35 results on '"shRNAs"'
Search Results
2. Preclinical study of LMP1-RNAi-based anti-tumor therapy in EBV-positive nasopharyngeal carcinoma
- Author
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Qi Yuan, Bing-Hong Chen, Dai-jia Huang, and Rong Zhang
- Subjects
LMP1 ,ShRNAs ,Anti-tumor immunity ,Nasopharyngeal carcinoma ,Preclinical study ,Medicine (General) ,R5-920 ,Biology (General) ,QH301-705.5 - Abstract
RNA interference (RNAi) treatment has been proven to be an important therapeutic approach in cancer based on downregulation of target-oncogenes, but its clinical efficacy still needs further investigation. LMP1 is usually presented by Epstein-Barr virus (EBV)-positive tumor cells like EBV-associated nasopharyngeal carcinoma (NPC) and acts as an oncogene in tumorigenesis. However, the mechanism of LMP1 as a proto-oncogene in nasopharyngeal carcinoma is still unclear. Two sequence-specific shRNAs 1 and 2 were designed to target the different nucleotide loci of EBV latent antigen LMP1 gene and a series of in vivo and in vitro experiments were performed to investigate the therapeutic effect of sequence-specific shRNAs targeting LMP1 and its related molecular mechanisms in EBV-positive NPC. LMP1-shRNA2 generated a truncated LMP1 mRNA and protein, whereas LMP1-shRNA1 completely blocked LMP1 mRNA and protein expression. Both LMP1-shRNAs inhibited the proliferation and migration of NPC cells overexpressing LMP1 (NPC-LMP1) as well as the NPC-associated myeloid-derived suppressor cell (MDSC) expansion in vitro. However, LMP1-shRNA2 maintained the immunogenicity of NPC-LMP1 cells, which provoked MHC-class I-dependent T cell recognition. LMP1-shRNAs inhibited tumor growth in nude mice but did not reach statistical significance compared to control groups, while the LDH nanoparticle loaded LMP1-shRNAs and the antigen-specific T cells induced by NPC-LMP1 cells treated with LMP1-shRNA2 significantly reduced tumor growth in vivo. LMP1-RNAi-based anti-tumor therapy could be a new hope for the clinical efficacy of RNAi treatment of tumors like NPC.
- Published
- 2023
- Full Text
- View/download PDF
3. Editorial: Genome and transcriptome editing to understand and treat neuromuscular diseases
- Author
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Rika Maruyama, Alyson Fiorillo, Christopher Heier, Dongsheng Duan, and Toshifumi Yokota
- Subjects
amyotrophic lateral sclerosis ,5′UTR ,shRNAs ,antisense oligonucleotides ,GNE ,microRNA ,Biotechnology ,TP248.13-248.65 ,Genetics ,QH426-470 - Published
- 2023
- Full Text
- View/download PDF
4. Inhibition of orange-spotted grouper nervous necrosis virus replication by short hairpin RNAs in grouper GF-1 cells.
- Author
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Thi Tuyet Minh Vo and Cheng-Hui Lin
- Subjects
- *
RNA replicase , *GROUPERS , *VIRAL replication , *RNA interference , *GENE expression , *HAIRPIN (Genetics) , *PLASMIDS - Abstract
Infection with the nervous necrosis virus (NNV) causes viral nervous necrosis, resulting seriouslly economic losses in the aquaculture of marine fish. The viral genome of orange-spotted grouper nervous necrosis virus (OSGNNV) consists of two single-stranded, RNA1 and RNA2, encoding RNA-dependent RNA polymerase (RdRp) and capsid protein (CP), respectively. RNA interference has been shown to have activities against various viruses and is considered a promising antiviral approach. Here, we describe antiviral activities of short hairpin RNAs (shRNAs) that target RdRp and CP gene of OSGNNV in GF-1 cells. We constructed shRNAs for two specific target genes, RdRp and CP genes of OSGNNV. The shRNAs were transfected into GF-1 cells, followed by OSGNNV infection at multiplicity of infection (M.O.I) of 10.0. Then, the efficient inhibition of OSGNNV replication was examined by real-time quantitative RT-PCR analysis of RdRp and CP gene expression and viral titers. The results showed that the expression levels of RdRp and CP gene were reduced by shRNAs-transfected GF-1 cells at 48 and 72-hour post infection (hpi). Besides, the viral titers of shRNAs-transfected GF-1 cells were significantly lower than those of OSGNNV control at period of 48-96 hpi. These results indicated that the plasmid-transcribed shRNAs could inhibit effectively the OSGNNV replication in GF-1 cells, providing a potential approach to control viral disease in aquaculture. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
5. RNAi Therapy for Dominant Muscular Dystrophies and Other Myopathies
- Author
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Harper, Scott Q., Duan, Dongsheng, editor, and Mendell, Jerry R., editor
- Published
- 2019
- Full Text
- View/download PDF
6. Engineering Cellular Resistance to HIV-1 Infection In Vivo Using a Dual Therapeutic Lentiviral Vector.
- Author
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Burke, Bryan P, Levin, Bernard R, Zhang, Jane, Sahakyan, Anna, Boyer, Joshua, Carroll, Maria V, Colón, Joanna Camba, Keech, Naomi, Rezek, Valerie, Bristol, Gregory, Eggers, Erica, Cortado, Ruth, Boyd, Maureen P, Impey, Helen, Shimizu, Saki, Lowe, Emily L, Ringpis, Gene-Errol E, Kim, Sohn G, Vatakis, Dimitrios N, Breton, Louis R, Bartlett, Jeffrey S, Chen, Irvin SY, Kitchen, Scott G, An, Dong Sung, and Symonds, Geoff P
- Subjects
siRNAs ,shRNAs ,miRNAs ,Therapeutic Proof-of-Concept ,Biochemistry and Cell Biology ,Clinical Sciences - Abstract
We described earlier a dual-combination anti-HIV type 1 (HIV-1) lentiviral vector (LVsh5/C46) that downregulates CCR5 expression of transduced cells via RNAi and inhibits HIV-1 fusion via cell surface expression of cell membrane-anchored C46 antiviral peptide. This combinatorial approach has two points of inhibition for R5-tropic HIV-1 and is also active against X4-tropic HIV-1. Here, we utilize the humanized bone marrow, liver, thymus (BLT) mouse model to characterize the in vivo efficacy of LVsh5/C46 (Cal-1) vector to engineer cellular resistance to HIV-1 pathogenesis. Human CD34+ hematopoietic stem/progenitor cells (HSPC) either nonmodified or transduced with LVsh5/C46 vector were transplanted to generate control and treatment groups, respectively. Control and experimental groups displayed similar engraftment and multilineage hematopoietic differentiation that included robust CD4+ T-cell development. Splenocytes isolated from the treatment group were resistant to both R5- and X4-tropic HIV-1 during ex vivo challenge experiments. Treatment group animals challenged with R5-tropic HIV-1 displayed significant protection of CD4+ T-cells and reduced viral load within peripheral blood and lymphoid tissues up to 14 weeks postinfection. Gene-marking and transgene expression were confirmed stable at 26 weeks post-transplantation. These data strongly support the use of LVsh5/C46 lentiviral vector in gene and cell therapeutic applications for inhibition of HIV-1 infection.
- Published
- 2015
7. Targeting LOX-1 Inhibits Colorectal Cancer Metastasis in an Animal Model
- Author
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Michela Murdocca, Rosamaria Capuano, Sabina Pucci, Rosella Cicconi, Chiara Polidoro, Alexandro Catini, Eugenio Martinelli, Roberto Paolesse, Augusto Orlandi, Ruggiero Mango, Giuseppe Novelli, Corrado Di Natale, and Federica Sangiuolo
- Subjects
colorectal cancer ,LOX-1 ,shRNAs ,xenograft model ,neo-angiogenesis ,metastatic cancer ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Recurrence and metastasis are the primary causes of mortality in patients with colorectal cancer (CRC), and therefore effective tools to reduce morbidity and mortality of CRC patients are necessary. LOX-1, the ox-LDL receptor, is strongly involved in inflammation, obesity, and atherosclerosis, and several studies have assessed its role in the carcinogenesis process linking ROS, metabolic disorders and cancer. We have already demonstrated in vitro that LOX-1 expression correlates to the aggressiveness of human colon cancer and its downregulation weakens the tumoral phenotype, indicating its potential function as a biomarker and a target in CRC therapy. Here we further investigate in vivo the role of LOX-1 in colon tumorigenesis by xenografting procedures, injecting nude mice both subcutaneously and intravenously with human high grade metastatic colorectal cancer cells, DLD-1, in which LOX-1 expression has been downregulated by shRNA (LOX-1RNAi cells). Histopathological and immunohistochemical evaluations have been performed on xenograft tumors. The experiments have been complemented by the analysis of the volatile compounds (VOCs) collected from the cages of injected mice and analyzed by gas-chromatography and gas sensors. After intravenous injection of LOX-1RNAi cells, we found that LOX-1 silencing influences both the engraftment of the tumor and the metastasis development, acting by angiogenesis. For the first time, we have observed that LOX-1 inhibition significantly prevents metastasis formation in injected mice and, at the same time, induces a downregulation of VEGF-A165, HIF-1α, and β-catenin whose expression is involved in cell migration and metastasis, and a variation of histone H4 acetylation pattern suggesting also a role of LOX-1 in regulating gene transcription. The analysis of the volatile compounds (VOCs) collected from the cages of injected mice has evidenced a specific profile in those xenograft mice in which metastasis originates. These findings underline the role of LOX-1 as a potential target for inhibition of tumor progression and metastasis, enhancing current therapeutic strategies against colorectal cancer.
- Published
- 2019
- Full Text
- View/download PDF
8. Preclinical study of LMP1-RNAi-based anti-tumor therapy in EBV-positive nasopharyngeal carcinoma
- Author
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Yuan, Qi, Chen, Bing-Hong, Huang, Dai-jia, and Zhang, Rong
- Subjects
Preclinical study ,ShRNAs ,Nasopharyngeal carcinoma ,Anti-tumor immunity ,LMP1 - Abstract
RNA interference (RNAi) treatment has been proven to be an important therapeutic approach in cancer based on downregulation of target-oncogenes, but its clinical efficacy still needs further investigation. LMP1 is usually presented by Epstein-Barr virus (EBV)-positive tumor cells like EBV-associated nasopharyngeal carcinoma (NPC) and acts as an oncogene in tumorigenesis. However, the mechanism of LMP1 as a proto-oncogene in nasopharyngeal carcinoma is still unclear. Two sequence-specific shRNAs 1 and 2 were designed to target the different nucleotide loci of EBV latent antigen LMP1 gene and a series of in vivo and in vitro experiments were performed to investigate the therapeutic effect of sequence-specific shRNAs targeting LMP1 and its related molecular mechanisms in EBV-positive NPC. LMP1-shRNA2 generated a truncated LMP1 mRNA and protein, whereas LMP1-shRNA1 completely blocked LMP1 mRNA and protein expression. Both LMP1-shRNAs inhibited the proliferation and migration of NPC cells overexpressing LMP1 (NPC-LMP1) as well as the NPC-associated myeloid-derived suppressor cell (MDSC) expansion in vitro. However, LMP1-shRNA2 maintained the immunogenicity of NPC-LMP1 cells, which provoked MHC-class I-dependent T cell recognition. LMP1-shRNAs inhibited tumor growth in nude mice but did not reach statistical significance compared to control groups, while the LDH nanoparticle loaded LMP1-shRNAs and the antigen-specific T cells induced by NPC-LMP1 cells treated with LMP1-shRNA2 significantly reduced tumor growth in vivo. LMP1-RNAi-based anti-tumor therapy could be a new hope for the clinical efficacy of RNAi treatment of tumors like NPC.
- Published
- 2023
9. Transduction of an optimized recombinant lentivirus expressing E-Cadherin shRNA resulted in stable downregulation of CDH1 gene and obvious cell morphological change in the human colorectal cancer cell line HT29
- Author
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Saltanatpour, Zohreh, Kadivar, Mehdi, Johari, Behrooz, Lotfinia, Majid, Maghsood, Faezeh, Zeinali, Sirous, Nasehi, Leila, Fallah, Ali, Fanni, Aslan, and Nikbin, Behrooz
- Published
- 2016
10. Targeting LOX-1 Inhibits Colorectal Cancer Metastasis in an Animal Model.
- Author
-
Murdocca, Michela, Capuano, Rosamaria, Pucci, Sabina, Cicconi, Rosella, Polidoro, Chiara, Catini, Alexandro, Martinelli, Eugenio, Paolesse, Roberto, Orlandi, Augusto, Mango, Ruggiero, Novelli, Giuseppe, Di Natale, Corrado, and Sangiuolo, Federica
- Subjects
METASTASIS ,COLORECTAL cancer ,CANCER invasiveness ,ANIMAL models in research ,LOW density lipoprotein receptors ,CARCINOGENESIS ,VOLATILE organic compound analysis ,XENOGRAFTS - Abstract
Recurrence and metastasis are the primary causes of mortality in patients with colorectal cancer (CRC), and therefore effective tools to reduce morbidity and mortality of CRC patients are necessary. LOX-1, the ox-LDL receptor, is strongly involved in inflammation, obesity, and atherosclerosis, and several studies have assessed its role in the carcinogenesis process linking ROS, metabolic disorders and cancer. We have already demonstrated in vitro that LOX-1 expression correlates to the aggressiveness of human colon cancer and its downregulation weakens the tumoral phenotype, indicating its potential function as a biomarker and a target in CRC therapy. Here we further investigate in vivo the role of LOX-1 in colon tumorigenesis by xenografting procedures, injecting nude mice both subcutaneously and intravenously with human high grade metastatic colorectal cancer cells, DLD-1, in which LOX-1 expression has been downregulated by shRNA (LOX-1
RNAi cells). Histopathological and immunohistochemical evaluations have been performed on xenograft tumors. The experiments have been complemented by the analysis of the volatile compounds (VOCs) collected from the cages of injected mice and analyzed by gas-chromatography and gas sensors. After intravenous injection of LOX-1RNAi cells, we found that LOX-1 silencing influences both the engraftment of the tumor and the metastasis development, acting by angiogenesis. For the first time, we have observed that LOX-1 inhibition significantly prevents metastasis formation in injected mice and, at the same time, induces a downregulation of VEGF-A165, HIF-1α, and β-catenin whose expression is involved in cell migration and metastasis, and a variation of histone H4 acetylation pattern suggesting also a role of LOX-1 in regulating gene transcription. The analysis of the volatile compounds (VOCs) collected from the cages of injected mice has evidenced a specific profile in those xenograft mice in which metastasis originates. These findings underline the role of LOX-1 as a potential target for inhibition of tumor progression and metastasis, enhancing current therapeutic strategies against colorectal cancer. [ABSTRACT FROM AUTHOR]- Published
- 2019
- Full Text
- View/download PDF
11. Design of Synthetic shRNAs for Targeting Hepatitis C: A New Approach to Antiviral Therapeutics
- Author
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Johnston, Brian H., Ge, Qing, Erdmann, Volker A., editor, and Barciszewski, Jan, editor
- Published
- 2012
- Full Text
- View/download PDF
12. Untersuchung zur Rolle von Dusp6 im Negative-Feedback-Signalling bei der Proliferation von Kardiomyozyten
- Author
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Davitasvili, Shirly
- Subjects
shRNAs ,AAV-DJ ,Dusp6 ,cardiomyocyte-proliferation ,Kardiomyozyten-Proliferation ,ERK1 - Abstract
Herz-Kreislauf-Erkrankungen (HKE) sind die häufigste Todesursache weltweit, ischämische Herzkrankheiten (IHK) sind die häufigsten unter den HKEs. IHK verursachen irreparable Schäden, welche zu Nekrose und Fibrose an der betroffenen Stelle des Herzmuskelgewebes führen können. Untersuchungen zeigten, dass der ErbB2-Pathway eine wichtige Rolle bei der Herzregeneration spielt, indem es zu Dedifferenzierung und Proliferation von Kardiomyozyten führt, gefolgt von Redifferenzierung und Funktionswiederherstellung. Das Verständnis der zugrunde liegenden Mechanismen der Redifferenzierung kann eine wichtige Rolle bei der Verstärkung dieser Prozesse spielen. Interne Daten haben die ERK1/2-spezifische Phosphatase Dusp6 als einen möglichen Beiträger zur Redifferenzierung durch negative feedback signalling hervorgehoben. Diese Arbeit soll die Grundlage für Untersuchungen zur funktionellen Rolle von Dusp6 bei der Redifferenzierung von Kardiomyozyten legen Um dies zu untersuchen wurden Vektoren entworfen, die shRNAs gegen Dusp6 beinhalten. Diese Vektoren wurden in Zelllinien und in primärer Herz-Zellkultur getestet. Die Ergebnisse zeigen einen funktionellen knock-down von Dusp6 in NIH3T3 Zelllinien sowie in primärer Herz-Zellkultur, sowie dass AAV-DJ hier ein effektives Instrument zur Gentransfer-Vermittlung ist. Der knock-down von Dusp6 führt in primärer Herz-Zellkultur zu vermehrter Proliferation. Darüber hinaus wurde festgestellt, dass die Dusp6-Expression während der Proliferation ihren Höhepunkt erreicht, was eine direkte Korrelation zwischen dem Fortschreiten der Mitose und Dusp6-Expression zeigt. Diese Ergebnisse bilden eine starke Basis für weitere Untersuchungen sowohl in vitro als auch in vivo. Cardiovascular Disease (CVD) is the most common cause of death worldwide, with Ischaemic Heart Disease (IHD) being the predominant cause among the CVDs. IHDs cause irreparable damage to the heart, leading to irreversible tissue damage and fibrosis in the affected area. The ErbB2-pathway has been shown to be an important mediator of heart regeneration via dedifferentiation and proliferation of cardiomyocytes, followed by their redifferentiation and restoration of heart function. However, little is known about how redifferentiation and functional restoration take place. Understanding the underlying mechanisms of redifferentiation may play an important role in augmenting these processes. Internal investigations have highlighted the ERK1/2-specific phosphatase Dusp6 as a possible contributor to redifferentation through negative feedback signalling. This thesis should lay the basis for investigations into the functional role of Dusp6 in the cardiomyocyte redifferentiation. To investigate this, vector plasmids carrying shRNAs against Dusp6 were designed and tested in a cell line as well as in cardiac tissue and cardiomyocytes. The results show a functional knock-down of Dusp6 both in NIH3T3 cell line as well as cardiac tissue by the shRNA, with AAV-DJ being an effective tool for vector delivery to cardiomyocytes. The results further show that knock-down of Dusp6 in cardiac tissue leads to a boost in proliferation. Additionally, it was revealed that Dusp6 expression peaks during proliferation, showing a direct correlation between the progression of mitosis and Dusp6 expression. These results provide a strong basis for further investigations both in vitro and in vivo. Abweichender Titel laut Übersetzung der Verfasserin/des Verfassers Masterarbeit Wien, FH Campus Wien 2022
- Published
- 2022
13. Adenovirus-mediated shRNA interference against HSV-1 replication in vitro.
- Author
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Song, Bo, Liu, Xinjing, Wang, Qingzhi, Zhang, Rui, Yang, Ting, Han, Zhiqiang, and Xu, Yuming
- Subjects
- *
HUMAN herpesvirus 1 , *RNA interference , *ADENOVIRUS diseases , *VIRAL replication , *ANTIVIRAL agents , *PROTEIN synthesis - Abstract
The UL29 and UL28 proteins encoded by herpes simplex virus type 1 (HSV-1) are critical for its replication and packaging, respectively. Research has demonstrated that synthesized siRNA molecules targeting the UL29 gene are able to suppress HSV-2 replication and the UL28-null HSV-1 gene cannot form infectious viruses in vitro. Silencing the UL28 and UL29 genes by RNAi might lead to the development of novel antiviral agents for the treatment of HSV-1 infections. Two kinds of short hairpin RNAs (shRNAs) targeting the UL29 and UL28 genes were chemically synthesized and then delivered into cells by a replication-defective human adenovirus type 5 (Adv5) vector. (−) shRNAs targeting none of the genome of HSV-1 were used as the control. Vero cells were inoculated with Ad-UL28shRNA or Ad-UL29shRNA at a multiplicity of infection (MOI) of 100 and challenged 24 h later with HSV-1 at an MOI of 0.01 to inhibit HSV-1 replication, as measured by the level of the corresponding RNA and proteins. In addition, the amount of progeny virus was assessed at daily intervals. The antiviral effects of Ad-shRNAs at ongoing HSV-1 infection were explored at 12 h after inoculation of the HSV-1. The results showed that the shRNAs delivered by Adv5 significantly suppressed HSV-1 replication in vitro, as determined by the levels of viral RNA transcription, viral protein synthesis, and viral production. The Ad-UL28shRNA and Ad-UL29shRNA suppressed the replication of HSV-1, respectively, compared with the control group ( P < 0.001). When Ad-UL28shRNA and Ad-UL29shRNA were combined, a synergistic effect was observed. The antiviral effects could sustain for at least 4 days after the HSV-1 infection ( P < 0.001). Furthermore, antiviral effects were achieved 12 h prior to inoculation of Adv5-shRNAs ( P < 0.001). Our data demonstrated comparable antiviral activities against herpes simplex virus by shRNAs targeting either UL29 or UL28 sites in vitro and the effectiveness of using the Adv5 delivery of shRNAs. Therefore, the Adv5 delivery of shRNAs targeting the UL29 and UL28 sites probably may provide an alternative strategy for controlling HSV-1 infection. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
14. Suppression of c-FLIPL promotes JNK activation in malignant melanoma cells.
- Author
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FEN TIAN, YANGE HU, XIXI SUN, GAIHUI LU, YAN LI, JING YANG, and JUAN TAO
- Subjects
- *
IMMUNOSUPPRESSION , *TUMOR diagnosis , *ANGIOTENSIN converting enzyme , *MELANOMA treatment , *CELL proliferation - Abstract
The up-regulation of cellular Fas-associated death domain-like interleukin-1β-converting enzyme (FLICE)-like inhibitory protein (c-FLIP) has been reported in various tumor types, and has been previously shown to be associated with the clinicopathological features of melanoma. To assess its potential role in cancer therapy, the present study evaluated the effects of short hairpin (sh)RNAs of different c-FLIP isoforms on cellular proliferation and c-Jun N-terminal kinase (JNK) signaling. Human c-FLIP shRNA plasmids were constructed and transfected into the A875 melanoma cell line. It was observed that c-FLIP shRNA exhibited strong inhibitory effects against the levels of phosphorylated-JNK and inhibited cellular proliferation in A875 cells. Thus, this indicated that c-FLIP long form shRNA serves a specific inhibitory role in cellular proliferation through inducing the activation of the JNK pathway in A875 cells. The present study provided insight into the development of RNAi based therapies for melanoma. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
15. Role of endonuclease G in exogenous DNA stability in HeLa cells.
- Author
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Misic, V., El-Mogy, M., and Haj-Ahmad, Y.
- Subjects
- *
ENDONUCLEASES , *HELA cells , *NUCLEASE genetics , *GENE expression , *CERVICAL cancer , *GENE therapy , *THERAPEUTICS - Abstract
Endonuclease G (EndoG) is a well-conserved mitochondrial-nuclear nuclease with dual lethal and vital roles in the cell. The aim of our study was to examine whether EndoG exerts its nuclease activity on exogenous DNA substrates such as plasmid DNA (pDNA), considering their importance in gene therapy applications. The effects of EndoG knockdown on pDNA stability and levels of encoded reporter gene expression were evaluated in the cervical carcinoma HeLa cells. Transfection of pDNA vectors encoding short-hairpin RNAs (shRNAs) reduced levels of EndoG mRNA in HeLa cells. In physiological circumstances, EndoG knockdown did not have an effect on the stability of pDNA or the levels of encoded transgene expression as measured over a four-day time course. However, when endogenous expression of EndoG was induced by an extrinsic stimulus, targeting of EndoG by shRNA improved the perceived stability and transgene expression of pDNA vectors. Therefore, EndoG is not a mediator of exogenous DNA clearance, but in non-physiological circumstances, it may nonspecifically cleave intracellular DNA regardless of its origin. These findings make it unlikely that targeting of EndoG is a viable strategy for improving the duration and level of transgene expression from nonviral DNA vectors in gene therapy efforts. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
16. Assessment of goat activin receptor type IIB knockdown by short hairpin RNAs in vitro.
- Author
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Patel, Amrutlal K., Tripathi, Ajai K., Shah, Ravi K., Patel, Utsav A., and Joshi, Chaitanya G.
- Abstract
Background: Targeted knockdown of ACVR2B, a receptor for TGF beta superfamily, has been seen as a potential candidate to enhance the muscle mass through RNAi approach. Methods: We have evaluated the potential short hairpin RNAs targeting goat ACVR2B in human HEK293T cells and goat myoblasts cells by transient transfection and measured their knockdown efficiency and possible undesired interferon response by quantitative real-time PCR. Results: We observed a significant silencing (64-81%) of ACVR2B in 293T cells with all seven shRNAs (sh1 to sh7) constructs and 16-46% silencing with maximum of 46% by sh6 ( p = 0.0318) against endogenous ACVR2B whereas up to 66% ( p = 0.0002) silencing by sh6 against exogenously expressed ACVR2B in goat myoblasts cells. Transient knockdown of ACVR2B in goat myoblasts cells by shRNAs did not show significant correlation with the expression of MyoD ( r = 0.547; p = 0.102), myogenin ( r = 0.517; p = 0.126) and Myf5 ( r = 0.262; p = 0.465). As reported earlier, transfection of plasmid DNA induced potent interferon response in 293T and goat myoblasts cells. Conclusions: The present study demonstrates the targeted knockdown of ACVR2B by shRNAs in HEK293T and goat myoblasts cells in vitro. The transient knockdown of ACVR2B by shRNAs in goat myoblasts did not alter the myogenic gene expression program. However, shRNAs showing significant knockdown efficiency in our study may further be tested for long term and stable knockdown to assess their potential to use for enhancing muscle mass in vivo. As reported earlier, expression of shRNAs through plasmid expression vectors induces potent interferon response raising the concern of safety of its application in vivo. [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
- View/download PDF
17. Myostatin knockdown and its effect on myogenic gene expression program in stably transfected goat myoblasts.
- Author
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Patel, Amrutlal, Tripathi, Ajai, Patel, Utsav, Shah, Ravi, and Joshi, Chaitanya
- Abstract
Myostatin, a negative regulator of skeletal muscle mass, is a proven candidate to modulate skeletal muscle mass through targeted gene knockdown approach. Here, we report myostatin (MSTN) knockdown in goat myoblasts stably expressing small hairpin RNA (shRNAs) against MSTN gene through lentivirus vector-mediated integration. We observed 72% ( p = 0.003) and 54% ( p = 0.022) downregulation of MSTN expression with sh2 shRNA compared to empty vector control and untransduced myoblasts, respectively. The knockdown of MSTN expression was accompanied with concomitant downregulation of myogenic regulatory factor MYOD (77%, p = 0.001), MYOG (94%, p = 0.000), and MYF5 (36%, p = 0.000), cell cycle regulator p21 (62%, p = 0.000), MSTN receptor ACVR2B (23%, p = 0.061), MSTN antagonist follistatin (81%, p = 0.000), and downstream signaling mediators SMAD2 (20%, p = 0.060) and SMAD3 (49%, p = 0.006). However, the expression of MYF6 was upregulated by 14% compared to control lentivirus-transduced myoblasts ( p = 0.354) and 79% compared to untransduced myoblasts ( p = 0.018) in sh2 shRNA-transduced goat myoblasts cells. Although, MSTN knockdown led to sustained cell proliferation of myoblasts, the myoblasts fusion was suppressed in both MSTN knocked down and control lentivirus-transduced myoblasts. The expression of interferon response gene OAS1 was significantly upregulated in control lentivirus (10.86-fold; p = 0.000)- and sh2 (1.71-fold; p = 0.002)-integrated myoblasts compared to untransduced myoblasts. Our study demonstrates stable knockdown of MSTN in goat myoblasts cells and its potential for use in generation of transgenic goat by somatic cell nuclear transfer. [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
- View/download PDF
18. Antiviral strategies combining antiretroviral drugs with RNAi-mediated attack on HIV-1 and cellular co-factors
- Author
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Boutimah, Fatima, Eekels, Julia J.M., Liu, Ying Poi, and Berkhout, Ben
- Subjects
- *
AIDS patients , *ANTIVIRAL agents , *ANTIRETROVIRAL agents , *RNA interference , *GENE therapy , *NUCLEOTIDE sequence , *VIRAL replication - Abstract
Abstract: To improve the care of HIV-1/AIDS patients there is a critical need to develop tools capable of blocking viral evolution and circumventing therapy-associated problems. An emerging solution is gene therapy either as a stand-alone approach or as an adjuvant to pharmacological drug regimens. Combinatorial RNAi by multiplexing antiviral RNAi inhibitors through vector-mediated delivery has recently shown significant superiority over conventional mono-therapies. Viral as well as cellular co-factor targets have been identified, but they are generally attacked separately. Here, we hypothesized that a mixture of shRNAs directed against highly conserved viral RNA sequences and the mRNAs of cellular components that are involved in HIV replication could restrict mutational escape by enhanced synergistic inhibition. We screened for potent silencer cocktails blending inhibitors acting scattered along the viral replication cycle. The results show enhanced and extended suppression of viral replication for some combinations. To further explore the power of combinatorial approaches, we tested the influence of RNAi-mediated knockdown on the activity of conventional antiretroviral drugs (fusion, RT, integrase and protease inhibitors). We compared the fold-change in IC50 (FCIC50) of these drugs in cell lines stably expressing anti-HIV and anti-host shRNAs and measured increased values that are up by several logs for some combinations. We show that high levels of additivity and synergy can be obtained by combining gene therapy with conventional drugs. These results support the idea to validate the therapeutic potential of this anti-HIV approach in appropriate in vivo models. [Copyright &y& Elsevier]
- Published
- 2013
- Full Text
- View/download PDF
19. Expression of short hairpin RNA (shRNA) targeting AC2 gene of Mungbean yellow mosaic India virus (MYMIV) reduces the viral titre in soybean
- Author
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Ramesh, Shunmugiah V., Shivakumar, Maranna, Praveen, Shelly, Chouhan, Bhagat S., and Chand, Suresh
- Published
- 2019
- Full Text
- View/download PDF
20. Adeno-associated virus-delivered polycistronic microRNA-clusters for knockdown of vascular endothelial growth factor in vivo.
- Author
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Pihlmann, Maria, Askou, Anne Louise, Aagaard, Lars, Bruun, Gitte Hoffmann, Svalgaard, Jesper Dyrendom, Holm-Nielsen, Marie Hebsgaard, Dagnæs-Hansen, Frederik, Bek, Toke, Mikkelsen, Jacob Giehm, Jensen, Thomas Gryesten, and Corydon, Thomas Juhl
- Abstract
Background Vascular endothelial growth factor (VEGF) is an angiogenic growth factor that plays a critical role in several diseases, including cancer, rheumatoid arthritis and diseases of the eye. Persistent regulation of VEGF by expression of small interfering RNAs targeting VEGF represents a potential future strategy for treatment of such diseases. As a step toward this goal, the present study combines the potency of VEGF-targeted miRNA mimics, produced from a miRNA cluster, with delivery by adeno-associated virus (AAV)-based vectors. Methods Nine different engineered tri-cistronic miRNA clusters encoding anti-VEGF effectors were generated and tested in adult human retinal pigment epithelial (ARPE-19) cells using Renilla luciferase screening, quantitative reverse transcriptase-polymerase chain reaction (RT-PCR), western blotting and immunostaining analysis. In vivo efficacy was tested by the injection of scAAV2/8 vectors expressing the most effective miRNA cluster into murine hindlimb muscles, followed by quantitative RT-PCR. Results Plasmids containing anti-VEGF miRNA clusters showed efficient silencing of VEGF and demonstrated a combined gene silencing effect for miRNA clusters composed of multiple miRNA-mimicked RNA interference effectors. The most potent molecule, miR-5,10,7, resulted in a knockdown of VEGF by approximately 75%. Injection of scAAV2/8 vectors expressing miR-5,10,7 into murine hindlimb muscles, resulted in a 44% reduction of endogenous VEGF. Conclusions We have developed miRNA clusters encoding anti-VEGF effectors and shown, in a mouse model, that VEGF is efficiently down-regulated by scAAV2/8-delivered miRNA clusters, allowing potent attenuation of VEGF. These findings may contribute to the development of gene therapy based on AAV-mediated delivery of miRNA clusters. Copyright © 2012 John Wiley & Sons, Ltd. [ABSTRACT FROM AUTHOR]
- Published
- 2012
- Full Text
- View/download PDF
21. Inhibition of the replication of grass carp reovirus in CIK cells with plasmid-transcribed shRNAs
- Author
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Ma, Jie, Wang, Weiming, Zeng, Lingbing, Fan, Yuding, Xu, Jin, and Zhou, Yong
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- *
CTENOPHARYNGODON idella , *REOVIRUSES , *FISH microbiology , *ENZYME inhibitors , *RNA polymerases , *PLASMID genetics , *VIRAL replication , *REVERSE transcriptase polymerase chain reaction - Abstract
Abstract: Two DNA constructs targeting the grass carp reovirus (GCRV) RNA dependent RNA polymerase (RdRp) gene and outer capsid protein (OCP) gene that were each 64bp in length were synthesized chemically and cloned into pSilencer2.1-U6 neo plasmid, named pSi-RdRp1286 and pSi-OCP117, respectively. After transfection of pSi-RdRp1286 and pSi-OCP117 plasmids into CIK cells, the inhibition of GCRV replication in the cells were detected by observing cytopathic effect (CPE), quantitating virus titers (TCID50/mL) and real-time quantitative RT-PCR analysis of viral RdRp and OCP genes. Five days after the cells were challenged with GCRV, both pSi-RdRp1286 and pSi-OCP117 reduced the viral titers by 5.47lgTCID50/mL and 4.37lgTCID50/mL, respectively. Compared to the positive control, CPE induced by GCRV in transfected cells was delayed and significantly less. Furthermore, the real-time quantitative RT-PCR analysis of the viral RdRp gene and OCP gene showed that the targeted gene expression were reduced by 89% and 73%, respectively. These results proved that the plasmid-transcribed shRNAs could inhibit effectively GCRV replication in CIK cells. These shRNAs provide potential tools for inhibiting GCRV infection and replication both in vitro and in vivo. [Copyright &y& Elsevier]
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- 2011
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22. One-oligonucleotide method for constructing vectors for RNA interference.
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Flores-Jasso, Carlos Fabian, Velasquez-Quesada, Ines, Landa-Solis, Carlos, Gutierrez, Andres A., and Vaca, Luis
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RNA ,DNA ,GENETIC vectors ,OLIGONUCLEOTIDES ,NUCLEOTIDES ,NUCLEIC acids - Abstract
Aim: To develop an easy, fast, automated, and inexpensive method for constructing short-hairpin-RNA cassettes for RNAi studies. Methods: Using single oligonucleotides, a variety of DNA cassettes for RNAi vectors were constructed in only few minutes in an automated manner. The cassettes, targeting the eGFP, were cloned into plasmids driven by RNA polymerase III promoter H1. Then, the plasmids were transfected into HeLa cells that were later infected with a recombinant adenovirus encoding the eGFP gene. The level of eGFP fluorescence was evaluated by confocal imaging and flow cytometry. Results: The plasmids constructed with the DNA cassettes made by the one-oligonucleotide method inhibited eGFP with different potencies, ranging from 55% to 75%. Conclusion: By using the method reported here, it is possible to simultaneously construct hundreds of different DNA cassettes for RNAi experiments in an inexpensive, automated way. This method will facilitate functional genomics studies on mammalian cells. [ABSTRACT FROM AUTHOR]
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- 2005
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23. Transduction of an optimized recombinant lentivirus expressing E-cadherin shRNA resulted in stable downregulation of CDH1 gene and obvious cell morphological change in the human colorectal cancer cell line HT29
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Zohreh Saltanatpour
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lcsh:R5-920 ,lcsh:R ,E-cadherin ,shRNAs ,lcsh:Medicine ,pGIPZ lentiviral vector ,lcsh:Medicine (General) ,CDH1 Gene - Abstract
BACKGROUND: E-cadherin (encoded by CDH1 gene) is a protein associated with invasiveness, metastasis, and poor prognosis of tumors and a critical protein in maintaining the structural integrity of epithelial sheets. The inhibition of E-cadherin expression has been reported in several types of cancers, including colorectal cancer, esophageal adenocarcinoma, gastric cancer, and pancreatic cancer. The aim of this study was to prepare an optimized recombinant lentivirus expressing short hairpin RNAs to stable downregulation of E-cadherin and evaluation of its transduction effects on cell morphology. METHODS: Human pGIPZ lentiviral shRNA vector was used to downregulation of the E-cadherin in the HT29 human colorectal cancer cell line. The expression level of mRNA was assessed using qRT-PCR. The changes in protein expression were confirmed by western blotting and ICC. Non-transduced HT29 and transduced HT29 with pGIPZ non-silencing lentiviral shRNA vector were used as controls. Furthermore, morphology of the transduced cells was monitored for 40 days using light and fluorescent microscopy. RESULTS: While the morphology of HT29 cells was epithelial-like, they changed gradually into fibroblast-like appearance after transduction. Our results showed that these molecular and morphological changes were stable in our monitoring time. CONCLUSION: It can be concluded that the suppression of CDH1 gene by shRNA method leads to depletion of E-cadherin protein expression and morphological changes in the human colorectal cancer cell line HT29.
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- 2016
24. Adapted Resistance to the Knockdown Effect of shRNA-Derived Srsf3 siRNAs in Mouse Littermates
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Rui-Hong Wang, Rong Jia, Chu-Xia Deng, Masahiko Ajiro, and Zhi-Ming Zheng
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Genetically modified mouse ,Small interfering RNA ,Transgene ,Mice, Transgenic ,Biology ,Srsf3 ,Applied Microbiology and Biotechnology ,Small hairpin RNA ,Mice ,Mammary Glands, Animal ,RNA interference ,Cell Line, Tumor ,Gene expression ,shRNAs ,Animals ,Gene silencing ,Gene Silencing ,RNA, Small Interfering ,Molecular Biology ,Ecology, Evolution, Behavior and Systematics ,Cell Proliferation ,Gene knockdown ,Serine-Arginine Splicing Factors ,Reverse Transcriptase Polymerase Chain Reaction ,RNA-Binding Proteins ,Cell Biology ,Molecular biology ,transgenic mouse ,Liver ,Female ,RNA Interference ,Research Paper ,Developmental Biology - Abstract
Gene silencing techniques are widely used to control gene expression and have potential for RNAi-based therapeutics. In this report, transgenic mouse lines were created for conditional knockdown of Srsf3 (SRp20) expression in liver and mammary gland tissues by expressing Srsf3-specific shRNAs driven by a U6 promoter. Although a small portion of the transgenic mouse littermates were found to produce siRNAs in the targeted tissues, most of the transgenic littermates at two months of age failed to display a knockdown phenotype of Srsf3 expression in their liver and mammary gland tissues where an abundant level of Srsf3 siRNAs remained. We saw only one of four mice with liver/mammary gland expressing Srsf3 siRNA displayed a suppressed level of Srsf3 protein, but not the mRNA. Data indicate that the host resistance to a gene-specific siRNA targeting an essential gene transcript can be developed in animals, presumably as a physiological necessity to cope with the hostile perturbation.
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- 2015
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25. Loss of compensatory pro-survival and anti-apoptotic modulator, IKKε, sensitizes ovarian cancer cells to CHEK1 loss through an increased level of p21
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George E. Wright, Marianne K. Kim, Ian S. Goldlust, Dong J. Min, and Christina M. Annunziata
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Cyclin-Dependent Kinase Inhibitor p21 ,IKKε ,Programmed cell death ,Apoptosis ,IκB kinase ,Biology ,therapeutic targets ,Metastasis ,Cell Line, Tumor ,medicine ,shRNAs ,Humans ,Kinome ,CHEK1 ,RNA, Small Interfering ,Ovarian Neoplasms ,p21 ,Cancer ,medicine.disease ,I-kappa B Kinase ,ovarian cancer ,Oncology ,Checkpoint Kinase 1 ,Cancer research ,Female ,Ovarian cancer ,Protein Kinases ,Research Paper ,DNA Damage ,Signal Transduction - Abstract
// Marianne K. Kim 1 , Dong J. Min 2 , George Wright 3 , Ian Goldlust 4 , Christina M. Annunziata 1 1 Women’s Malignancies Branch, Center for Cancer Research, National Cancer Institute, Bethesda, MD 20892 2 Transgenic Oncogenic and Genomics Section, Center for Cancer Research, National Cancer Institute, Bethesda, MD 20892 3 Biometrics Research Branch, Center for Cancer Research, National Cancer Institute, Bethesda, MD 20892 4 NIH Chemical Genomics Center, Division of Preclinical Innovation, National Center for Advancing Translational Sciences, Bethesda, MD 20892 Correspondence to: Christina M. Annunziata, e-mail: annunzic@mail.nih.gov Keywords: shRNAs, therapeutic targets, IKKe, CHEK1, p21, ovarian cancer Received: October 02, 2014 Accepted: October 27, 2014 Published: November 15, 2014 ABSTRACT Ovarian cancer (OC) is extremely heterogeneous, implying that therapeutic strategies should be specifically designed based on molecular characteristics of an individual’s tumor. Previously, we showed that IKKe promotes invasion and metastasis in a subset of OCs. Here, we identified CHEK1 as an IKKe-dependent lethal gene from shRNA kinome library screen. In subsequent pharmacological intervention studies, the co-inhibition of IKKe and CHEK1 was more effective in killing OC cells than single treatment. At the molecular level, co-inhibition dramatically decreased pro-survival proteins, but increased proteins involved in DNA damage and apoptosis. IKKe-knockdown increased p21 levels, while overexpression of wild-type IKKe, but not a kinase dead IKKe mutant decreased p21 levels. We further demonstrated that the depletion of p21 rendered OC cells more resistant to cell death induced by co-inhibition of IKKe and CHEK1. In conclusion, we revealed a novel interplay between IKKe, CHEK1 and p21 signaling in survival of OC. Our study provides a rationale for the clinical development of specific IKKe inhibitor and for usage of IKKe as an exploratory marker for resistance to CHEK1 inhibitors in the clinic. The interplay provides one potential explanation as to why very few clinical responses were achieved in patients treated with single-agent CHEK1 inhibitors.
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- 2014
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26. The lectin-like oxidized LDL receptor-1: A new potential molecular target in colorectal cancer
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Silvia Biocca, Massimo Sanchez, Augusto Orlandi, Roberto Paolesse, Sabina Pucci, Barbara Testa, Federica Sangiuolo, Giuseppe Novelli, Rosamaria Capuano, Michela Murdocca, Ruggiero Mango, and Corrado Di Natale
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0301 basic medicine ,Male ,Pathology ,medicine.medical_specialty ,VOCs analysis ,Colorectal cancer ,Butyrate ,Adenocarcinoma ,Settore MED/08 - Anatomia Patologica ,medicine.disease_cause ,Malignant transformation ,03 medical and health sciences ,0302 clinical medicine ,Cell Movement ,Biomarkers, Tumor ,Tumor Cells, Cultured ,Medicine ,Humans ,shRNAs ,Aged ,Cell Proliferation ,Neoplasm Staging ,Gene knockdown ,integumentary system ,business.industry ,Cell growth ,medicine.disease ,Prognosis ,Scavenger Receptors, Class E ,Survival Rate ,LOX-1 ,colon cancer ,030104 developmental biology ,Cell Transformation, Neoplastic ,Oncology ,030220 oncology & carcinogenesis ,Lymphatic Metastasis ,Cancer research ,Biomarker (medicine) ,Female ,business ,Carcinogenesis ,Colorectal Neoplasms ,Follow-Up Studies ,Research Paper - Abstract
The identification of new biomarkers and targets for tailored therapy in human colorectal cancer (CRC) onset and progression is an interesting challenge. CRC tissue produces an excess of ox-LDL, suggesting a close correlation between lipid dysfunction and malignant transformation. Lectin-like oxidized LDL receptor-1 (LOX-1) is involved in several mechanisms closely linked to tumorigenesis. Here we report a tumor specific LOX-1 overexpression in human colon cancers: LOX-1 results strongly increased in the 72% of carcinomas (P
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- 2016
27. Engineering Cellular Resistance to HIV-1 Infection In Vivo Using a Dual Therapeutic Lentiviral Vector
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Sohn G. Kim, Helen Impey, Dong Sung An, Irvin S. Y. Chen, Bryan P. Burke, Geoff Symonds, Emily L. Lowe, Ruth Cortado, Erica L. Eggers, Maureen Boyd, Naomi Keech, Dimitrios N. Vatakis, Scott G. Kitchen, Gene-Errol Ringpis, Maria V. Carroll, Valerie Rezek, Jeffrey S. Bartlett, Anna Sahakyan, Gregory Bristol, Breton Louis Randall, Joanna Camba Colón, Joshua Boyer, Bernard Levin, Saki Shimizu, and Jane Zhang
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Clinical Sciences ,CD34 ,Therapeutic Proof-of-Concept ,Biology ,Regenerative Medicine ,Viral vector ,Stem Cell Research - Nonembryonic - Human ,RNA interference ,In vivo ,Drug Discovery ,Genetics ,medicine ,shRNAs ,Progenitor cell ,Transplantation ,5.2 Cellular and gene therapies ,lcsh:RM1-950 ,virus diseases ,Gene Therapy ,Stem Cell Research ,Molecular biology ,Human Fetal Tissue ,siRNAs ,Haematopoiesis ,Infectious Diseases ,medicine.anatomical_structure ,lcsh:Therapeutics. Pharmacology ,miRNAs ,Cancer research ,HIV/AIDS ,Molecular Medicine ,Bone marrow ,Biochemistry and Cell Biology ,Development of treatments and therapeutic interventions ,Infection ,Ex vivo ,Biotechnology - Abstract
We described earlier a dual-combination anti-HIV type 1 (HIV-1) lentiviral vector (LVsh5/C46) that downregulates CCR5 expression of transduced cells via RNAi and inhibits HIV-1 fusion via cell surface expression of cell membrane-anchored C46 antiviral peptide. This combinatorial approach has two points of inhibition for R5-tropic HIV-1 and is also active against X4-tropic HIV-1. Here, we utilize the humanized bone marrow, liver, thymus (BLT) mouse model to characterize the in vivo efficacy of LVsh5/C46 (Cal-1) vector to engineer cellular resistance to HIV-1 pathogenesis. Human CD34+ hematopoietic stem/progenitor cells (HSPC) either nonmodified or transduced with LVsh5/C46 vector were transplanted to generate control and treatment groups, respectively. Control and experimental groups displayed similar engraftment and multilineage hematopoietic differentiation that included robust CD4+ T-cell development. Splenocytes isolated from the treatment group were resistant to both R5- and X4-tropic HIV-1 during ex vivo challenge experiments. Treatment group animals challenged with R5-tropic HIV-1 displayed significant protection of CD4+ T-cells and reduced viral load within peripheral blood and lymphoid tissues up to 14 weeks postinfection. Gene-marking and transgene expression were confirmed stable at 26 weeks post-transplantation. These data strongly support the use of LVsh5/C46 lentiviral vector in gene and cell therapeutic applications for inhibition of HIV-1 infection.
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- 2015
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28. SATB1-regulated transcriptome datasets of Rcho-1 rat trophoblast stem cells.
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Ghosh S, Chakravarthi VP, Rai S, Roy R, Pathak S, Ratri A, and Rumi MAK
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SATB homeobox 1 (SATB1) and its heterodimeric partner SATB2 play an important regulatory role in maintaining proliferation of trophoblast stem (TS) cells and in inhibiting trophoblast differentiation. To identify the SATB-regulated genes in TS cells, we studied the transcriptome changes in a 'loss of function' model of Rcho-1 rat TS cell line. Satb1 gene expression was silenced by lentiviral delivery of shRNAs targeted to exon 9 and exon 12. An Egfp shRNA was used as a non-targeted control. Total RNA was purified from shRNA-transduced Rcho-1 cells, and whole transcriptome was assessed by RNA-sequencing on an Illumina HiSeq X platform. Differentially expressed genes in Satb1 shRNA-transduced cells were identified by analyses of the RNA-sequencing data using CLC Genomics Workbench. Differentially expressed genes with each of the two different shRNAs were compared to identify SATB1-target genes and to eliminate the potential off-targets of the shRNAs. These datasets can be used to identify the SATB-regulated genes in TS cells and to understand the molecular mechanisms that regulate trophoblast proliferation and inhibit differentiation., (© 2019 Published by Elsevier Inc.)
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- 2019
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29. Estudo da influência dos siRNAS na replicação do vírus da hepatite delta e análise da expressão genética em células infectadas
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Mota, Sérgio Miguel Regufe Da, CUNHA, Celso, and COELHO, Ana Varela
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Delta vírus ,Hepatite delta ,viruses ,Microbiologia médica ,Proteínas ,RNA ,shRNAs ,Ciências Médicas [Domínio/Área Científica] ,Doenças hepáticas ,Biologia molecular - Abstract
O vírus da hepatite delta (HDV) é o único vírus satélite humano conhecido até à data e membro do género Deltavirus. A replicação do HDV ocorre de forma independente da replicação do vírus da hepatite B (HBV) no entanto para formar partículas infecciosas o HDV necessita das proteínas de superfície do HBV. Após a entrada no núcleo o RNA genómico de cadeia simples do HDV replica por um mecanismo de círculo rolante com a produção da cadeia de RNA complementar, o RNA antigenómico. O HDV apenas codifica uma proteína da qual existem duas formas, o antigénio pequeno e o antigénio grande. Apesar de ambos os antigénios partilharem grande parte da cadeia de aminoácidos eles possuem papéis distintos na replicação do HDV. O antigénio pequeno é essencial para a replicação viral enquanto o antigénio grande é necessário para a formação de partículas infecciosas. Apesar da simplicidade do HDV este provoca um agravamento dos sintomas dos pacientes. Na primeira parte do trabalho pretendeu-se compreender as alterações provocadas pela replicação do HDV no proteoma das células. Verificou-se que a replicação do HDV provoca alterações no padrão de expressão de 43 proteínas celulares. Destas muitas encontram-se também diferencialmente expressas durante a replicação de outros vírus de hepatite como a chaperona molecular K, a proteína regulada pelo oxigénio 105kDa ou a ribonucleoproteína La. Também foram identificadas algumas proteínas relacionadas com a defesa da célula à infecção viral nomeadamente a copina I e a anfoterina. Posteriormente analisou-se as alterações no proteoma das células causadas pela expressão transiente de cada um dos constituintes do HDV. Observou-se alterações no padrão de expressão de 25 proteínas na presença do antigénio pequeno e do antigénio grande. Apesar do número de proteínas com o padrão de expressão alterado ser o mesmo os antigénios delta provocam alterações distintas na célula. O antigénio pequeno altera o padrão de expressão de várias proteínas relacionadas com o metabolismo dos ácidos nucleicos como a proteína 1 do complexo alfa, a proteína ribonuclear heterogénea L ou a proteína zinc finger 326. Enquanto a presença do antigénio grande provocava alterações em proteínas relacionadas com o transporte celular, como a proteína relacionada com o transporte de vesículas e com as vias energéticas. Quando as células expressam o RNA genómico apenas se observam alterações no padrão de expressão de 14 proteínas, a maioria delas envolvida em processos relacionados com o metabolismo celular, transporte enquanto que o RNA antigenómico provoca alterações no padrão de expressão de 23 proteínas relacionadas principalmente com o metabolismo de proteínas e com as vias energéticas. Os resultados obtidos por análise do proteoma foram validados por quantificação da expressão da lamina A/C e da ribonucleoproteína La na presença das RNPs virais por western blot. A validação dos resultados obtidos por 2DE para as proteínas: triosefosfato isomerase, proteína H1 de ligação às histonas, ribonucleoproteína nuclear heterogénea H, ribonucleoproteína nuclear heterogénea D e da proteína de choque térmico 105kDa foi efectuada por quantificação do mRNA utilizando qPCR. As proteínas diferencialmente expressas na presença das RNPs virais foram utilizadas na construção de uma rede de interacções proteína-proteína. Foram identificadas várias proteínas nesta rede, que interagem com as proteínas anteriormente identificadas, que estão envolvidas na replicação de vários vírus, nomeadamente a proteína c-myc, e no desenvolvimento de células cancerosas, nomeadamente a proteína 2 de ligação ao receptor do factor de crescimento. Na segunda parte deste trabalho pretendeu-se analisar a capacidade dos shRNAs em inibir a replicação do HDV. Para isso foram construídos vários vectores que expressam shRNAs dirigidos para os diferentes tipos de RNA do HDV. De seguida quantificou-se o número de células que exprimia os antigénios delta na presença dos shRNAs por imunofluorescência indirecta. Verificou-se que todas as sequências utilizadas eram capazes de diminuir o número de células que exprimia os antigénios delta em cerca de 70%. Posteriormente quantificou-se a expressão dos antigénios delta por western blot. Aqui os resultados foram bastante diferentes pois apenas as sequências que tinham como alvo o mRNA viral conseguiam diminuir os níveis de expressão dos antigénios delta. A diminuição dos níveis de expressão do antigénio pequeno chega a ser de 30% enquanto para o antigénio grande observou-se uma diminuição de 60%. Observou-se mesmo um aumento da expressão dos antigénios quando se utilizava shRNAs dirigidos para o RNA antigenómico. Finalmente, para tentarmos perceber a importância da sobreexpressão de algumas proteínas durante a presença do HDV na célula, analisou-se a capacidade do HDV em replicar em células que exprimiam shRNAs contra proteínas celulares. A expressão da lamina A/C, da ribonucleoproteína La, da chaperona molecular DNA K, da proteína regulada pelo oxigénio 150KDa, da chaperonina GroEL e da lamina B2 foi inibida. De seguida quantificou-se os níveis de mRNA do HDV nestas condições. Verificou-se que a inibição da expressão da lamina B2 provocava uma diminuição drástica nos níveis de mRNA do HDV enquanto a diminuição da expressão da lamina A/C provocava um ligeiro aumento nos níveis do mRNA viral. Analisou-se ainda a expressão dos antigénios delta por western blot. Aqui verificou-se que apenas a inibição da expressão da lamina B2 provocava uma diminuição da quantidade de antigénio pequeno presente na célula. No entanto, os níveis do antigénio grande diminuíam durante a inibição da expressão da ribonucleoproteína La, da chaperona molecular DNA K, da proteína regulada pelo oxigénio 150kDa e da chaperonina GroEL. Este trabalho constitui uma primeira abordagem na compreensão das alterações celulares causadas pela replicação do HDV. Permitindo a identificação de várias proteínas envolvidas em carcinomas ou na replicação de outros tipos de hepatite. Foram também identificadas várias proteínas celulares sobreexpressas durante a replicação do HDV que parecem desempenhar um papel importante no ciclo de replicação do vírus. Este trabalho possibilita o desenvolvimento de novas abordagens de modo a investigar e identificar novos alvos terapêuticos. The hepatitis delta virus (HDV) is the only known human satellite virus and the only member of the floating genus Deltavirus. The replication of the HDV occurs independently of the replication of the helper virus, the hepatitis B virus (HBV), but to form infectious particles it needs the HBV surface proteins. Upon entering the nucleus the HDV single stranded, genomic RNA replicates by a rolling circle mechanism with the production of a complement strain of RNA, the antigenomic RNA. The HDV only encodes for one protein that exists in two forms, the small antigen and the large antigen. The delta antigens share most of their aminoacid sequence however they display different roles in the HDV life cycle. The small antigen is essential for viral replication whereas the large antigen in necessary for viral encapsidation. Despite its simplicity the HDV causes an increase in symptom severity. Thus, in this work we analysed the changes in the cellular proteome caused by the HDV replication. We identified 43 differentially expressed proteins in the presence of the HDV RNPs. Several of these proteins were involved in the replication of other viral hepatitis, namely the molecular chaperone DNA K, the oxygen regulated protein 150kDa and the ribonuclearprotein La. We also identified some proteins related to the cellular defence against viral infection such as the copine I protein and the anfoterin protein. After this primary analysis we also identified differentially expressed proteins in the presence of each of the HDV components. We observed 25 proteins with the expression pattern altered in the presence of the small antigen and the large antigen. Both antigens cause changes in the same number of proteins however these proteins have different functions in the cell. The small antigen causes changes in proteins related the nucleic acid metabolism like the alpha-complex protein 1, the heterogeneous ribonuclear particle protein L and the zinc finger protein 326. Whereas the large antigen causes changes in the expression pattern of proteins related with the cellular transport like the vesicle transport related protein and with the energy pathways of the cell. In the cells that expressed the genomic RNA we observed 14 differentially expressed proteins and we observed 23 differentially expressed proteins in the cells expressing the antigenomic RNA. These proteins were primary related with the protein metabolism and with the energy pathways of the cell. The results obtained by proteomic analysis were confirmed by quantification of the expression of the ribonuclearprotein La and the lamin A/C protein in the presence of the HDV RNPs by western blot. Whereas the results for the proteins: oxygen-regulated protein 150K, triosephosphate isomerase, heterogeneous nuclear ribonuclearprotein D, heterogeneous nuclear ribonucleoprotein H and histone H1-binding protein were confirmed by quantification of the mRNA by qPCR. We used the proteins differentially expressed in the presence of the viral RNPs to construct a protein-protein interactions network. We identified several proteins in this network that interacted with the previously identified proteins that are involved in the replication of several viruses, namely the c-myc protein, and in the development of cancer cells, namely the growth factor receptor-bound protein 2. The second part of this work aimed at analysing the ability of shRNAs in inhibiting the replication of the HDV. We constructed several vectors that expressed shRNAs targeting the different types of viral RNA. Then we analysed the number of cells expressing the viral proteins in the presence of the shRNAs by indirect immunofluorescence. All the sequences used were capable of decreasing the number of cells expressing the delta antigens in about 70%. Finally we quantified the expression of the delta antigens by western blot. Here we observed quite different results because only the sequences that targeted the viral mRNA were capable of inhibiting the expression level of the delta antigens. The small antigen was 30% repressed whereas the large antigen showed a 60% decrease in the expression levels. Interestingly we observed an increase in the levels of the delta antigens when we targeted the antigenomic RNA. Finally we analysed the changes in the viral replication in cells that expressed shRNAs against cellular proteins. In order to understand the importance of these overexpressed proteins, during the presence of the HDV, in the replication of the HDV. We inhibit the expression of these proteins: ribonuclearprotein La, lamin A/C, oxygen-regulated protein 150kDa, molecular chaperone DNA K, chaperonin GroEL and the lamin B2 protein. We then analysed the changes in the HDV mRNA level under these conditions. The results indicated a drastic decrease in the HDV mRNA level in the cells where the expression of the lamin B2 was decreased. Whereas, in the cells in which we repressed the expression of the lamin A/C we observed only a slight increase in the HDV mRNA level. We then analysed the changes in the expression of the HDV antigens by western blot. We observed a decrease in the expression levels of both the HDV antigens only when we repressed the expression of the lamin B2 protein. However the levels of the large antigen were found to be downregulated when we inhibit the expression of the ribonuclearprotein La, the molecular chaperone DNA K, the oxygen-regulated protein 150kDa and the chaperonin GroEL. This work constitutes a first approach to understand the cellular changes that occur during the HDV replication that might explain the increase in symptom severity in HDV infected patients. We identified several proteins involved in the replication of other hepatitis viruses and in the development of carcinoma. Several of the upregulated proteins appear to be important in the HDV replication cycle. Thus providing additional information to further investigate and identify novel therapeutic targets.
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- 2009
30. Genomic Approaches for Detection and Treatment of Breast Cancer
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BRIGHAM AND WOMEN'S HOSPITAL BOSTON MA, Elledge, Stephen J., BRIGHAM AND WOMEN'S HOSPITAL BOSTON MA, and Elledge, Stephen J.
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A key part of our research plan has been the development and use of retroviral vectors expressing RNA interference RNAs to identify human genes involved in causing or restraining cancer. In our first progress reports we described our efforts to develop shRNA libraries and showed they could be used to identify tumor suppressors. Ultimately our goal is to screen of complex pools of shRNA expressing retroviruses each marked with a bar code that allows the results of the screen to be read out by microarray hybridization. We demonstrated this could be accomplished in enrichment screens for shRNAs that caused cellular transformation and growth in soft agar. However, a key goal has been to identify shRNAs that debilitate or kill cancer cells. In order for this to be possible in complex pools, it is imperative that each vector knock down its target with high penetrance. We have successfully achieved this level of knockdown and can now see particular shRNA expressing viruses drop out of complex pools. We have used this methodology to search for genes whose knockdown enhance the proliferative capacity of normal breast epithelial cells, i.e. candidate tumor suppressors and genes whose knockdown are cancer specific lethals., The original document contains color images.
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- 2008
31. Characterizing mRNA Sequence Motifs in the 3'-UTR Using GFP Reporter Constructs.
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Geissler R and Grimson A
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- Base Sequence genetics, Cell Line, Fluorescence, Genes, Reporter, Genomics methods, Humans, Protein Biosynthesis genetics, RNA Processing, Post-Transcriptional, RNA, Messenger chemistry, RNA, Messenger metabolism, 3' Untranslated Regions genetics, Green Fluorescent Proteins chemistry, RNA Stability genetics, RNA, Messenger genetics, Sequence Analysis, RNA methods
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GFP reporter constructs are widely used as an expression system for studying the function of regulatory sequence motifs (cis elements) within the 3'-UTRs (3' untranslated regions) of mRNAs. Here we provide details on the characterization of individual sequence motifs, which typically regulate mRNA decay and translation. In addition, we describe methods to identify trans factors required for the function of such elements. To facilitate efficient identification of novel functional 3'-UTR motifs, we describe a screening approach based on dual-color fluorescence reporter constructs. Such screening approaches can be used to test large collections of defined sequence or libraries of random sequences.
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- 2018
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32. RNA Interference-Mediated Gene Silencing in Esophageal Adenocarcinoma.
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Islam F, Gopalan V, and Lam AK
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- Adenocarcinoma genetics, Cell Culture Techniques instrumentation, Cell Culture Techniques methods, Cell Line, Tumor, Esophageal Neoplasms genetics, Gene Expression Regulation, Neoplastic genetics, Gene Knockdown Techniques instrumentation, Genetic Therapy instrumentation, Genetic Therapy methods, Genetic Vectors genetics, Genetic Vectors therapeutic use, Humans, Lentivirus genetics, Proto-Oncogene Mas, Signal Transduction genetics, Transfection instrumentation, Transfection methods, Adenocarcinoma therapy, Esophageal Neoplasms therapy, Gene Knockdown Techniques methods, Proto-Oncogene Proteins c-met genetics, RNA Interference, RNA, Small Interfering metabolism
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RNA interference (RNAi) is a normal physiological mechanism in which a short effector antisense RNA molecule regulates target gene expression. It is a powerful tool to silence a particular gene of interest in a sequence-specific manner and can be used to target against various molecular pathways in esophageal adenocarcinoma by designing RNAi targeting key pathogenic genes. RNAi-based therapeutics against esophageal adenocarcinoma can be developed using different strategies including inhibition of overexpressed oncogenes, blocking cell division by interfering cyclins and related genes or enhancing apoptosis by suppressing anti-apoptotic genes. In addition, RNAi against multidrug resistance genes or chemo-resistance targets may provide promising cancer therapeutic options. Here, we describe RNAi technology using MET, a proto-oncogene in esophageal adenocarcinoma cells, as a model target. Lentiviral particles expressing MET shRNA was used to silence MET genes. Then, Western blot analysis was performed to confirm MET knockdown.
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- 2018
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33. Induction of Transcriptional Gene Silencing by Expression of shRNA Directed to c-Myc P2 Promoter in Hepatocellular Carcinoma by Tissue-Specific Virosomal Delivery.
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Zakaria MK, Sarkar DP, and Chattopadhyay P
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- Cell Line, Tumor, Cells, Cultured, CpG Islands, DNA Methylation, Humans, RNA, Small Interfering administration & dosage, Transfection methods, Virosomes, Carcinoma, Hepatocellular genetics, Gene Silencing, Gene Transfer Techniques, Genes, myc, Liver Neoplasms genetics, Promoter Regions, Genetic, RNA, Small Interfering genetics
- Abstract
Double-stranded RNA-mediated transcriptional gene silencing (TGS) has shown promising results over posttranscriptional gene silencing (PTGS) due to its long term and heritable nature. Various research groups have shed light on different mechanisms by which TGS operate. Some of these include histone modification, DNA methylation, or restriction of RNA polymerase binding onto the target gene's promoter. This serves as an added advantage since permanent c-Myc inactivation is critical for suppressing hepatocellular carcinoma (HCC). Inability to target cancer cells specifically, without affecting the normal cells, has been one of the biggest drawbacks of an effective cancer therapy. Therefore, we aimed to overcome this barrier by first generating tumor-specific transcriptional units expressing TGS inducing shRNAs against c-Myc's P2 promoter only in neoplastic liver cells. Secondly, we coupled this TGS inducing system with Sendai fusion virosomes for liver-specific delivery to minimize nonspecific side effects in vitro.
- Published
- 2017
- Full Text
- View/download PDF
34. The lectin-like oxidized LDL receptor-1: a new potential molecular target in colorectal cancer.
- Author
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Murdocca M, Mango R, Pucci S, Biocca S, Testa B, Capuano R, Paolesse R, Sanchez M, Orlandi A, di Natale C, Novelli G, and Sangiuolo F
- Subjects
- Adenocarcinoma metabolism, Aged, Cell Movement, Cell Proliferation, Cell Transformation, Neoplastic metabolism, Colorectal Neoplasms metabolism, Female, Follow-Up Studies, Humans, Lymphatic Metastasis, Male, Neoplasm Staging, Prognosis, Survival Rate, Tumor Cells, Cultured, Adenocarcinoma secondary, Biomarkers, Tumor metabolism, Cell Transformation, Neoplastic pathology, Colorectal Neoplasms pathology, Scavenger Receptors, Class E metabolism
- Abstract
The identification of new biomarkers and targets for tailored therapy in human colorectal cancer (CRC) onset and progression is an interesting challenge. CRC tissue produces an excess of ox-LDL, suggesting a close correlation between lipid dysfunction and malignant transformation. Lectin-like oxidized LDL receptor-1 (LOX-1) is involved in several mechanisms closely linked to tumorigenesis. Here we report a tumor specific LOX-1 overexpression in human colon cancers: LOX-1 results strongly increased in the 72% of carcinomas (P<0.001), and strongly overexpressed in 90% of highly aggressive and metastatic tumours (P<0.001), as compared to normal mucosa. Moreover LOX-1 results modulated since the early stage of the disease (adenomas vs normal mucosa; P<0.001) suggesting an involvement in tumor insurgence and progression. The in vitro knockdown of LOX-1 in DLD-1 and HCT-8 colon cancer cells by siRNA and anti-LOX-1 antibody triggers to an impaired proliferation rate and affects the maintenance of cell growth and tumorigenicity. The wound-healing assay reveals an evident impairment in closing the scratch. Lastly knockdown of LOX-1 delineates a specific pattern of volatile compounds characterized by the presence of a butyrate derivative, suggesting a potential role of LOX-1 in tumor-specific epigenetic regulation in neoplastic cells. The role of LOX-1 as a novel biomarker and molecular target represents a concrete opportunity to improve current therapeutic strategies for CRC. In addition, the innovative application of a technology focused to the identification of LOX-1 driven volatiles specific to colorectal cancer provides a promising diagnostic tool for CRC screening and for monitoring the response to therapy.
- Published
- 2016
- Full Text
- View/download PDF
35. Regulation of cell proliferation and migration in gallbladder cancer by zinc finger X-chromosomal protein.
- Author
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Tan Z, Zhang S, Li M, Wu X, Weng H, Ding Q, Cao Y, Bao R, Shu Y, Mu J, Ding Q, Wu W, Yang J, Zhang L, and Liu Y
- Subjects
- Cell Line, Tumor, Gallbladder Neoplasms, Gene Expression, Gene Knockdown Techniques, Humans, Matrix Metalloproteinase 2 genetics, Matrix Metalloproteinase 2 metabolism, Matrix Metalloproteinase 9 genetics, Matrix Metalloproteinase 9 metabolism, RNA, Small Interfering genetics, Cell Movement, Cell Proliferation, Kruppel-Like Transcription Factors genetics, Kruppel-Like Transcription Factors metabolism
- Abstract
Gallbladder carcinoma (GBC) is one of the mostly aggressive and fatal malignancies. However, little is known about the oncogenic genes that contributed to the development of GBC. Zinc finger X-chromosomal protein (ZFX) was a novel member of the Krueppel C2H2-type zinc-finger protein family and its down-regulation led to impaired cell growth in human laryngeal squamous cell carcinoma. Here, we aim to investigate the function of ZFX in GBC cell proliferation and migration. Loss of function analysis was performed on GBC cell line (GBC-SD) using lentivirus-mediated siRNA against ZFX. The proliferation, in vitro tumorigenesis (colony-formation) ability as well as cell migration was significantly suppressed after GBC-SD cells which were infected with ZFX-siRNA-expressing lentivirus (Lv-shZFX). Our finding suggested that ZFX promoted the growth and migration of GBC cells and could present a potential molecular target for gene therapy of GBC., (© 2013.)
- Published
- 2013
- Full Text
- View/download PDF
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