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Sub-Saharan Africa is under-represented in global biodiversity datasets, particularly regarding the impact of land use on species population abundances. Drawing on recent advances in expert elicitation to ensure data consistency, 200 experts were convened using a modified-Delphi process to estimate intactness scores: the remaining proportion of an intact reference population of a species group in a particular land use, on a scale from 0 (no remaining individuals) to 1 (same abundance as the reference) and, in rare cases, to 2 (populations that thrive in human-modified landscapes). The resulting bii4africa dataset contains intactness scores representing terrestrial vertebrates (tetrapods: ±5,400 amphibians, reptiles, birds, mammals) and vascular plants (±45,000 forbs, graminoids, trees, shrubs) in sub-Saharan Africa across the regions major land uses (urban, cropland, rangeland, plantation, protected, etc.) and intensities (e.g., large-scale vs smallholder cropland). This dataset was co-produced as part of the Biodiversity Intactness Index for Africa Project. Additional uses include assessing ecosystem condition; rectifying geographic/taxonomic biases in global biodiversity indicators and maps; and informing the Red List of Ecosystems.

Aim: Diet is a key aspect of life in animals. There have been numerous independent origins of herbivorous diet across animals, but the factors that explain these origins remain poorly understood. One potentially crucial factor is body temperature (Tb), as the gut‐dwelling bacteria that help digest cellulose in many herbivores are thought to require high temperatures. However, analyses in birds, lizards and mammals found only limited evidence for higher Tb in herbivores than in carnivores. These analyses tested whether diet explains Tb evolution. Here, we focus instead on testing whether Tb helps explain the evolution of diet across tetrapods. Location: Global. Time Period: Past 350 million years. Major Taxa Studied: Tetrapods. Methods: We analysed 1712 species with matched data on diet and Tb using diverse phylogenetic methods. Results: Ancestral reconstructions indicated that tetrapods likely had a carnivorous ancestor, followed by repeated transitions to omnivory and herbivory, especially in the last 110 million years. Thus, extant herbivorous lineages in tetrapods are relatively young, in contrast to many older carnivorous lineages. They are also relatively unstable in that reversals from herbivory back to omnivory and from omnivory back to carnivory were as frequent as the origins of herbivory and omnivory. Using phylogenetic logistic regression, we support the hypothesis that higher Tb helps explain the evolution of herbivory across tetrapods and within birds, mammals, lepidosaurs and turtles. Phylogenetic path analyses suggest that Tb generally drives the evolution of herbivory, and not vice versa. Our analyses also suggest that Tb is more important for the evolution of herbivory than large body size or diurnal diel activity, which are both significant predictors of herbivory in some cases. Main Conclusions: Our results show for the first time that Tb is a significant predictor of diet evolution among and within many major animal clades. [ABSTRACT FROM AUTHOR]

Animal gut microbiomes are critical to host physiology and fitness. The gut microbiomes of fishes—the most abundant and diverse vertebrate clade—have received little attention relative to other clades. Coral reef fishes, in particular, make up a wide range of evolutionary histories and feeding ecologies that are likely associated with gut microbiome diversity. The repeated evolution of herbivory in fishes and mammals also allows us to examine microbiome similarity in relationship to diet across the entire vertebrate tree of life. Here, we generate a large coral reef fish gut microbiome dataset (n = 499 samples, 19 species) and combine it with a diverse aggregation of public microbiome data (n = 447) to show that host diet drives significant convergence between coral reef fish and mammalian gut microbiomes. We demonstrate that this similarity is largely driven by carnivory and herbivory and that herbivorous and carnivorous hosts exhibit distinct microbial compositions across fish and mammals. We also show that fish and mammal gut microbiomes share prominent microbial taxa, including Ruminoccocus spp. and Akkermansia spp., and predicted metabolic pathways. Despite the major evolutionary and ecological differences between fishes and mammals, our results reveal that their gut microbiomes undergo similar dietary selective pressures. Thus, diet, in addition to phylosymbiosis must be considered even when comparing the gut microbiomes of distantly related hosts. [ABSTRACT FROM AUTHOR]

The surveillance and detection of zoonotic pathogens in animals is essential for predicting disease transmission pathways and the risks of spillover, but challenges include the costs, ethics and technical expertise required for vertebrate trapping, serum sampling and antibody or virus screening. Surveillance using haematophagous arthropods as a sampling tool offers a unique opportunity to obtain blood samples from a wide range of vertebrate species, allowing the study of host-mosquito associations, and host exposure to pathogens. We explored vertebrate diversity and potential Ross River virus (RRV) transmission pathways by analysing blood-fed mosquitoes collected in Brisbane, Australia. Host origins were identified using barcode sequencing, and host exposure to RRV was assessed using a modified plaque reduction neutralisation test. In total, 480 blood-fed mosquitoes were collected between February 2021 and May 2022. The host origins of 346 (72%) bloodmeals were identified, with humans (73%) and cattle (9%) comprising the dominant hosts. RRV seroprevalence was high in both vertebrate species with evidence of RRV exposure in 70% (21/30) of cattle and 52% (132/253) of humans. This is a novel, non-invasive method of estimating seroprevalence in vertebrate host populations. Our results highlight the potential of blood-fed mosquitoes to provide species-specific insights into pathogen transmission dynamics. [ABSTRACT FROM AUTHOR]

The 47 vertebrate type specimens held in the University of Otago Geology Department are catalogued in detail. A short history of the collection is followed by lists of the type specimens under the Classes Actinopterygii, Reptilia, Aves and Mammalia. A fish trace-fossil is included at the end of the Actinopterygii. Where appropriate, the name changes of the genus or species are given in chronological order. The specimens are briefly described, locality and geological age information is provided. [ABSTRACT FROM AUTHOR]

Context. The population of introduced fallow deer (Dama dama) is thought to have increased exponentially across much of the island of Tasmania, Australia, since 2000. Historically, deer management decisions have relied on population trend data from vehicular spotlight surveys. Renewed focus on the contemporary management of the species requires development of more robust and precise population estimation methodology. Aims. This study demonstrates two aerial survey methods – conventional counts by trained human observers, and thermal imaging footage recorded during the same flights – to inform future survey practices. Methods. Conventional counts were carried out by three observers, two seated on the left side of the helicopter, and one on the right. A high-resolution thermal camera was fitted to the helicopter and was orientated to meet the assumptions of distance sampling methodologies. Both survey methods were used to generate deer population density estimates. Spatial distribution of deer was also analysed in relation to patches of remnant native vegetation across an agricultural landscape. Mark–recapture distance sampling was used to estimate density from human observer counts and provide a comparison to the distance sampling estimates derived from the thermal camera. Key results. Human observer counts gave a density estimate of 2.7 deer per km2, while thermal camera counts provided an estimate of 2.8 deer per km2. Deer population density estimates calculated via both methods were similar, but variability of the thermal camera estimate (coefficient of variation (CV) of 36%) was unacceptably high. Human observer data was within acceptable bounds of variability (CV, 19%). The estimated population size in central and north-eastern Tasmania for 2019 approximated 53,000 deer. Deer were primarily congregated within 200 metres of the interface between canopy cover and open pasture. Conclusions. The population density estimate provides a baseline for monitoring and managing the Tasmanian deer population. Human observer data was more precise than thermal camera data in this study, but thermal counts could be improved by reducing sources of variability. Implications. Improvements for the collection of thermal imagery are recommended. Future control efforts may be more efficient if they preferentially target habitat edges at this time of year, paired with random or grid-based searches where population density is lower. [ABSTRACT FROM AUTHOR]

The colonization of the pelagic realm by the vertebrates represents one of the major transitions in the evolutionary success of the group and in the establishment of modern complex marine ecosystem. It has been traditionally related with the Devonian rise of jawed vertebrates, but new evidences indicate that first active swimmers, invading the water column, occurred within earlier armoured jawless fishes ("ostracoderms"). These "primitive" fishes lacked conventional fish control surfaces and the precise mechanism used to generate lift and stabilizing forces still remains unclear. We show that, because of their shape, the rigid cephalic shield of Pteraspidiformes, a group of Silurian-Devonian "ostracoderms", generate significant forces for hydrodynamic lift. Particle Image Velocimetry and force measurements in a water channel shows that the flow over real-sized Pteraspidiformes models is similar to that over delta wings, dominated by the formation of leading-edge vortices resulting in enhanced vortex lift forces and delayed stall angles of attack. Additionally, experiments simulating ground effect show that Pteraspidiformes present better hydrodynamic performance under fully pelagic conditions than in a benthic scenario. This suggests that, lacking movable appendages other than the caudal fin, leading-edge vortices were exploited by earliest vertebrates to colonize the water column more than 400 Mya. Digital particle image velocimetry and force measurements in a water channel provide evidence that leading-edge vortices could be exploited by earliest vertebrates to colonize the water column more than 400 Mya. [ABSTRACT FROM AUTHOR]

The emergence of myelinating oligodendrocytes represents a pivotal developmental milestone in vertebrates, given their capacity to ensheath axons and facilitate the swift conduction of action potentials. It is widely accepted that cortical oligodendrocyte progenitor cells (OPCs) arise from medial ganglionic eminence (MGE), lateral/caudal ganglionic eminence (LGE/CGE), and cortical radial glial cells (RGCs). Here, we used two different fate mapping strategies to challenge the established notion that the LGE generates cortical OPCs. Furthermore, we used a Cre/loxP-dependent exclusion strategy to reveal that the LGE/CGE does not give rise to cortical OPCs. Additionally, we showed that specifically eliminating MGE-derived OPCs leads to a significant reduction of cortical OPCs. Together, our findings indicate that the LGE does not generate cortical OPCs, contrary to previous beliefs. These findings provide a new view of the developmental origins of cortical OPCs and a valuable foundation for future research on both normal development and oligodendrocyte-related disease. [ABSTRACT FROM AUTHOR]

The Upper Carboniferous protorothyridid amniote Brouffia orientalis from Czech Republic is redescribed. Photogrammetric scanning of the holotype and only known specimen yields considerable new information on the skull and postcranium of this tetrapod and allows us to amend previous morphological descriptions to a substantial degree. A virtual 3D model built from photogrammetry scan data is used as the basis for a new reconstruction of the skull in dorsal, lateral, and ventral aspects and the lower jaw in lateral aspect. We expand and refine the diagnosis of Brouffia and compare it with other protorothyridids. We discuss the affinities of this taxon by coding it in a recently published data matrix of early amniotes, which we subject to maximum parsimony and Bayesian fossilized birth–death analyses. Brouffia emerges as the sister taxon to Coelostegus in all analyses, but the position of these two taxa within amniotes varies. In a parsimony analysis with unweighted characters, the (Brouffia + Coelostegus) clade forms the sister group to Synapsida. In various experiments of character reweighting, that clade is placed crownward of Captorhinidae on the stem-group of Reptilia, but anticrownward of remaining protorothyridids. The latter constitute either a paraphyletic array relative to Diapsida or their monophyletic sister group. The Bayesian analysis retrieves (Brouffia + Coelostegus) as the most basal plesion on the stem-group of Reptilia. [ABSTRACT FROM AUTHOR]

ABSTRACT Aim Location Time Period Major Taxa Studied Methods Results Main Conclusions Habitat loss is the dominant cause of biodiversity decline around the world, yet the complexity and stability of terrestrial assemblages related to suitable habitats have been almost unknown on a global scale.Global.Contemporary.Mammalia, Aves, Reptilia, Amphibia.We constructed gridded maps of species–habitat networks of terrestrial vertebrates based on global species distributions and a recently developed habitat type dataset. Then, we investigated the biogeographic patterns of emergent network structures and analysed network robustness to habitat loss by simulating habitat removals on a global scale.We found that, compared with reptiles and amphibians, the species–habitat networks of mammals and birds were characterised by higher habitat diversity, connectance and modularity. All four taxonomical groups have high robustness globally, but after adjusting for species and habitat diversity, we found a variation of surplus and deficiency of network structures and robustness. Temperature and precipitation contributed most to relative network robustness globally, whereas geographical and human population factors played important roles in scattered regions on all continents.Overall, we provide novel insights into the biogeographic patterns of species–habitat connections through a network approach, which can help to identify gaps for reestablishing species–habitat links to improve conservation outcomes. [ABSTRACT FROM AUTHOR]

The living coelacanth Latimeria (Sarcopterygii: Actinistia) is an iconic, so-called 'living fossil' within one of the most apparently morphologically conservative vertebrate groups. We describe a new, 3-D preserved coelacanth from the Late Devonian Gogo Formation in Western Australia. We assemble a comprehensive analysis of the group to assess the phylogeny, evolutionary rates, and morphological disparity of all coelacanths. We reveal a major shift in morphological disparity between Devonian and post-Devonian coelacanths. The newly described fossil fish fills a critical transitional stage in coelacanth disparity and evolution. Since the mid-Cretaceous, discrete character changes (representing major morphological innovations) have essentially ceased, while meristic and continuous characters have continued to evolve within coelacanths. Considering a range of putative environmental drivers, tectonic activity best explains variation in the rates of coelacanth evolution. Coelacanths are known for their conservative morphology. Here, the authors describe a 380 million year-old coelacanth fossil from the Gogo Formation (Western Australia) with morphology representative of a key transition where coelacanth morphology disparity shifts. [ABSTRACT FROM AUTHOR]

Much of what we know about terrestrial life during the Carboniferous Period comes from Middle Pennsylvanian (~315–307 Mya) Coal Measures deposited in low-lying wetland environments1–5. We know relatively little about terrestrial ecosystems from the Early Pennsylvanian, which was a critical interval for the diversification of insects, arachnids, tetrapods, and seed plants6–10. Here we report a diverse Early Pennsylvanian trace and body fossil Lagerstätte (~320–318 Mya) from the Wamsutta Formation of eastern North America, distinct from coal-bearing deposits, preserved in clastic substrates within basin margin conglomerates. The exceptionally preserved trace fossils and body fossils document a range of vertebrates, invertebrates and plant taxa (n = 131), with 83 distinct foliage morphotypes. Plant-insect interactions include what may be the earliest evidence of insect oviposition. This site expands our knowledge of early terrestrial ecosystems and organismal interactions and provides ground truth for future phylogenetic reconstructions of key plant, arthropod, and vertebrate groups. Our knowledge of life in the Carboniferous Period is largely restricted to low-lying wetlands dated to 315–310 million years ago. Here, the authors present an older Lagerstätte on an alluvial fan 320–318 million years ago, preserving a diverse ecosystem of vertebrates, invertebrates, plants, and plant-insect interactions. [ABSTRACT FROM AUTHOR]

Summary The study of antibodies in jawed vertebrates (gnathostomes) provides every immunologist with a bird's eye view of how human immunoglobulins (Igs) came into existence and subsequently evolved into their present forms. It is a fascinating Darwinian history of conservation on the one hand and flexibility on the other, exemplified by the Ig heavy chain (H) isotypes IgM and IgD/W, respectively. The cartilaginous fish (e.g., sharks) Igs provide a glimpse of “how everything got off the ground,” while the amphibians (e.g., the model Xenopus) reveal how the adaptive immune system made an about face with the emergence of Ig isotype switching and IgG‐like structure/function. The evolution of mucosal Igs is a captivating account of malleability, convergence, and conservation, and a call to arms for future study! In between there are spellbinding chronicles of antibody evolution in each class of vertebrates and rather incredible stories of how antibodies can adapt to occupy niches, for example, single‐domain variable regions, cold‐adapted Igs, convergent mechanisms to dampen antibody function, provision of mucosal defense, and many more. The purpose here is not to provide an encyclopedic examination of antibody evolution, but rather to hit the high points and entice readers to appreciate how things “came to be.” [ABSTRACT FROM AUTHOR]

Our knowledge of alphavirus genetic diversity is mainly based on viruses isolated from anthropophilic mosquito species, humans, and livestock during outbreaks. Studies on alphaviruses from sylvatic amplification cycles in sub-Saharan Africa have been conducted less often than from epizootic environments. To gain insight into alphavirus diversity in enzootic transmission cycles, we collected over 23,000 mosquitoes in lowland rainforest and savannah gallery forest in southwestern Uganda and tested them for alphavirus infections. We detected Sindbis virus (SINV) in a Culex Culex sp. mosquito and Middelburg virus (MIDV) in Eretmapodites intermedius and Mansonia africana. MIDV is a mosquito-borne alphavirus that causes febrile illness in sheep, goats, and horses and was previously not known to occur in Uganda. SINV, also a mosquito-borne alphavirus, causes mild infections in humans. Full genomes of SINV and MIDV were sequenced, showing a nucleotide identity of 99% to related strains. Both isolates replicated to high titres in a wide variety of vertebrate cells. Our data suggest endemic circulation of SINV and MIDV in Uganda. [ABSTRACT FROM AUTHOR]

We reported the first complete mitochondrial genome of the Scarlet Fighting Fish, Betta coccina (Vierke, 1979), a species of concern due to its vulnerable status. Genome skimming was performed on a specimen collected from Johor, Malaysia to recover its mitochondrial genome. The assembled complete mitogenome is 16,502 bp in size, comprising the standard set of 13 protein-coding genes, 22 tRNAs, and two rRNAs, typical of most vertebrates' mitogenome. Phylogenetic analysis was conducted using the whole mitogenome of B. coccina and four publicly available mitogenomes of Betta spp. Our analysis revealed that the B. coccina currently occupied a basal position relative to other Betta spp. with maximal support value. Our results provide valuable insights for both evolutionary studies and genetic conservation efforts of B. coccina and its related species. [ABSTRACT FROM AUTHOR]

Dystocia, or obstructed labor, is a well‐documented phenomenon in various captive vertebrates, including fish. However, despite the documentation of dystocia in several viviparous (live‐bearing) Chondrichthyan species (i.e., sharks, rays, skates, and chimaeras), there are no reports to date of dystocia in any oviparous (egg‐laying) species. Here we present a case of a captive female epaulette shark (Hemiscyllium ocellatum) that demonstrated symptoms of dystocia in a research‐related captive breeding programme. This communication serves as documentation that dystocia can occur in oviparous Chondrichthyans, and this information can help inform researchers and veterinary practitioners for improved care. [ABSTRACT FROM AUTHOR]

The Lactobacillales (LB) stand apart among bacterial orders, using manganese (Mn) instead of iron to support their growth and swiftly ferment complex foods while acidifying their environment. The present work investigates whether a shift in the use of Mn could mark the origin of LB. Transmembrane carriers of the ubiquitous Slc11 family play key roles in LB physiology by catalyzing proton-dependent Mn import. In prior studies, the Slc11 clade found in LB (MntH Cb, MCb) showed both remarkable structural plasticity and highly efficient Mn uptake, and another Slc11 clade, MCg1, demonstrated divergent evolution coinciding with emergence of bacterial genera (e.g., Bordetella, Achromobacter). Herein, the Slc11 clade MCb is subdivided in sister groups: MCbie and MCbgut. MCbie derives directly from the Slc11 clade MCa, pointing an intermediate stage in the evolution of MCbgut. MCbie predominates in marine Bacillaceae, is more conserved than MCbgut, lacks the structural plasticity that typify MCbgut carriers, and responds differently to identical mutagenesis. Exchanging MCbie/MCbgut amino acid residues at sites that distinguish these clades showed conformation-dependent effects with both MCbie and MCbgut templates, and the 3D location of the targeted sites in the carrier structure together suggests that the mechanism to open the inner gate, and release Mn into the cytoplasm, differs between MCbie and MCbgut. Building on the established phylogeny for Enterococcus revealed that a pair of genes encoding MCbgut was present in the common ancestor of LB, as MCbgu1 and MCbgu2 templates exhibited distinct structural dynamics properties. These data are discussed when examining whether MCbgut+ LB could emerge in the upper gut of early vertebrates (ca. 540 mya), through genome contraction and evolution toward Mn-centrism, as they specialized as gastric aids favoring stomach establishment in jawed vertebrates through bi-directional communication with host nervous, endocrine and immune systems. [ABSTRACT FROM AUTHOR]

Category learning is often tested with similar images that have no significance outside of the experiment for the subjects. By contrast, in nature animals often need to generalize a behavioral response like "eat" across visually distinct stimuli, such as spiders and seeds. Forming functional categories like "food" and "predator" may require conceptual rather than purely perceptual generalization. We trained free-range chickens to classify images assigned to one of four categories based on putative functional significance: inanimate objects, predators, food, and non-competing vertebrates. Images were visually diverse within each category, discouraging classification by perceptual similarity alone. In Experiment 1, chickens classified 80 images into four categories. Chickens then generalized to 80 new exemplars in each of three successive generalization tests. In Experiment 2, chickens saw new types of images to test whether their generalization was perceptual or functional. For example, chickens saw images of skunks for the predator category after training with images of hawks and snakes. Chickens used the "predator" response with these new images for both predators and non-threatening vertebrates, but not for objects or food, and did not successfully generalize any category other than predator. In Experiment 3, chickens categorized fractals as "food," and three of four chickens categorized a range of vertebrates they had not previously encountered as "predators," suggesting that chickens did not see the images as representing real world objects and animals. These results highlight constraints on the use of computer-generated images to assess categorization of natural stimuli in chickens. [ABSTRACT FROM AUTHOR]

A new species of Dayongaspidae, Dayongaspis colubra sp. nov., is described from the Telychian (Llandovery, Silurian) Xiushan Formation at Maoyanhe Town, Zhangjiajie, Hunan Province, China. The new species is distinguished from the type species D. hunanensis by its larger-sized headshield, tiny and dense granular tubercles, and triangular-shaped inner cornual processes. Additionally, it reveals more galeaspid plesiomorphic characters than D. hunanensis, such as the inverted splayed posterior supraorbital canals (soc2) and the paired endolymphatic openings on the headshields. This new finding represents the first fossil record of galeaspids in the Xiushan Formation, thereby enriching the diversity of galeaspids. Furthermore, it extends the Wentang Vertebrate Assemblage upwards into the lower part of Xiushan Formation, indicating a broader stratigraphic range than previously assumed. [ABSTRACT FROM AUTHOR]

What are the roles of determinism and contingency in evolution? The paleontologist and evolutionary biologist Stephen J. Gould raised this question in his famous thought experiment of replaying lifes tape. Settings where independent lineages have repeatedly adapted to similar ecological niches (i.e., parallel evolution) are well suited to address this question. Here, we quantified whether repeated ecological shifts across 53 mammalian and 50 avian host species are associated with parallel gut microbiota changes. Our results indicate that parallel shifts in host diet are associated with greater gut microbiota parallelism (i.e., more deterministic). While further research will be necessary to obtain a comprehensive picture of the circumstances under which deterministic gut microbiota changes might be expected, our study can be instrumental in motivating the use of more quantitative methods in microbiota research. This, in turn, can help us better understand microbiota dynamics during adaptive evolution of their hosts.

During vertebrate gastrulation, an embryo transforms from a layer of epithelial cells into a multilayered gastrula. This process requires the coordinated movements of hundreds to tens of thousands of cells, depending on the organism. In the chick embryo, patterns of actomyosin cables spanning several cells drive coordinated tissue flows. Here, we derive a minimal theoretical framework that couples actomyosin activity to global tissue flows. Our model predicts the onset and development of gastrulation flows in normal and experimentally perturbed chick embryos, mimicking different gastrulation modes as an active stress instability. Varying initial conditions and a parameter associated with active cell ingression, our model recapitulates distinct vertebrate gastrulation morphologies, consistent with recently published experiments in the chick embryo. Altogether, our results show how changes in the patterning of critical cell behaviors associated with different force-generating mechanisms contribute to distinct vertebrate gastrulation modes via a self-organizing mechanochemical process.

The basic plan of the retina is conserved across vertebrates, yet species differ profoundly in their visual needs1. Retinal cell types may have evolved to accommodate these varied needs, but this has not been systematically studied. Here we generated and integrated single-cell transcriptomic atlases of the retina from 17 species: humans, two non-human primates, four rodents, three ungulates, opossum, ferret, tree shrew, a bird, a reptile, a teleost fish and a lamprey. We found high molecular conservation of the six retinal cell classes (photoreceptors, horizontal cells, bipolar cells, amacrine cells, retinal ganglion cells (RGCs) and Müller glia), with transcriptomic variation across species related to evolutionary distance. Major subclasses were also conserved, whereas variation among cell types within classes or subclasses was more pronounced. However, an integrative analysis revealed that numerous cell types are shared across species, based on conserved gene expression programmes that are likely to trace back to an early ancestral vertebrate. The degree of variation among cell types increased from the outer retina (photoreceptors) to the inner retina (RGCs), suggesting that evolution acts preferentially to shape the retinal output. Finally, we identified rodent orthologues of midget RGCs, which comprise more than 80% of RGCs in the human retina, subserve high-acuity vision, and were previously believed to be restricted to primates2. By contrast, the mouse orthologues have large receptive fields and comprise around 2% of mouse RGCs. Projections of both primate and mouse orthologous types are overrepresented in the thalamus, which supplies the primary visual cortex. We suggest that midget RGCs are not primate innovations, but are descendants of evolutionarily ancient types that decreased in size and increased in number as primates evolved, thereby facilitating high visual acuity and increased cortical processing of visual information.

The evolutionary origin of the inverted retina in the vertebrate eye is unknown. This paper explores a hypothetical evolutionary scenario that explains the unique orientation of the photoreceptors in the vertebrate retina. The proposed scenario follows the scientific accepted scenario for eye evolution and gradually builds up towards an eye prototype by considering light direction detection and increase in achievable spatial resolution as the driving forces. It suggests that eye retinas developed along two different morphological processes, an evagination process that results in the inverted retina in vertebrate eyes and an invagination process that results in a verted retina in cephalopod eyes. The development of the inverted vertebrate retina and eye prototype morphology is strongly substantiated by physics of vision. The proposed evolutionary sequence for vertebrate eye development is simple and has the full potential to explain the origin of the inverted retina and leads to an eye prototype enabling visual detection and orientation. It allows the emergence of eye structures like, extraocular muscles, tapetum lucidum, biconvex lens, cornea, and pupil. This study supports the suggestion that a primitive inverted retina in the predecessor of vertebrates is of ectodermal origin and available before neurulation occurred. [ABSTRACT FROM AUTHOR]

The pupillary light reflex (PLR) adapts the amount of light reaching the retina, protecting it and improving image formation. Two PLR mechanisms have been described in vertebrates. First, the pretectum receives retinal inputs and projects to the Edinger-Westphal nucleus (EWN), which targets the ciliary ganglion through the oculomotor nerve (nIII). Postganglionic fibers enter the eye-globe, traveling to the iris sphincter muscle. Additionally, some vertebrates exhibit an iris-intrinsic PLR mechanism mediated by sphincter muscle cells that express melanopsin inducing muscle contraction. Given the high degree of conservation of the lamprey visual system, we investigated the mechanisms underlying the PLR to shed light onto their evolutionary origins. Recently, a PLR mediated by melanopsin was demonstrated in lampreys, suggested to be brain mediated. Remarkably, we found that PLR is instead mediated by direct retino-iridal cholinergic projections. This retina-mediated PLR acts synergistically with an iris-intrinsic mechanism that, as in other vertebrates, is mediated by melanopsin and has contribution of gap junctions between muscle fibers. In contrast, we show that lampreys lack the brain-mediated PLR. Our results suggest that two eye-intrinsic PLR mechanisms were present in early vertebrate evolution, whereas the brain-mediated PLR has a more recent origin. Two eye-intrinsic mechanisms mediate the pupillary light response in lampreys: direct retino-iridal projections and melanopsin mediated iris-intrinsic contraction, also present in other vertebrates, while the brain mediated mechanisms evolved later. [ABSTRACT FROM AUTHOR]

Peak metabolic rate reflects maximal performance and may have direct fitness consequences, whereas resting metabolic rate (RMR) represents the maintenance cost of the whole animal. These traits may be linked, which has significant implications for the evolution of both traits. In vertebrates, a positive correlation between RMR and aerobic capacity has been proposed to explain the origin of endothermy. However, as studies on the relationship between RMR and aerobic capacity have focused on vertebrates, we know much less about these traits in ectothermic insects. I measured RMR in the Glanville fritillary butterfly (Melitaea cinxia) using two configurations: one optimized for measuring flight metabolic rate and the other optimized for RMR. The relationship between RMR and body mass was similar for the two configurations. Body mass explained 82% of the variation in RMR when it was measured using the "flight" configuration at 32°C, and 91% when using the "rest" configuration at 23°C. The Q10 coefficient calculated based on the two RMR measurements was 2.8. Mass-independent RMR was positively correlated between measurements obtained using the two instrument configurations. However, neither measure of RMR was correlated with peak metabolic rate, which indicates that RMR cannot be used as a surrogate measure for aerobic capacity in the Glanville fritillary. Ectothermic insects may be able to combine high metabolic capacity with no apparent increase in maintenance cost. Even though RMR is among the most frequently measured physiological variables, it may have limited predictive power when it comes to questions related to activity or aerobic capacity, or in the case of butterflies, flight performance. [ABSTRACT FROM AUTHOR]

The functions of bright bands in coral and other snakes have long been a puzzle. The most common opinion is that coral snakes display aposematic marks and that other red and black banded snakes in the Americas are mimics of coral snakes. I previously found that this prevailing opinion is weakly supported and unlikely, that red and bands had probably evolved independently or conjointly many times, and that a present selection for bands and red seems to exist in a significant fraction of the world. Here, I review the potential selective forces for red and bands in snakes. I find that snakes as predators are a priori plausible selective agents. I find that ophiophagy appears to be an exceptionally high risk in snakes that are themselves ophiophagous. Testing the working hypothesis that bands and red are protective against snake predators via their association with ophiophagy, as ophiophagous snakes are at higher risk, I find that the consumption of elongate vertebrates predicts band and red coloration with a very high level of confidence: red and bands are probably defensive against snake predators. Noting an apparent correlation of coloration with specific defensive behaviours and ontogenetic colour changes, I review both and find that ophiophagous snakes are remarkable for using stereotypical defences and not being aggressive, while ontogenetic colour changes seem to affect red and bands in snakes disproportionately. Defence against ophidian predators may be an unexpected natural selection shaping the appearance and behaviours of many snakes. [ABSTRACT FROM AUTHOR]

The functions of bright bands in coral and other snakes have long been a puzzle. A common opinion is that coral snakes display aposematic marks and that other red and black banded snakes in the Americas are mimics of coral snakes. In two previous reviews, I challenged this prevailing opinion and showed that red and bands are probably defensive against snake predators. Here, I offer a plausible mechanisms through which red and bands could be protective against ophidian predators: the function of bands is to interfere with the focusing ability of snakes, which eyes, as in fish, rely on a ball lens that moves back and forth, a peculiarity among terrestrial vertebrates. Simulations show how the spherical aberrations created by ball lenses produce local maxima in contrast when out of focus, which would feel in focus. I conjecture that red targets specific visual receptors in snakes active in low light: these receptors would have a slow and saturating response. This conjecture is justified by the lability of vision in snakes and the overabundance of red light in dim light. Those conjectures allow precise and well-respected predictions and credibly explain a wide range of observations, such as the geographical repartition of tricolour snakes, the evolution of triadal patterns, the evolution of specific triadal-like patterns in some Erythrolamprus , and the repeated evolution of black and white banded snakes with a red dorsal line. Fish eyes have similar optics, and the function of the ubiquitous fish bands could likewise be to interfere with the vision of predators. [ABSTRACT FROM AUTHOR]

The development of fast, cost-effective, non-invasive, and efficient sampling alternatives, such as environmental DNA (eDNA), is crucial for understanding the changes in species biodiversity and distributions worldwide, particularly for low abundance, cryptic, and threatened species. This study utilized environmental eDNA to analyze the variety of aquatic, semi-aquatic, and terrestrial vertebrates in the Colombian Amazon and Orinoco basins. The study focused on four main subregions: Bojonawi Natural Reserve and adjacent areas (Vichada Department), Sierra de la Macarena National Park and Tillavá(Meta Department), Puerto Nariño and adjacent areas (Amazonas Department), and the Municipality of Solano (CaquetáDepartment). A total of 709 operational taxonomic units (OTUs) were identified across all sampling locations. The Orinoco River had the highest number of fish genera (68), while the Guayabero River had the highest number of tetrapod genera (13). New taxonomic records were found for all locations, with the highest number of previously undetected fish diversity being found in the Bita, Orinoco, and Tillavárivers, compared to traditional surveys. Likewise, the study identified two fish species, four mammal species, and one reptile species as vulnerable. Additionally, four mammal species were identified as endangered, including the giant otter (Pteronura brasiliensis), two subspecies of the Amazon River dolphin (Inia geoffrensis geoffrensis and Inia geoffrensis humboldtiana), and the tucuxi (Sotalia fluviatilis). Standardizing the methodology and improving current DNA sequence databases for the Neotropics is essential to develop future eDNA studies and enhance our understanding of the region's diversity. [ABSTRACT FROM AUTHOR]

The epithelial Na+ channel (ENaC) emerged early in vertebrates and has played a role in Na+ and fluid homeostasis throughout vertebrate evolution. We previously showed that proteolytic activation of the channel evolved at the water-to-land transition of vertebrates. Sensitivity to extracellular Na+, known as Na+ self-inhibition, reduces ENaC function when Na+ concentrations are high and is a distinctive feature of the channel. A fourth ENaC subunit, δ, emerged in jawed fishes from an α subunit gene duplication. Here, we analyzed 849 α and δ subunit sequences and found that a key Asp in a postulated Na+ binding site was nearly always present in the α subunit, but frequently lost in the δ subunit (e.g. human). Analysis of site evolution and codon substitution rates provide evidence that the ancestral α subunit had the site and that purifying selection for the site relaxed in the δ subunit after its divergence from the α subunit, coinciding with a loss of δ subunit expression in renal tissues. We also show that the proposed Na+ binding site in the α subunit is a bona fide site by conferring novel function to channels comprising human δ subunits. Together, our findings provide evidence that ENaC Na+ self-inhibition improves fitness through its role in Na+ homeostasis in vertebrates. [ABSTRACT FROM AUTHOR]

Across the wide range of land vertebrate species, spontaneous otoacoustic emissions (SOAE) are common, but not always found. The reasons for the differences between species of the various groups in their emission patterns are often not well understood, particularly within mammals. This review examines the question as to what determines in mammals whether SOAE are emitted or not, and suggests that the coupling between hair-cell regions diminishes when the space constant of frequency distribution becomes larger. The reduced coupling is assumed to result in a greater likelihood of SOAE being emitted. [ABSTRACT FROM AUTHOR]

Purpose: To assess the prevalence and subtypes of Human Papillomavirus (HPV) in Ocular Surface Squamous Neoplasia (OSSN) in Human Immunodeficiency Virus (HIV) positive and negative patients in South Africa. Basic procedures: This study was a single center retrospective cross-sectional study, conducted at Tygerberg Hospital, Western Cape, South Africa. We assessed 63 histopathologically confirmed OSSN formalin-fixed paraffin-embedded (FFPE) tissue blocks from 2015–2023. The presence of HPV was determined using the Hybrispot Direct Flow Chip Kit. Corresponding clinical data was retrieved from the National Health Laboratory Service (NHLS) central data warehouse. Main findings: Of the confirmed OSSN samples, 66.7% tested positive for HPV (95% confidence interval [CI] 54–77.3%). Of the 42 HPV positive samples, 38 (90.5%) had one or more known genotypes detected and 4 had unknown genotypes. The most prevalent subtypes were HPV 11, 16 and 18 (found in 61.9%, 52.4% and 33.3% of HPV positive samples respectively). 88.9% of the lesions biopsied were from HIV positive patients, of whom 56.4% had a CD4 + count of < 200 cells/µL. A lower median CD4 + count was detected among HIV positive patients with invasive squamous cell carcinoma compared to those with moderate dysplasia (p < 0.0198). Conclusions: There is a high prevalence of HPV in OSSN in South Africa. Certain subtypes namely, 11, 16, 18, 31, 33 and 35 may be more carcinogenic. HIV with HPV co-infection may be linked as a causative factor in the development of OSSN. [ABSTRACT FROM AUTHOR]

The paper analyzes the evolution of the thermoenergetic statuses of vertebrates and the associated evolutionary development of their heart. The analysis shows that, in most modern lepidosaurs and turtles, the heart is not completely, conditionally five-chambered: it has two atria and one ventricle, in which two incomplete septa divide it into three functional chambers. In some of them, these two septa were modified in evolution so that they turned into one with vertical and horizontal elements, as a result of which the heart became functionally four-chambered, with improved separation of arterial and venous blood flows. Crocodiles have a fully morphologically four-chambered heart. But the hearts of all reptiles, both recent and extinct, perform two opposite functions in parallel—the separation of arterial and venous blood flows and at the same time their regulated mixing. To do this, there are special morphological and physiological mechanisms in their hearts. Such a strange functional duality in the work of the reptilian heart aims to regulate the metabolism level by controlling the amount of carbon dioxide entering the blood flow: increasing the amount of CO2 in the blood flow reduces the metabolic rate; reducing its amount increases the metabolism. Mixed blood in the blood flow of reptiles is not an immature, primitive state, but a physiological necessity. Moreover, this method of regulating the metabolic rate is most adequate to the initial, ancestral thermoenergetic state in reptiles, because basal terrestrial tetrapods and most ancient reptiles were meso- and even tachymetabolic, i.e., almost or completely warm-blooded, endothermic animals. It was just these endothermic animals that needed such type of metabolism regulation. As a result, all recent reptiles have a complex morphophysiological organization of the heart, which was functionally more suitable for their almost warm-blooded ancestors. Recent reptiles use part of their ancestral properties as an adaptation to new environmental conditions, new environmental requirements, and their new morphophysiological state. This unique organization of the heart is characteristic of all modern and extinct reptiles, and, importantly, it is characteristic exclusively of reptiles owing to their original endothermic state. [ABSTRACT FROM AUTHOR]

Background: Gastrointestinal helminths are a very widespread group of intestinal parasites that can cause major health issues in their hosts, including severe illness or death. Traditional methods of helminth parasite identification using microscopy are time-consuming and poor in terms of taxonomic resolution, and require skilled observers. DNA metabarcoding has emerged as a powerful alternative for assessing community composition in a variety of sample types over the last few decades. While metabarcoding approaches have been reviewed for use in other research areas, the use of metabarcoding for parasites has only recently become widespread. As such, there is a need to synthesize parasite metabarcoding methodology and highlight the considerations to be taken into account when developing a protocol. Methods: We reviewed published literature that utilized DNA metabarcoding to identify gastrointestinal helminth parasites in vertebrate hosts. We extracted information from 62 peer-reviewed papers published between 2014 and 2023 and created a stepwise guide to the metabarcoding process. Results: We found that studies in our review varied in technique and methodology, such as the sample type utilized, genetic marker regions targeted and bioinformatic databases used. The main limitations of metabarcoding are that parasite abundance data may not be reliably attained from sequence read numbers, metabarcoding data may not be representative of the species present in the host and the cost and bioinformatic expertise required to utilize this method may be prohibitive to some groups. Conclusions: Overall, using metabarcoding to assess gastrointestinal parasite communities is preferable to traditional methods, yielding higher taxonomic resolution, higher throughput and increased versatility due to its utility in any geographical location, with a variety of sample types, and with virtually any vertebrate host species. Additionally, metabarcoding has the potential for exciting new discoveries regarding host and parasite evolution. [ABSTRACT FROM AUTHOR]

Endogenous retroviruses (ERVs) are remnants of ancestral viruses in the host genome. The present study identified the expression of a defective retroviral env gene belonging to the ERV group V member Env (EnvV) in Felis catus (EnvV‐Fca). EnV‐Fca was specifically detected in the placental trophoblast syncytiotrophobic layer and expressed as a secreted protein in cultured cells. Genetic analyses indicated that EnvV2 genes are widely present in vertebrates and are under purifying selection among carnivores, suggesting a potential benefit for the host. This study suggests that birds, bats, and rodents carrying EnvV2 may play significant roles as intermediate vectors in spreading or cross‐transmitting viruses among species. Our findings provide valuable insights into the evolution of ERV in vertebrate hosts. [ABSTRACT FROM AUTHOR]

Salinas Grandes de Hidalgo (La Pampa Province) is a relevant locality of the Cerro Azul Formation in central Argentina because of its abundant and diverse vertebrate remains, including representatives of Reptilia, Aves and mostly Mammalia. Concerning previous records, the present faunal list adds one Argyrolagidae marsupial, one Ctenomyidae and two Caviidae rodents, as well as the first detailed analysis and description of glyptodonts from the Cerro Azul Formation in La Pampa Province. New geological information is added about the two fossiliferous outcrops included in Salinas Grandes de Hidalgo area. The classically studied outcrop located in the saline lake and the nearby one in the so-called ex-Autódromo, both herein correlated based on lithostratigraphy, particularly by the presence of paleosols in the intermediate section of the sedimentary succession. These sandy silts deposits in the base of the outcrops indicate the development of poorly confined flows and intervals of surface stabilisation by paedogenesis. We offer a biochronological interpretation based on a recently published U-Pb detrital zircons dating (5.9 ± 0.4 Ma) and the presence of significant taxa such as octodontoid rodents recovered from the dated levels and below it. From a paleoenvironmental viewpoint, we infer variations from woodlands to open environments. [ABSTRACT FROM AUTHOR]

Island vertebrates have evolved a number of morphological, physiological, and life history characteristics that set them apart from their mainland relatives. However, to date, the evolution of metabolism and its impact on the vulnerability to extinction of insular vertebrates remains poorly understood. This study used metabolic data from 2813 species of tetrapod vertebrates, including 695 ectothermic and 2118 endothermic species, to reveal that island mammals and birds evolved convergent metabolic strategies toward a slow pace of life. Insularity was associated with shifts toward slower metabolic rates and greater generation lengths in endotherms, while insularity just drove the evolution of longer generation lengths in ectotherms. Notably, a slow pace of life has exacerbated the extinction of insular endemic species in the face of anthropogenic threats. These findings have important implications for understanding physiological adaptations associated with the island syndrome and formulating conservation strategies across taxonomic groups with different metabolic modes. [ABSTRACT FROM AUTHOR]

The Banna fanged frog (Limnonectes bannaensis) is known from China, Laos, and Vietnam; however knowledge about the natural history and dietary requirements of this species is virtually lacking. In this study, we provide data on the variation in dietary composition of L. bannaensis based on stomach-flushing of 117 individuals (41 males and 76 females) captured and subsequently released during our recent field work in Son La Province, northwestern Vietnam. A total of 19 prey categories with 513 items, comprising 502 items of invertebrates, seven items of vertebrates, and four unidentified items were found in the stomachs of L. bannaensis. The most important groups among the prey of L. bannaensis were Coleoptera (38.04%), followed by Hymenoptera (9.31%), Araneae (7.93%), Polydesmida (7.07%), Orthoptera (6.37%), Hemiptera (5.23%), and Lepidoptera (5.01%). Adult males (16 prey categories) consumed preys with slightly lower diversity than adult females (17 prey categories). There was 88.25% overlap in the diet between males and females and in both sexes the trophic spectrum was similar, predominantly consisting of Coleoptera, Polydesmida, Araneae, Hymenoptera, Orthoptera, Lepidoptera, and Hemiptera. [ABSTRACT FROM AUTHOR]

Embryonic development is a complex and dynamic process that unfolds over time and involves the production and diversification of increasing numbers of cells. The impact of developmental time on the formation of the central nervous system is well documented, with evidence showing that time plays a crucial role in establishing the identity of neuronal subtypes. However, the study of how time translates into genetic instructions driving cell fate is limited by the scarcity of suitable experimental tools. We introduce BirthSeq, a new method for isolating and analyzing cells based on their birth date. This innovative technique allows for in vivo labeling of cells, isolation via fluorescence-activated cell sorting, and analysis using high-throughput techniques. We calibrated the BirthSeq method for developmental organs across three vertebrate species (mouse, chick and gecko), and utilized it for single-cell RNA sequencing and novel spatially resolved transcriptomic approaches in mouse and chick, respectively. Overall, BirthSeq provides a versatile tool for studying virtually any tissue in different vertebrate organisms, aiding developmental biology research by targeting cells and their temporal cues. [ABSTRACT FROM AUTHOR]

Anti‐aging research has made significant strides in identifying treatments capable of extending lifespan across a range of organisms, from simple invertebrates to mammals. This review showcases the current state of anti‐aging interventions, highlighting the lifespan extensions observed in animal models through various treatments and the challenges encountered in translating these findings to humans. Despite promising results in lower organisms, the translation of anti‐aging treatments to human applications presents a considerable challenge. This discrepancy can be attributed to the increasing complexity of biological systems, species‐specific metabolic and genetic differences, and the redundancy of metabolic pathways linked to longevity. Our review focuses on analyzing these challenges, offering insights into the efficacy of anti‐aging mechanisms across species and identifying key barriers to their translation into human treatments. By synthesizing current knowledge and identifying gaps in translatability, this review aims to underscore the importance of advancing these therapies for human benefit. Bridging this gap is essential to assess the potential of such treatments in extending the human healthspan. [ABSTRACT FROM AUTHOR]

Developmental and Epileptic Encephalopathies (DEE) are a genetically diverse group of severe, early onset seizure disorders. DEE are normally identified clinically in the first six months of life by the presence of frequent, difficult to control seizures and accompanying stalling or regression of development. DEE75 results from de novo mutations of the NEUROD2 gene that result in loss of activity of the encoded transcription factor, and the seizure phenotype was shown to be recapitulated in Xenopus tropicalis tadpoles. We used CRISPR/Cas9 to make a DEE75 model in Xenopus laevis , to further investigate the developmental etiology. NeuroD2.S CRISPR/Cas9 edited tadpoles were more active, swam faster on average, and had more seizures (C-shaped contractions resembling unprovoked C-start escape responses) than their sibling controls. Live imaging of Ca2+ signaling revealed prolongued, strong signals sweeping through the brain, indicative of neuronal hyperactivity. While the resulting tadpole brain appeared grossly normal, the blood-brain barrier (BBB) was found to be leakier than that of controls. Additionally, the TGFβ antagonist Losartan was shown to have a short-term protective effect, reducing neuronal hyperactivity and reducing permeability of the BBB. Treatment of NeuroD2 CRISPant tadpoles with 5 mM Losartan decreased seizure events by more than 4-fold compared to the baseline. Our results support a model of DEE75 resulting from reduced NeuroD2 activity during vertebrate brain development, and indicate that a leaky BBB contributes to epileptogenesis. [ABSTRACT FROM AUTHOR]

The Earth Hologenome Initiative (EHI) is a global collaboration to generate and analyse hologenomic data from wild animals and associated microorganisms using standardised methodologies underpinned by open and inclusive research principles. Initially focused on vertebrates, it aims to re-examine ecological and evolutionary questions by studying host–microbiota interactions from a systemic perspective. [ABSTRACT FROM AUTHOR]

Oocytes spend the majority of their lifetime in a primordial state. The cellular and molecular biology of primordial oocytes is largely unexplored; yet, it is necessary to study them to understand the mechanisms through which oocytes maintain cellular fitness for decades, and why they eventually fail with age. Here, we develop enabling methods for live-imaging-based comparative characterization of Xenopus, mouse and human primordial oocytes. We show that primordial oocytes in all three vertebrate species contain active mitochondria, Golgi and lysosomes. We further demonstrate that human and Xenopus oocytes have a Balbiani body characterized by a dense accumulation of mitochondria in their cytoplasm. However, despite previous reports, we did not find a Balbiani body in mouse oocytes. Instead, we demonstrate that what was previously used as a marker for the Balbiani body in mouse primordial oocytes is in fact a ring-shaped Golgi that is not functionally associated with oocyte dormancy. This study provides the first insights into the organization of the cytoplasm in mammalian primordial oocytes, and clarifies the relative advantages and limitations of choosing different model organisms for studying oocyte dormancy. [ABSTRACT FROM AUTHOR]

During the last decades several miniaturized frogs have been described from different parts of the world. Those frogs, measuring less than 25 mm, show similar miniaturization features as the loss of phalanges in both the anterior and posterior limbs and the reduction of bone elements. However, there seems to be a limit regarding the minimum size of frogs and here we wanted to find an answer to the question: which is the smallest amphibian in the world? In 2019, an endemic species of toad known only from two localities in southern Bahia, Brazil, was studied. When we compared the size of adult representatives of this species with those of other species discovered in various parts of the world in the last decade, we observed that individuals of Brachycephalus pulex are the amphibians with the smallest total length recorded, thus qualifying them to bear the title of the tiniest anuran amphibian, and also tiniest vertebrate in the world. [ABSTRACT FROM AUTHOR]

Functional redundancy, the potential for the functional role of one species to be fulfilled by another, is a key determinant of ecosystem viability. Scavenging transfers huge amount of energy through ecosystems and is, therefore, crucial for ecosystem viability and healthy ecosystem functioning. Despite this, relatively few studies have examined functional redundancy in scavenger communities. Moreover, the results of these studies are mixed and confined to a very limited range of habitat types and taxonomic groups.This study attempts to address this knowledge gap by conducting a field experiment in an undisturbed natural environment assessing functional roles and redundancy in vertebrate and invertebrate scavenging communities in a South African savanna.We used a large‐scale field experiment to suppress ants in four 1 ha plots in a South African savanna and paired each with a control plot. We distributed three types of small food bait: carbohydrate, protein and seed, across the plots and excluded vertebrates from half the baits using cages. Using this combination of ant suppression and vertebrate exclusion, allowed us explore the contribution of non‐ant invertebrates, ants and vertebrates in scavenging and also to determine whether either ants or vertebrates were able to compensate for the loss of one another.In this study, we found the invertebrate community carried out a larger proportion of overall scavenging services than vertebrates. Moreover, although scavenging was reduced when either invertebrates or vertebrates were absent, the presence of invertebrates better mitigated the functional loss of vertebrates than did the presence of vertebrates against the functional loss of invertebrates. There is a commonly held assumption that the functional role of vertebrate scavengers exceeds that of invertebrate scavengers; our results suggest that this is not true for small scavenging resources.Our study highlights the importance of invertebrates for securing healthy ecosystem functioning both now and into the future. We also build upon many previous studies which show that ants can have particularly large effects on ecosystem functioning. Importantly, our study suggests that scavenging in some ecosystems may be partly resilient to changes in the scavenging community, due to the potential for functional compensation by vertebrates and ants. [ABSTRACT FROM AUTHOR]

Aim: Global patterns in species distributions such as the latitudinal biodiversity gradient are of great interest to ecologists and have been thoroughly studied. Whether such a gradient holds true for the proportion of species associated with key ecotypes such as forests is however unknown. Identifying a gradient and ascertaining the factors causing it could further our understanding of community sensitivity to deforestation and uncover drivers of habitat specialization. The null hypothesis is that proportions of forest species remain globally consistent, though we hypothesize that proportions will change with differences in ecotype amount, spatial structure, and environmental stability. Here we study whether the proportion of forest species follows a latitudinal gradient, and test hypotheses for why this may occur. Location: Worldwide. Time period: Present. Major taxa studied: Terrestrial vertebrates. Methods: We combined range maps and habitat use data for all terrestrial vertebrates to calculate the proportion of forest species in an area. We then used data on the global distribution of current, recent historical, and long‐term historical forest cover, as well as maps of global disturbances and plant diversity to test our hypotheses using generalized linear models. Results: We identified a latitudinal gradient in the proportion of forest species whereby the highest proportions occurred at the equator and decreased polewards. We additionally found that the proportion of forest species increased with current forest cover, historical deforestation, plant structural complexity, and habitat stability. Despite the inclusion of these variables, the strong latitudinal gradient remained, suggesting additional causes of the gradient. Main conclusions: Our findings suggest that the global distribution of the proportion of forest species is a result of recent ecological, as well as long‐term evolutionary factors. Interestingly, high proportions of forest species were found in areas that experienced historical deforestation, suggesting a lagged response to such perturbations and potential extinction debt. [ABSTRACT FROM AUTHOR]

Color mutations are a common phenomenon in vertebrates. Among these anomalies, albinism is the most common in wild mammals. We deployed 78 camera traps across the Yoko Council Forest (YCF) to inventory medium to large-sized terrestrial mammals and we obtained a total effort of 17,981 operational camera trap days, giving 169 detections of long-nosed mongoose. During this study, we obtained two independent detections of albino long-nosed mongooses (Xenogale naso). To our knowledge, this is the first report of albinism in this taxon. [ABSTRACT FROM AUTHOR]

Context: DNA recovered from predator faeces (scats) can be used to determine the presence of fauna and shed light on their life histories and inter-species interactions. DNA metabarcoding, which involves concurrent amplification and sequencing of DNA from multiple taxa, represents an important advance by enabling the simultaneous detection of multiple species from such samples. Although an attractive proposition, metabarcoding requires 'universally' applicable genetic markers that can discriminate among a broad range of taxa, while also targeting sequences that are sufficiently short to be amplified from degraded DNA. Aims: To identify, evaluate, and test metabarcoding DNA markers suitable for the detection of marsupials and other Australian fauna from terrestrial predator scats found in nature. Methods: We apply a bioinformatic approach using publicly available DNA databases and a locally derived and marker-specific reference-DNA database to evaluate the diagnostic ability and likelihood of amplification of candidate metabarcoding markers for marsupials and other taxa that may be consumed by predators. Key results: We identify two markers (12SV5 and 16SMam) that are suitable for use and successfully identify marsupial sequences at a high level of resolution. These markers work best in combination because they bring complementary levels of primer specificity and diagnostic ability in detecting multiple prey species as well as the predator. We also show that these samples work well in predator scats sampled from the wild in Tasmania. Conclusions: These markers provide a useful tool for surveying mammalian predators and their prey and could also be applied to eDNA analyses from other sample types. Improvements to the reference database and further development of markers targeting different taxonomic groups will improve the resolution and usefulness of this approach. Implications: Metabarcoding of predator scats provides a potent approach to non-invasive wildlife survey that offers the opportunity for the detection of multiple species across all vertebrates. DNA recovered from predator faeces can be used to determine the presence of fauna and shed light on their life histories and inter-species interactions. We identified two markers (12SV5 and 16SMam) that, in combination, are suitable for successfully identifying marsupial sequences at a high level of resolution. We also showed that these samples work well in predator scats sampled from the wild, providing a potent approach to non-invasive wildlife survey, and therefore management, through the detection of multiple species across all vertebrates. Photograph by Anna MacDonald. [ABSTRACT FROM AUTHOR]

In eukaryotes, cytosine methylation is a primary heritable epigenetic modification of the genome that regulates many cellular processes. In invertebrate, methylated cytosine generally located on specific genomic elements (e.g., gene bodies and silenced repetitive elements) to show a "mosaic" pattern. While in jawed vertebrate (teleost and tetrapod), highly methylated cytosine located genome‐wide but only absence at regulatory regions (e.g., promoter and enhancer). Many studies imply that the evolution of DNA methylation reprogramming may have helped the transition from invertebrates to jawed vertebrates, but the detail remains largely elusive. In this study, we used the whole‐genome bisulfite‐sequencing technology to investigate the genome‐wide methylation in three tissues (heart, muscle, and sperm) from the sea lamprey, an extant agnathan (jawless) vertebrate. Strikingly, we found that the methylation level of the sea lamprey is very similar to that in sea urchin (a deuterostome) and sea squirt (a chordate) invertebrates. In sum, the global pattern in sea lamprey is intermediate methylation level (around 30%), that is higher than methylation level in the genomes of pre‐bilaterians and protostomes (1%−10%), but lower than methylation level appeared in jawed vertebrates (around 70%, teleost and tetrapod). We anticipate that, in addition to genetic dynamics such as genome duplications, epigenetic dynamics such as global methylation reprograming was also orchestrated toward the emergence and evolution of vertebrates. Research highlight: This study exhibited DNA methylation of jawless vertebrates, shedding light on genomics methylation disparities in metazoans.This study underscores the crucial role of epigenetic dynamics (e.g., methylation reprogramming) in the emergence and diversification of vertebrates. [ABSTRACT FROM AUTHOR]

Background: Severe fever with thrombocytopenia syndrome (SFTS) is an emerging tick-borne zoonosis caused by the SFTS virus (SFTSV). Understanding the prevalence of SFTSV RNA in humans, vertebrate hosts and ticks is crucial for SFTS control. Methods: A systematic review and meta-analysis were conducted to determine the prevalence of SFTSV RNA in humans, vertebrate hosts and questing ticks. Nine electronic databases were searched for relevant publications, and data on SFTSV RNA prevalence were extracted. Pooled prevalence was estimated using a random effects model. Subgroup analysis and multivariable meta-regression were performed to investigate sources of heterogeneity. Results: The pooled prevalence of SFTSV RNA in humans was 5.59% (95% confidence interval [CI] 2.78–9.15%) in those in close contact (close contacts) with infected individuals (infected cases) and 0.05% (95% CI 0.00–0.65%) in healthy individuals in endemic areas. The SFTSV infection rates in artiodactyls (5.60%; 95% CI 2.95–8.96%) and carnivores (6.34%; 95% CI 3.27–10.23%) were higher than those in rodents (0.45%; 95% CI 0.00–1.50%). Other animals, such as rabbits, hedgehogs and birds, also played significant roles in SFTSV transmission. The genus Haemaphysalis was the primary transmission vector, with members of Ixodes, Dermacentor, and Amblyomma also identified as potential vectors. The highest pooled prevalence was observed in adult ticks (1.03%; 95% CI 0.35–1.96%), followed by nymphs (0.66%; 95% CI 0.11–1.50%) and larvae (0.01%; 95% CI 0.00–0.46%). The pooled prevalence in ticks collected from endemic areas (1.86%; 95% CI 0.86–3.14%) was higher than that in ticks collected in other regions (0.41%; 95% CI 0.12–0.81%). Conclusions: Latent SFTSV infections are present in healthy individuals residing in endemic areas, and close contacts with SFTS cases are at a significantly higher risk of infection. The type of animal is linked to infection rates in vertebrate hosts, while infection rates in ticks are associated with the developmental stage. Further research is needed to investigate the impact of various environmental factors on SFTSV prevalence in vertebrate hosts and ticks. [ABSTRACT FROM AUTHOR]

The Living Planet Index (LPI) measures the average change in population size of vertebrate species over recent decades and has been repeatedly used to assess the changing state of nature. The LPI indicates that vertebrate populations have decreased by almost 70% over the last 50 years. This is in striking contrast with current studies based on the same population time series data that show that increasing and decreasing populations are balanced on average. Here, we examine the methodological pipeline of calculating the LPI to search for the source of this discrepancy. We find that the calculation of the LPI is biased by several mathematical issues which impose an imbalance between detected increasing and decreasing trends and overestimate population declines. Rather than indicating that vertebrate populations do not substantially change, our findings imply that we need better measures for providing a balanced picture of current biodiversity changes. We also show some modifications to improve the reliability of the LPI. The Living Planet Index is a widely used metric to measure the global population trends of vertebrates. This in-depth analysis of the methodology underlying the index reveals fundamental issues and identifies modifications that partly alleviate them. [ABSTRACT FROM AUTHOR]