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Chromosome‐level genome assembly of the Asian citrus psyllid, Diaphorina citri.

Authors :
Lei, Shuang
Yu, Shi‐Jiang
Pan, Qi
Ding, Li‐Li
Li, Si‐Chen
Cheng, Lu‐Yan
Wang, Shu‐Qi
Lou, Bing‐Hai
He, Jun
Lei, Cui‐Yun
Cong, Lin
Liu, Hao‐Qiang
Wang, Xue‐Feng
Ran, Chun
Source :
Insect Science. Feb2024, Vol. 31 Issue 1, p13-27. 15p.
Publication Year :
2024

Abstract

Diaphorina citri is a global citrus pest. As a vector insect, it can transmit the causative agents of citrus huanglongbing, causing irreversible losses to the citrus industry. The acquisition of genomic information can provide a molecular genetic basis for effective control of D. citri. Here, the DNBSEQ™, Oxford Nanopore Technologies, and Hi‐C technologies are applied to generate a high‐quality chromosome‐level genome of D. citri. The genome size of D. citri was 523.78 Mb with a scaffold N50 of 47.05 Mb distributed on 13 chromosomes. A total of 250.64 Mb (47.85%) repeat sequences and 24 048 protein‐coding genes were predicted. Genome resequencing of female and male individuals indicated that the sex chromosome system of D. citri is XO. Phylogenetic analysis demonstrated that D. citri and Pachypsylla venusta, which separated from their most recent common ancestor about 336.62 million years ago, were the most closely related. Additionally, we identified genes potentially involved in detoxification metabolism, pathogen transmission, and honeydew secretion for further investigation. The high‐quality genome provides an important reference for developing effective management strategies of D. citri. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
16729609
Volume :
31
Issue :
1
Database :
Academic Search Index
Journal :
Insect Science
Publication Type :
Academic Journal
Accession number :
175417230
Full Text :
https://doi.org/10.1111/1744-7917.13214