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Genomic landscape, immune characteristics and prognostic mutation signature of cervical cancer in China.

Authors :
Liu, Jing
Li, Zirong
Lu, Ting
Pan, Junping
Li, Li
Song, Yanwen
Hu, Dan
Zhuo, Yanhong
Chen, Ying
Xu, Qin
Source :
BMC Medical Genomics. 11/4/2022, Vol. 15 Issue 1, p1-12. 12p.
Publication Year :
2022

Abstract

Purpose: This study aimed to analyse the genomic alteration profiles and immune characteristics of a cohort of Chinese cervical cancer patients to understand why certain patients benefited from molecular targeted therapies and immunotherapy as well as their prognostic significance. Methods: PD-L1 expression and clinicopathological information were obtained from 98 cervical cancer patients. Differences in PD-L1 expression and gene mutations between squamous cell carcinoma (SCC) and adenocarcinoma (AC) were analysed by the chi-square test or Fisher's exact test. Differences in gene mutations between our cohort and The Cancer Genome Atlas (TCGA) cohort were tested by Fisher's exact test. Logistic regression was used to analyse factors influencing TMB-high. Results: Positive PD-L1 expression was significantly higher in cervical SCC than in cervical AC (87% vs. 39%, p < 0.001). Frequently mutated genes in cervical cancer included the PIK3CA, KMT2D, and KMT2C genes, among others. PIK3CA gene mutation rates were significantly higher in SCC than in AC (p = 0.004). The TERT gene mutation rate was significantly higher in our cohort than in the TCGA cohort (12% vs. 1%, p < 0.001). The independent predictors of high TMB were KMT2C and LRP1B gene mutations (p < 0.05). We also found that PTEN mutations were associated with worse survival (median PFS, 12.16 vs. 21.75 months, p = 0.0024). Conclusion: Cervical SCC and AC have different molecular profiles and immune characteristics, suggesting that targeted treatments for SCC and AC patients may improve clinical outcomes. KMT2C and LRP1B gene mutations are independent predictors of TMB-high status in cervical cancer. We also proposed the prognostic value of PTEN mutations. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
17558794
Volume :
15
Issue :
1
Database :
Academic Search Index
Journal :
BMC Medical Genomics
Publication Type :
Academic Journal
Accession number :
160073847
Full Text :
https://doi.org/10.1186/s12920-022-01376-9