Decreased number of locules and pericarp cell layers underlie smaller and ovoid fruit in tomato smaller fruit (sf) mutant.

Fruit size and shape are the primary criteria for domestication and improvement of tomato. The varying sizes and shapes of tomato fruit further signify their importance as agronomic traits. Here, we characterized a tomato mutant, smaller fruit (sf), which bears relatively small and ovoid fruits compared with the large and flat fruits of the wild-type (WT). Phenotypic measurements and histological analyses revealed that fruit diameter but not fruit length of the sf mutant decreased compared with that of the WT. This phenotypic change was attributed to significant decreases in locule number and pericarp cell layers in a transverse direction, which resulted in the transition of fruit shape from flat in the WT to ovoid in sf. Comparison of the transcriptomes of ovaries of sf with the WT using RNA-Seq identified 2596 differentially expressed genes, in which 1737 genes significantly were up-regulated and 859 genes were dramatically down-regulated in the sf ovary. Further analyses confirmed that some genes, such as CRCa, CNRs, CYCs, WUS, SUNs, OFRs, CDKs, participate in regulation of fruit size and shape of sf mutant. Thus, our study adds a new genetic resource regarding fruit size and shape of tomato, and provides a valuable basis for understanding molecular regulation of small and ovoid fruit of the sf mutant. [ABSTRACT FROM AUTHOR]