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The Rat Genome Database curation tool suite: a set of optimized software tools enabling efficient acquisition, organization, and presentation of biological data.

Authors :
Laulederkind, Stanley J. F.
Shimoyama, Mary
Hayman, G. Thomas
Lowry, Timothy F.
Nigam, Rajni
Petri, Victoria
Smith, Jennifer R.
Shur-Jen Wang
de Pons, Jeff
Kowalski, George
Liu, Weisong
Rood, Wes
Munzenmaier, Diane H.
Dwinell, Melinda R.
Twigger, Simon N.
Jacob, Howard J.
Source :
Database: The Journal of Biological Databases & Curation. 2011, Vol. 2011, p1-8. 8p.
Publication Year :
2011

Abstract

The Rat Genome Database (RGD) is the premier repository of rat genomic and genetic data and currently houses over 40 000 rat gene records as well as human and mouse orthologs, 1771 rat and 1911 human quantitative trait loci (QTLs) and 2209 rat strains. Biological information curated for these data objects includes disease associations, phenotypes, pathways, molecular functions, biological processes and cellular components. A suite of tools has been developed to aid curators in acquiring and validating data objects, assigning nomenclature, attaching biological information to objects and making connections among data types. The software used to assign nomenclature, to create and edit objects and to make annotations to the data objects has been specifically designed to make the curation process as fast and efficient as possible. The user interfaces have been adapted to the work routines of the curators, creating a suite of tools that is intuitive and powerful. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
17580463
Volume :
2011
Database :
Academic Search Index
Journal :
Database: The Journal of Biological Databases & Curation
Publication Type :
Academic Journal
Accession number :
133355391
Full Text :
https://doi.org/10.1093/database/bar002