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Development of a novel lipid metabolism-based risk score model in hepatocellular carcinoma patients.

Authors :
Wang, Wenjie
Zhang, Chen
Yu, Qihong
Zheng, Xichuan
Yin, Chuanzheng
Yan, Xueke
Liu, Gang
Song, Zifang
Source :
BMC Gastroenterology. 2/12/2021, Vol. 21 Issue 1, p1-11. 11p.
Publication Year :
2021

Abstract

<bold>Background: </bold>Liver cancer is one of the most common malignancies worldwide. HCC (hepatocellular carcinoma) is the predominant pathological type of liver cancer, accounting for approximately 75-85 % of all liver cancers. Lipid metabolic reprogramming has emerged as an important feature of HCC. However, the influence of lipid metabolism-related gene expression in HCC patient prognosis remains unknown. In this study, we performed a comprehensive analysis of HCC gene expression data from TCGA (The Cancer Genome Atlas) to acquire further insight into the role of lipid metabolism-related genes in HCC patient prognosis.<bold>Methods: </bold>We analyzed the mRNA expression profiles of 424 HCC patients from the TCGA database. GSEA(Gene Set Enrichment Analysis) was performed to identify lipid metabolism-related gene sets associated with HCC. We performed univariate Cox regression and LASSO(least absolute shrinkage and selection operator) regression analyses to identify genes with prognostic value and develop a prognostic model, which was tested in a validation cohort. We performed Kaplan-Meier survival and ROC (receiver operating characteristic) analyses to evaluate the performance of the model.<bold>Results: </bold>We identified three lipid metabolism-related genes (ME1, MED10, MED22) with prognostic value in HCC and used them to calculate a risk score for each HCC patient. High-risk HCC patients exhibited a significantly lower survival rate than low-risk patients. Multivariate Cox regression analysis revealed that the 3-gene signature was an independent prognostic factor in HCC. Furthermore, the signature provided a highly accurate prediction of HCC patient prognosis.<bold>Conclusions: </bold>We identified three lipid-metabolism-related genes that are upregulated in HCC tissues and established a 3-gene signature-based risk model that can accurately predict HCC patient prognosis. Our findings support the strong links between lipid metabolism and HCC and may facilitate the development of new metabolism-targeted treatment approaches for HCC. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
1471230X
Volume :
21
Issue :
1
Database :
Academic Search Index
Journal :
BMC Gastroenterology
Publication Type :
Academic Journal
Accession number :
148676185
Full Text :
https://doi.org/10.1186/s12876-021-01638-3