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CellProfiler plugins – An easy image analysis platform integration for containers and Python tools.
- Source :
-
Journal of Microscopy . Sep2023, p1. 8p. 2 Illustrations, 1 Chart. - Publication Year :
- 2023
-
Abstract
- CellProfiler is a widely used software for creating reproducible, reusable image analysis workflows without needing to code. In addition to the >90 modules that make up the main CellProfiler program, CellProfiler has a plugins system that allows for the creation of new modules which integrate with other Python tools or tools that are packaged in software containers. The CellProfiler‐plugins repository contains a number of these CellProfiler modules, especially modules that are experimental and/or dependency‐heavy. Here, we present an upgraded CellProfiler‐plugins repository, an example of accessing containerised tools, improved documentation and added citation/reference tools to facilitate the use and contribution of the community. [ABSTRACT FROM AUTHOR]
Details
- Language :
- English
- ISSN :
- 00222720
- Database :
- Academic Search Index
- Journal :
- Journal of Microscopy
- Publication Type :
- Academic Journal
- Accession number :
- 172263588
- Full Text :
- https://doi.org/10.1111/jmi.13223