1. Detecting Transient Trapping from a Single Trajectory: A Structural Approach
- Author
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Yann Lanoiselée, Jak Grimes, Zsombor Koszegi, and Davide Calebiro
- Subjects
single particle trajectory ,stochastic processes ,trapping ,confinement ,Science ,Astrophysics ,QB460-466 ,Physics ,QC1-999 - Abstract
In this article, we introduce a new method to detect transient trapping events within a single particle trajectory, thus allowing the explicit accounting of changes in the particle’s dynamics over time. Our method is based on new measures of a smoothed recurrence matrix. The newly introduced set of measures takes into account both the spatial and temporal structure of the trajectory. Therefore, it is adapted to study short-lived trapping domains that are not visited by multiple trajectories. Contrary to most existing methods, it does not rely on using a window, sliding along the trajectory, but rather investigates the trajectory as a whole. This method provides useful information to study intracellular and plasma membrane compartmentalisation. Additionally, this method is applied to single particle trajectory data of β2-adrenergic receptors, revealing that receptor stimulation results in increased trapping of receptors in defined domains, without changing the diffusion of free receptors.
- Published
- 2021
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