43 results on '"short consensus repeat"'
Search Results
2. L-Selectin (CD62L) and Its Ligands
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Gupta, G. S. and Gupta, G. S.
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- 2012
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3. The Role of CD97 in Regulating Adaptive T-Cell Responses
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Spendlove, Ian, Sutavani, Ruhcha, Yona, Simon, editor, and Stacey, Martin, editor
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- 2010
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4. Endothelial Activation in Inflammation: Lessons Learned from E-Selectin
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Haskard, Dorian O., Abraham, David, editor, Dashwood, Michael, editor, Handler, Clive, editor, and Coghlan, Gerry, editor
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- 2008
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5. A Minimum CR2 Binding Domain of C3d Enhances Immunity Following Vaccination
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Bower, Joseph F., Ross, Ted M., Back, Nathan, editor, Cohen, Irun R., editor, Kritchevsky, David, editor, Lajtha, Abel, editor, Paoletti, Rodolfo, editor, and Lambris, John D., editor
- Published
- 2006
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- View/download PDF
6. The Role of Complement in Innate and Adaptive Immunity
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Volanakis, J. E., Compans, R. W., editor, Cooper, Max D., editor, Ito, Y., editor, Koprowski, H., editor, Melchers, F., editor, Oldstone, M. B. A., editor, Olsnes, S., editor, Potter, M., editor, Vogt, P. K., editor, Wagner, H., editor, and Koprowski, Hilary, editor
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- 2002
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7. Human C4BP Binds to the Hypervariable N-Terminal Region of Many Members in the Streptococcal M Protein Family
- Author
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Johnsson, Eskil, Thern, Anette, Dahlbäck, Björn, Hedén, Lars-Olof, Wikström, Mats, Lindahl, Gunnar, Horaud, Thea, editor, Bouvet, Anne, editor, Leclercq, Roland, editor, de Montclos, Henri, editor, and Sicard, Michel, editor
- Published
- 1997
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8. Identification and Biology of Cellular Receptors for the Coxsackie B Viruses Group
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Kuhn, R. J., Compans, R. W., editor, Cooper, M., editor, Hogle, J. M., editor, Koprowski, H., editor, Ito, Y., editor, Melchers, F., editor, Oldstone, M., editor, Olsnes, S., editor, Potter, M., editor, Saedler, H., editor, Vogt, P. K., editor, Wagner, H., editor, Tracy, Steven, editor, Chapman, Nora M., editor, and Mahy, Brian W. J., editor
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- 1997
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9. L-Selectin, a Lectin-Like Receptor Involved in Normal Lymphocyte Recirculation and Inflammatory Leukocyte Trafficking
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Rosen, Steven D., Goldstein, Allan L., editor, Kumar, Ajit, editor, Bailey, J. Martyn, editor, and Gallo, Linda L., editor
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- 1995
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10. The Role of Adhesion Molecules in Acute Lung Injury
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Ridings, P., Fowler, A. A., and Vincent, Jean-Louis, editor
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- 1995
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11. Immune Complex Mediated Diseases
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Sedlacek, H.-Harald, Möröy, Tarik, Sedlacek, H.-Harald, and Möröy, Tarik
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- 1995
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12. Complement Receptor Type 1
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Ross, G. D., Compans, R. W., editor, Cooper, M., editor, Koprowski, H., editor, McConnell, I., editor, Melchers, F., editor, Nussenzweig, V., editor, Oldstone, M., editor, Olsnes, S., editor, Potter, M., editor, Saedler, H., editor, Vogt, P. K., editor, Wagner, H., editor, Wilson, I., editor, and Parker, Charles J., editor
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- 1992
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13. Complement Receptor Type 1 (C3b/C4b Receptor; CD35) and Complement Receptor Type 2 (C3d/Epstein-Barr Virus Receptor; CD21)
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Fearon, D. T., Ahearn, J. M., Compans, R. W., editor, Cooper, M., editor, Koprowski, H., editor, McConnell, I., editor, Melchers, F., editor, Nussenzweig, V., editor, Oldstone, M., editor, Olsnes, S., editor, Saedler, H., editor, Vogt, P. K., editor, Wagner, H., editor, Wilson, I., editor, and Lambris, John D., editor
- Published
- 1990
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14. Towards the Structure of Mosaic Proteins: Use of Protein Expression and NMR Techniques
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Baron, Martin, Kingsman, Alan J., Kingsman, Susan M., Campbell, Iain D., and Harris, T. J. R., editor
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- 1990
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15. The Central Portion of Factor H (Modules 10–15) Is Compact and Contains a Structurally Deviant CCP Module
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Schmidt, Christoph Q., Herbert, Andrew P., Mertens, Haydyn D.T., Guariento, Mara, Soares, Dinesh C., Uhrin, Dusan, Rowe, Arthur J., Svergun, Dmitri I., and Barlow, Paul N.
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PROTEIN research , *BINDING sites , *COMPLEMENT (Immunology) , *NUCLEAR magnetic resonance , *ULTRACENTRIFUGATION , *SMALL-angle X-ray scattering , *OVERHAUSER effect (Nuclear physics) - Abstract
Abstract: The first eight and the last two of 20 complement control protein (CCP) modules within complement factor H (fH) encompass binding sites for C3b and polyanionic carbohydrates. These binding sites cooperate self-surface selectively to prevent C3b amplification, thus minimising complement-mediated damage to host. Intervening fH CCPs, apparently devoid of such recognition sites, are proposed to play a structural role. One suggestion is that the generally small CCPs 10–15, connected by longer-than-average linkers, act as a flexible tether between the two functional ends of fH; another is that the long linkers induce a 180° bend in the middle of fH. To test these hypotheses, we determined the NMR-derived structure of fH12–13 consisting of module 12, shown here to have an archetypal CCP structure, and module 13, which is uniquely short and features a laterally protruding helix-like insertion that contributes to a prominent electropositive patch. The unusually long fH12–13 linker is not flexible. It packs between the two CCPs that are not folded back on each other but form a shallow vee shape; analytical ultracentrifugation and X-ray scattering supported this finding. These two techniques additionally indicate that flanking modules (within fH11–14 and fH10–15) are at least as rigid and tilted relative to neighbours as are CCPs 12 and 13 with respect to one another. Tilts between successive modules are not unidirectional; their principal axes trace a zigzag path. In one of two arrangements for CCPs 10–15 that fit well with scattering data, CCP 14 is folded back onto CCP 13. In conclusion, fH10–15 forms neither a flexible tether nor a smooth bend. Rather, it is compact and has embedded within it a CCP module (CCP 13) that appears to be highly specialised given both its deviant structure and its striking surface charge distribution. A passive, purely structural role for this central portion of fH is unlikely. [Copyright &y& Elsevier]
- Published
- 2010
- Full Text
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16. Expression, purification, cocrystallization and preliminary crystallographic analysis of sucrose octasulfate/human complement regulator factor H SCRs 6–8.
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Clark, Simon J., Prosser, Beverly E., Johnson, Steven, Roversi, Pietro, Tarelli, Edward, Sim, Robert B., Day, Antony J., and Lea, Susan M.
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CRYSTALLOGRAPHY , *SUCROSE , *BLOOD proteins , *RETINAL degeneration , *GLYCOSAMINOGLYCANS - Abstract
Human plasma protein complement factor H (FH) is an inhibitor of the spontaneously activated alternative complement pathway. An allotypic variant of FH, 402His, has been associated with age-related macular degeneration, the leading cause of blindness in the elderly. Crystals of FH domains 6–8 (FH678) containing 402His have been grown in the presence of a polyanionic sucrose octasulfate ligand (an analogue of the natural glycosaminoglycan ligands of FH) using both native and selenomethionine-derivatized protein. Native data sets diffracting to 2.3 Å and SeMet data sets of up to 2.8 Å resolution have been collected. An anomalous difference Patterson map reveals self- and cross-peaks from two incorporated Se atoms. The corresponding selenium substructure has been solved. [ABSTRACT FROM AUTHOR]
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- 2007
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17. The short consensus repeats 1 and 2, not the cytoplasmic domain, of human CD46 are crucial for infection of subgroup B adenovirus serotype 35
- Author
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Sakurai, Fuminori, Murakami, Sayaka, Kawabata, Kenji, Okada, Naoki, Yamamoto, Akira, Seya, Tsukasa, Hayakawa, Takao, and Mizuguchi, Hiroyuki
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GENE therapy , *CELL membranes , *ADENOVIRUSES , *DNA viruses - Abstract
Abstract: Human CD46 (membrane cofactor protein) has recently been identified to be an attachment receptor for subgroup B adenoviruses (Ads); however, the precise interaction between human CD46 and subgroup B Ads are just beginning to be understood. In this study, to characterize the interaction between human CD46 and subgroup B Ads, varieties of mutant CD46 were tested for their ability to act as a receptor for Ad serotype 35 (Ad35), which belongs to subgroup B. In addition, we determined Ad35 vector-mediated transgene expression and cellular uptake of Ad35 vectors in the presence of a set of anti-CD46 antibodies. Our data demonstrated that the short consensus repeats (SCRs) 1 and 2 in human CD46 are important for interaction with Ad35, whereas the cytoplasmic domain of human CD46 was found not to be required for the function as an Ad35 receptor. Rather, a complete deletion of the cytoplasmic domain of human CD46 increased the transduction efficiencies of Ad35 vectors. This information should help in elucidation of the mechanism of subgroup B Ad infection, as well in the improvement of the subgroup B Ad vectors. [Copyright &y& Elsevier]
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- 2006
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18. Regulation of the Complement System by Pentraxins
- Author
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Haapasalo, Karita, Meri, Seppo, Department of Bacteriology and Immunology, TRIMM - Translational Immunology Research Program, Research Programs Unit, Medicum, University of Helsinki, HUSLAB, and Seppo Meri / Principal Investigator
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age-related macular degeneration (AMD) ,factor H-related protein ,complement C1q ,CRP-C-reactive protein ,complement factor H ,cholesterol ,AMYLOID-P COMPONENT ,HEPARIN-BINDING ,MACULAR DEGENERATION ,ALTERNATIVE PATHWAY ,BRUCHS MEMBRANE ,C-REACTIVE-PROTEIN ,innate ,SHORT CONSENSUS REPEAT ,HEMOLYTIC-UREMIC SYNDROME ,APOPTOTIC CELLS ,3111 Biomedicine ,FACTOR-H POLYMORPHISM ,PTX3 - Abstract
The functions of pentraxins, like C-reactive protein (CRP), serum amyloid protein P (SAP) and pentraxin-3 (PTX3), are to coordinate spatially and temporally targeted clearance of injured tissue components, to protect against infections and to regulate related inflammation together with the complement system. For this, pentraxins have a dual relationship with the complement system. Initially, after a focused binding to their targets, e.g., exposed phospholipids or cholesterol in the injured tissue area, or microbial components, the pentraxins activate complement by binding its first component C1q. However, the emerging inflammation needs to be limited to the target area. Therefore, pentraxins inhibit complement at the C3b stage to prevent excessive damage. The complement inhibitory functions of pentraxins are based on their ability to interact with complement inhibitors C4bp or factor H (FH). C4bp binds to SAP, while FH binds to both CRP and PTX3. FH promotes opsonophagocytosis through inactivation of C3b to iC3b, and inhibits AP activity thus preventing formation of the C5a anaphylatoxin and the complement membrane attack complex (MAC). Monitoring CRP levels gives important clinical information about the extent of tissue damage and severity of infections. CRP is a valuable marker for distinguishing bacterial infections from viral infections. Disturbances in the functions and interactions of pentraxins and complement are also involved in a number of human diseases. This review will summarize what is currently known about the FH family proteins and pentraxins that interact with FH. Furthermore, we will discuss diseases, where interactions between these molecules may play a role.
- Published
- 2019
19. Structure of the human β2‐glycoprotein I (apolipoprotein H) gene*.
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Okkels, Henrik, Rasmussen, Thomas E., Sanghera, Dharambir K., Kamboh, M. Ilyas, and Kristensen, Torsten
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GLYCOPROTEINS , *BLOOD proteins , *BIOCHEMISTRY , *CHEMICAL structure - Abstract
The gene encoding the human plasma protein β2‐glycoprotein I or apolipoprotein H was cloned and its structure determined. The gene which consists of eight exons was shown to span 18 kb and was localized to chromosome 17q23‐24. The transcriptional initiation site was assigned to a position 31 bp upstream of the start codon. Several consensus sequence elements relevant for regulation of transcription in liver were seen in the 5′‐upstream region of the gene. Exon 1 contains the 5′‐UTR together with the signal peptide coding sequences. Short consensus repeats (SCRs) 1, 3, 4, and 5 are encoded by single exons each while SCR2 is encoded by two exons. Exon 8 comprises the region encoding the C‐terminal end of β2‐glycoprotein I (from His‐310), the stop codon and the 3′‐UTR. [ABSTRACT FROM AUTHOR]
- Published
- 1999
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20. Crystal structure of human ß2-glycoprotein I: implications for phospholipid binding and the antiphospholipid syndrome.
- Author
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Schwarzenbacher, Robert, Zeth, Kornelius, Diederichs, Kay, Gries, Anna, Kostner, Gerhard M., Laggner, Peter, and Prassl, Ruth
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IMMUNOGLOBULINS , *CARDIOVASCULAR diseases , *AMINO acids , *GLYCOPROTEINS , *AUTOANTIBODIES , *ANTIPHOSPHOLIPID syndrome - Abstract
The high affinity of human plasma Β2-glycoprotein I (Β2GPI), also known as apolipoprotein-H (Aport), for negatively charged phospholipids determines its implication in a variety of physiological pathways, including blood coagulation and the immune response. Β2GPI is considered to be a cofactor for the binding of serum autoantibodies from antiphospholipid syndrome (APS) and correlated with thrombosis, lupus erythematosus and recurrent fetal loss. We solved the Β2GPI structure from a crystal form with 84% solvent and present a model containing all 326 amino acid residues and four glycans. The structure reveals four complement control protein modules and a distinctly folding fifth C-terminal domain arranged like beads on a string to form an elongated J-shaped molecule. Domain V folds into a central Β-spiral of four antiparallel Β-sheets with two small helices and an extended C-terminal loop region. It carries a distinct positive charge and the sequence motif CKNKEKKC close to the hydrophobic loop composed of residues LAFW (313–316), resulting in an excellent counterpart for interactions with negatively charged amphiphilic substances. The Β2GPI structure reveals potential autoantibody-binding sites and supports mutagenesis studies where Trp316 and CKNKEKKC have been found to be essential for the phospholipid-binding capacity of Β2GPI. [ABSTRACT FROM AUTHOR]
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- 1999
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21. Adhesion mechanism of human ß2-glycoprotein I to phospholipids based on its crystal structure.
- Author
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Bouma, Barend, de Groot, Philip G., van den Elsen, Jean M. H., Ravelli, Raimond B. G., Schouten, Arie, Simmelink, Marleen J. A., Derksen, Ronald H. W. M., Kroon, Jan, and Gros, Piet
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PHOSPHOLIPID antibodies , *APOLIPOPROTEINS , *GLYCOPROTEINS , *CELL membranes , *PROTEINS , *PHOSPHOLIPIDS - Abstract
Human β2-glycoprotein I is a heavily glycosylated five-domain plasma membrane-adhesion protein, which has been implicated in blood coagulation and clearance of apoptotic bodies from the circulation. It is also the key antigen in the autoimmune disease antiphospholipid syndrome. The crystal structure of β2-glycoprotein I isolated from human plasma revasls an elongated fish-hook-like arrangement of the globular short consensus repeat domains. Half of the C-terminal fifth domain deviates strongly from the standard fold, as observed in domains one to four. This aberrant half forms a specific phospholipidbinding sits. A large patch of 14 positively charged residues provides electrostatic interactions with anionic phospholipid head groups and an exposed membrane-insertion loop yields specificity for lipid layers. The observed spatial arrangement of the five domains suggests a functional partitioning of protein adhesion and membrane adhesion over the N- and C-terminal domains, respectively, separated by glycosylated bridging domains. Coordinates are in the Protein Data Bank (accession No. 1QUB). [ABSTRACT FROM AUTHOR]
- Published
- 1999
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- View/download PDF
22. Crystal structure of two CD46 domains reveals an extended measles virus-binding surface.
- Author
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Casasnovas, José M., Larvie, Mykol, and Stehle, Thilo
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- *
MEASLES virus , *GLYCOPROTEINS , *CELL receptors , *CELL membranes , *CRYSTALLOGRAPHY , *BINDING sites - Abstract
Measles virus is a paramyxovirus which, like other members of the family such as respiratory syncytial virus, is a major cause of morbidity and mortality worldwide. The cell surface receptor for measles virus in humans is CD46, a complement cofactor. We report here the crystal structure at 3.1 Å resolution of the measles virus-binding fragment of CD46. The structure reveals the architecture and spatial arrangement of two glycosylated short consensus repeats with a pronounced interdomain bend and some flexibility at the domain interface. Amino acids involved in measles virus binding define a large, glycan-free surface that extends from the top of the first to the bottom of the second repeat. The extended virus-binding surface of CD46 differs strikingly from those reported for the human virus receptor proteins CD4 and intercellular cell adhesion molecule-1 (ICAM-1), suggesting that the CD46 structure utilizes a novel mode of virus recognition. A highly hydrophobic and protruding loop at the base of the first repeat bears a critical virus-binding residue, thereby defining an important recognition epitope. Molecules that mimic the conformation of this loop potentially could be effective anti-viral agents by preventing binding of measles virus to CD46. [ABSTRACT FROM AUTHOR]
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- 1999
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23. Molecular cloning of murine decay accelerating factor by immunoscreening.
- Author
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Fukuoka, Yoshihiro, Yasui, Akira, Okada, Noriko, and Okada, Hidechika
- Abstract
Although the cDNA of human decay accelerating factor (DAF) which restricts complement activation on homologous cell membranes was cloned in 1987, all trials to detect the cDNA of mouse DAF by cross-hybridization were unsuccessful. However, by immunoscreening with a rabbit antiserum against purified mouse DAF, we successfully cloned the cDNA. It contains four typical short consensus repeats (SCR) similar to that In human and guinea pig DAF. The base sequence showed 63.7 and 63.8% identIty to that of human and guinea pig DAF respectively. The deduced amino acid sequence identity to human and guinea pig DAF was 47.2 and 46.5% respectively. Mouse complement receptor related gene Y (Crry)/p65 function is comparable to DAF. SCR3 and SCR4 of mouse DAF showed 50% identity to SCR2 and SCR3 of Crty/p65 respectively. IdentificatIon of the mouse DAF gene should open a new approach for determining the actual in vlvo role of DAF by analyzing autoimmune mice as well as generating DAF gene knockout mice using embryonic stem cells. [ABSTRACT FROM AUTHOR]
- Published
- 1996
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24. Molecular characterization of a novel serine protease involved in activation of the complement system by mannose-binding protein.
- Author
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Sato, Tetsuo, Endo, Yuichi, Matsushita, Misao, and Fujita, Teizo
- Abstract
Mannose-binding protein (MBP) plays an important role in host defense by recognizing sugar residues on certain pathogens and activating the complement cascade. Recently, we described a new protease, designated MBP-assoclated serine protease (MASP) which is required for complement activation by MBP. We have cloned the cDNA that encodes this protease and found that the deduced amino acid sequence contains an epidermal growth factor-like domain, two short consensus repeats and a serine protease domain. The overall structure of MASP is similar to serine proteases of the first complement component complex, C1r–C1s. Unlike C1r–C1s, however, MASP has a hlstidlne loop structure common to many serine proteases such as trypsin and chymotrypsin. The MASP gene was mapped on the long arm of chromosome 3 which is different from C1r–C1s as well as from trypsin and chymotrypsin. These findings suggest that MASP may have emerged prior to C1r–C1s from a common ancestor. This implies that MBP–MASP, a complex of lectin and serine protease, presumably evolved prior to adaptive immune recognition involving antibody and the classical complement pathway. [ABSTRACT FROM PUBLISHER]
- Published
- 1994
25. Ligand specificities of mouse complement receptor types 1 (CR1) and 2 (CR2) purified from spleen cells.
- Author
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Pramoonjago, Patcharin, Takeda, Junjl, Kim, Youn Uck, Inoue, Kozo, and Kinoshita, Taroh
- Abstract
Murine complement receptor type 2 (MCR2) is homologous to human CR2, whereas murine CR1 (MCR1) is structurally and evolutionary different from human CR1. Since ligand specificities of MCR1 and MCR2 are not completely clarified, we analyzed their functional characteristics to correlate them with structural information obtained in molecular biological studies. MCR1 and MCR2 purified from spleen cells were incubated with thlol-Sepharose bearing murine C3b, IC3b, or C3d in the presence or absence of various anti-MCR1 or-MCR1/MCR2 mAbs. Bound and free MCR1 and MCR2 were quantitated by Western biotting or two-site immunoradiometric assay. MCR2 bound to C3d and IC3b similarly efficiently, and 5-fold less efficiently to C3b. These bindings were completely inhibited by MCR1/MCR2-crossreactive antibodies 7G6 and 4E3. MCR1 bound to C3b efficiently and this was partially inhibited by MCR1-monospecific antibody 8C12, but not by 7G6 and 4E3. Combinations of 8C12 and 7G6 or 4E3 completely inhibited MCR1 binding to C3b. Therefore, two binding sites, one unique to MCR1 and the other shared with MCR2, are involved in MCR1 binding to C3b. MCR1 bound also to C3d and this was completely inhibited by 7G6 and 4E3. The binding of this solubilized MCR1 to C3d was as efficient as that of MCR2 to C3d. It seems, therefore, that the site shared by MCR1 and MCR2 that is recognized by both 7G6 and 4E3 binds to C3d and less efficiently to C3b. These results clarify the ligand specificities of MCR1 and MCR2. [ABSTRACT FROM PUBLISHER]
- Published
- 1993
26. The Regulators of Complement Activation (RCA) Gene Cluster
- Author
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Hourcade, D., Atkinson, J. P., Melchers, Fritz, editor, Albert, E. D., editor, von Boehmer, H., editor, Dierich, M. P., editor, Du Pasquier, L., editor, Eichmann, K., editor, Gemsa, D., editor, Götze, O., editor, Kalden, J. R., editor, Kaufmann, S. H. E., editor, Kirchner, H., editor, Resch, K., editor, Riethmüller, G., editor, Schimpl, A., editor, Sorg, C., editor, Steinmetz, M., editor, Wagner, H., editor, and Zachau, H. G., editor
- Published
- 1989
- Full Text
- View/download PDF
27. The Central Portion of Factor H (Modules 10–15) Is Compact and Contains a Structurally Deviant CCP Module
- Author
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Dmitri I. Svergun, Dušan Uhrín, Andrew P. Herbert, Mara Guariento, Arthur J. Rowe, Paul N. Barlow, Christoph Q. Schmidt, Haydyn D. T. Mertens, and Dinesh C. Soares
- Subjects
Models, Molecular ,Magnetic Resonance Spectroscopy ,fB, complement factor B ,Molecular Sequence Data ,PBS, phosphate-buffered saline ,Protein Data Bank (RCSB PDB) ,Topology ,Article ,CCP, complement control protein ,Protein Structure, Secondary ,X-Ray Diffraction ,PDB, Protein Data Bank ,Structural Biology ,Scattering, Small Angle ,Humans ,Amino Acid Sequence ,NOE, nuclear Overhauser effect ,Pliability ,Short Consensus Repeat ,Molecular Biology ,complement system ,AUC, analytical ultracentrifugation ,Chemistry ,SAXS, small-angle X-ray scattering ,EOM, even-and-odd mode ,HSQC, heteronuclear single quantum coherence ,fH, complement factor H ,short consensus repeat ,TOCSY, total correlated spectroscopy ,Solutions ,Crystallography ,Zigzag ,Complement Factor H ,small-angle X-ray scattering ,Chromatography, Gel ,NMR structure ,SA, solvent-accessible surface area ,Linker ,Ultracentrifugation ,analytical ultracentrifugation ,Heteronuclear single quantum coherence spectroscopy - Abstract
The first eight and the last two of 20 complement control protein (CCP) modules within complement factor H (fH) encompass binding sites for C3b and polyanionic carbohydrates. These binding sites cooperate self-surface selectively to prevent C3b amplification, thus minimising complement-mediated damage to host. Intervening fH CCPs, apparently devoid of such recognition sites, are proposed to play a structural role. One suggestion is that the generally small CCPs 10–15, connected by longer-than-average linkers, act as a flexible tether between the two functional ends of fH; another is that the long linkers induce a 180° bend in the middle of fH. To test these hypotheses, we determined the NMR-derived structure of fH12–13 consisting of module 12, shown here to have an archetypal CCP structure, and module 13, which is uniquely short and features a laterally protruding helix-like insertion that contributes to a prominent electropositive patch. The unusually long fH12–13 linker is not flexible. It packs between the two CCPs that are not folded back on each other but form a shallow vee shape; analytical ultracentrifugation and X-ray scattering supported this finding. These two techniques additionally indicate that flanking modules (within fH11–14 and fH10–15) are at least as rigid and tilted relative to neighbours as are CCPs 12 and 13 with respect to one another. Tilts between successive modules are not unidirectional; their principal axes trace a zigzag path. In one of two arrangements for CCPs 10–15 that fit well with scattering data, CCP 14 is folded back onto CCP 13. In conclusion, fH10–15 forms neither a flexible tether nor a smooth bend. Rather, it is compact and has embedded within it a CCP module (CCP 13) that appears to be highly specialised given both its deviant structure and its striking surface charge distribution. A passive, purely structural role for this central portion of fH is unlikely.
- Published
- 2010
- Full Text
- View/download PDF
28. Interdomain Contact Regions and Angles Between Adjacent Short Consensus Repeat Domains
- Author
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T. Sakari Jokiranta, Seppo Meri, and Markus J. Lehtinen
- Subjects
Repetitive Sequences, Amino Acid ,Amino Acid Motifs ,Molecular Sequence Data ,Static Electricity ,Hinge ,behavioral disciplines and activities ,Structural Biology ,Orientation (geometry) ,Consensus Sequence ,Humans ,Amino Acid Sequence ,Twist ,Molecular Biology ,Structural unit ,Short Consensus Repeat ,Human proteins ,Conserved Sequence ,Physics ,Binding Sites ,Skew ,Proteins ,Protein Structure, Tertiary ,Crystallography ,Mutation ,Domain (ring theory) ,Hydrophobic and Hydrophilic Interactions ,Sequence Alignment - Abstract
The short consensus repeat domain (SCR, complement control protein module, sushi-domain) is a structural unit found in multiple adjacent copies in more than 40 human proteins. Each bead-like domain is composed of approximately 60 residues and the adjacent domains are connected in a head-to-tail fashion with linkers that consist of two to 12 amino acid residues. Based on experimentally determined structures the neighbouring SCR domains interact with each other at the so-called hinge or interdomain contact region. The functions mediated by the SCR domains have been studied using mutagenesis but the possible effects of the mutations on the hinge regions and interdomain angles have not been analysed. In this study, the linker and three loops in conserved locations were found to be responsible for the interdomain contact regions of all the solved experimental structures. The interdomain contact regions were identified in sequences of 140 human SCR domain pairs, and distinct hydrophobic and charge features were found in different subsets of SCR proteins and functional domains. To compare the possible associations of the interdomain contact region characteristics to the interdomain orientations all the experimentally solved SCR structures were subjected to a uniform calculation of tilt, twist, and skew angles that define the interdomain orientation. The twist and skew angles were found to have a linear correlation and the spatial location of one loop of the N-terminal domain (N#1) was found to have an effect on the skew angle. Thus, we describe location of the interdomain contact regions in primary structures of SCR domains and report that the orientation of adjacent SCR domains is not random and depends partially on the interdomain contact regions. On the basis of these results, mutations within the interdomain contact regions and subsequent loss-of-function effects caused by changes in the interdomain orientation can be avoided in mutagenesis studies.
- Published
- 2004
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- View/download PDF
29. Each of the Three Binding Sites on Complement Factor H Interacts with a Distinct Site on C3b
- Author
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Peter F. Zipfel, Seppo Meri, Jens Hellwage, T. Sakari Jokiranta, and Vesa Koistinen
- Subjects
Repetitive Sequences, Amino Acid ,Stereochemistry ,chemical and pharmacologic phenomena ,Biosensing Techniques ,Cleavage (embryo) ,Biochemistry ,Consensus Sequence ,Humans ,Cloning, Molecular ,Binding site ,Surface plasmon resonance ,Molecular Biology ,Short Consensus Repeat ,Binding Sites ,Chemistry ,Cell Biology ,Surface Plasmon Resonance ,Molecular biology ,Peptide Fragments ,Recombinant Proteins ,Complement Factor H ,Factor H ,Complement C3b ,Alternative complement pathway ,Fluid phase ,circulatory and respiratory physiology - Abstract
Factor H (fH) restricts activation of the alternative pathway of complement at the level of C3, both in the fluid phase and on self-structures, but allows the activation to proceed on foreign structures. To study the interactions between fH and C3b we used surface plasmon resonance analysis (Biacore(R)) and eight recombinantly expressed fH constructs containing fragments of the 20 short consensus repeat domains (SCRs) of fH. We analyzed the binding of these constructs to C3b and its cleavage products C3c and C3d. Three binding sites for C3b were found on fH. Site 1 was localized to the five amino-terminal SCRs (SCR1-5), and its reciprocal binding site on C3b was found to be lost upon the cleavage of C3b to C3c and C3d. Site 2 on fH was localized by exclusion probably within or near SCRs 12-14 (fragment SCR8-20 bound to C3b, C3c, and C3d; SCR8-11 did not bind to C3b at all; and SCR15-20 bound only to the C3d part of C3b). Site 3 on fH for C3b was localized to the carboxyl-terminal SCRs 19-20, and its reciprocal binding site was mapped to the C3d part of C3b. In conclusion, we confirmed and mapped three binding sites on fH for C3b and demonstrated that the three binding sites on fH interact with distinct sites on C3b. Multiple reciprocal interactions between C3b and fH can provide a basis for the different reactivity of the alternative pathway with different target structures.
- Published
- 2000
- Full Text
- View/download PDF
30. Crystal structure of human β2-glycoprotein I: implications for phospholipid binding and the antiphospholipid syndrome
- Author
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Kornelius Zeth, Gerhard M. Kostner, Anna Gries, Ruth Prassl, Kay Diederichs, Peter Laggner, and Robert Schwarzenbacher
- Subjects
Models, Molecular ,Sushi domain ,Molecular Sequence Data ,Biology ,Crystallography, X-Ray ,Antiparallel (biochemistry) ,Protein Structure, Secondary ,General Biochemistry, Genetics and Molecular Biology ,Protein structure ,ddc:570 ,Computer Graphics ,Animals ,Humans ,Beta 2-Glycoprotein I ,Amino Acid Sequence ,Binding site ,apolipoprotein H (ApoH) ,sushi domain ,Molecular Biology ,Peptide sequence ,Glycoproteins ,Binding Sites ,Sequence Homology, Amino Acid ,General Immunology and Microbiology ,β2-glycoprotein I ,General Neuroscience ,short consensus repeat ,Apolipoproteins ,complement control protein ,Biochemistry ,beta 2-Glycoprotein I ,Phospholipid Binding ,Drosophila ,Sequence motif ,Sequence Alignment ,Research Article - Abstract
The high affinity of human plasma beta2-glycoprotein I (beta(2)GPI), also known as apolipoprotein-H (ApoH), for negatively charged phospholipids determines its implication in a variety of physiological pathways, including blood coagulation and the immune response. beta(2)GPI is considered to be a cofactor for the binding of serum autoantibodies from antiphospholipid syndrome (APS) and correlated with thrombosis, lupus erythematosus and recurrent fetal loss. We solved the beta(2)GPI structure from a crystal form with 84% solvent and present a model containing all 326 amino acid residues and four glycans. The structure reveals four complement control protein modules and a distinctly folding fifth C-terminal domain arranged like beads on a string to form an elongated J-shaped molecule. Domain V folds into a central beta-spiral of four antiparallel beta-sheets with two small helices and an extended C-terminal loop region. It carries a distinct positive charge and the sequence motif CKNKEKKC close to the hydrophobic loop composed of residues LAFW (313-316), resulting in an excellent counterpart for interactions with negatively charged amphiphilic substances. The beta(2)GPI structure reveals potential autoantibody-binding sites and supports mutagenesis studies where Trp316 and CKNKEKKC have been found to be essential for the phospholipid-binding capacity of beta(2)GPI.
- Published
- 1999
- Full Text
- View/download PDF
31. Three Dimensional Structrure of Sushi Domains
- Author
-
Yoshihisa Hagihara and Yuji Goto
- Subjects
Sushi domain ,Crystallography ,Chemistry ,Structure (category theory) ,Computational biology ,Short Consensus Repeat ,β2 glycoprotein i - Published
- 1999
- Full Text
- View/download PDF
32. Adhesion mechanism of human β2‐glycoprotein I to phospholipids based on its crystal structure
- Author
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Bouma, Barend, de Groot, Philip G., van den Elsen, Jean M.H., Ravelli, Raimond B.G., Schouten, Arie, Simmelink, Marleen J.A., Derksen, Ronald H.W.M., Kroon, Jan, and Gros, Piet
- Published
- 1999
- Full Text
- View/download PDF
33. Alternative splicing of repetitive units is responsible for the polydispersities of integumentary mucin B.1 (FIM-B.1) fromXenopus laevis
- Author
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Joba, Werner and Hoffmann, Werner
- Published
- 1996
- Full Text
- View/download PDF
34. Molecular cloning and mammalian expression of human β2-glycoprotein I cDNA
- Author
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Niels Møller, Torsten Nygaard Kristensen, Rita Rosendahl Hansen, Eileen M. Mulvihill, Karin Bach Møller, Esper Boel, Inger Schousboe, and Lars Sottrup-Jensen
- Subjects
Signal peptide ,Carcinoma, Hepatocellular ,Placenta ,Genetic Vectors ,Molecular Sequence Data ,Biophysics ,Expression ,β2-Glycoprotein I ,Biology ,Molecular cloning ,Transfection ,Biochemistry ,Rapid amplification of cDNA ends ,Pregnancy ,Structural Biology ,Complementary DNA ,Gene expression ,Tumor Cells, Cultured ,Genetics ,Baby hamster kidney cell ,Animals ,Humans ,Amino Acid Sequence ,Cloning, Molecular ,Molecular Biology ,Glycoproteins ,Homo sapiens ,Base Sequence ,Isoelectric focusing ,cDNA library ,Liver Neoplasms ,Cell Biology ,Blotting, Northern ,Molecular biology ,Recombinant Proteins ,Apolipoproteins ,Liver ,Oligodeoxyribonucleotides ,beta 2-Glycoprotein I ,Short consensus repeat ,Apolipoprotein H ,Female ,Cloning - Abstract
Human beta 2-glycoprotein (beta 2gpI) cDNA was isolated from a liver cDNA library and sequenced. The cDNA encoded a 19-residue hydrophobic signal peptide followed by the mature beta 2gpI of 326 amino acid residues. In liver and in the hepatoma cell line HepG2 there are two mRNA species of about 1.4 and 4.3 kb, respectively, hybridizing specifically with the beta 2gpI cDNA. Upon isoelectric focusing, recombinant beta 2gpI obtained from expression of beta 2gpI cDNA in baby hamster kidney cells showed the same pattern of bands as beta 2gpI isolated from plasma, and at least 5 polypeptides were visible.
- Published
- 1991
- Full Text
- View/download PDF
35. Binding of C4b-binding protein to porin: a molecular mechanism of serum resistance of Neisseria gonorrhoeae
- Author
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S, Ram, M, Cullinane, A M, Blom, S, Gulati, D P, McQuillen, B G, Monks, C, O'Connell, R, Boden, C, Elkins, M K, Pangburn, B, Dahlbäck, and P A, Rice
- Subjects
Complement Inactivator Proteins ,Base Sequence ,porin ,Molecular Sequence Data ,Porins ,C4b-binding protein ,Complement C4 ,short consensus repeat ,Neisseria gonorrhoeae ,Peptide Fragments ,serum resistance ,Cell Line ,Protein S ,Receptors, Complement ,Complement C4b ,Humans ,Original Article ,Amino Acid Sequence ,Glycoproteins - Abstract
We screened 29 strains of Neisseria gonorrhoeae and found 16/21 strains that resisted killing by normal human serum and 0/8 serum sensitive strains that bound the complement regulator, C4b-binding protein (C4bp). Microbial surface-bound C4bp demonstrated cofactor activity. We constructed gonococcal strains with hybrid porin (Por) molecules derived from each of the major serogroups (Por1A and Por1B) of N. gonorrhoeae, and showed that the loop 1 of Por1A is required for C4bp binding. Por1B loops 5 and 7 of serum-resistant gonococci together formed a negatively charged C4bp-binding domain. C4bp-Por1B interactions were ionic in nature (inhibited by high salt or by heparin), whereas the C4bp-Por1A bond was hydrophobic. Only recombinant C4bp mutant molecules containing the NH2-terminal alpha-chain short consensus repeat (SCR1) bound to both Por1A and Por1B gonococci, suggesting that SCR1 contained Por binding sites. C4bp alpha-chain monomers did not bind gonococci, indicating that the polymeric form of C4bp was required for binding. Using fAb fragments against C4bp SCR1, C4bp binding to Por1A and Por1B strains was inhibited in a complement-dependent serum bactericidal assay. This resulted in complete killing of these otherwise fully serum resistant strains in only 10% normal serum, underscoring the importance of C4bp in mediating gonococcal serum resistance.
- Published
- 2001
36. Complete primary structure of bovine beta 2-glycoprotein I: localization of the disulfide bridges
- Author
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Emoeke Bendixen, Lars Sottrup-Jensen, Torsten Nygaard Kristensen, Staffan Magnusson, and Torben Halkier
- Subjects
Base Sequence ,Protein Conformation ,Molecular Sequence Data ,Nucleic acid sequence ,Disulfide bond ,Protein primary structure ,DNA ,Biology ,Biochemistry ,Peptide Mapping ,beta 2-Glycoprotein I ,Complementary DNA ,Peptide sequencing ,Beta 2-Glycoprotein I ,Animals ,Cattle ,Amino Acid Sequence ,Disulfides ,Cloning, Molecular ,Beta (finance) ,Short Consensus Repeat ,Chromatography, High Pressure Liquid ,Glycoproteins ,Repetitive Sequences, Nucleic Acid - Abstract
The complete primary structure of bovine beta 2-glycoprotein I was determined by a combination of cDNA and peptide sequencing. Bovine beta 2-glycoprotein I was purified from citrated plasma, and by sequencing selected peptides, the complete disulfide bridge patterns of the 11 disulfide bridges were established as well as the positions of the five asparagine-linked carbohydrate groups. Bovine beta 2-glycoprotein I comprises five mutually homologous domains or Short Consensus Repeats, each containing two disulfide bridges, except for the fifth most C-terminal domain which diverges from the Short Consensus Repeat consensus by containing an additional disulfide bridge. In the four N-terminal domains, the first and third and the second and fourth half-cystines are disulfide-linked, while in the fifth domain the first and fourth, the second and fifth, and the third and sixth half-cystines are disulfide-linked.
- Published
- 1992
- Full Text
- View/download PDF
37. 1P082 Expression of the first three short consensus repeat modules, SCR1-3, of human complement receptor type 1 in CHO cell(Proteins-protein enigineering,Poster Presentations)
- Author
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Atsushi Yamaguchi, Noriyuki Ishii, Pi-Chao Wang, and Hiroaki Takagawa
- Subjects
Complement Receptor Type 1 ,Chinese hamster ovary cell ,Biology ,Bioinformatics ,Short Consensus Repeat ,Cell biology - Published
- 2007
- Full Text
- View/download PDF
38. Generation of a novel Cr2 gene allele by homologous recombination that abrogates production of Cr2 but is sufficient for expression of Cr1.
- Author
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Donius LR, Orlando CM, Weis JJ, and Weis JH
- Subjects
- Alleles, Alternative Splicing genetics, Animals, B-Lymphocytes immunology, B-Lymphocytes metabolism, Blotting, Western, Cell Membrane immunology, Cell Membrane metabolism, Dendritic Cells immunology, Dendritic Cells metabolism, Flow Cytometry, Gene Expression immunology, Homologous Recombination genetics, Immunohistochemistry, Mice, Mice, Knockout, Protein Isoforms genetics, Protein Isoforms immunology, Protein Isoforms metabolism, Receptors, Complement 3b genetics, Receptors, Complement 3b metabolism, Receptors, Complement 3d genetics, Receptors, Complement 3d metabolism, Reverse Transcriptase Polymerase Chain Reaction, Spleen cytology, Spleen immunology, Spleen metabolism, Alternative Splicing immunology, Homologous Recombination immunology, Receptors, Complement 3b immunology, Receptors, Complement 3d immunology
- Abstract
The enhancing effects of the complement system for humoral immunity have primarily focused upon the recognition of complement-bound foreign antigens by a co-receptor complex of the antigen-specific B cell receptor (BCR) and complement receptor 2 (Cr2). In vivo experiments using Cr2 gene deficient mice (which lack the expression of both the Cr1 and Cr2 proteins) do demonstrate depressed humoral responses to immunization but cannot be used to define specific contributions of the singular Cr1 or Cr2 proteins on B cell functions. To study the effect of a Cr2 deficiency in a Cr1 sufficient environment we created a mouse line in which the alternative splice site required for the expression of the Cr2 isoform was removed. This mouse line, Cr2KO, still expressed Cr1 on B cells but was deficient for the full length Cr2 protein. Surprisingly a new alternative splice within the Cr2 gene created a truncated product that encoded a novel protein termed iCr2 that was expressed on the surface of the cells. The Cr2KO mouse thus provides a new model system for the analysis of Cr1 and Cr2 functions in the immune response of the mouse., (Copyright © 2013 Elsevier GmbH. All rights reserved.)
- Published
- 2014
- Full Text
- View/download PDF
39. Standardisation of the factor H autoantibody assay.
- Author
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Watson R, Lindner S, Bordereau P, Hunze EM, Tak F, Ngo S, Zipfel PF, Skerka C, Dragon-Durey MA, and Marchbank KJ
- Subjects
- Atypical Hemolytic Uremic Syndrome, Autoantibodies blood, Hemolytic-Uremic Syndrome blood, Hemolytic-Uremic Syndrome diagnosis, Hemolytic-Uremic Syndrome immunology, Humans, Mass Screening methods, Mass Screening standards, Reference Standards, Reproducibility of Results, Sensitivity and Specificity, Autoantibodies immunology, Complement Factor H immunology, Enzyme-Linked Immunosorbent Assay methods, Enzyme-Linked Immunosorbent Assay standards
- Abstract
The screening of all atypical haemolytic uraemic syndrome (aHUS) patients for factor H autoantibodies is best practice. However, there is no consensus assay for the reporting of factor H autoantibody titres. In this study, three European complement laboratories with expertise in the field of autoantibody testing address this by systematically evaluating several ELISA methods used for the detection of factor H autoantibodies. All methods tested adequately detect high titre samples. However, this study recommends the Paris method for the detection and reporting of factor H autoantibodies to be used when setting up a factor H autoantibody screen. The importance of individual sample background subtraction in these ELISA tests was established. The use of a relative or arbitrary unit index with a common positive and negative serum allowed for consistent comparison of findings from different test centres. Therefore, it is recommended that a standard arbitrary unit scale based on a titration curve from a common positive anti-serum be adopted to allow future establishment of the relative importance of particular titres of factor H autoantibodies in aHUS. Systematic assay for the presence of factor H autoantibodies in patients using the Paris method will provide the longitudinal analysis needed to fully establish the importance of factor H autoantibodies in disease. This will feed into additional research to clarify whether additional factors have a bearing on the phenotype/outcome of autoimmune aHUS., (Copyright © 2013 Elsevier GmbH. All rights reserved.)
- Published
- 2014
- Full Text
- View/download PDF
40. A mental retardation gene, motopsin/prss12, modulates cell morphology by interaction with seizure-related gene 6.
- Author
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Mitsui S, Hidaka C, Furihata M, Osako Y, and Yuri K
- Subjects
- Animals, COS Cells, Cells, Cultured, Chlorocebus aethiops, Mice, Serine Endopeptidases metabolism, Intellectual Disability genetics, Nerve Tissue Proteins metabolism, Serine Endopeptidases genetics
- Abstract
A serine protease, motopsin (prss12), plays a significant role in cognitive function and the development of the brain, since the loss of motopsin function causes severe mental retardation in humans and enhances social behavior in mice. Motopsin is activity-dependently secreted from neuronal cells, is captured around the synaptic cleft, and cleaves a proteoglycan, agrin. The multi-domain structure of motopsin, consisting of a signal peptide, a proline-rich domain, a kringle domain, three scavenger receptor cysteine-rich domains, and a protease domain at the C-terminal, suggests the interaction with other molecules through these domains. To identify a protein interacting with motopsin, we performed yeast two-hybrid screening and found that seizure-related gene 6 (sez-6), a transmembrane protein on the plasma membrane of neuronal cells, bound to the proline-rich/kringle domain of motopsin. Pull-down and immunoprecipitation analyses indicated the interaction between these proteins. Immunocytochemical and immunohistochemical analyses suggested the co-localization of motopsin and sez-6 at neuronal cells in the developmental mouse brain and at motor neurons in the anterior horn of human spinal cords. Transient expression of motopsin in neuro2a cells increased the number and length of neurites as well as the level of neurite branching. Interestingly, co-expression of sez-6 with motopsin restored the effect of motopsin at the basal level, while sez-6 expression alone showed no effects on cell morphology. Our results suggest that the interaction of motopsin and sez-6 modulates the neuronal cell morphology., (Copyright © 2013 Elsevier Inc. All rights reserved.)
- Published
- 2013
- Full Text
- View/download PDF
41. Disulfide bonds are localized within the short consensus repeat units of complement regulatory proteins: C4b-binding protein
- Author
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Antony C. Willis, Kenneth B.M. Reid, and Jarmila Janatova
- Subjects
Models, Molecular ,Stereochemistry ,Molecular Sequence Data ,behavioral disciplines and activities ,Biochemistry ,Homology (biology) ,Chymotrypsin ,Amino Acid Sequence ,Disulfides ,Structural motif ,Short Consensus Repeat ,Chromatography, High Pressure Liquid ,Glycoproteins ,Complement Inactivator Proteins ,Binding Sites ,biology ,Protein molecules ,C4b-binding protein ,Disulfide bond ,Chromatography, Ion Exchange ,Peptide Fragments ,Fibronectin ,Membrane protein ,biology.protein ,Cystine ,Electrophoresis, Polyacrylamide Gel ,Carrier Proteins ,Peptide Hydrolases - Abstract
Several plasma and membrane proteins belong to a superfamily of structurally related proteins that contain internal homology of a variable number (2-30) of repeating units. Each SCR (short consensus repeat) unit is approximately 60 amino acid residues in length, with the positions of 1 Trp, 2 Pro, and 4 Cys residues being conserved. The aim of this study was to provide experimental evidence that each SCR may exist as an independent structural domain maintained by disulfide bonds. The well-characterized C4b-binding protein (C4BP) with eight SCR units in each of its seven identical chains was chosen for this study. Analysis of the disulfide-bonding pattern indicated that intrachain disulfide bonds may be localized within each SCR unit, with the first and third and the second and fourth half-cystines in each unit being linked. This pattern of disulfides may confer to C4BP (and to other structurally related proteins) a conformation which apparently allows the assembly of the SCR units (4-30) in a tandem fashion. Such an arrangement of the polypeptide chain(s) may explain, in part, the elongated shape of these protein molecules. The structural motif of the SCR units of C4BP is discussed in relation to those previously described for the type II domain of fibronectin and the kringle structure present in various proteins of the coagulation system.
- Published
- 1989
42. Cloning of cDNA Coding for the β Chain of Human Complement Component C4b-Binding Protein: Sequence Homology with the α-Chain
- Author
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Hillarp, Andreas and Dahlback, Bjorn
- Published
- 1990
43. Sites Within the Complement C3b/C4b Receptor Important for the Specificity of Ligand Binding
- Author
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Krych, Malgorzata, Hourcade, Dennis, and Atkinson, John P.
- Published
- 1991
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