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GEMtractor: extracting views into genome-scale metabolic models.
- Source :
-
Bioinformatics . 05/15/2020, Vol. 36 Issue 10, p3281-3282. 2p. - Publication Year :
- 2020
-
Abstract
- Summary Computational metabolic models typically encode for graphs of species, reactions and enzymes. Comparing genome-scale models through topological analysis of multipartite graphs is challenging. However, in many practical cases it is not necessary to compare the full networks. The GEMtractor is a web-based tool to trim models encoded in SBML. It can be used to extract subnetworks, for example focusing on reaction- and enzyme-centric views into the model. Availability and implementation The GEMtractor is licensed under the terms of GPLv3 and developed at github.com/binfalse/GEMtractor—a public version is available at sbi.uni-rostock.de/gemtractor. [ABSTRACT FROM AUTHOR]
- Subjects :
- *METABOLIC models
Subjects
Details
- Language :
- English
- ISSN :
- 13674803
- Volume :
- 36
- Issue :
- 10
- Database :
- Academic Search Index
- Journal :
- Bioinformatics
- Publication Type :
- Academic Journal
- Accession number :
- 143197406
- Full Text :
- https://doi.org/10.1093/bioinformatics/btaa068