Mitochondrial DNA diversity divulges high levels of haplotype diversity and lack of genetic structure in the Indian camels.

• Mitochondrial DNA based genetic diversity was explored in the Indian dromedary and Bactrian camel populations. • The haplotype and nucleotide diversity in the Indian dromedaries was higher than the indices reported worldwide. • There was lack of genetic structuring in the Indian dromedaries based on geographical distribution. • Signals of population expansion were evident in the dromedary camels of India. • C. ferus , C. bactrianus and C. dromedarius revealed existence of separate mitochondrial lineages. Camels represent an important genetic resource of the desert ecosystems of India, with the dromedary and Bactrian camels inhabiting the hot and cold deserts, respectively. This study is the first attempt to investigate mitochondrial DNA based genetic diversity in the Indian camel populations and explores their relationship in the context of global genetic diversity of all the three large camel species (Camelus ferus, Camelus bactrianus and Camelus dromedaries). A mitochondrial DNA fragment encompassing part of cytochrome b gene, tRNAThr, tRNAPro and the beginning of the control region was amplified and analyzed in 72 dromedary and 8 Bactrian camels of India. Sequence analysis revealed that the haplotype and nucleotide diversity (Hd: 0.937 and π: 0.00431) in the Indian dromedaries was higher than the indices reported so far for the dromedary or Bactrian camels across the globe. The corresponding values in the Indian Bactrian camels were 1.000 and 0.00393, respectively. Signals of population expansion were evident in the dromedaries of India on the basis of mismatch analysis and Fu's Fs values. The analysis of molecular variance attributed most of the genetic variance (92.15%) between the dromedary, wild Bactrian and domestic Bactrian camels indicating separate maternal origins. The existence of three mitochondrial lineages in the old world camels (C. bactrianus : Lineage A; C. ferus : Lineage B and C. dromedarius : Lineage C) was also substantiated by the topology of the Median-Joining network. [ABSTRACT FROM AUTHOR]