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4. Intensive Vegetable Production Under Plastic Mulch: A Field Study on Soil Plastic and Pesticide Residues and Their Effects on the Soil Microbiome

Author

Beriot, Nicolas, primary, Zornoza, Raúl, additional, Lwanga, Esperanza Huerta, additional, Zomer, Paul, additional, van Schothorst, Benjamin, additional, Ozbolat, Onurcan, additional, Lloret, Eva, additional, Ortega Perez, Raul, additional, Miralles, Isabel, additional, Harkes, Paula, additional, van Steenbrugge, Joris J.M., additional, and Geissen, Violette, additional

Published
2022
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5. Comparative genomics among three cyst nematode species reveals distinct evolutionary histories among effector families and an irregular distribution of effector-associated promoter motifs

Author

van Steenbrugge, Joris J.M., primary, van den Elsen, Sven, additional, Holterman, Martijn, additional, Lozano-Torres, Jose L., additional, Putker, Vera, additional, Thorpe, Peter, additional, Goverse, Aska, additional, Sterken, Mark G., additional, Smant, Geert, additional, and Helder, Johannes, additional

Published
2021
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6. The genome and lifestage-specific transcriptomes of a plant-parasitic nematode and its host reveal susceptibility genes involved in trans-kingdom synthesis of vitamin B5

Author

Siddique, Shahid, primary, Radakovic, Zoran S., additional, Hiltl, Clarissa, additional, Pellegrin, Clement, additional, Baum, Thomas J., additional, Beasley, Helen, additional, Chitambo, Oliver, additional, Chopra, Divykriti, additional, Danchin, Etienne G.J., additional, Grenier, Eric, additional, Habash, Samer S., additional, Hasan, M. Shamim, additional, Helder, Johannes, additional, Hewezi, Tarek, additional, Holbein, Julia, additional, Holterman, Martijn, additional, Janakowski, Sławomir, additional, Koutsovoulos, Georgios D., additional, Kranse, Olaf P., additional, Lozano-Torres, Jose L., additional, Maier, Tom R., additional, Masonbrink, Rick E., additional, Mendy, Badou, additional, Riemer, Esther, additional, Sobczak, Mirosław, additional, Sonawala, Unnati, additional, Sterken, Mark G., additional, Thorpe, Peter, additional, van Steenbrugge, Joris J.M., additional, Zahid, Nageena, additional, Grundler, Florian, additional, and Eves-van den Akker, Sebastian, additional

Published
2021
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7. Additional file 1 of Comparative genomics of two inbred lines of the potato cyst nematode Globodera rostochiensis reveals disparate effector family-specific diversification patterns

Author

van Steenbrugge, Joris J.M., van den Elsen, Sven, Holterman, Martijn, Sterken, Mark G., Thorpe, Peter, Goverse, Aska, Smant, Geert, and Helder, Johannes

Abstract

Additional file 1: Figure S1 - BlobTools-based interrogation of genome assembly of Gr-Line 19 to verify for single-taxon origin of the original sequences. Panel A: Each Gr-Line19 scaffold is represented by a single filled circle. Each scaffold is positioned in the main panel based on its GC proportion (x-axis) and coverage by reads from PacBio sequences (y-axis). On the top right the colours of the individual blobs are linked to their taxonomic origin. At the bottom of the main Blobtool figure, the size of the circles is linked to scaffold size. Panel B: on the left the % of unmapped versus mapped Gr-Line19 PacBio reads are presented, and the right the taxonomic origin of the reads. Figure S2 - BlobTools-based interrogation of genome assembly of Gr-Line 22 to verify for single-taxon origin of the original sequences. Panel A: Each Gr-Line22 scaffold is represented by a single filled circle. Each scaffold is positioned in the main panel based on its GC proportion (x-axis) and coverage by reads from PacBio sequences (y-axis). On the top right the colours of the individual blobs are linked to their taxonomic origin. At the bottom of the main Blobtool figure, the size of the circles is linked to scaffold size. Panel B: on the left the % of unmapped versus mapped Gr-Line22 PacBio reads are presented, and the right the taxonomic origin of the reads. Figure S3 - Multiple sequence alignment of Gr-CLE-1 protein sequences to verify the conservation of the CLE domain in putative CLE-1 genes. Each gene is represented by a gene identifier. Two genes are included for Gr-Line19 (Gros19_g2219.t1 and Gros19_g2223.t1) and two for Gr-Line22 (Gros22_g4869.t1 and Gros22_g4874.t1). The CLE1 sequence identified in Heterodera glycines (Q9BN21) is included as an outgroup.

Published
2021
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11. Characterization of the habitat- and season-independent increase in fungal biomass induced by the invasive giant goldenrod and its impact on the fungivorous nematode community

Author

Harkes, Paula, primary, van Heumen, Lisa J.M., additional, van den Elsen, Sven J.J., additional, Mooijman, Paul J.W., additional, Quist, Casper W., additional, Vervoort, Mariëtte T. W., additional, Gort, Gerrit, additional, Holterman, Martijn H.M., additional, van Steenbrugge, Joris J.M., additional, and Helder, Johannes, additional

Published
2020
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