116 results on '"van der Heijden, M.G.A."'
Search Results
2. Global evaluation of commercial arbuscular mycorrhizal inoculants under greenhouse and field conditions
- Author
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Salomon, M.J., Demarmels, R., Watts-Williams, S.J., McLaughlin, M.J., Kafle, A., Ketelsen, C., Soupir, A., Bücking, H., Cavagnaro, T.R., and van der Heijden, M.G.A.
- Published
- 2022
- Full Text
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3. Short-term changes in soil biochemical properties as affected by subsidiary crop cultivation in four European pedo-climatic zones
- Author
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Papp, R., Marinari, S., Moscatelli, M.C., van der Heijden, M.G.A., Wittwer, R., Campiglia, E., Radicetti, E., Mancinelli, R., Fradgley, N., Pearce, B., Bergkvist, G., and Finckh, M.R.
- Published
- 2018
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4. Wheat performance with subclover living mulch in different agro-environmental conditions depends on crop management
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Radicetti, E., Baresel, J.P., El-Haddoury, E.J., Finckh, M.R., Mancinelli, R., Schmidt, J.H., Thami Alami, I., Udupa, S.M., van der Heijden, M.G.A., Wittwer, R., and Campiglia, E.
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- 2018
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5. Increasing the number of stressors reduces soil ecosystem services worldwide
- Author
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British Ecological Society, Ministerio de Ciencia e Innovación (España), Agencia Estatal de Investigación (España), European Commission, Junta de Andalucía, Alexander von Humboldt Foundation, Swiss National Science Foundation, Rillig, Matthias C. [0000-0003-3541-7853], van der Heijden, M.G.A. [0000-0001-7040-1924], Berdugo, Miguel [0000-0003-1053-8907], Liu, Yu-Rong [0000-0003-1112-4255], Riedo, Judith [0000-0002-6887-7664], Sanz-Lázaro, Carlos [0000-0002-4431-1762], Moreno-Jiménez, Eduardo [0000-0002-2125-1197], Romero, Ferran [0000-0002-2986-4166], Tedersoo, Leho [0000-0002-1635-1249], Delgado-Baquerizo, Manuel [0000-0002-6499-576X], Rillig, Matthias C., van der Heijden, Marcel G. A., Berdugo, Miguel, Liu, Yu-Rong, Riedo, Judith, Sanz-Lázaro, Carlos, Moreno-Jiménez, Eduardo, Romero, Ferran, Tedersoo, Leho, Delgado-Baquerizo, Manuel, British Ecological Society, Ministerio de Ciencia e Innovación (España), Agencia Estatal de Investigación (España), European Commission, Junta de Andalucía, Alexander von Humboldt Foundation, Swiss National Science Foundation, Rillig, Matthias C. [0000-0003-3541-7853], van der Heijden, M.G.A. [0000-0001-7040-1924], Berdugo, Miguel [0000-0003-1053-8907], Liu, Yu-Rong [0000-0003-1112-4255], Riedo, Judith [0000-0002-6887-7664], Sanz-Lázaro, Carlos [0000-0002-4431-1762], Moreno-Jiménez, Eduardo [0000-0002-2125-1197], Romero, Ferran [0000-0002-2986-4166], Tedersoo, Leho [0000-0002-1635-1249], Delgado-Baquerizo, Manuel [0000-0002-6499-576X], Rillig, Matthias C., van der Heijden, Marcel G. A., Berdugo, Miguel, Liu, Yu-Rong, Riedo, Judith, Sanz-Lázaro, Carlos, Moreno-Jiménez, Eduardo, Romero, Ferran, Tedersoo, Leho, and Delgado-Baquerizo, Manuel
- Abstract
Increasing the number of environmental stressors could decrease ecosystem functioning in soils. Yet this relationship has not been globally assessed outside laboratory experiments. Here, using two independent global standardized field surveys, and a range of natural and human factors, we test the relationship between the number of environmental stressors exceeding different critical thresholds and the maintenance of multiple ecosystem services across biomes. Our analysis shows that having multiple stressors, from medium levels (>50%), negatively and significantly correlates with impacts on ecosystem services and that having multiple stressors crossing a high-level critical threshold (over 75% of maximum observed levels) reduces soil biodiversity and functioning globally. The number of environmental stressors exceeding the >75% threshold was consistently seen as an important predictor of multiple ecosystem services, therefore improving prediction of ecosystem functioning. Our findings highlight the need to reduce the dimensionality of the human footprint on ecosystems to conserve biodiversity and function.
- Published
- 2023
6. Frontiers in soil ecology—Insights from the World Biodiversity Forum 2022
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German Research Foundation, Saxon State Ministry of Science, Culture and Tourism, European Commission, Swedish Research Council for Sustainable Development, German Federal Environmental Foundation, Eisenhauer, Nico [0000-0002-0371-6720], Bender, S. Franz [0000-0003-0895-2228], Calderón‐Sanou, Irene [0000-0003-4608-1187], Vries, Franciska T. de [0000-0002-6822-8883], Lembrechts. Jonas J. [0000-0002-1933-0750], Thuiller, Wilfried [0000-0002-5388-5274], Wall, Diana H. [0000-0002-9466-5235], Zeiss. Romy [0000-0001-8862-9185], Beugnon, Rémy [0000-0003-2457-5688], Burton, Victoria [0000-0003-0122-3292], Crowther, Thomas Ward [0000-0001-5674-8913], Delgado-Baquerizo, Manuel [0000-0002-6499-576X], Geisen, Stefan [0000-0003-0734-727X], Kardol, Paul [0000-0001-7065-3435], Krashevska, Valentyna [0000-0002-9765-5833], Patoine, Guillaume [0000-0002-3748-6644], Siebert, Julia [0000-0003-0189-7377], Soudzilovskaia, Nadejda A. [0000-0002-9584-2109], Steinwandter, Michael [0000-0001-8545-6047], Sünnemann, Marie [0000-0001-5385-258X], van der Heijden, M.G.A. [0000-0001-7040-1924], Sun, Xin [0000-0002-3988-7847], Guerra, Carlos A. [0000-0003-4917-2105], Potapov, Anton [0000-0002-4456-1710], Eisenhauer, Nico, Bender, S. Franz, Calderón‐Sanou, Irene, Vries, Franciska T. de, Lembrechts. Jonas J., Thuiller, Wilfried, Wall, Diana H., Zeiss. Romy, Bahram, Mohammad, Beugnon, Rémy, Burton, Victoria, Crowther, Thomas Ward, Delgado-Baquerizo, Manuel, Geisen, Stefan, Kardol, Paul, Krashevska, Valentyna, Martínez‐Muñoz, Carlos A., Patoine, Guillaume, Siebert, Julia, Soudzilovskaia, Nadejda A., Steinwandter, Michael, Sünnemann, Marie, Sun, Xin, van der Heijden, Marcel G. A., Guerra, Carlos A., Potapov, Anton, German Research Foundation, Saxon State Ministry of Science, Culture and Tourism, European Commission, Swedish Research Council for Sustainable Development, German Federal Environmental Foundation, Eisenhauer, Nico [0000-0002-0371-6720], Bender, S. Franz [0000-0003-0895-2228], Calderón‐Sanou, Irene [0000-0003-4608-1187], Vries, Franciska T. de [0000-0002-6822-8883], Lembrechts. Jonas J. [0000-0002-1933-0750], Thuiller, Wilfried [0000-0002-5388-5274], Wall, Diana H. [0000-0002-9466-5235], Zeiss. Romy [0000-0001-8862-9185], Beugnon, Rémy [0000-0003-2457-5688], Burton, Victoria [0000-0003-0122-3292], Crowther, Thomas Ward [0000-0001-5674-8913], Delgado-Baquerizo, Manuel [0000-0002-6499-576X], Geisen, Stefan [0000-0003-0734-727X], Kardol, Paul [0000-0001-7065-3435], Krashevska, Valentyna [0000-0002-9765-5833], Patoine, Guillaume [0000-0002-3748-6644], Siebert, Julia [0000-0003-0189-7377], Soudzilovskaia, Nadejda A. [0000-0002-9584-2109], Steinwandter, Michael [0000-0001-8545-6047], Sünnemann, Marie [0000-0001-5385-258X], van der Heijden, M.G.A. [0000-0001-7040-1924], Sun, Xin [0000-0002-3988-7847], Guerra, Carlos A. [0000-0003-4917-2105], Potapov, Anton [0000-0002-4456-1710], Eisenhauer, Nico, Bender, S. Franz, Calderón‐Sanou, Irene, Vries, Franciska T. de, Lembrechts. Jonas J., Thuiller, Wilfried, Wall, Diana H., Zeiss. Romy, Bahram, Mohammad, Beugnon, Rémy, Burton, Victoria, Crowther, Thomas Ward, Delgado-Baquerizo, Manuel, Geisen, Stefan, Kardol, Paul, Krashevska, Valentyna, Martínez‐Muñoz, Carlos A., Patoine, Guillaume, Siebert, Julia, Soudzilovskaia, Nadejda A., Steinwandter, Michael, Sünnemann, Marie, Sun, Xin, van der Heijden, Marcel G. A., Guerra, Carlos A., and Potapov, Anton
- Abstract
Global change is affecting soil biodiversity and functioning across all terrestrial ecosystems. Still, much is unknown about how soil biodiversity and function will change in the future in response to simultaneous alterations in climate and land use, as well as other environmental drivers. It is crucial to understand the direct, indirect and interactive effects of global change drivers on soil communities and ecosystems across environmental contexts, not only today but also in the near future. This is particularly relevant for international efforts to tackle climate change like the Paris Agreement, and considering the failure to achieve the 2020 biodiversity targets, especially the target of halting soil degradation. Here, we outline the main frontiers related to soil ecology that were presented and discussed at the thematic sessions of the World Biodiversity Forum 2022 in Davos, Switzerland. We highlight multiple frontiers of knowledge associated with data integration, causal inference, soil biodiversity and function scenarios, critical soil biodiversity facets, underrepresented drivers, global collaboration, knowledge application and transdisciplinarity, as well as policy and public communication. These identified research priorities are not only of immediate interest to the scientific community but may also be considered in research priority programmes and calls for funding.
- Published
- 2022
7. Assessing the environmental impacts of cropping systems and cover crops: Life cycle assessment of FAST, a long-term arable farming field experiment
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Prechsl, U E, Wittwer, R, van der Heijden, M.G.A., Luscher, G, Jeanneret, P, Nemecek, T, Sub Plant-Microbe Interactions, and Plant Microbe Interactions
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Organic farming ,Intensive farming ,Agroforestry ,LCA ,Ecological farming ,04 agricultural and veterinary sciences ,010501 environmental sciences ,Crop rotation ,Carbon footprint ,01 natural sciences ,Environmental impact ,Minimum tillage ,Tillage ,040103 agronomy & agriculture ,Cover crop ,0401 agriculture, forestry, and fisheries ,Environmental science ,Animal Science and Zoology ,Strip-till ,Cropping system ,Conservation tillage ,Agronomy and Crop Science ,0105 earth and related environmental sciences - Abstract
To reduce environmental impacts of cropping systems, various management strategies are being discussed. Long-term field experiments are particularly suitable to directly compare different management strategies and to perform a comprehensive impact assessment. To identify the key drivers of several environmental impacts, we analysed a six year crop rotation of the Farming System and Tillage Experiment (FAST) by means of the Swiss Agriculture Life Cycle Assessment method (SALCA). The following factors of the FAST experiment were considered: (1) cropping system (stockless conventional farming vs. organic farming), (2) tillage (intensive tillage vs. no or reduced tillage), and (3) cover crop. We analysed the effects of these three factors on the global warming potential (GWP), aquatic and terrestrial eutrophication, and aquatic ecotoxicity for two functional units, i.e. per product and per area. Potential impacts on biodiversity were also analysed. Our analysis revealed that there is not one superior cropping system, as the ranking depended on the environmental impact selected and on the functional unit. The cropping system had the strongest effect on most of the environmental impacts, and this was mainly driven by differences in N-fertilisation (amount and form) and yield. The global warming potential, for instance, was highest in both conventional systems compared to the organic systems, when emissions were calculated per area. In contrast, calculating emissions per product, there were no statistical differences between all four systems. On the other hand, due to higher nitrogen emissions related to the application of cattle slurry in the organic system, the terrestrial eutrophication of the organic systems was higher than the conventional systems, independent of the functional unit. The effects of tillage were much lower compared to the cropping system. No tillage, but not necessarily reduced tillage, and the cultivation of cover crops had the potential to reduce aquatic eutrophication. As N-fertilisation dominated many impact categories, we suggest improving the N-efficiency as a crucial leverage point to improve the environmental performance of arable farming systems.
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- 2017
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8. Drought modulates interactions between arbuscular mycorrhizal fungal diversity and barley genotype diversity
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Sendek, A., Karakoç, Canan, Wagg, Cameron, Domínguez Begines, J., Martucci do Couto, G., van der Heijden, M.G.A., Naz, Ali, Lochner, Alfred, Chatzinotas, Antonis, Klotz, Stephan, Gómez Aparicio, Lorena, German Centre for Integrative Biodiversity Research, Leipzig University, German Research Foundation, Sendek, A. [0000-0001-5337-9307], Karakoç, Canan [0000-0002-3921-3535], Wagg, Cameron [0000-0002-9738-6901], Domínguez Begines, J. [0000-0001-9406-1813], Naz, Ali [0000-0002-0382-2128], Chatzinotas, Antonis [0000-0002-0387-9802], Gómez Aparicio, Lorena [0000-0001-5122-3579], Eisenhauer, Nico [0000-0002-0371-6720], Sendek, A., Karakoç, Canan, Wagg, Cameron, Domínguez Begines, J., Naz, Ali, Chatzinotas, Antonis, Gómez Aparicio, Lorena, and Eisenhauer, Nico
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Microcosm ,Genotype ,Barley ,Harvest ,Yield Soil ,Climate change ,Biomass ,Plant ,Drought tolerance ,Mycorrhiza ,Nonhuman ,Article - Abstract
15 páginas.- 4 figuras.- 3 tablas.- 165 referencias.- Supplementary information accompanies this paper at https://doi.org/10.1038/s41598-019-45702-1, Droughts associated with climate change alter ecosystem functions, especially in systems characterized by low biodiversity, such as agricultural fields. Management strategies aimed at buffering climate change effects include the enhancement of intraspecific crop diversity as well as the diversity of beneficial interactions with soil biota, such as arbuscular mycorrhizal fungi (AMF). However, little is known about reciprocal relations of crop and AMF diversity under drought conditions. To explore the interactive effects of plant genotype richness and AMF richness on plant yield under ambient and drought conditions, we established fully crossed diversity gradients in experimental microcosms. We expected highest crop yield and drought tolerance at both high barley and AMF diversity. While barley richness and AMF richness altered the performance of both barley and AMF, they did not mitigate detrimental drought effects on the plant and AMF. Root biomass increased with mycorrhiza colonization rate at high AMF richness and low barley richness. AMF performance increased under higher richness of both barley and AMF. Our findings indicate that antagonistic interactions between barley and AMF may occur under drought conditions, particularly so at higher AMF richness. These results suggest that unexpected alterations of plant-soil biotic interactions could occur under climate change. © 2019, The Author(s)., This project was supported by the German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig, funded by the German Research Foundation (DFG; FZT 118). We acknowledge support from the German ResearchFoundation (DFG) and Leipzig University within the program of Open Access Publishing.
- Published
- 2019
9. Does conversion to reduced tillage really increase soil organic carbon stocks in organic arable farming?
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Steffens, M., Cupterus, F., Don, A., Gattinger, A., Gruber, S., Haagsma, W., Hegewald, F., Peigné, J., Chiodelli Palazzoli, M., Schulz, F., van der Heijden, M.G.A., Vincent-Caboud, L., Wiesmeier, M., Wittwer, R., Zikeli, S., and Krauss, M.
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Soil ,"Organics" in general ,Soil tillage - Abstract
Aggravation of weather extremes increases awareness of climate change consequences. Mitigation options are in demand that aim to reduce the atmospheric concentration of greenhouse gases. Amongst others, the conversion from ploughing to reduced tillage is argued to increase soil organic carbon (SOC) stocks as an accumulation of SOC in topsoil layers is commonly reported. Yet, reviews and meta-analyses describe various results from significant increases to just a redistribution of SOC in the soil profile. Reasons can be found in different sampling depths, SOC and bulk density measurement procedure, and stock calculation (equivalent soil mass vs. equal sampling depth). Furthermore, few studies evaluated the impact of organic farming systems. In nine long-term experiments on tillage systems in temperate Europe (France, Germany, Netherlands, and Switzerland), a common soil sampling campaign took place in spring and autumn 2017, and spring 2018. All trials represent common mixed organic farming systems of the respective region and contain plots with conventional and reduced tillage practices. While climatic conditions are similar, soil types vary from sandy to clayey soils. We took three undisturbed soil cores with driving hammer probes (8 cm in diameter) in each plot (minimum 3 plots per treatment) to a maximum depth of 100 cm and divided the cores in the increments 0-30, 30-50, 50-70, and 70-100 cm. The topsoil (0-30 cm) was further divided into the different tillage depths of the respective trial. We determined bulk density and organic carbon concentration as main variables and soil texture and pH as co-variates for each sample and collected C-inputs for each plot in all trails on a yearly basis. Multivariate statistics will enable the comprehensive evaluation of tillage effects on SOC stocks up to a depth of 100 cm in organic long-term trials. Texture, trial age, and the co-variate C-input will be decisive for the development of SOC stocks and enable the evaluation of carbon sequestration potentials of agricultural soils through improved tillage practices.
- Published
- 2019
10. Drought modulates interactions between arbuscular mycorrhizal fungal diversity and barley genotype diversity
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Sendek, Agnieszka, Karakoç, Canan, Wagg, C., Domínguez-Begines, J., Martucci do Couto, G., van der Heijden, M.G.A., Naz, A.A., Lochner, A., Chatzinotas, Antonis, Klotz, Stefan, Gómez-Aparicio, L., Eisenhauer, N., Sendek, Agnieszka, Karakoç, Canan, Wagg, C., Domínguez-Begines, J., Martucci do Couto, G., van der Heijden, M.G.A., Naz, A.A., Lochner, A., Chatzinotas, Antonis, Klotz, Stefan, Gómez-Aparicio, L., and Eisenhauer, N.
- Abstract
Droughts associated with climate change alter ecosystem functions, especially in systems characterized by low biodiversity, such as agricultural fields. Management strategies aimed at buffering climate change effects include the enhancement of intraspecific crop diversity as well as the diversity of beneficial interactions with soil biota, such as arbuscular mycorrhizal fungi (AMF). However, little is known about reciprocal relations of crop and AMF diversity under drought conditions. To explore the interactive effects of plant genotype richness and AMF richness on plant yield under ambient and drought conditions, we established fully crossed diversity gradients in experimental microcosms. We expected highest crop yield and drought tolerance at both high barley and AMF diversity. While barley richness and AMF richness altered the performance of both barley and AMF, they did not mitigate detrimental drought effects on the plant and AMF. Root biomass increased with mycorrhiza colonization rate at high AMF richness and low barley richness. AMF performance increased under higher richness of both barley and AMF. Our findings indicate that antagonistic interactions between barley and AMF may occur under drought conditions, particularly so at higher AMF richness. These results suggest that unexpected alterations of plant-soil biotic interactions could occur under climate change.
- Published
- 2019
11. Fungal-bacterial diversity and microbiome complexity predict ecosystem functioning
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Wagg, Cameron, Schlaeppi, Klaus, Banerjee, S., Kuramae, Eiko, Van der Heijden, M.G.A., Wagg, Cameron, Schlaeppi, Klaus, Banerjee, S., Kuramae, Eiko, and Van der Heijden, M.G.A.
- Published
- 2019
12. Soil biota enhance agricultural sustainability by improving crop yield, nutrient uptake and reducing nitrogen leaching losses
- Author
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Bender, S.F., van der Heijden, M.G.A., Sub Plant-Microbe Interactions, Dep Biologie, and Plant Microbe Interactions
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0106 biological sciences ,Soil biology ,arbuscular mycorrhizal fungi ,maize ,complex mixtures ,01 natural sciences ,crop rotation ,Nutrient ,wheat ,agro-ecosystem ,Leaching (agriculture) ,lysimeters ,2. Zero hunger ,nutrient-use efficiency ,Ecology ,Crop yield ,fungi ,nutrient losses ,04 agricultural and veterinary sciences ,15. Life on land ,Crop rotation ,6. Clean water ,Tillage ,Agronomy ,13. Climate action ,Lysimeter ,tillage ,040103 agronomy & agriculture ,Organic farming ,0401 agriculture, forestry, and fisheries ,Environmental science ,phosphorous ,010606 plant biology & botany - Abstract
Efficient resource use is a key factor for sustainable production and a necessity for meeting future global food demands. However, the factors that control resource use efficiency in agro-ecosystems are only partly understood. We investigated the influence of soil biota on nutrient leaching, nutrient-use efficiency and plant performance in outdoor, open-top lysimeters comprising a volume of 230L. The lysimeters were filled with sterilized soil in two horizons and inoculated with a reduced soil-life inoculum (soil biota 11m, microbially dominated) and an enriched soil-life inoculum [soil organisms 2mm, also containing arbuscular mycorrhizal fungi (AMF)]. A crop rotation was planted, and nutrient leaching losses, plant biomass and nutrient contents were assessed over a period of almost 2years. In the first year of the experiment, enriched soil life increased crop yield (+22%), N uptake (+29%) and P uptake (+110%) of maize and strongly reduced leaching losses of N (-51%, corresponding to a reduction of 76kg N ha(-1)). In the second year, wheat biomass (+17%) and P contents (+80%) were significantly increased by enriched soil life, but the differences were lower than in the first year. Enriched soil life also increased P mobilization from soil (+112%) and significantly reduced relative P leaching losses (-25%), defined as g P leached per kg P plant uptake, as well as relative N leaching losses (-36%), defined as kg N leached per kg N plant uptake, demonstrating that nutrient-use efficiency was increased in the enriched soil-life treatment. Synthesis and applications. Soil biota are a key factor determining resource efficiency in agriculture. The results suggest that applying farming practices, which favour a rich and abundant soil life (e.g. reduced tillage, organic farming, crop rotation), can reduce environmental impacts, enhance crop yield and result in a more sustainable agricultural system. However, this needs to be confirmed in field situations. Enhanced nutrient-use efficiency obtained through farming practices which exert positive effects on soil biota could result in reduced amounts of fertilisers needed for agricultural production and reduced nutrient losses to the environment, providing benefits of such practices beyond positive effects on biodiversity. Soil biota are a key factor determining resource efficiency in agriculture. The results suggest that applying farming practices, which favour a rich and abundant soil life (e.g. reduced tillage, organic farming, crop rotation), can reduce environmental impacts, enhance crop yield and result in a more sustainable agricultural system. However, this needs to be confirmed in field situations. Enhanced nutrient-use efficiency obtained through farming practices which exert positive effects on soil biota could result in reduced amounts of fertilisers needed for agricultural production and reduced nutrient losses to the environment, providing benefits of such practices beyond positive effects on biodiversity.
- Published
- 2014
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13. Community assembly, species richness and nestedness of arbuscular myucorrhizal fungi in agricultural soils
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Verbruggen, E., van der Heijden, M.G.A., Weedon, J.T., Kowalchuk, G.A., Roling, W.F.M., Animal Ecology, Systems Ecology, Molecular Cell Physiology, AIMMS, and Amsterdam Global Change Institute
- Abstract
Understanding how communities assemble is a central goal of ecology. This is particularly relevant for communities of arbuscular mycorrhizal fungi (AMF), because the community composition of these beneficial plant symbionts influences important ecosystem processes. Moreover, AMF may be used as sensitive indicators of ecological soil quality if they respond to environmental variation in a predictable way. Here, we use a molecular profiling technique (T-RFLP of 25S rRNA gene fragments) to test which factors determine AM fungal community composition in 40 agricultural soils in the Netherlands. In particular, we test whether species richness, dominance structure and community nestedness are influenced by management type (in pairs of organically and conventionally farmed fields), and we examine the contribution of crop species (maize vs. potato), soil type (sand vs. clay-textured soils) and habitat (plant root vs. bulk soil) on AMF community characteristics. AMF richness varied from 1 to 11 taxa per field. Communities from species-poor fields were found to be subsets of those in richer fields, indicating nestedness and a progressive 'loss' from the species pool. AMF taxa richness and occurrence in soil and plant roots were highly correlated, and richness was related to management intensity (phosphate availability and grass-cropping history together explained 32% and 50% of richness in roots and soils). Soil type together with soil chemical parameters explained only 17% of variance in AMF community structure. We synthesize these results by discussing the potential contribution of a 'bottleneck effect' on AMF communities through increased stochastic effects under environmental stress. © 2012 Blackwell Publishing Ltd.
- Published
- 2012
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14. Root surface as a frontier for plant microbiome research
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van der Heijden, M.G.A., Schlaeppi, Klaus, Sub Plant-Microbe Interactions, Dep Biologie, and Plant Microbe Interactions
- Subjects
General - Published
- 2015
15. Community profiling of Fusarium in combination with other plant-associated fungi in different crop species using SMRT sequencing
- Author
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Walder, F, Schlaeppi, K, Wittwer, R, Held, A Y, Vogelgsang, S, van der Heijden, M.G.A., Walder, F, Schlaeppi, K, Wittwer, R, Held, A Y, Vogelgsang, S, and van der Heijden, M.G.A.
- Abstract
Fusarium head blight, caused by fungi from the genus Fusarium, is one of the most harmful cereal diseases, resulting not only in severe yield losses but also in mycotoxin contaminated and health-threatening grains. Fusarium head blight is caused by a diverse set of species that have different host ranges, mycotoxin profiles and responses to agricultural practices. Thus, understanding the composition of Fusarium communities in the field is crucial for estimating their impact and also for the development of effective control measures. Up to now, most molecular tools that monitor Fusarium communities on plants are limited to certain species and do not distinguish other plant associated fungi. To close these gaps, we developed a sequencing-based community profiling methodology for crop-associated fungi with a focus on the genus Fusarium. By analyzing a 1600 bp long amplicon spanning the highly variable segments ITS and D1-D3 of the ribosomal operon by PacBio SMRT sequencing, we were able to robustly quantify Fusarium down to species level through clustering against reference sequences. The newly developed methodology was successfully validated in mock communities and provided similar results as the culture-based assessment of Fusarium communities by seed health tests in grain samples from different crop species. Finally, we exemplified the newly developed methodology in a field experiment with a wheat-maize crop sequence under different cover crop and tillage regimes. We analyzed wheat straw residues, cover crop shoots and maize grains and we could reveal that the cover crop hairy vetch (Vicia villosa) acts as a potent alternative host for Fusarium (OTU F.ave/tri) showing an eightfold higher relative abundance compared with other cover crop treatments. Moreover, as the newly developed methodology also allows to trace other crop-associated fungi, we found that vetch and green fallow hosted further fungal plant pathogens including Zymoseptoria tritici. Thus, besides their
- Published
- 2017
16. Community profiling of Fusarium in combination with other plant-associated fungi in different crop species using SMRT sequencing
- Author
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Sub Plant-Microbe Interactions, Plant Microbe Interactions, Walder, F, Schlaeppi, K, Wittwer, R, Held, A Y, Vogelgsang, S, van der Heijden, M.G.A., Sub Plant-Microbe Interactions, Plant Microbe Interactions, Walder, F, Schlaeppi, K, Wittwer, R, Held, A Y, Vogelgsang, S, and van der Heijden, M.G.A.
- Published
- 2017
17. Assessing the environmental impacts of cropping systems and cover crops: Life cycle assessment of FAST, a long-term arable farming field experiment
- Author
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Sub Plant-Microbe Interactions, Plant Microbe Interactions, Prechsl, U E, Wittwer, R, van der Heijden, M.G.A., Luscher, G, Jeanneret, P, Nemecek, T, Sub Plant-Microbe Interactions, Plant Microbe Interactions, Prechsl, U E, Wittwer, R, van der Heijden, M.G.A., Luscher, G, Jeanneret, P, and Nemecek, T
- Published
- 2017
18. Where less may be more: How the rare biosphere pulls ecosystems strings
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Jousset, Alexandre, Bienhold, C., Chatzinotas, A., Gallien, L., Gobet, A., Kurm, Viola, Kuesel, K., Rillig, M., Rivett, D., Salles, Joanna, Van der Heijden, M.G.A., Youssef, N., Zhang, Xiaowei, Wei, Z., Hol, W.H.G., Jousset, Alexandre, Bienhold, C., Chatzinotas, A., Gallien, L., Gobet, A., Kurm, Viola, Kuesel, K., Rillig, M., Rivett, D., Salles, Joanna, Van der Heijden, M.G.A., Youssef, N., Zhang, Xiaowei, Wei, Z., and Hol, W.H.G.
- Abstract
Rare species are increasingly recognized as crucial, yet vulnerable components of Earth’s ecosystems. This is also true for microbial communities, which are typically composed of a high number of relatively rare species. Recent studies have demonstrated that rare species can have an over-proportional role in biogeochemical cycles and may be a hidden driver of microbiome function. In this review, we provide an ecological overview of the rare microbial biosphere, including causes of rarity and the impacts of rare species on ecosystem functioning. We discuss how rare species can have a preponderant role for local biodiversity and species turnover with rarity potentially bound to phylogenetically conserved features. Rare microbes may therefore be overlooked keystone species regulating the functioning of host-associated, terrestrial and aquatic environments. We conclude this review with recommendations to guide scientists interested in investigating this rapidly emerging research area.
- Published
- 2017
19. Where less may be more: how the rare biosphere pulls ecosystems strings
- Author
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Jousset, A., Bienhold, C., Chatzinotas, Antonis, Gallien, L., Gobet, A., Kurm, V., Küsel, K., Rillig, M.C., Rivett, D.W., Salles, J.F., van der Heijden, M.G.A., Youssef, N.H., Zhang, X., Wei, Z., Hol, W.H.G., Jousset, A., Bienhold, C., Chatzinotas, Antonis, Gallien, L., Gobet, A., Kurm, V., Küsel, K., Rillig, M.C., Rivett, D.W., Salles, J.F., van der Heijden, M.G.A., Youssef, N.H., Zhang, X., Wei, Z., and Hol, W.H.G.
- Abstract
Rare species are increasingly recognized as crucial, yet vulnerable components of Earth’s ecosystems. This is also true for microbial communities, which are typically composed of a high number of relatively rare species. Recent studies have demonstrated that rare species can have an over-proportional role in biogeochemical cycles and may be a hidden driver of microbiome function. In this review, we provide an ecological overview of the rare microbial biosphere, including causes of rarity and the impacts of rare species on ecosystem functioning. We discuss how rare species can have a preponderant role for local biodiversity and species turnover with rarity potentially bound to phylogenetically conserved features. Rare microbes may therefore be overlooked keystone species regulating the functioning of host-associated, terrestrial and aquatic environments. We conclude this review with recommendations to guide scientists interested in investigating this rapidly emerging research area.
- Published
- 2017
20. Soil biota enhance agricultural sustainability by improving crop yield, nutrient uptake and reducing nitrogen leaching losses
- Author
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Bender, S.F., van der Heijden, M.G.A., Sub Plant-Microbe Interactions, Dep Biologie, and Plant Microbe Interactions
- Subjects
crop rotation ,nutrient-use efficiency ,wheat ,tillage ,arbuscular mycorrhizal fungi ,agro-ecosystem ,nutrient losses ,lysimeters ,maize ,phosphorous - Abstract
Efficient resource use is a key factor for sustainable production and a necessity for meeting future global food demands. However, the factors that control resource use efficiency in agro-ecosystems are only partly understood. We investigated the influence of soil biota on nutrient leaching, nutrient-use efficiency and plant performance in outdoor, open-top lysimeters comprising a volume of 230L. The lysimeters were filled with sterilized soil in two horizons and inoculated with a reduced soil-life inoculum (soil biota 11m, microbially dominated) and an enriched soil-life inoculum [soil organisms 2mm, also containing arbuscular mycorrhizal fungi (AMF)]. A crop rotation was planted, and nutrient leaching losses, plant biomass and nutrient contents were assessed over a period of almost 2years. In the first year of the experiment, enriched soil life increased crop yield (+22%), N uptake (+29%) and P uptake (+110%) of maize and strongly reduced leaching losses of N (-51%, corresponding to a reduction of 76kg N ha(-1)). In the second year, wheat biomass (+17%) and P contents (+80%) were significantly increased by enriched soil life, but the differences were lower than in the first year. Enriched soil life also increased P mobilization from soil (+112%) and significantly reduced relative P leaching losses (-25%), defined as g P leached per kg P plant uptake, as well as relative N leaching losses (-36%), defined as kg N leached per kg N plant uptake, demonstrating that nutrient-use efficiency was increased in the enriched soil-life treatment. Synthesis and applications. Soil biota are a key factor determining resource efficiency in agriculture. The results suggest that applying farming practices, which favour a rich and abundant soil life (e.g. reduced tillage, organic farming, crop rotation), can reduce environmental impacts, enhance crop yield and result in a more sustainable agricultural system. However, this needs to be confirmed in field situations. Enhanced nutrient-use efficiency obtained through farming practices which exert positive effects on soil biota could result in reduced amounts of fertilisers needed for agricultural production and reduced nutrient losses to the environment, providing benefits of such practices beyond positive effects on biodiversity. Soil biota are a key factor determining resource efficiency in agriculture. The results suggest that applying farming practices, which favour a rich and abundant soil life (e.g. reduced tillage, organic farming, crop rotation), can reduce environmental impacts, enhance crop yield and result in a more sustainable agricultural system. However, this needs to be confirmed in field situations. Enhanced nutrient-use efficiency obtained through farming practices which exert positive effects on soil biota could result in reduced amounts of fertilisers needed for agricultural production and reduced nutrient losses to the environment, providing benefits of such practices beyond positive effects on biodiversity.
- Published
- 2015
21. Mycorrhizal effects on nutrient cycling, nutrient leaching and N2O production in experimental grassland
- Author
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Bender, S.F., Conen, F., van der Heijden, M.G.A., Sub Plant-Microbe Interactions, Dep Biologie, and Plant Microbe Interactions
- Subjects
Nitrous oxide ,Nitrogen ,Phosphorous ,Arbuscular mycorrhizal fungi ,Unreactive P ,Agriculture ,Organic N ,Resource efficiency - Abstract
Arbuscular mycorrhizal fungi (AMF) can enhance plant nutrition and growth. However, their contribution to nutrient cycling in ecosystems is still poorly understood. Using experimental grassland microcosms filled with two different soil types (pasture and heath soil) and fertilized with different N forms (NO3- or NH4+), we tested the AMF contribution to N and P cycling including measurements of organic and inorganic leaching losses and N2O fluxes. We hypothesized that AMF enhance the sustainability of plant-soil systems by reducing nutrient losses and enhancing plant nutrient uptake. AMF reduced reactive and unreactive P leaching by 31%, enhanced plant P contents by 15% and increased P mobilization from soil by 18%. AMF reduced N2O fluxes and NH4+ leaching in both soils. Leaching of dissolved organic N was reduced by 24% in the heath soil only. Plant N contents were increased by 13% in the pasture soil but not affected in the heath soil. The microbial biomass N content was higher with AMF. This is the first comprehensive assessment of the influence of AMF on N and P cycling, including effects on inorganic and organic nutrient leaching losses and N2O emissions in a single study. We conclude that AMF can promote sustainable nutrient cycling but the effects on N cycling are context dependent.
- Published
- 2015
22. Mycorrhizal Ecology
- Author
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van der Heijden, M.G.A., Sanders, I.R., van der Heijden, M.G.A., and Sanders, I.R.
- Published
- 2002
23. Arbuscular mycorrhizal fungi as a determinant of plant diversity: in search for underlying mechanisms and general principles
- Author
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van der Heijden, M.G.A., van der Heijden, M.G.A., and Sanders, I.R.
- Published
- 2002
24. Arbuscular mycorrhizal fungi reduce growth and infect roots of the non-host plant Arabidopsis thaliana
- Author
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Veiga, R.S.L., Faccio, A., Genre, A., Pieterse, C.M.J., Bonfante, P., van der Heijden, M.G.A., Plant Microbe Interactions, and Sub Plant-Microbe Interactions
- Subjects
growth reduction ,arbuscular mycorrhizal (AM) incompatibility ,plant–microbe interactions ,root infection ,non-mycorrhizal plants ,International ,fungi ,Taverne ,food and beverages ,Rhizophagus irregularis ,model system ,AM network - Abstract
The arbuscular mycorrhizal (AM) symbiosis is widespread throughout the plant kingdom and important for plant nutrition and ecosystem functioning. Nonetheless, most terrestrial ecosystems also contain a considerable number of nonmycorrhizal plants. The interaction of such non-host plants with AM fungi (AMF) is still poorly understood. Here, in three complementary experiments, we investigated whether the non-mycorrhizal plant Arabidopsis thaliana, the model organism for plant molecular biology and genetics, interacts with AMF. We grew A. thaliana alone or together with a mycorrhizal host species (either Trifolium pratense or Lolium multiflorum) in the presence or absence of the AMF Rhizophagus irregularis. Plants were grown in a dualcompartment system with a hyphal mesh separating roots of A. thaliana from roots of the host species, avoiding direct root competition. The host plants in the system ensured the presence of an active AM fungal network. AM fungal networks caused growth depressions in A. thaliana of more than 50% which were not observed in the absence of host plants. Microscopy analyses revealed that R. irregularis supported by a host plant was capable of infecting A. thaliana root tissues (up to 43% of root length colonized), but no arbuscules were observed. The results reveal high susceptibility of A. thaliana to R. irregularis, suggesting that A. thaliana is a suitable model plant to study non-host/AMF interactions and the biological basis of AM incompatibility.
- Published
- 2013
25. Mycorrhizal effects on nutrient cycling, nutrient leaching and N2O production in experimental grassland
- Author
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Sub Plant-Microbe Interactions, Dep Biologie, Plant Microbe Interactions, Bender, S.F., Conen, F., van der Heijden, M.G.A., Sub Plant-Microbe Interactions, Dep Biologie, Plant Microbe Interactions, Bender, S.F., Conen, F., and van der Heijden, M.G.A.
- Published
- 2015
26. Root surface as a frontier for plant microbiome research
- Author
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Sub Plant-Microbe Interactions, Dep Biologie, Plant Microbe Interactions, van der Heijden, M.G.A., Schlaeppi, Klaus, Sub Plant-Microbe Interactions, Dep Biologie, Plant Microbe Interactions, van der Heijden, M.G.A., and Schlaeppi, Klaus
- Published
- 2015
27. Soil biota enhance agricultural sustainability by improving crop yield, nutrient uptake and reducing nitrogen leaching losses
- Author
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Sub Plant-Microbe Interactions, Dep Biologie, Plant Microbe Interactions, Bender, S.F., van der Heijden, M.G.A., Sub Plant-Microbe Interactions, Dep Biologie, Plant Microbe Interactions, Bender, S.F., and van der Heijden, M.G.A.
- Published
- 2015
28. Mutualisms and community organization
- Author
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Kothamasi, D., Kiers, E.T., van der Heijden, M.G.A., Verhoef, H.A., Morin, J.P., and Animal Ecology
- Published
- 2010
29. Manipulating the jasmonate response: How do methyl jasmonate additions mediate characteristics of aboveground and belowground mutualisms?
- Author
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Kiers, E.T., Adler, L.S., Grman, E.L., van der Heijden, M.G.A., and Animal Ecology
- Subjects
fungi ,food and beverages - Abstract
Plants use a range of sophisticated strategies to protect themselves against herbivores and pathogens, such as the production of jasmonates, a group of plant hormones that prime the plant's defense system upon attack. However, defense-related mechanisms, such as the jasmonate response, play a more diverse role than previously appreciated. Jasmonates also regulate key mutualist relationships, leading to a suit of potential conflicting selection pressures as a single response is employed to mediate multiple species interactions. Here, we experimentally manipulate the host's jasmonate response and document the impact on two key plant mutualisms: (i) changes to arbuscular mycorrhizal symbionts belowground (ii) modifications to floral traits affecting pollinator mutualists aboveground. By exogenously applying a range of methyl jasmonate solutions to cucumber plant roots grown with and without mycorrhizal fungi, we are able to examine the potential costs of the jasmonate response to both above and belowground mutualists. We demonstrate that the negative effect of jasmonates on floral traits depends on whether the plant is mycorrhizal or nonmycorrhizal. Mycorrhization had a positive effect on floral traits, but benefits were lost with jasmonate application. While low levels of jasmonate decreased floral traits, these same jasmonate levels increased colonization by the mycorrhizal symbiont three-fold, but only under high phosphorus conditions. Our results highlight potential conflicts for the host in the regulation of their mutualists under different conditions and suggest that the overall impact of the jasmonate response depends on the plant mycorrhizal status and its nutrient context. These findings suggest that increasing the jasmonate response may lead to differential costs and benefits for plants and their mutualists, and highlight potential conflict in planta, with mycorrhizal symbionts benefiting from intermediate levels of jasmonates while certain floral traits can be depressed at this same level. © 2009 The Authors. Journal compilation © 2009 British Ecological Society.
- Published
- 2010
- Full Text
- View/download PDF
30. Microbial biodiversity and ecosystem functioning under controlled conditions and in the wild
- Author
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Bell, T, Gessner, M.O., Griffiths, R.I., McLaren, J., Morin, P.J., van der Heijden, M.G.A., van der Putten, W.H., Naeem, S., Bunker, A., Hector, M., Loreau, M., and Perrins, C.
- Published
- 2009
31. Mycorrhizal fungi reduce the negative effects of nitrogen enrichment on plant community structure in dune grassland
- Author
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van der Heijden, M.G.A., Verkade, S., de Bruin, S.J., Animal Ecology, and Systems Ecology
- Subjects
fungi ,food and beverages - Abstract
Nitrogen (N) inputs to ecosystems have increased worldwide, often leading to large changes in plant community structure and reducing plant diversity. Yet, the interaction of increased N availability with other factors that determine plant community composition, are still poorly understood. Here, we test whether the impact of N addition on plant communities depends on the presence of arbuscular mycorrhizal fungi (AMF). AMF are widespread plant symbionts that facilitate growth of many plant species. We hypothesize that AM fungi reduce the negative impact of N addition on plant communities by supporting growth of species that are sensitive to N enrichment.We established experimental grassland microcosms consisting of 18 plant species. These microcosms were subjected to high and low N supply and were inoculated with AMF or remained nonmycorrhizal. Both N addition and AMF had a big impact on plant community composition, but with opposite effects. N addition induced a 2.8-fold increase in grass biomass and reduced legume biomass. Grasses dominated the microcosms at high N supply, especially when AMF were absent. In contrast, AMF enhanced biomass of all legumes species (on average 6.8-fold) and reduced the relative abundance of grasses. The proportion of legume biomass out of total shoot biomass at high N supply was 19% with AMF and only 3% without AMF. Our results show that responses of plant communities to N enrichment depend on AMF and that AMF can reduce the negative impact of increased N availability on plant community structure by reducing grass dominance. © 2008 The Authors Journal compilation © 2008 Blackwell Publishing.
- Published
- 2008
- Full Text
- View/download PDF
32. The role of symbioses in seedling establishment and survival
- Author
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Horton, T.R., van der Heijden, M.G.A., Leck, M.A., Parker, V.T., Simpson, R.L., and Animal Ecology
- Published
- 2008
33. Vertical transport and plant uptake of nanoparticles in a soil mesocosm experiment
- Author
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Gogos A., Moll J., Klingenfuss F., van der Heijden M.G.A., Irin F., Green M.J., Zenobi R., and Bucheli T.D.
- Subjects
food and beverages - Abstract
Background: Agricultural soils represent a potential sink for increasing amounts of different nanomaterials that nowadays inevitably enter the environment. Knowledge on the relation between their actual exposure concentrations and biological effects on crops and symbiotic organisms is therefore of high importance. In this part of a joint companion study we describe the vertical translocation as well as plant uptake of three different titanium dioxide (nano )particles (TiO2 NPs) and multi walled carbon nanotubes (MWCNTs) within a pot experiment with homogenously spiked natural agricultural soil and two plant species (red clover and wheat). Results: TiO2 NPs exhibited limited mobility from soil to leachates and did not induce significant titanium uptake into both plant species although average concentrations were doubled from 4 to 8 mg/kg Ti at the highest exposures. While the mobility of MWCNTs in soil was limited as well microwave induced heating suggested MWCNT plant uptake independent of the exposure concentration. Conclusions: Quantification of actual exposure concentrations with a series of analytical methods confirmed nominal ones in soil mesocosms with red clover and wheat and pointed to low mobility and limited plant uptake of titanium dioxide nanoparticles and carbon nanotubes.
- Published
- 2016
- Full Text
- View/download PDF
34. Effect of nanoparticles on red clover and its symbiotic microorganisms
- Author
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Moll J., Gogos A., Bucheli T.D., Widmer F., and van der Heijden M.G.A.
- Abstract
Background: Nanoparticles are produced and used worldwide and are released to the environment e.g. into soil systems. Titanium dioxide (TiO2) nanoparticles (NPs) carbon nanotubes (CNTs) and cerium dioxide (CeO2) NPs are among the ten most produced NPs and it is therefore important to test whether these NPs affect plants and symbiotic microorganisms that help plants to acquire nutrients. In this part of a joint companion study we spiked an agricultural soil with TiO2 NPs multi walled CNTs (MWCNTs) and CeO2 NPs and we examined effects of these NP on red clover biological nitrogen fixation by rhizobia and on root colonization of arbuscular mycorrhizal fungi (AMF). We also tested whether effects depended on the concentrations of the applied NPs. Results: Plant biomass and AMF root colonization were not negatively affected by NP exposure. The number of flowers was statistically lower in pots treated with 3 mg kg-1 MWCNT and nitrogen fixation slightly increased at 3000 mg kg-1 MWCNT. Conclusions: This study revealed that red clover was more sensitive to MWCNTs than TiO2 and CeO2 NPs. Further studies are necessary for finding general patterns and investigating mechanisms behind the effects of NPs on plants and plant symbionts.
- Published
- 2016
- Full Text
- View/download PDF
35. Symbiotic bacteria as a determinant of plant community structure and plant productivity in dune grassland
- Author
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van der Heijden, M.G.A., Bakker, R., Verwaal, J., Scheublin, T.R., Rutten, M., van Logtestijn, R.S.P, Staehlin, C., Animal Ecology, and Systems Ecology
- Abstract
Symbiotic interactions are thought to play a key role in ecosystems. Empirical evidence for the impact of symbiotic bacteria on plant communities is, however, extremely scarce because of experimental constraints. Here, in three complementary experiments, we show that nitrogen-fixing rhizobia bacteria act as a determinant of plant community structure and diversity. Grassland microcosms inoculated with a mixture of rhizobia had a higher above-ground plant productivity (+35%), contained more nitrogen (+85%) and had significant higher community evenness (+34%) than control microcosms without rhizobia. Moreover, three of the four studied legume species required rhizobia to successfully coexist with other plant species. In contrast, the growth and survival of three grass and five forb species were not affected by the presence or absence of rhizobia. Finally, our results also showed that the legume species largely relied on symbiotically fixed nitrogen, both in the field and in the microcosms. This indicates that results in the microcosms are indicative for processes occurring in the field. It is concluded that symbiotic interactions between plants and prokaryotes can contribute to plant productivity, plant community structure and acquisition of limiting resources in legume-rich grassland communities. © 2006 Federation of European Microbiological Societies. Published by Blackwell Publishing Ltd. All rights reserved.
- Published
- 2006
- Full Text
- View/download PDF
36. Taxonomic and functional diversity in arbuscular myucorrhizal fungi - is there any relationship? Commentary
- Author
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van der Heijden, M.G.A., Scheublin, T.R., Brader, A., and Systems Ecology
- Published
- 2004
- Full Text
- View/download PDF
37. Arbuscular mycorrhizal fungi as support systems for seedling establishment in grassland
- Author
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van der Heijden, M.G.A. and Systems Ecology
- Subjects
fungi ,food and beverages - Abstract
Recruitment of new seedlings into the vegetation is essential for maintaining species rich plant communities. Hence it is of pivotal importance to understand factors determining seedling recruitment. Here it is tested whether arbuscular mycorrhizal fungi (AMF) promote seedling recruitment in perennial grassland communities. Seeds of four plant species (two grasses and two forbs) were added to patches within 1-year old grassland microcosms that were inoculated with different AMF taxa or to control microcosms that were not inoculated. The seedlings grew larger and obtained more phosphorus when AMF were present. Moreover, the seedlings obtained different amounts of phosphorus in microcosms inoculated with different AMF taxa. The results indicate that AMF promote seedling establishment by integrating emerging seedlings into extensive hyphal networks and by supplying nutrients to the seedlings. AMF, thus, act as a symbiotic support system that promotes seedling establishment and reduces recruitment limitation in grassland.
- Published
- 2004
- Full Text
- View/download PDF
38. Mycorrhizal Ecology. Ecological Studies 157
- Author
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van der Heijden, M.G.A., Sanders, I.R., and Systems Ecology
- Published
- 2002
39. The critical role of plant-microbe interactions for biodiversity and ecosystem functioning: arbuscular mycorrhizal associations as an example
- Author
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van der Heijden, M.G.A., Cornelissen, J.H.C., Loreau, M., Naeem, S., and Inchausti, P.
- Published
- 2002
40. The role of various types of mycorrhizal fungi in nutrient cycling and plant competition
- Author
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Aerts, R., van der Heijden, M.G.A., Sanders, I.R., and Systems Ecology
- Published
- 2002
41. Sustaining ecosystem functions in a changing world: a call for an integrated approach
- Author
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Tomimatsu, H., Sasaki, T., Bridle, J.R., Fontaine, C., Kitano, J., Stouffer, D.B., Vellend, M., Bezemer, T.M., Fukami, T., Hadly, E.A., Van der Heijden, M.G.A., Kawata, M., Kéfi, S., Kraft, N.J.B., McCann, K.S., Mumby, P.J., Nakashizuka, T., Petchey, O.L., Romanuk, T.N., Suding, K.N., Takimoto, G., Urabe, J., Yachi, S., Tomimatsu, H., Sasaki, T., Bridle, J.R., Fontaine, C., Kitano, J., Stouffer, D.B., Vellend, M., Bezemer, T.M., Fukami, T., Hadly, E.A., Van der Heijden, M.G.A., Kawata, M., Kéfi, S., Kraft, N.J.B., McCann, K.S., Mumby, P.J., Nakashizuka, T., Petchey, O.L., Romanuk, T.N., Suding, K.N., Takimoto, G., Urabe, J., and Yachi, S.
- Abstract
With ever-increasing human pressure on ecosystems, it is critically important to predict how ecosystem functions will respond to such human-induced perturbations. We define perturbations as either changes to abiotic environment (e.g. eutrophication, climate change) that indirectly affects biota, or direct changes to biota (e.g. species introductions). While two lines of research in ecology, biodiversity–ecosystem function (BDEF) and ecological resilience (ER) research, have addressed this issue, both fields of research have nontrivial shortcomings in their abilities to address a wide range of realistic scenarios. We outline how an integrated research framework may foster a deeper understanding of the functional consequences of perturbations via simultaneous application of (i) process-based mechanistic predictions using trait-based approaches and (ii) detection of empirical patterns of functional changes along real perturbation gradients. In this context, the complexities of ecological interactions and evolutionary perspectives should be integrated into future research. Synthesis and applications. Management of human-impacted ecosystems can be guided most directly by understanding the response of ecosystem functions to controllable perturbations. In particular, we need to characterize the form of a wide range of perturbation–function relationships and to draw connections between those patterns and the underlying ecological processes. We anticipate that the integrated perspectives will also be helpful for managers to derive practical implications for management from academic literature., With ever-increasing human pressure on ecosystems, it is critically important to predict how ecosystem functions will respond to such human-induced perturbations. We define perturbations as either changes to abiotic environment (e.g. eutrophication, climate change) that indirectly affects biota, or direct changes to biota (e.g. species introductions). While two lines of research in ecology, biodiversity–ecosystem function (BDEF) and ecological resilience (ER) research, have addressed this issue, both fields of research have nontrivial shortcomings in their abilities to address a wide range of realistic scenarios. We outline how an integrated research framework may foster a deeper understanding of the functional consequences of perturbations via simultaneous application of (i) process-based mechanistic predictions using trait-based approaches and (ii) detection of empirical patterns of functional changes along real perturbation gradients. In this context, the complexities of ecological interactions and evolutionary perspectives should be integrated into future research. Synthesis and applications. Management of human-impacted ecosystems can be guided most directly by understanding the response of ecosystem functions to controllable perturbations. In particular, we need to characterize the form of a wide range of perturbation–function relationships and to draw connections between those patterns and the underlying ecological processes. We anticipate that the integrated perspectives will also be helpful for managers to derive practical implications for management from academic literature.
- Published
- 2013
42. Tracking fungal community responses to maize plants by DNA- and RNA-based pyrosequencing
- Author
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Kuramae, E.E., Verbruggen, E., Hillekens, R.H.E., De Hollander, M., Röling, W.F.M., Van der Heijden, M.G.A., Kowalchuk, G.A., Kuramae, E.E., Verbruggen, E., Hillekens, R.H.E., De Hollander, M., Röling, W.F.M., Van der Heijden, M.G.A., and Kowalchuk, G.A.
- Abstract
We assessed soil fungal diversity and community structure at two sampling times (t1 = 47 days and t2 = 104 days of plant age) in pots associated with four maize cultivars, including two genetically modified (GM) cultivars by high-throughput pyrosequencing of the 18S rRNA gene using DNA and RNA templates. We detected no significant differences in soil fungal diversity and community structure associated with different plant cultivars. However, DNA-based analyses yielded lower fungal OTU richness as compared to RNA-based analyses. Clear differences in fungal community structure were also observed in relation to sampling time and the nucleic acid pool targeted (DNA versus RNA). The most abundant soil fungi, as recovered by DNA-based methods, did not necessary represent the most “active” fungi (as recovered via RNA). Interestingly, RNA-derived community compositions at t1 were highly similar to DNA-derived communities at t2, based on presence/absence measures of OTUs. We recovered large proportions of fungal sequences belonging to arbuscular mycorrhizal fungi and Basidiomycota, especially at the RNA level, suggesting that these important and potentially beneficial fungi are not affected by the plant cultivars nor by GM traits (Bt toxin production). Our results suggest that even though DNA- and RNA-derived soil fungal communities can be very different at a given time, RNA composition may have a predictive power of fungal community development through time., We assessed soil fungal diversity and community structure at two sampling times (t1 = 47 days and t2 = 104 days of plant age) in pots associated with four maize cultivars, including two genetically modified (GM) cultivars by high-throughput pyrosequencing of the 18S rRNA gene using DNA and RNA templates. We detected no significant differences in soil fungal diversity and community structure associated with different plant cultivars. However, DNA-based analyses yielded lower fungal OTU richness as compared to RNA-based analyses. Clear differences in fungal community structure were also observed in relation to sampling time and the nucleic acid pool targeted (DNA versus RNA). The most abundant soil fungi, as recovered by DNA-based methods, did not necessary represent the most “active” fungi (as recovered via RNA). Interestingly, RNA-derived community compositions at t1 were highly similar to DNA-derived communities at t2, based on presence/absence measures of OTUs. We recovered large proportions of fungal sequences belonging to arbuscular mycorrhizal fungi and Basidiomycota, especially at the RNA level, suggesting that these important and potentially beneficial fungi are not affected by the plant cultivars nor by GM traits (Bt toxin production). Our results suggest that even though DNA- and RNA-derived soil fungal communities can be very different at a given time, RNA composition may have a predictive power of fungal community development through time.
- Published
- 2013
43. Structural and functional variation in soil fungal communities associated with litter bags containing maize
- Author
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Kuramae, E.E., Hillekens, R.H.E., De Hollander, M., Van der Heijden, M.G.A., Van den Berg, M., Van Straalen, N.M., Kowalchuk, G.A., Kuramae, E.E., Hillekens, R.H.E., De Hollander, M., Van der Heijden, M.G.A., Van den Berg, M., Van Straalen, N.M., and Kowalchuk, G.A.
- Published
- 2013
44. Provision of contrasting ecosystem services by soil communities from different agricultural fields
- Author
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Verbruggen, E., Kiers, E.T., Bakelaar, P.N.C., Röling, W.F.M., van der Heijden, M.G.A., Verbruggen, E., Kiers, E.T., Bakelaar, P.N.C., Röling, W.F.M., and van der Heijden, M.G.A.
- Abstract
Several studies have shown that soil biotic communities from organically managed fields are more diverse and exhibit higher activity levels compared to conventionally managed fields. The impact of these different soil communities on plant productivity and the provision of soil ecosystem services are, however, still unclear. Here, we test the effects of soil inoculation from each of three organic and three conventional maize fields on maize productivity and nutrient loss during leaching events induced by simulated rain. In particular, we examine whether differences in productivity and nutrient loss are related to the abundance and species composition of arbuscular mycorrhizal (AM) fungi. We hypothesized that soil biota from organically managed fields would improve maize growth and reduce nutrient leaching significantly more than those from conventionally managed fields. In contrast to our hypothesis, we found that plant productivity was negatively affected by soil inoculation, and this effect was stronger with inoculum from organic fields. Plant productivity was inversely correlated with AMF abundance, suggesting that enhanced carbon allocation to AMF is at least in part responsible for plant growth reduction under our experimental conditions. However, soil inoculation did alter the ecological functioning of the system by reducing phosphorus leaching losses after simulated rain. Moreover, these leaching losses were lower with increased hyphal density and were related with abundance of particular AMF types, suggesting that abundance of AMF and their community composition may be useful indicators of phosphorus leaching losses. The results demonstrate that soil communities from different agricultural fields vary in their impact on plant productivity and nutrient leaching losses. The results further indicate that there is a potential tradeoff between positive effects of soil communities on sustainability and negative effects on crop productivity.
- Published
- 2012
45. Soil communities from organically and conventionally managed fields provide different agro-ecosystem services
- Author
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Verbruggen, E., Kiers, E.T., Bakelaar, P.N.C., Röling, W.F.M., van der Heijden, M.G.A., Verbruggen, E., Kiers, E.T., Bakelaar, P.N.C., Röling, W.F.M., and van der Heijden, M.G.A.
- Published
- 2012
46. Soil communities from organically and conventionally managed fields provide different agro-ecosystem services
- Author
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Plant Microbe Interactions, Sub Plant-Microbe Interactions, Verbruggen, E., Kiers, E.T., Bakelaar, P.N.C., Röling, W.F.M., van der Heijden, M.G.A., Plant Microbe Interactions, Sub Plant-Microbe Interactions, Verbruggen, E., Kiers, E.T., Bakelaar, P.N.C., Röling, W.F.M., and van der Heijden, M.G.A.
- Published
- 2012
47. Testing Potential Effects of Maize Expressing the Bacillus thuringiensis Cry1Ab Endotoxin (Bt Maize) on Mycorrhizal Fungal Communities via DNA- and RNA-Based Pyrosequencing and Molecular Fingerprinting
- Author
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Verbruggen, E., Kuramae, E.E., Hillekens, R.H.E., De Hollander, M., Kiers, E.T., Roling, W.F.M., Kowalchuk, G.A., Van der Heijden, M.G.A., Verbruggen, E., Kuramae, E.E., Hillekens, R.H.E., De Hollander, M., Kiers, E.T., Roling, W.F.M., Kowalchuk, G.A., and Van der Heijden, M.G.A.
- Abstract
The cultivation of genetically modified (GM) crops has increased significantly over the last decades. However, concerns have been raised that some GM traits may negatively affect beneficial soil biota, such as arbuscular mycorrhizal fungi (AMF), potentially leading to alterations in soil functioning. Here, we test two maize varieties expressing the Bacillus thuringiensis Cry1Ab endotoxin (Bt maize) for their effects on soil AM fungal communities. We target both fungal DNA and RNA, which is new for AM fungi, and we use two strategies as an inclusive and robust way of detecting community differences: (i) 454 pyrosequencing using general fungal rRNA gene-directed primers and (ii) terminal restriction fragment length polymorphism (T-RFLP) profiling using AM fungus-specific markers. Potential GM-induced effects were compared to the normal natural variation of AM fungal communities across 15 different agricultural fields. AM fungi were found to be abundant in the experiment, accounting for 8% and 21% of total recovered DNA- and RNA-derived fungal sequences, respectively, after 104 days of plant growth. RNA- and DNA-based sequence analyses yielded most of the same AM fungal lineages. Our research yielded three major conclusions. First, no consistent differences were detected between AM fungal communities associated with GM plants and non-GM plants. Second, temporal variation in AMF community composition (between two measured time points) was bigger than GM trait-induced variation. Third, natural variation of AMF communities across 15 agricultural fields in The Netherlands, as well as within-field temporal variation, was much higher than GM-induced variation. In conclusion, we found no indication that Bt maize cultivation poses a risk for AMF., The cultivation of genetically modified (GM) crops has increased significantly over the last decades. However, concerns have been raised that some GM traits may negatively affect beneficial soil biota, such as arbuscular mycorrhizal fungi (AMF), potentially leading to alterations in soil functioning. Here, we test two maize varieties expressing the Bacillus thuringiensis Cry1Ab endotoxin (Bt maize) for their effects on soil AM fungal communities. We target both fungal DNA and RNA, which is new for AM fungi, and we use two strategies as an inclusive and robust way of detecting community differences: (i) 454 pyrosequencing using general fungal rRNA gene-directed primers and (ii) terminal restriction fragment length polymorphism (T-RFLP) profiling using AM fungus-specific markers. Potential GM-induced effects were compared to the normal natural variation of AM fungal communities across 15 different agricultural fields. AM fungi were found to be abundant in the experiment, accounting for 8% and 21% of total recovered DNA- and RNA-derived fungal sequences, respectively, after 104 days of plant growth. RNA- and DNA-based sequence analyses yielded most of the same AM fungal lineages. Our research yielded three major conclusions. First, no consistent differences were detected between AM fungal communities associated with GM plants and non-GM plants. Second, temporal variation in AMF community composition (between two measured time points) was bigger than GM trait-induced variation. Third, natural variation of AMF communities across 15 agricultural fields in The Netherlands, as well as within-field temporal variation, was much higher than GM-induced variation. In conclusion, we found no indication that Bt maize cultivation poses a risk for AMF.
- Published
- 2012
48. Provision of contrasting ecosystem services by soil communities from different agricultural fields
- Author
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Plant Microbe Interactions, Sub Plant-Microbe Interactions, Verbruggen, E., Kiers, E.T., Bakelaar, P.N.C., Röling, W.F.M., van der Heijden, M.G.A., Plant Microbe Interactions, Sub Plant-Microbe Interactions, Verbruggen, E., Kiers, E.T., Bakelaar, P.N.C., Röling, W.F.M., and van der Heijden, M.G.A.
- Published
- 2012
49. Mycorrhizal fungi suppress aggressive Agricultural weeds.
- Author
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Rinaudo, V., Barberi, P., Giovannetti, M., van der Heijden, M.G.A., Rinaudo, V., Barberi, P., Giovannetti, M., and van der Heijden, M.G.A.
- Abstract
Plant growth responses to arbuscular mycorrhizal fungi (AMF) are highly variable, ranging from mutualism in a wide range of plants, to antagonism in some non-mycorrhizal plant species and plants characteristic of disturbed environments. Many agricultural weeds are non mycorrhizal or originate from ruderal environments where AMF are rare or absent. This led us to hypothesize that AMF may suppress weed growth, a mycorrhizal attribute which has hardly been considered. We investigated the impact of AMF and AMF diversity (three versus one AMF taxon) on weed growth in experimental microcosms where a crop (sunflower) was grown together with six widespread weed species. The presence of AMF reduced total weed biomass with 47% in microcosms where weeds were grown together with sunflower and with 25% in microcosms where weeds were grown alone. The biomass of two out of six weed species was significantly reduced by AMF (-66% & -59%) while the biomass of the four remaining weed species was only slightly reduced (-20% to -37%). Sunflower productivity was not influenced by AMF or AMF diversity. However, sunflower benefitted from AMF via enhanced phosphorus nutrition. The results indicate that the stimulation of arbuscular mycorrhizal fungi in agro-ecosystems may suppress some aggressive weeds. © 2009 Springer Science+Business Media B.V.
- Published
- 2010
- Full Text
- View/download PDF
50. Arbuscular mycorrhizal fungi colonize nonfixing roots nodules of several legume species
- Author
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Scheublin, T.R., van der Heijden, M.G.A., Scheublin, T.R., and van der Heijden, M.G.A.
- Abstract
Many legumes form tripartite symbiotic associations with rhizobia and arbuscular mycorrhizal fungi (AMF). Rhizobia are located in root nodules and provide the plant with fixed atmospheric nitrogen, while AMF colonize plant roots and deliver several essential nutrients to the plant. Recent studies showed that AMF are also associated with root nodules. This might point to interactions between AMF and rhizobia inside root nodules. Here, we test whether AMF colonize root nodules in various plant-AMF combinations. We also test whether nodules that are colonized by AMF fix nitrogen. Using microscopy, we observed that AMF colonized the root nodules of three different legume species. The AMF colonization of the nodules ranged from 5% to 74% and depended on plant species, AMF identity and nutrient availability. However, AMF-colonized nodules were not active, that is, they did not fix nitrogen. The results suggest that AMF colonize old senescent nodules after nitrogen fixation has stopped, although it is also possible that AMF colonization of nodules inhibits nitrogen fixation. © The Authors (2006).
- Published
- 2006
- Full Text
- View/download PDF
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