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Sequencing through thick and thin: Historiographical and philosophical implications.

Authors :
Lowe, James W.E.
Source :
Studies in History & Philosophy of Biological & Biomedical Sciences. Dec2018, Vol. 72, p10-27. 18p.
Publication Year :
2018

Abstract

Abstract DNA sequencing has been characterised by scholars and life scientists as an example of 'big', 'fast' and 'automated' science in biology. This paper argues, however, that these characterisations are a product of a particular interpretation of what sequencing is, what I call 'thin sequencing'. The 'thin sequencing' perspective focuses on the determination of the order of bases in a particular stretch of DNA. Based upon my research on the pig genome mapping and sequencing projects, I provide an alternative 'thick sequencing' perspective, which also includes a number of practices that enable the sequence to travel across and be used in wider communities. If we take sequencing in the thin manner to be an event demarcated by the determination of sequences in automated sequencing machines and computers, this has consequences for the historical analysis of sequencing projects, as it focuses attention on those parts of the work of sequencing that are more centralised, fast (and accelerating) and automated. I argue instead that sequencing can be interpreted as a more open-ended process including activities such as the generation of a minimum tile path or annotation, and detail the historiographical and philosophical consequences of this move. Highlights • DNA sequencing is primarily understood by a 'thin sequencing' perspective. • I propose a 'thick sequencing' perspective. • Thick sequencing includes different stages of assembly, evaluation and annotation. • An alternative picture of the nature and organisation of sequencing is presented. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
13698486
Volume :
72
Database :
Academic Search Index
Journal :
Studies in History & Philosophy of Biological & Biomedical Sciences
Publication Type :
Academic Journal
Accession number :
133301027
Full Text :
https://doi.org/10.1016/j.shpsc.2018.10.007