization in the CARAIB (CARbon Assimilation In the Biosphere) dynamic vegetation model by replacing plant functional type morpho-physiological traits by species-specific traits. We focus on 12 tropical tree species selected for their importance in both the plant community and human society. We used CARAIB to simulate the current species net primary productivity (NPP), biomass and potential distribution and their changes in the future. Our results indicate that the use of species-specific traits does not necessarily result in an increase of predicted current NPPs. The model projections for the end of the century highlight the large uncertainties in the future of African tropical species. Projected changes in species distribution vary greatly with the general circulation model (GCM) and, to a lesser extent, with the concentration pathway. The question about long-term plant response to increasing CO2 concentrations also leads to contrasting results. In absence of fertilization effect, species are exposed to climate change and might lose 25% of their current distribution under RCP8.5 (12.5% under RCP4.5), considering all the species and climatic scenarios. The vegetation model projects a mean biomass loss of &minus, 21.2% under RCP4.5 and &minus, 34.5% under RCP8.5. Potential range expansions, unpredictable due to migration limitations, are too limited for offsetting range contraction. By contrast, if the long-term species response to increasing [CO2] is positive, the range reduction is limited to 5%. However, despite a mean biomass increase of 12.2%, a positive CO2 feedback might not prevent tree dieback. Our analysis confirms that species will respond differently to new climatic and atmospheric conditions, which may induce new competition dynamics in the ecosystem and affect ecosystem services.

Photoassimilate distribution inside leaves is less studied than photosynthesis, and yet the topic is important as it gives insights into the vital roles played by leaves in plant survival. We combined greenhouse measurements of light response curves with 11C-labelling using leaves of 3-year-old potted Maesopsis eminii Engl. trees to improve our understanding of its leaf carbon physiology. This fast-growing pioneer tree species showed low photosynthetic rates for a common tropical pioneer during well-watered reference conditions (5.0 ± 0.7 µmol m−2 s−1), which further decreased in response to drought. 11C-autoradiography indicated active phloem loading and/or rapid phloem transport rates. Active loading is uncommon in tree species, but might be related to deciduousness traits and continuous investment in growth, like in herbaceous active loaders. Active loading involves higher carbon allocation to growth, which might explain why low photosynthetic rates were observed in this fast-growing species. These findings suggest that examining photoassimilate distribution and transport may be critical for understanding the role tree physiology plays in terrestrial carbon cycling.

Evapotranspiration (ET) of Amazon forests is a main driver of regional climate patterns and an important indicator of ecosystem functioning. Despite its importance, the seasonal variability of ET over Amazon forests, and its relationship with environmental drivers, is still poorly understood. In this study, we carry out a water balance approach to analyse seasonal patterns in ET and their relationships with water and energy drivers over five sub-basins across the Amazon basin. We used in-situ measurements of river discharge, and remotely sensed estimates of terrestrial water storage, rainfall, and solar radiation. We show that the characteristics of ET seasonality in all sub-basins differ in timing and magnitude. The highest mean annual ET was found in the northern Rio Negro basin (~ 1497 mm year−1) and the lowest values in the Solimões River basin (~ 986 mm year−1). For the first time in a basin-scale study, using observational data, we show that factors limiting ET vary across climatic gradients in the Amazon, confirming local-scale eddy covariance studies. Both annual mean and seasonality in ET are driven by a combination of energy and water availability, as neither rainfall nor radiation alone could explain patterns in ET. In southern basins, despite seasonal rainfall deficits, deep root water uptake allows increasing rates of ET during the dry season, when radiation is usually higher than in the wet season. We demonstrate contrasting ET seasonality with satellite greenness across Amazon forests, with strong asynchronous relationships in ever-wet watersheds, and positive correlations observed in seasonally dry watersheds. Finally, we compared our results with estimates obtained by two ET models, and we conclude that neither of the two tested models could provide a consistent representation of ET seasonal patterns across the Amazon.

Background: Understanding the patterns of biodiversity distribution and what influences them is a fundamental pre-requisite for effective conservation and sustainable utilisation of biodiversity. Such knowledge is increasingly urgent as biodiversity responds to the ongoing effects of global climate change. Nowhere is this more acute than in species-rich tropical Africa, where so little is known about plant diversity and its distribution. In this paper, we use RAINBIO - one of the largest mega-databases of tropical African vascular plant species distributions ever compiled - to address questions about plant and growth form diversity across tropical Africa. Results: The filtered RAINBIO dataset contains 609,776 georeferenced records representing 22,577 species. Growth form data are recorded for 97% of all species. Records are well distributed, but heterogeneous across the continent. Overall, tropical Africa remains poorly sampled. When using sampling units (SU) of 0.5°, just 21 reach appropriate collection density and sampling completeness, and the average number of records per species per SU is only 1.84. Species richness (observed and estimated) and endemism figures per country are provided. Benin, Cameroon, Gabon, Ivory Coast and Liberia appear as the botanically best-explored countries, but none are optimally explored. Forests in the region contain 15,387 vascular plant species, of which 3013 are trees, representing 5-7% of the estimated world's tropical tree flora. The central African forests have the highest endemism rate across Africa, with approximately 30% of species being endemic. Conclusions: The botanical exploration of tropical Africa is far from complete, underlining the need for intensified inventories and digitization. We propose priority target areas for future sampling efforts, mainly focused on Tanzania, Atlantic Central Africa and West Africa. The observed number of tree species for African forests is smaller than those estimated from global tree data, suggesting that a significant number of species are yet to be discovered. Our data provide a solid basis for a more sustainable management and improved conservation of tropical Africa's unique flora, and is important for achieving Objective 1 of the Global Strategy for Plant Conservation 2011-2020. In turn, RAINBIO provides a solid basis for a more sustainable management and improved conservation of tropical Africa's unique flora., SCOPUS: ar.j, info:eu-repo/semantics/published

Many tropical tree species have population structures that exhibit strong recruitment failure. While the presence of adult trees indicates that appropriate regeneration conditions occurred in the past, it is often unclear why small individuals are absent. Knowing how, when and where these tree species regenerate provides insights into their life history characteristics. Based on tree age distributions inferences can be made on past forest dynamics and information is obtained that is important for forest management. We used tree-ring analyses to obtain tree ages and reconstruct >200 years of estimated establishment rates in a sparsely regenerating population of Afzelia xylocarpa (Fabaceae), a light-demanding and long-lived canopy tree species. We sampled all 85 Afzelia trees >5 cm diameter at breast height (dbh) in a 297-ha plot in a seasonal tropical forest in the Huai Kha Khaeng (HKK) Wildlife Sanctuary, western Thailand. The age distribution of the sampled Afzelia trees revealed two distinct recruitment peaks centred around 1850 and 1950. The presence of distinct age cohorts provides a strong indication of disturbance-mediated recruitment. Additionally we found three lines of evidence supporting this interpretation. (1) Similarly aged trees were spatially aggregated up to ~500 m, a scale larger than single tree-fall gaps. (2) High juvenile growth rates (5–10 mm dbh year-1) of extant small and large trees indicate that recruitment took place under open conditions. (3) A significant positive correlation between tree age and local canopy height indicates that trees recruited in low-canopy forest patches. Likely causes of these severe canopy disturbances include windstorms and ground fires, which are common in the region. In addition, successful establishment seems to be favoured by wetter climate conditions, as the estimated establishment rate was correlated to the Palmer Drought Severity Index (PDSI). Thus, the co-occurrence of canopy disturbance and favourable climatic conditions may provide a window of opportunity for Afzelia establishment. Our results indicate that forest patches with occurrence of large Afzelia trees have undergone high-severity canopy disturbance prior to establishment, suggesting that these disturbances have shaped forests at HKK. Tree-ring analyses provide a powerful tool to understanding tropical tree establishment patterns. Rare, high-severity canopy disturbances may play a key role in the regeneration of long-lived tropical canopy tree species with recruitment failure, potentially in interaction with climate variability to determine variation in establishment success over decades or centuries.

Disturbances play an important role in forest dynamics across the globe. Researchers have mainly focused on the temporal context of disturbances, but have largely ignored the spatial patterns of tree recruitment they create. Geostatistical tools enable the analysis of spatial patterns and variability in tropical forest disturbance histories. Here, we examine the potential of combining dendroecological analysis and spatial statistics to reconstruct the disturbance history of a seasonal dry evergreen tropical forest plot at the Huai Kha Khaeng Wildlife Sanctuary (HKK), western Thailand. We used tree-ring-derived age estimates for 70 individuals of the shade-intolerant pioneer species Melia azederach (Meliaceae) and tree locations across a 316-ha study plot to identify the timing and spatial extent of past disturbances. Although the age distribution for Melia suggested that regeneration had been continuous over the past 60 yr, spatial analyses (mark correlation function and kriging) demonstrated the presence of three spatially discrete age cohorts. Two of these cohorts suggested a severe disturbance ~20 yr before present. A third cohort appears to have established ~50 years ago. Using historical records, we conclude that fire disturbance is the most likely disturbance factor affecting HKK. Nevertheless, we do not rule out other disturbance factors. The combined application of tree-ring analysis and spatial statistics as applied in this study could be readily applied to reconstruct disturbance histories in other tropical regions where tree species with annual growth rings are present.

South East Asia has the highest rate of lowland forest loss of any tropical region, with logging and deforestation for conversion to plantation agriculture being flagged as the most urgent threats. Detecting and mapping logging impacts on forest structure is a primary conservation concern, as these impacts feed through to changes in biodiversity and ecosystem functions. Here, we test whether high-spatial resolution satellite remote sensing can be used to map the responses of aboveground live tree biomass (AGB), canopy leaf area index (LAI) and fractional vegetation cover (FCover) to selective logging and deforestation in Malaysian Borneo. We measured these attributes in permanent vegetation plots in rainforest and oil palm plantations across the degradation landscape of the Stability of Altered Forest Ecosystems project. We found significant mathematical relationships between field-measured structure and satellite-derived spectral and texture information, explaining up to 62% of variation in biophysical structure across forest and oil palm plots. These relationships held at different aggregation levels from plots to forest disturbance types and oil palms allowing us to map aboveground biomass and canopy structure across the degradation landscape. The maps reveal considerable spatial variation in the impacts of previous logging, a pattern that was less clear when considering field data alone. Up-scaled maps revealed a pronounced decline in aboveground live tree biomass with increasing disturbance, impacts which are also clearly visible in the field data even a decade after logging. Field data demonstrate a rapid recovery in forest canopy structure with the canopy recovering to pre-disturbance levels a decade after logging. Yet, up-scaled maps show that both LAI and FCover are still reduced in logged compared to primary forest stands and markedly lower in oil palm stands. While uncertainties remain, these maps can now be utilised to identify conservation win–wins, especially when combining them with ongoing biodiversity surveys and measurements of carbon sequestration, hydrological cycles and microclimate.

Epiphytic vascular plants are common species in humid tropical forests. Epiphytes are influenced by abiotic and biotic variables, but little is known about the relative importance of direct and indirect effects on epiphyte distribution. We surveyed 70 transects (10 m × 50 m) along an elevation gradient (180 m–1521 m) and sampled all vascular epiphytes and trees in a typical tropical forest on Hainan Island, south China. The direct and indirect effects of abiotic factors (climatic and edaphic) and tree community characteristics on epiphytes species diversity were examined. The abundance and richness of vascular epiphytes generally showed a unimodal curve with elevation and reached maximum value at ca. 1300 m. The species composition in transects from high elevation (above 1200 m) showed a more similar assemblage. Climate explained the most variation in epiphytes species diversity followed by tree community characteristics and soil features. Overall, climate (relative humidity) and tree community characteristics (tree size represented by basal area) had the strongest direct effects on epiphyte diversity while soil variables (soil water content and available phosphorus) mainly had indirect effects. Our study suggests that air humidity is the most important abiotic while stand basal area is the most important biotic determinants of epiphyte diversity along the tropical elevational gradient.

Understanding of mechanisms underlying carbon flux dynamics in the Eastern Arc Mountains and their catchment areas is lacking, due to data shortage (e.g. biome specific canopy structure) and spatial heterogeneity of tropical ecosystems. This study focuses on documenting leaf area index (LAI) for the main biomes in the Eastern Arc Mountains and their surroundings. In situ optical instruments, i.e. hemispherical photography and a SunScan device, were used to acquire ground LAI measurements. Spectral vegetation indices (VIs) extracted from Landsat Enhanced Thematic Mapper (ETM +) and Systeme Probatoire d'Observation de la Terre (SPOT) reflectance data were used, along with mean annual precipitation (MAP), as explanatory variables of LAI variation. The results indicate that LAI significantly increases with increasing MAP for woody biomes. Implementing long-term MAP as a second predictor variable into the VI–LAI models significantly improved LAI predictions by up to 10% using the normalised difference vegetation index (NDVI), modified soil adjusted vegetation index (MSAVI 2) and 2-band enhanced vegetation index (EVI 2). Varying forest disturbances and agricultural management practises may have contributed to observed discrepancies of LAI with MAP across biomes. The importance of altitudinal gradients is yet to be explained fully with more study required. However, LAI appears to be higher in low-altitude forests compared to forests at higher altitudes. Our results indicate that SPOT and Landsat-derived VIs, in combination with long-term MAP, may be a suitable tool to develop landscape maps of LAI in Eastern Africa. This study also presents the in situ LAI measurements for further validation of global products for areas that are currently under-represented in Earth Observation (EO) global validation networks.

Functional diversity (FD) ‘those components of biodiversity that influence how an ecosystem operates or functions’ is a promising tool to assess the effect of biodiversity loss on ecosystem functioning. FD has received ample theoretical attention, but empirical studies are limited. We evaluate changes in species richness and FD during tropical secondary forest succession after shifting cultivation in Mexico. We also test whether species richness is a good predictor of FD. FD was calculated based on a combination of nine functional traits, and based on two individual traits important for primary production (specific leaf area) and carbon sequestration (wood density). Stand basal area was a good predictor of successional changes in diversity and FD, in contrast to fallow age. Incidence-based FD indices increased logarithmically with stand basal area, but FD weighted by species’ importance values lacked pattern with succession. Species richness and diversity are strong predictors of FD when all traits were considered; linear relationships indicate that all species are equally functionally complementary, suggesting there is little functional redundancy. In contrast, when FD was calculated for individual traits and weighted for abundances, species richness may underestimate FD. Selection of functional trait(s) critically determines FD, with large consequences for studies relating biodiversity to ecosystem functioning. Careful consideration of the traits required to capture the ecosystem process of interest is thus essential.

Competition between neighboring plants plays a major role in the population dynamics of tree species in the early phases of humid tropical forest succession. We evaluated the relative importance of above- versus below-ground competition during the first years of old-field succession on soil with low fertility in Southern Mexico, using the premise that competition for light is size-asymmetric, unlike competition for nutrients. Plant growth is thus expected to be disproportionally impeded by larger neighbors. We studied how growth and survival of 3.5–5.5 m tall saplings of Cecropia peltata and Trichospermum mexicanum, two pioneer species that dominate the secondary forests in the study region, varied with the abundance and size of neighboring trees in 1–2 year old secondary vegetation. We found that local neighborhood basal area varied 10-fold (3 to 30 cm2 m-2) and explained most of the variation in diameter and height growth of the target saplings. Most growth variables were strongly affected by the neighbors bigger than the focal trees with no significant additive effect of the smaller neighbors, indicating asymmetric competition. Smaller neighbors did have a small but significant additive effect on the diameter growth of Cecropia saplings and stem slenderness of Trichospermum saplings. We conclude that competition for light was more important than belowground competition in this initial phase of moist tropical forest successional, despite the low soil fertility.

A decade has now passed since Hubbell published The Unified Neutral Theory of Biodiversity and Biogeography. Neutral theory highlights the importance of dispersal limitation, speciation and ecological drift in the natural world and provides quantitative null models for assessing the role of adaptation and natural selection. Significant advances have been made in providing methods for understanding neutral predictions and comparing them with empirical data. In this review, we describe the current state-of-the-art techniques and ideas in neutral theory and how these are of relevance to ecology. The future of neutral theory is promising, but its concepts must be applied more broadly beyond the current focus on species-abundance distributions.

A decade has now passed since Hubbell published The Unified Neutral Theory of Biodiversity and Biogeography. Neutral theory highlights the importance of dispersal limitation, speciation and ecological drift in the natural world and provides quantitative null models for assessing the role of adaptation and natural selection. Significant advances have been made in providing methods for understanding neutral predictions and comparing them with empirical data. In this review, we describe the current state-of-the-art techniques and ideas in neutral theory and how these are of relevance to ecology. The future of neutral theory is promising, but its concepts must be applied more broadly beyond the current focus on species-abundance distributions.

HARTEMINK AE. 2010. The invasive shrub Piper aduneum in Papua New Guinea: a review. Piper aduncum is a shrub native to Central America. It is found in most Central and South American countries and also in the Caribbean and southern Florida (USA). In Asia and the Pacific, P aduncum occurs in Indonesia, Malaysia, Philippines, Papua New Guinea, Solomon Islands, Vanuatu, Fiji, Micronesia, American Samoa, Niue, the Marianas, Tonga, Samoa, the Cook Islands, Palatt and Hawaii (USA). Piper aduncum arrived in Papua New Guinea before the mid-1930s. From the 1970s, it started to dominate the secondary fallow vegetation in many parts of the humid lowlands. It invaded grassland areas and also appeared in the highlands up to 2100 in asl. The seeds are dispersed by birds, bats and wind, as well as by logging equipment and in some localities, by migrating people. The combination of its vigorous generative characteristics (small and abundant seeds), high growth rate and the accidental or intentional spreading has resulted ill its presence in most provinces of Papua New Guinea. In the 1990s, awareness of the spread of P aduncum grew and there was a corresponding increase in research interest. from a range of disciplines, e.g. pharmacology, agronomy, quarantine, forestry and taxonomy. The invasion of P aduncum has affected the farming system and livelihood of many rural people. Future research should focus on mapping its extent, and studying its agronomic, socio-economic and ecological effects, particularly its effect on biodiversity.

We analyzed successional patterns in a very dry tropical deciduous forest by using 15 plots differing in age after abandonment and contrasted them to secondary successions elsewhere in the tropics. We used multivariate ordination and nonlinear models to examine changes in composition and structure and to estimate forest recovery rates and resilience. A shrub phase characterized early succession (0¿3 yr); afterwards, the tree Mimosa acantholoba became dominant. Below its canopy, sprouts and seed-regenerated individuals of mature forest species slowly accumulated. Canopy height, plant density, and crown cover stabilized in less than 15 yr, whereas species richness, diversity, and basal area continued to increase. The pioneer species group has very low diversity and the long-lived pioneer phase typical of humid forests is absent; species composition may therefore recover soon as suggested by convergence toward mature forest species composition. The time trend of plant density also differed from humid forests for it lacked its characteristic density decline, presumably because of differences in regeneration mechanisms between very dry and other less water-stressed forest types. As opposed to the prevailing hypothesis, resilience was not higher than in moister forests, and thus factors other than structure relative simplicity must be accounted for when assessing resilience

Endophytic actinomycetes are one of the primary groups that share symbiotic relationships with medicinal plants and are key reservoir of biologically active compounds. In this study, six selective medicinal plants were targeted for the first time for endophytic actinomycetes isolation from Gibbon Wild Life Sanctuary, Assam, India, during winter and summer and 76 isolates were obtained. The isolates were found to be prevalent in roots followed by stem and leaves. 16S rRNA gene sequence analysis revealed 16 genera, including rare genera, Verrucocsispora, Isoptericola and Kytococcus , which have never been previously reported as endophytic. The genus Streptomyces (66%) was dominant in both seasons. Shannon's diversity index showed that Azadirachta indica (1.49), Rauwolfia serpentina (1.43), and Emblica officianalis (1.24) were relatively good habitat for endophytic actinomycetes. Antimicrobial strains showed prevalence of polyketide synthase (PKS) type-II (85%) followed by polyketide synthase type-I (14%) encoded in the genomes. Expression studies showed 12 folds upregulation of PKSII gene in 7th day of incubation for Streptomyces antibioticus (EAAG90). Our results emphasize that the actinomycetes assemblages within plant tissue exhibited biosynthetic systems encoding for important biologically active compounds.

Deforestation and fragmentation are major components of global change; both are contributing to the rapid loss of tropical forest area with important implications for ecosystem functioning and biodiversity conservation. The forests of South Ecuador are a biological 'hotspot' due to their high diversity and endemism levels. We examined the deforestation and fragmentation patterns in this area of high conservation value using aerial photographs and Aster satellite scenes. The registered annual deforestation rates of 0.75% (1976-1989) and 2.86% (1989-2008) for two consecutive survey periods, the decreasing mean patch size and the increasing isolation of the forest fragments show that the area is under severe threat. Approximately 46% of South Ecuador's original forest cover had been converted by 2008 into pastures and other anthropogenic land cover types. We found that deforestation is more intense at lower elevations (premontane evergreen forest and shrubland) and that the deforestation front currently moves in upslope direction. Improved awareness of the spatial extent, dynamics and patterns of deforestation and forest fragmentation is urgently needed in biologically diverse areas like South Ecuador. peerReviewed

The high species richness of tropical forests has long been recognized, yet there remains substantial uncertainty regarding the actual number of tropical tree species. Using a pantropical tree inventory database from closed canopy forests, consisting of 657,630 trees belonging to 11,371 species, we use a fitted value of Fisher's alpha and an approximate pantropical stem total to estimate the minimum number of tropical forest tree species to fall between ∼40,000 and ∼53,000, i.e. at the high end of previous estimates. Contrary to common assumption, the Indo-Pacific region was found to be as species-rich as the Neotropics, with both regions having a minimum of ∼19,000-25,000 tree species. Continental Africa is relatively depauperate with a minimum of ∼4,500-6,000 tree species. Very few species are shared among the African, American, and the Indo-Pacific regions. We provide a methodological framework for estimating species richness in trees that may help refine species richness estimates of tree-dependent taxa., 0, SCOPUS: ar.j, info:eu-repo/semantics/published

The first bryophyte survey results from Colombian Amazonia are presented. Bryophyte species, differentiated into mosses and liverworts, and further into four life-form classes, were sampled in 0.1-ha plots. These plots were distributed over four landscape units in the middle Caquetá area: floodplains, swamps, terra firme forests and white-sand areas. The total numbers of bryophyte species in the units were 50, 45, 45 and 32, respectively. The plots in floodplains and swamps were richer in moss species than the terra firme and white-sand plots, suggesting that coexistence of many moss species is favoured by high humidity. Moss species with fan life-forms preferred floodplains. On the other hand, liverwort species richness was highest in white-sand plots, which suggests that light incidence controls liverwort species-richness, perhaps more than humidity. All plots from the floodplain of the Caquetá River differed remarkably in species composition (of both mosses and liverworts) from the other landscape units. This may be due to the unique properties of this varzea system where, during yearly flooding events, soil, dead logs and stems are covered with a fresh layer of nutrient-rich fine silt, enhancing the surface for colonization and improving the conditions for productive bryophyte growth compared with elsewhere in the middle Caquetá area

Growth defense tradeoff theory predicts that plants in low-resource habitats invest more energy in defense mechanisms against natural enemies than growth, whereas plants in high-resource habitats can afford higher leaf loss rates. A less-studied defense against herbivores involves the synchrony of leaf production, which can be an effective defense strategy if leaf biomass production exceeds the capacity of consumption by insects. The aim of this study was to determine whether leaf synchrony varied across habitats with different available resources and whether insects were able to track young leaf production among tree habitat specialists in a tropical forest of French Guiana. We predicted that high-resource habitats would exhibit more synchrony in leaf production due to the low cost and investment to replace leaf tissue. We also expected closer patterns of leaf synchrony and herbivory within related species, assuming that they shared herbivores. We simultaneously monitored leaf production and herbivory rates of five pairs of tree species, each composed of a specialist of terra firme or white-sand forests within the same lineage. Our prediction was not supported by the strong interaction of habitat and lineage for leaf synchrony within individuals of the same species; although habitat specialists differed in leaf synchrony within four of five lineages, the direction of the effect was variable. All species showed short time lags for the correlation between leaf production and herbivory, suggesting that insects are tightly tracking leaf production, especially for the most synchronous species. Leaf synchrony may provide an important escape defense against herbivores, and its expression appears to be constrained by both evolutionary history and environmental factors.

The development of forest succession theory has been based on studies in temperate and tropical wet forests. As rates and pathways of succession vary with the environment, advances in successional theory and study approaches are challenged by controversies derived from such variation and by the scarcity of studies in other ecosystems. During five years, we studied development pathways and dynamics in a chronosequence spanning from very early to late successional stages (ca. 1–60 years) in a tropical dry forest of Mexico. We (1) contrasted dynamic pathways of change in structure, diversity, and species composition with static, chronosequence-based trends, (2) examined how structure and successional dynamics of guilds of trees shape community change, and (3) assessed the predictability of succession in this system. Forest diversity and structure increased with time but tree density stabilized early in succession. Dynamic pathways matched chronosequence trends. Succession consisted of two tree-dominated phases characterized by the development and dynamics of a pioneer and a mature forest species guild, respectively. Pioneer species dominated early recruitment (until ca. 10 years after abandonment), and declined before slower growing mature-forest species became dominant or reached maximum development rates (after 40–45 years). Pioneers promoted their replacement early in succession, while mature-forest species recruited and grew constantly throughout the process, with their lowest mortality coinciding with the peak of pioneer abundance. In contrast to prevailing stochastic views, we observed an orderly, community driven series of changes in this dry forest secondary succession. Chronosequences thus represent a valuable approach for revealing system-specific successional pathways, formulating hypotheses on causes and mechanisms and, in combination with repeated sampling, evaluating the effects of vegetation dynamics in pathway variation.

HARTEMINK AE. 2010. The invasive shrub Piper aduneum in Papua New Guinea: a review. Piper aduncum is a shrub native to Central America. It is found in most Central and South American countries and also in the Caribbean and southern Florida (USA). In Asia and the Pacific, P aduncum occurs in Indonesia, Malaysia, Philippines, Papua New Guinea, Solomon Islands, Vanuatu, Fiji, Micronesia, American Samoa, Niue, the Marianas, Tonga, Samoa, the Cook Islands, Palatt and Hawaii (USA). Piper aduncum arrived in Papua New Guinea before the mid-1930s. From the 1970s, it started to dominate the secondary fallow vegetation in many parts of the humid lowlands. It invaded grassland areas and also appeared in the highlands up to 2100 in asl. The seeds are dispersed by birds, bats and wind, as well as by logging equipment and in some localities, by migrating people. The combination of its vigorous generative characteristics (small and abundant seeds), high growth rate and the accidental or intentional spreading has resulted ill its presence in most provinces of Papua New Guinea. In the 1990s, awareness of the spread of P aduncum grew and there was a corresponding increase in research interest. from a range of disciplines, e.g. pharmacology, agronomy, quarantine, forestry and taxonomy. The invasion of P aduncum has affected the farming system and livelihood of many rural people. Future research should focus on mapping its extent, and studying its agronomic, socio-economic and ecological effects, particularly its effect on biodiversity.

The intermediate disturbance hypothesis (IDH) predicts local species diversity to be maximal at an intermediate level of disturbance. Developed to explain species maintenance and diversity patterns in species-rich ecosystems such as tropical forests, tests of IDH in tropical forest remain scarce, small-scale and contentious. We use an unprecedented large-scale dataset (2504 one-hectare plots and 331,567 trees) to examine whether IDH explains tree diversity variation within wet, moist and dry tropical forests, and we analyse the underlying mechanism by determining responses within functional species groups. We find that disturbance explains more variation in diversity of dry than wet tropical forests. Pioneer species numbers increase with disturbance, shade-tolerant species decrease and intermediate species are indifferent. While diversity indeed peaks at intermediate disturbance levels little variation is explained outside dry forests, and disturbance is less important for species richness patterns in wet tropical rain forests than previously thought.

Logging is an integral component of most conceptual models that relate human land-use and climate change to tropical deforestation via positive-feedbacks involving fire. Given that grass invasions can substantially alter fire regimes, we studied grass distributions in a tropical dry forest 1–5 yr after selective logging, and experimentally tested the effect of forest fire on populations of invasive grasses. In unlogged forests and in microhabitats created by selective logging we found a total of four alien and 16 native grass species. Grasses covered 2% of unlogged and 4% of logged forest, with grass cover in logged forest concentrated in areas directly disturbed by logging; log landings and roads had relatively greater grass cover (37% and 17%, respectively) than did skid trails (10%) and felling gaps (8%). Total grass cover and grass species richness increased with canopy openness and were greatest in sites most severely disturbed by logging. The grass flora of these disturbed areas was composed mostly of native ruderal species (e.g., Digitaria insularis , Leptochloa virgata ), a native bamboo ( Guadua paniculata ), and Urochloa ( Panicum ) maxima , a caespitose C 4 pasture grass introduced from Africa. Urochloa maxima formed monodominant stands (up to 91% cover and 2–3 m tall) and grew on 69% of log landings and 38% of roads. To better understand the potentially synergistic effects of logging and fire on the early stages of grass invasion, we tested the effect of a 12-ha experimental fire on U. maxima populations in a selectively logged forest. Three years after the fire, the area covered by alien grass in burned forest increased fourfold from 400 m 2 (pre-fire) to 1660 m 2 ; over the same period in a logged but unburned (control) area, U. maxima cover decreased from 398 m 2 to 276 m 2 . Increased canopy openness due to fire-induced tree mortality corresponded with the greater magnitude of grass invasion following fire. Selective logging of this dry forest on the southern edge of the Amazon Basin promotes alien grass invasion; when coupled with fire, the rate of invasion substantially increased. Recognition of the grass-promoting potential of selective logging is important for understanding the possible fates of tropical forests in fire-prone regions.

We analyzed successional patterns in a very dry tropical deciduous forest by using 15 plots differing in age after abandonment and contrasted them to secondary successions elsewhere in the tropics. We used multivariate ordination and nonlinear models to examine changes in composition and structure and to estimate forest recovery rates and resilience. A shrub phase characterized early succession (0¿3 yr); afterwards, the tree Mimosa acantholoba became dominant. Below its canopy, sprouts and seed-regenerated individuals of mature forest species slowly accumulated. Canopy height, plant density, and crown cover stabilized in less than 15 yr, whereas species richness, diversity, and basal area continued to increase. The pioneer species group has very low diversity and the long-lived pioneer phase typical of humid forests is absent; species composition may therefore recover soon as suggested by convergence toward mature forest species composition. The time trend of plant density also differed from humid forests for it lacked its characteristic density decline, presumably because of differences in regeneration mechanisms between very dry and other less water-stressed forest types. As opposed to the prevailing hypothesis, resilience was not higher than in moister forests, and thus factors other than structure relative simplicity must be accounted for when assessing resilience

In Papua New Guinea the shrub Piper aduncum (L) has invaded the humid lowlands and locally dominates the fallow vegetation, mainly in Morobe and Madang Provinces. It is not known when or how Piper aduncum arrived in Papua New Guinea, but it is likely that seeds were introduced by accident from Papua (Irian Jaya) or perhaps from Fiji, where it was introduced in the 1920s (Hartemink, 2001). The botanist Mary Clemens first observed Piper aduncum (hereafter referred to as piper) in 1935 near the Heldsbach mission station near Finschhafen in Morobe Province. It was not very widespread by the early 1970s and is not listed in the standard text

Monitoring protected areas and their surrounds at local to regional scales is essential given their vulnerability to anthropogenic pressures, including those associated with climatic fluctuation, and important for management and fulfilment of national and international directives and agreements. Whilst monitoring has commonly revolved around field data, remote sensing can play a key role in establishing baselines of the extent and condition of habitats and associated species diversity as well as quantifying losses, degradation or recovery associated with specific events or processes. Landsat images constitute a major data source for habitat monitoring, capturing broad scale information on changes in habitat extent and spatial patterns of fragmentation that allow disturbances in protected areas to be identified. These data are, however, less able to provide information on changes in habitat quality, species distribution and fine-scale disturbances, and hence data from other spaceborne optical sensors are increasingly being considered. Very High Resolution (VHR) optical datasets have been exploited to a lesser extent, partly because of the relative recency of spaceborne observations and challenges associated with obtaining and routinely extracting information from airborne multi-spectral and hyperspectral datasets. The lack of a shortwave infrared band in many VHR datasets and provision of too much detail (e.g., shadows within and from landscape objects) also present challenges in some cases. Light Detection and Ranging (LiDAR) and Synthetic Aperture Radar (SAR) data, particularly when used synergistically with optical data, have benefited the detection of changes in the three-dimensional structure of habitats. This review shows that remote sensing has a strong, yet underexploited potential to assist in the monitoring of protected areas. However, the data generated need to be utilized more effectively to enable better management of the condition of protected areas and their surrounds, prepare for climate change, and assist planning for future landscape management. (C) 2012 Elsevier Ltd. All rights reserved.