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Crystallization of the rice immune receptor RGA5A_S with the rice blast fungus effector AVR1‐CO39 prepared <italic>via</italic> mixture and tandem strategies.

Authors :
Guo, Liwei
Zhang, Yikun
Ma, Mengqi
Liu, Qiang
Zhang, Yanan
Peng, Youliang
Liu, Junfeng
Source :
Acta Crystallographica: Section F, Structural Biology Communications. Apr2018, Vol. 74 Issue 4, p262-267. 5p.
Publication Year :
2018

Abstract

RGA5 is a component of the Pia resistance‐protein pair (RGA4/RGA5) from &lt;italic&gt;Oryza sativa&lt;/italic&gt; L. &lt;italic&gt;japonica&lt;/italic&gt;. It acts as an immune receptor that directly recognizes the effector AVR1‐CO39 from &lt;italic&gt;Magnaporthe oryzae via&lt;/italic&gt; a C‐terminal non‐LRR domain (RGA5A_S). The interaction between RGA5A_S and AVR1‐CO39 relieves the repression of RGA4, leading to effector‐independent cell death. To determine the structure of the complex of RGA5A_S and AVR1‐CO39 and to understand the details of this interaction, the complex was prepared by fusing the proteins together, by mixing them &lt;italic&gt;in vitro&lt;/italic&gt; or by co‐expressing them in one host cell. Samples purified &lt;italic&gt;via&lt;/italic&gt; the first two strategies were crystallized under two different conditions. A mixture of AVR1‐CO39 and RGA5A_S (complex I) crystallized in 1.1 &lt;italic&gt;M&lt;/italic&gt; ammonium tartrate dibasic, 0.1 &lt;italic&gt;M&lt;/italic&gt; sodium acetate–HCl pH 4.6, while crystals of the fusion complex RGA5A_S‐TEV‐AVR1‐CO39 (complex II) were grown in 2 &lt;italic&gt;M&lt;/italic&gt; NaCl. The crystal of complex I belonged to space group &lt;italic&gt;P&lt;/italic&gt;3121, with unit‐cell parameters &lt;italic&gt;a&lt;/italic&gt;&#160;=&#160;&lt;italic&gt;b&lt;/italic&gt; = 66.2, &lt;italic&gt;c&lt;/italic&gt; = 108.8 &#197;, α = β = 90, γ = 120&#176;. The crystals diffracted to a Bragg spacing of 2.4 &#197;, and one molecule each of RGA5A_S and AVR1‐CO39 were present in the asymmetric unit of the initial model. The crystal of complex II belonged to space group &lt;italic&gt;I&lt;/italic&gt;4, with unit‐cell parameters &lt;italic&gt;a&lt;/italic&gt; = &lt;italic&gt;b&lt;/italic&gt; = 137.4, &lt;italic&gt;c&lt;/italic&gt; = 66.2 &#197;, α = β = γ = 90&#176;. The crystals diffracted to a Bragg spacing of 2.72 &#197;, and there were two molecules of RGA5A_S and two molecules of AVR1‐CO39 in the asymmetric unit of the initial model. Further structural characterization of the interaction between RGA5A_S and AVR1‐CO39 will lead to a better understanding of the mechanism underlying effector recognition by R proteins. [ABSTRACT FROM AUTHOR]

Subjects

Subjects :
*CRYSTALLIZATION
*CELL death
*RICE

Details

Language :
English
ISSN :
2053230X
Volume :
74
Issue :
4
Database :
Academic Search Index
Journal :
Acta Crystallographica: Section F, Structural Biology Communications
Publication Type :
Academic Journal
Accession number :
129033369
Full Text :
https://doi.org/10.1107/S2053230X18003618