1. 辣椒 E2 基因家族的鉴定及分析.
- Author
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常雪瑞, 王田田, and 王静
- Abstract
【Objective】Ubiquitin-binding enzyme E2(UBC)is an important transit enzyme in the ubiquitin-proteasomal pathway that transfers ubiquitin to target proteins, which is involved in plant growth and development and many stresses. The E2 gene family members were identified from the whole genome of pepper, and the expression patterns of related genes were analyzed, which provided a theoretical basis for subsequent research.【Method】Based on the genome-wide information of pepper, the E2 family was identified by bioinformatics. The basic physio-chemical properties, subcellular localization, chromosomal localization, gene structure and phylogenetic analysis, cis-acting elements, abiotic stress response, tissue and organ expression patterns, and protein-protein interaction network of the family members were systematically analyzed.【Result】There were 48 members in the E2 gene family, which were unevenly distributed on 11 chromosomes, and its encoded proteins were mainly localized in the extracellular and nucleus. After comparative evolutionary analysis of pepper, tomato and Arabidopsis thaliana, they were divided into the Group I-Group XIII subfamily, which had similar conserved protein motifs and gene structures. A total of 26 proteins were found to interact. The cis-element analysis showed that the promoter region of CaUBC gene contained a large number of lightresponsive and hormone-responsive elements, and there were a variety of cis-acting elements related to growth, development and stress resistance in the upstream 2 000 bp region. CaUBC was involved in the stress, under different abiotic stresses and hormone treatments, they were divided into three categories, among which the third type of genes were highly expressed in high temperature environment; different expressions showed in tissues and organs, among which the expression of CaUBC38 in fruits changed significantly. RT-qPCR analysis showed that the relative expression was the highest at 50 d and the lowest at 10 d.【Conclusion】The 48 members of E2(CaUBC)gene family are systematically identified from the pepper genome. The expression characteristics of CaUBC family members during its growth, development, and abiotic stress responses are revealed. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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